BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780892|ref|YP_003065305.1| probable two-component
response regulator protein [Candidatus Liberibacter asiaticus str.
psy62]
         (133 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score =  167 bits (424), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    ++K+     +  GF V  A    +A E   +   P+ +++D  +  + 
Sbjct: 1   MPLVLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQH-RPDVIILDLMLPALD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+ P   ++ V  L      E  + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFTVCELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQL 119

Query: 119 QMQKSKDENQFL 130
           + ++S+ E + L
Sbjct: 120 RRRQSQAEREKL 131


>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 231

 Score =  163 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ ++     GF V  A       +    E  P+ +++D  + G+ 
Sbjct: 1   MPKILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTE-APDLIILDIMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  + Q P    + +  L    +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLSVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARL 119

Query: 119 QMQ 121
           + Q
Sbjct: 120 RRQ 122


>gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  163 bits (414), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A +    E  P+ +++D    G    
Sbjct: 16  RILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDML-SEPYPDLVLLDWMFPGGSGI 74

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 75  QLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRR 134

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 135 AAPTALEEPID 145


>gi|86610346|ref|YP_479108.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558888|gb|ABD03845.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 373

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R V +      G+ V  A++  E  E     L+P  ++ D  M  + 
Sbjct: 1   MTTILIVDDDPTIRLVLKRSLERQGYTVEMASNGSEGLEQAHL-LVPGLIICDWMMPDMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +  F   L    + E  I G  AGA+ FL KP +   LR  +R   
Sbjct: 60  GLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGL 119

Query: 119 QMQK----SKDENQFLDA 132
           ++ +     + +   L A
Sbjct: 120 RLHQLSYDLQQQTARLRA 137


>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R++ + +    G+   EA     A E    E  P+ +++D  + G   
Sbjct: 3   KRVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVV-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q     D+ +  +    + E  + G  +GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  VQLAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RVTPTSSDELIE 133


>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 264

 Score =  163 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+ V  A    EA +       P+ +V+D  M G+  
Sbjct: 33  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATP-PDLVVLDIQMPGMDG 91

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
             A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L +  
Sbjct: 92  LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 151

Query: 121 -----QKSKDENQFLD 131
                Q++ D+ + L 
Sbjct: 152 SYAVAQQAADDEETLA 167


>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 342

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G+    A    +A    E    P+ LV+D  M  +   
Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAES-YRPDLLVLDIQMPRMDGL 166

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 224


>gi|158334336|ref|YP_001515508.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158304577|gb|ABW26194.1| two-component response regulator, putative [Acaryochloris marina
           MBIC11017]
          Length = 375

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D   I + + R      G+ V  A+   E      ++L P  ++ D  M    
Sbjct: 1   MVKILIIDDDPITQLLLRRTLEKQGYQVTVASDGQEGLSKA-QQLCPALIICDWMMPVLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     ++  P  +  F   L    D E  IAG  AGA+ FL KP +   LR  +R   
Sbjct: 60  GIGVCQQLKSNPQLSATFFILLTSRSDLEDRIAGLNAGADEFLTKPIDMSELRARVRAGL 119

Query: 119 QM----QKSKDENQFLDA 132
           ++    Q   ++ Q L+A
Sbjct: 120 RLYHLNQDLHEQKQRLEA 137


>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 340

 Score =  162 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G+    A    +A    E    P+ LV+D  M  +   
Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAES-YRPDLLVLDIQMPRMDGL 164

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 222


>gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 229

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA    +      +E  P  +V+D  M G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKV-REPYPELIVLDWMMPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI  ++Q  +   + V  L    + E  + G  AGA+ ++ KPF+ + L   +  + +
Sbjct: 62  IQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RVSPTSVDEVIE 133


>gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
 gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
          Length = 229

 Score =  161 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++ + +    GF    A     A      E  P+ +++D    G    
Sbjct: 4   KILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMI-SEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SSPTSSEEPID 133


>gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
 gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
          Length = 229

 Score =  161 bits (408), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA    +      +E  P  +V+D  M G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKV-REPYPELIVLDWMMPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI  ++Q  +   + V  L    + E  + G  AGA+ ++ KPF+ + L   +  + +
Sbjct: 62  IQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RVSPTSVDEVIE 133


>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 244

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+ V  A    EA +       P+ +V+D  M G+  
Sbjct: 13  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATP-PDLVVLDIQMPGMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
             A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L +  
Sbjct: 72  LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131

Query: 121 -----QKSKDENQFLD 131
                Q++ D+ + L 
Sbjct: 132 SYAVAQQAADDEETLA 147


>gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 248

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+ +  VR + R    + G+ V  A++  E      +   P+ +++D  M G+ 
Sbjct: 22  MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGL-LEARHHRPDLVLLDVMMPGMD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V +L         + G   GA+ ++ KPF+   L   +R   + 
Sbjct: 81  GL-EFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRR 139

Query: 121 QKSKDENQFLDA 132
                 N  L A
Sbjct: 140 SSEPLPNAVLRA 151


>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
           [Syntrophus aciditrophicus SB]
          Length = 245

 Score =  160 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++        GF V +A    EA +       P+ +++D  + G   
Sbjct: 15  KRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNK-PDLVILDLMLPGVSG 73

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    VR+      + V  L  + +    + G   GA+ ++ KPFN   L   +R + +
Sbjct: 74  LDICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLR 133

Query: 120 MQKSK 124
               +
Sbjct: 134 RSSQR 138


>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
 gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
           PCC 7001]
          Length = 273

 Score =  160 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E  E   +ELLP+ ++ D  M      
Sbjct: 47  RLLLVDDEPGLRTAVKAYLEDEGFAVTTANDGEEGWEKA-QELLPDVVISDVMMPCCDGY 105

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +      IAG +AG + ++ KPF+ + L   +R   + 
Sbjct: 106 GLLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDYIPKPFDPDELVARVRNAVRR 165

Query: 121 Q-KSKDENQFLD 131
           Q +   E     
Sbjct: 166 QERLLAEAARFA 177


>gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 229

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A E    E  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEML-SEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SSPTSLEEPID 133


>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  160 bits (406), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V  + +      GF V  A+S  EA     ++  P+ +++D  M G+   
Sbjct: 73  RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQP-PDLVILDIMMPGMDGL 131

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ V +L         + G  AGA+ +++KPF  E L   +R L +  +
Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQ 191

Query: 123 SKDEN 127
           ++   
Sbjct: 192 AERPQ 196


>gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
 gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
          Length = 228

 Score =  160 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +R++         + V +A S        + E++P+ +++D  + G+ 
Sbjct: 1   MVKILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLD-EIVPDLVLLDWMLPGMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F   V++ P   DV +  L    + E  I G   GA+ F+ KPF+   L   ++ + 
Sbjct: 60  GIDFARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVL 119

Query: 119 QMQKSKDENQFLD 131
           +       ++ ++
Sbjct: 120 RRAAPLSGDERIE 132


>gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfobacca acetoxidans DSM 11109]
 gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfobacca acetoxidans DSM 11109]
          Length = 382

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D +    ++ R   +  G+ +  A    EA +   KE  P+ L++D  M     
Sbjct: 29  KKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKEN-PDLLILDIMMPKLDG 87

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +++     ++ V  L  + +    + G   GA+ ++ KPFN + L   +R L  
Sbjct: 88  YEVLRRLKKQDEYRNLPVILLTAKKEIPDKLKGLDIGADDYITKPFNPQELLARVRSLMA 147

Query: 120 MQKSKD---ENQFLDAI 133
           +++ ++   +++ L A+
Sbjct: 148 LREEQERRAQDERLSAL 164


>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
 gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 357

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R+V R    + GF V EAT   EA          + L++D  M GV  
Sbjct: 127 TKILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLL-TGGKWDLLILDLMMPGVDG 185

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    T + +  L         I G   GA+ +++KPF+   L   ++ + +
Sbjct: 186 WSVCREVRK---TTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLR 242

Query: 120 MQK 122
             +
Sbjct: 243 RSQ 245


>gi|315181014|gb|ADT87928.1| Response regulator [Vibrio furnissii NCTC 11218]
          Length = 203

 Score =  159 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 231

 Score =  159 bits (405), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+    A +  EA     +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEAL-KLIREIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNVKKEENIIK 134


>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  159 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+ V  A    EA         P+ +V+D  M G+  
Sbjct: 13  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATP-PDLVVLDIQMPGMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
             A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L +  
Sbjct: 72  LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131

Query: 121 -----QKSKDENQFLD 131
                Q++ D+ + L 
Sbjct: 132 SYAVAQQAADDEETLA 147


>gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrosococcus oceani ATCC 19707]
 gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
 gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +R++        G+    A    +A +    E  P+ +++D  + G+   
Sbjct: 4   TILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRI-NESHPDLILLDWMLPGISGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P   ++ V  L    + E  + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + ++
Sbjct: 123 SAPLASGEVIE 133


>gi|110640660|ref|YP_668388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 536]
 gi|110342252|gb|ABG68489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 536]
          Length = 243

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA    +       E  P  +V+D  M G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVC-EPYPELIVLDWMMPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI  ++Q  +   + V  L    + E  + G  AGA+ ++ KPF+ + L   +  + +
Sbjct: 62  IQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RVSPTSVDEVIE 133


>gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L]
          Length = 1156

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   + R+V  +  +   + +  AT+  EA E       P+ +++D  M  +   
Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +RQ  L +++ V  L        ++ G   G N +L KP ++  L   ++   ++
Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865

Query: 121 QK 122
            K
Sbjct: 866 SK 867


>gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1156

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   + R+V  +  +   + +  AT+  EA E       P+ +++D  M  +   
Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +RQ  L +++ V  L        ++ G   G N +L KP ++  L   ++   ++
Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865

Query: 121 QK 122
            K
Sbjct: 866 SK 867


>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R    + GF V  A+   +A +  +KE  P+ +++D  + G+   
Sbjct: 5   KILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKE-QPDLVILDIMLPGIDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R+     D+ V  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  EVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRR 123

Query: 121 Q-KSKDENQFLDA 132
             K +  ++ + A
Sbjct: 124 ADKVERSDKIIKA 136


>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+    A +  EA     +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEAL-KVIREIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNVKKEENIIK 134


>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+    A +  EA +   +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKII-REIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNVKKEENIIK 134


>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 244

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+ V  A    EA         P+ +V+D  M G+  
Sbjct: 13  QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATP-PDLVVLDIQMPGMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 72  LTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130


>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 231

 Score =  159 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+    A +  EA +   +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKII-REIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNVKKEENIIK 134


>gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 229

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A +    E  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDML-TEPYPDLVLLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ F+ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRR 122


>gi|86605678|ref|YP_474441.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554220|gb|ABC99178.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 374

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R V +      G+ V  A+   E  E     L P  ++ D  M  + 
Sbjct: 1   MTAILIVDDDPTIRLVLKRSLERQGYTVEMASGGLEGLEKAHL-LTPGLIICDWMMPDMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +  F   L    + E  I G  AGA+ FL KP +   LR  +R   
Sbjct: 60  GLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGL 119

Query: 119 QMQK----SKDENQFLDA 132
           ++ +     + +   L A
Sbjct: 120 RLHQLSYDLQQQTARLRA 137


>gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 231

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M    ++L+VD    +R++        G+    A    +A +    E  P+ +++D  + 
Sbjct: 1   MKMAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQI-NEFRPDLILLDWMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+        +++ P   ++ V  L    + E  + G   GA+ ++ KPF+   L   ++
Sbjct: 60  GISGVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIK 119

Query: 116 ELPQMQKSKDENQFLD 131
            + +        + ++
Sbjct: 120 AVLRRSAPLLSGEVIE 135


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + ++ R      G+ V  A    +  E    E  P+ +V+D  + G+ 
Sbjct: 1   MPKILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAE-RPDLIVLDVMLPGMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    + +     ++ V  L    +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARL 119

Query: 119 QMQKSKDENQFLDAI 133
           +  + K+E +  +A+
Sbjct: 120 RRIQ-KEEGREREAV 133


>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 231

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+    A +  EA     +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNII-REIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNVKKEENIIK 134


>gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 229

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    +R++   + +  GF    A    +       E  P+ +++D  + G    
Sbjct: 4   NILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAI-SEPYPDLVLLDWMLPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + ++
Sbjct: 123 SAPTRLEEAVE 133


>gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1651

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+VD +  +R+    +    G  V  AT    A E   +E  P+ ++ D  M      
Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQE-RPDLVLSDVMMPRLDGF 719

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P   D  V  L      E  + G   GA+ +L KPF+   L   +    Q+
Sbjct: 720 GLLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQL 779

Query: 121 QKSKDENQ 128
            + + E +
Sbjct: 780 ARLRRETE 787



 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            ++L+V+    VR     + +D G+ V +A     A    E  +  + L  D  M G L  
Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437

Query: 61   -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118
             E     +       + V +     D   + +G    G    L KP+  E L   +R + 
Sbjct: 1438 TELAR--KARERLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494

Query: 119  QMQKSKD 125
            Q Q  + 
Sbjct: 1495 QTQNPQA 1501



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 13/123 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLV+   +VR     L   F F + EA    +A +    E   + ++ D  + G    
Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDA-KQILSEHAISVMLTDVGLAGKSGV 1594

Query: 63   IAHVRQMPLGTDVFVYYLLMEV---DFEKMI---AGARAGANSFLLKPFNRETLRFAMRE 116
               +       D+ V +L         E+               L KP++   L  A++ 
Sbjct: 1595 DLALEVCAGRPDLRVIFLTGYDLVLTPEQRKVLPHAI------LLRKPYDLLDLIDALKT 1648

Query: 117  LPQ 119
              +
Sbjct: 1649 PLR 1651


>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 231

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+    A +  EA +   +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKII-REIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNVKKEENIIK 134


>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+     R++ ++     GF V  A          E    P+ +++D  M G+   
Sbjct: 5   KILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEA-FKPDIVLLDLMMPGMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V  L  + +    I G   GA+ +++KPF+   L   ++ + + 
Sbjct: 64  EVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRR 123

Query: 121 QKSKD 125
              ++
Sbjct: 124 AGGRE 128


>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1336

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   I  +V  +      + V +AT+  EA E  E   +P+ +++D  M  +   
Sbjct: 872 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 931

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + +  L  +     ++ G   GAN +L KP N+E L   ++   ++
Sbjct: 932 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIRI 991

Query: 121 QKSKDE 126
           +K + E
Sbjct: 992 KKLRTE 997


>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 231

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ ++      +  F A +  +A E C +   P+ +++D  +  + 
Sbjct: 1   MK-ILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELC-RNKNPDLVILDLMLPDMS 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      ++ +  +  + +   ++ G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 59  GLDICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVL 118

Query: 119 QMQ 121
           + +
Sbjct: 119 RRK 121


>gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +  +  +  +  GF V  AT+  +  E   KE  P+ +++D  + G+  
Sbjct: 3   KNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEH-PDLMILDLMLPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++     D+ +  L  + +   ++ G   GA  ++ KPF+ + L   ++ + +
Sbjct: 62  LEVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVLR 121

Query: 120 MQKSKDENQ 128
             +  DE +
Sbjct: 122 RYEQGDETE 130


>gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 277

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    V +V     +  G++V  A     A +       P+ +V+D  + G+  
Sbjct: 20  TRILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAH-RPDLVVLDLMLPGMDG 78

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  V V  L    D +  I G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 79  LEVCRRLRENGP-VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRA 137

Query: 122 K 122
           +
Sbjct: 138 R 138


>gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    G+    A     A +    E  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDML-TEPYPDLVLLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ F+ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122


>gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+V+    +R++        GF V EA    EA+E      LP+ +++D  + G   
Sbjct: 8   KTVLIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERI-ASRLPDMILLDWMLPGTSG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +++     DV +  L    + +  + G  AG + ++ KPF+   L   ++ + +
Sbjct: 67  IDLARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMR 126

Query: 120 MQKSKDENQFLD 131
               ++E++ L+
Sbjct: 127 RTVPENEDKPLE 138


>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 226

 Score =  158 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +R++ +      G+ V  A    E  +        + +++D  +  + 
Sbjct: 1   MEKILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL--NDSIDLIILDLMLPRID 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   VR      D+ +  L  + +    I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 59  GLSFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVL 118

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 119 RRVQKNEE 126


>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 234

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    VR V  H  +  G           A E        + +++D  + G+ 
Sbjct: 1   MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60

Query: 61  E--FIAHVRQ-MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                  +R+       V V  L    D   ++ G   GA+ ++ KPF+   L   +R  
Sbjct: 61  GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120

Query: 118 PQMQKSKD----ENQFLD 131
            + Q+       E + L+
Sbjct: 121 LRRQRMNAQASPEQRKLE 138


>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
 gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium sp. SKA34]
          Length = 1132

 Score =  158 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   +  ++  +     G+ V  A S  +A +  +++  P+ +++D  M  +   E
Sbjct: 721 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQ-RPDLILLDIMMPEMSGYE 779

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L      +  I G   GAN +L KPFN+E L   ++   Q  
Sbjct: 780 VCTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQAS 839

Query: 122 KSKDENQF 129
           K++ E Q 
Sbjct: 840 KTEQEKQR 847


>gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
 gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
          Length = 279

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 53  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 111

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 112 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 171

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 172 RISPMAVEEVIE 183


>gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905]
          Length = 229

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
              S    + ++
Sbjct: 122 RISSMAVEEVIE 133


>gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
 gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
          Length = 230

 Score =  158 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +  +     GF V  A +  E  E    E  P+ +V+D  + G+  
Sbjct: 4   KHILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETL-AEDPPDLVVLDLMLPGMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++      + V  +  + +   ++AG   GA+ ++ KPF+ + L   +R + +
Sbjct: 63  LQVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLR 122

Query: 120 MQKSKDE 126
            ++S DE
Sbjct: 123 RRESADE 129


>gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 237

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    ++++  +     GF V  A +  +A    ++E  P+ +V+D  + G+   
Sbjct: 11  TILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQRE-APDLVVLDVMLPGMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P    + +  L    D + + AG   GA+ ++ KPF+ + L   ++   + 
Sbjct: 70  QICKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRR 129

Query: 121 QKSKDENQ 128
            +  D+++
Sbjct: 130 SRELDQDE 137


>gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 229

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|284051798|ref|ZP_06382008.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 558

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   I  +V  +      + V +AT+  EA E  E   +P+ +++D  M  +   
Sbjct: 94  KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 153

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + +  L  +     ++ G   GAN +L KP N+E L   ++   ++
Sbjct: 154 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIRI 213

Query: 121 QKSKDE 126
           +K + E
Sbjct: 214 KKLRTE 219


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    V ++ +      G+ VF A +  EA +       P+ +V+D  M    
Sbjct: 1   MSKILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKA-NSTKPDLIVLDLMMPEID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R       V +  L  + +    I G   GA+ ++ KPFN   +   ++ + 
Sbjct: 60  GLEVCRQIRMHSR---VPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 110-3]
 gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H263]
          Length = 229

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 231

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++ +      G+ +  A +  EA     +E+  + +++D  +     
Sbjct: 4   KKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNII-REIKFDLILLDLMLPEIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    +D+ V  +  + +    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 63  LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122

Query: 120 MQKSKDENQFLD 131
               K E   + 
Sbjct: 123 RSNFKKEENIIK 134


>gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 230

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+  +   ++ ++     G+ V  A    +A +   KE  P+ +++D  + G+   
Sbjct: 5   KILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKEN-PDLILLDLMLPGIDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V  L  + +    + G   G + +++KPF+   L   ++ + + 
Sbjct: 64  EVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRR 123

Query: 121 QKSKDENQF 129
              + E + 
Sbjct: 124 STEQPEPRR 132


>gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 237

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R        + G+ V + +S  EA E C K   P+ +V D  M  + 
Sbjct: 1   MKKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNP-PDLVVSDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R  P G  +   +L  + + E  I G   GA+ +L+KP N   L   +    
Sbjct: 60  GIEFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQL 119

Query: 119 QMQK 122
           +  +
Sbjct: 120 ERTR 123


>gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 249

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V     +  G++V  A     A         P+ +V+D  + G+   
Sbjct: 16  RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHW-PDLVVLDLMLPGMDGL 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 75  EVCRRMRGHGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSR 133

Query: 123 SKDENQFLDA 132
                  L A
Sbjct: 134 PAAPGHRLGA 143


>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 233

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + K+ R      GF V  A     A     +E  P  +V+D  + G+  
Sbjct: 3   RTILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEH-PALMVLDLMLPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ PL   + +  L   V+    + G   GA+ ++ KPF+   L   +R + +
Sbjct: 62  LDVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLR 121

Query: 120 MQK 122
             +
Sbjct: 122 RSE 124


>gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1648

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+VD +  +R+    +    G  V  AT    A E   +E  P+ ++ D  M      
Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQE-RPDLVLSDVMMPRLDGF 719

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P   D  V  L      E  + G   GA+ +L KPF+   L   +    Q+
Sbjct: 720 GLLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQL 779

Query: 121 QKSKDENQ 128
            + + E +
Sbjct: 780 ARLRRETE 787



 Score = 87.2 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            ++L+V+    VR     + +D G+ V +A     A    E  +  + L  D  M G L  
Sbjct: 1378 TVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLRS 1437

Query: 61   -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118
             E     +       + V +     D   + +G    G    L KP+  E L   +R + 
Sbjct: 1438 TELAR--KARERLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKIRYVL 1494

Query: 119  QMQKSKD 125
            Q Q  + 
Sbjct: 1495 QTQNPQA 1501



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 13/123 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLV+   ++R     L   F F + EA    +A +    E   + ++ D  + G    
Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDA-KQILSEHAISVMLTDVGLAGKSGV 1591

Query: 63   IAHVRQMPLGTDVFVYYLLMEV---DFEKMI---AGARAGANSFLLKPFNRETLRFAMRE 116
               +    +  D+ V +L          +               L KP++   L  A++ 
Sbjct: 1592 DLALEVCAVRPDLRVIFLTGYDLVLTPAQRKVLPHAI------LLRKPYDLLDLIDALKT 1645

Query: 117  LPQ 119
              +
Sbjct: 1646 PLR 1648


>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
 gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
           [Cronobacter turicensis z3032]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RISPMAVDEVIE 133


>gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 229

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  157 bits (399), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + K+ R      GF V  A     A     +E  P+ +V+D  + G+
Sbjct: 1   MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEH-PSLIVLDLMLPGM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +RQ PL   V +  L   V+    + G   GA+ ++ KPF+   L   +R +
Sbjct: 60  DGLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAV 119

Query: 118 PQMQK 122
            +  +
Sbjct: 120 LRRIE 124


>gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197]
 gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
 gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae]
 gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae
           Sd197]
 gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894]
 gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RISPMAVDEVIE 133


>gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 229

 Score =  157 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A     +E  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQL-QEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 AAPTRLEETID 133


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K+ +      GF V  A+    A E   +   P+ +V+D  +  +  
Sbjct: 4   KKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHP-PDLIVLDLMLPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +     + + +  L  + +    + G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 63  LEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRM 122

Query: 122 KSKDEN 127
           ++  + 
Sbjct: 123 EALRDQ 128


>gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
 gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
          Length = 230

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLC-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++      + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + +D
Sbjct: 122 RVSPTSVEELID 133


>gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469]
 gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia fergusonii ATCC 35469]
 gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia fergusonii B253]
 gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A      E  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAML-TEPYPDLVLLDWMFPGGNGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ F+ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122


>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 244

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+ V  A    +A +       P+ +V+D  M  +  
Sbjct: 9   QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAA-YAPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 126


>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 1361

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+VD   I  +V  +      + V +A+S  EA E  E   +P+ +++D  M  +   
Sbjct: 891  KILIVDDDPINLQVLVNYLCLQNYAVTQASSGIEAMEILEAGYIPDLILLDVMMPRMTGY 950

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +R+      + +  L  +     ++AG   GAN +L KP N++ L   ++   ++
Sbjct: 951  EVTRRIRETWPPHQLPIMMLTAKNQVSDLVAGLEVGANDYLSKPLNKDELLARIKTHIRI 1010

Query: 121  QKSKDE 126
            ++ + E
Sbjct: 1011 KQLRTE 1016


>gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
 gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
          Length = 239

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A     KE  P+ +++D    G    
Sbjct: 14  RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 73  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 132

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 133 SAPTRLEETID 143


>gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
 gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium]
 gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
          Length = 229

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638]
 gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  157 bits (398), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1566

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R   + L  D  + V   +      E   +E LP+ ++ D  M G+  F
Sbjct: 397 RILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARE-LPDLVLTDVMMPGLDGF 454

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P    + +  L         + G +AGA+ +L+KPF+   L   +    +M
Sbjct: 455 ELLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKM 514

Query: 121 QKSKDENQFLD 131
            + ++EN   +
Sbjct: 515 AQIREENAHRE 525



 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 6/113 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD     R     L  + G  V    S  EA +       P+ L+ D  M  +    
Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVL-AGSKPDVLLCDIGMPEIDGYM 1505

Query: 62   FIAHVRQMPLGT-DVFV--YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
             I  VR     + +  +    L             +AG    + KP   E L 
Sbjct: 1506 LIKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558


>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. NATL2A]
 gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. NATL2A]
          Length = 242

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF V  A    E  E  +K ++P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQK-MIPDVIISDVMMPRCDGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G +AG + ++ KPF+ + L   ++ + Q 
Sbjct: 75  GLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134

Query: 121 QK 122
           Q+
Sbjct: 135 QE 136


>gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301]
 gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T]
 gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401]
 gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 301]
 gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 2457T]
 gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5
           str. 8401]
 gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella
           flexneri 2002017]
 gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2a str. 2457T]
 gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2747-71]
 gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-671]
 gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2930-71]
 gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-304]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 242

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF V  A    E  E  +K ++P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQK-MIPDVIISDVMMPRCDGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G +AG + ++ KPF+ + L   ++ + Q 
Sbjct: 75  GLLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQR 134

Query: 121 QK 122
           Q+
Sbjct: 135 QE 136


>gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or
           CreC) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933]
 gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227]
 gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           W3110]
 gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89]
 gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1]
 gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A]
 gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS]
 gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739]
 gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5]
 gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94]
 gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11]
 gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1]
 gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88]
 gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a]
 gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989]
 gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39]
 gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026]
 gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606]
 gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B]
 gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736]
 gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Escherichia coli O157:H7 str. EDL933]
 gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli]
 gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150]
 gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227]
 gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K12 substr.
           W3110]
 gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli
           UTI89]
 gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC
           O1]
 gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli HS]
 gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E24377A]
 gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli SMS-3-5]
 gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii CDC 3083-94]
 gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11]
 gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli]
 gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli 55989]
 gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI1]
 gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli S88]
 gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI39]
 gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli ED1a]
 gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli UMN026]
 gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia
           coli LF82]
 gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli B str. REL606]
 gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BL21(DE3)]
 gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli DH1]
 gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15]
 gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator
           [Escherichia coli 042]
 gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli IHE3034]
 gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU
           83972]
 gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146]
 gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator
           [Escherichia coli ETEC H10407]
 gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli W]
 gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1]
 gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 85-1]
 gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 153-1]
 gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 3431]
 gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112]
 gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83]
 gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327]
 gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B]
 gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           G5101]
 gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str.
           493-89]
 gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H
           2687]
 gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli EPECa14]
 gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E128010]
 gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           sonnei 53G]
 gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli LT-68]
 gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1180]
 gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli RN587/1]
 gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli KO11]
 gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1520]
 gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E482]
 gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H120]
 gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H252]
 gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H489]
 gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M863]
 gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA007]
 gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TW10509]
 gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 57-2]
 gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 60-1]
 gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 117-3]
 gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1167]
 gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044]
 gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125]
 gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli STEC_7v]
 gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Escherichia coli AA86]
 gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 155-74]
 gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 5216-82]
 gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 3594-74]
 gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88]
          Length = 229

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36]
 gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36]
          Length = 228

 Score =  157 bits (398), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++        GF V EA    EA +    E  PN +++D  + G   
Sbjct: 3   KRILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLV-EPYPNLILLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H++  P  + + V  L    + E  + G   GA+ ++ KPF+ + L   +  + +
Sbjct: 62  IKYIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMR 121

Query: 120 MQKSKDENQFLD 131
                 ++  +D
Sbjct: 122 RVAPMTQDTVID 133


>gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 279

 Score =  156 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 53  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 111

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 112 IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 171

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 172 RISPMAVEEVIE 183


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score =  156 bits (397), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     G+ V EA    EA      E  P+ +++D  +     +E
Sbjct: 14  VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVL-AERKPDLVLLDWMLPSLSGIE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+ P   ++ +  L    +    I G   GA+ +L KPF+   L   +R L +  
Sbjct: 73  ICRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRA 132

Query: 122 KSKDE 126
           +   +
Sbjct: 133 QPVSQ 137


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + ++ +    + G+    A +  EA     KE  P+ +++D  + G+ 
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  + +    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 62  GYEVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121

Query: 119 QMQ 121
           + +
Sbjct: 122 RRR 124


>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 251

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA     +E  P+ +V+D  M      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQE-QPDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126

Query: 121 QK 122
            +
Sbjct: 127 IE 128


>gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 237

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +R+V +      G+ V+ A +  E  +    +  P+ +++D  M     
Sbjct: 3   KRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVF-HQYQPDLIILDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L  + +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-272]
 gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-227]
          Length = 229

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score =  156 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ R+     G+ +F A +  EA E   KE  P  +++D  +  +   
Sbjct: 5   KILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIA-KEKKPTLILLDVMLPQMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +   +  +  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRR 123

Query: 121 QKSKDENQ 128
              K   +
Sbjct: 124 TLLKSTEE 131


>gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRL-SEPYPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++      + V  +    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQLIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLR 121

Query: 120 MQKSKDENQFLD 131
                +  + ++
Sbjct: 122 RISPMEAEEVIN 133


>gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           pyrifoliae DSM 12163]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G  AGA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 229

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  156 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++ ++     GF V +A +   A +  + E +P+ +++D  + G  
Sbjct: 1   MPKILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSE-VPDIILLDIMLPGQD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++ Q      + +  L    +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLSVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARL 119

Query: 119 QMQKSKDENQFLD 131
           + Q    ENQ L+
Sbjct: 120 RRQTV--ENQVLE 130


>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1114

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   +  ++  +     G+ V  A +  +A    E E  P+ +++D  M  +   E
Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVE-EQRPDLILLDIMMPEMSGYE 765

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L      +  I G   GAN +L KPFN+E L   ++   Q  
Sbjct: 766 VCTILRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQAS 825

Query: 122 KSKDENQFLDAI 133
           K++ E Q   ++
Sbjct: 826 KTEHEKQKNQSL 837


>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
 gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
          Length = 345

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    V +V     +  G+ V  A     A         P+ +V+D  + G+    
Sbjct: 16  VLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAH-RPDLVVLDLMLPGMDGLE 74

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      V V  L    D E  + G   GA+ ++ KPF+   L   +  + + 
Sbjct: 75  VCRRLRERAA---VPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRR 130


>gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 4343-70]
          Length = 229

 Score =  156 bits (396), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      GF VF A    EA E  +KE  P+ +++D  +     
Sbjct: 3   KRILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEE-PDLILLDIMLPHKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKS---YDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKSKDEN 127
            +KS  E 
Sbjct: 119 RRKSGAEE 126


>gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 301

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L++D S ++  V +++    G  V  AT+  E  E     + P+ +++D  M G+ 
Sbjct: 1   MANILVIDDSRLIAHVAKNMLTARGHEVTVATNGEEGLEAVAT-IKPDLILLDLIMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P   D+ V  L  + +    + G  AGA+ ++ KPF    L   +    
Sbjct: 60  GYAVCEKIKGSPATADIPVIMLTSKAETADKVRGLEAGASDYVTKPFEEGELVARVNTHL 119

Query: 119 QMQK----SKDENQFLDAI 133
           ++++     ++ N+ L  +
Sbjct: 120 RIKELYESLQETNRQLQEL 138


>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+   +V+++ R      G+ V  A    EA         P+ +++D  +      
Sbjct: 4   TILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNN-PDLVILDIMLPKKDGW 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R M   ++  +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  TVCREIRAM---SNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRR 119

Query: 121 QKSKDEN 127
               +++
Sbjct: 120 TSLANQD 126


>gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|531494|emb|CAA56927.1| phoB [Shigella flexneri]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
          Length = 248

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+    +  + ++     GF V  A+   EA      E  P+ +++D  +  +  LE
Sbjct: 23  VLIVEDEADILTLLKYNLEKEGFRVATASDGEEAL-LAAGEQTPHIVLLDWMLPLMSGLE 81

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+     D+ +  L    +    + G  +GA+ ++ KPF+   L   MR + + 
Sbjct: 82  VCRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRR 140


>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
 gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    + ++     N   +    A S  EA +  E E  P+ +++D  + G+  
Sbjct: 4   NNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFE-EYSPDLVLLDVMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++  +  L  + +    + G + GA+ +++KPF+   L   +  L +
Sbjct: 63  YQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119

Query: 120 MQKSKDENQ 128
                +  Q
Sbjct: 120 RSAMTESTQ 128


>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio angustum S14]
 gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium angustum S14]
          Length = 1114

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   +  ++  +     G+ V  A S  +A +  +++  P+ +++D  M  +   E
Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQ-RPDLILLDIMMPEMSGYE 765

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L      +  I G   GAN +L KPFN+E L   ++   Q  
Sbjct: 766 VCTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYLQAS 825

Query: 122 KSKDENQFLDAI 133
           K++ E Q   ++
Sbjct: 826 KTEHEKQKNQSL 837


>gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
 gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
          Length = 230

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLC-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++      + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + +D
Sbjct: 122 RVSPTSIEELID 133


>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1207

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   +   +  +  +   + V +A +  +A +   ++ LP+ +++D  M G+   E
Sbjct: 741 ILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLPDLILLDVMMPGMTGYE 800

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+  L   + +  L  +     ++ G   GAN +L KPF+++ L   ++    ++
Sbjct: 801 VTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKELLARIKTHINIK 860

Query: 122 KSKDE 126
           K + E
Sbjct: 861 KLRTE 865


>gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
 gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
          Length = 230

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLC-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++      + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + +D
Sbjct: 122 RVSPTSIEELID 133


>gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
 gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
          Length = 229

 Score =  156 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
 gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           16]
          Length = 1111

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+VD   +  +V        G+ V  A    EA E  E E  P  +++D  M G+    
Sbjct: 707 LLVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEK-PELVLLDIMMPGMSGYQ 765

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ      + V  L      +  + G  AGAN +L KPFN++ L   +R      
Sbjct: 766 VCEKLRQDYDHAQLPVIMLTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHLTAS 825

Query: 122 KSKD---ENQFLD 131
           K++    ENQ L 
Sbjct: 826 KAEQRRIENQQLQ 838


>gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 229

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|332881804|ref|ZP_08449452.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
 gi|332680443|gb|EGJ53392.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
          Length = 1341

 Score =  156 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+LLVD +  + ++   +     + V  A +  EA +  +   + + +V D  M G+  F
Sbjct: 1093 SILLVDDNMQLLEMMEKILATK-YRVLTAENGLEALKQLKAHAV-DLIVSDVMMPGMDGF 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  +    AGA+ +L KPF  + L   +  L + 
Sbjct: 1151 ALCRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLRT 1210

Query: 121  QKSKDENQFLD 131
             +++ +   ++
Sbjct: 1211 YRNRQQAFRME 1221


>gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
 gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   + +  GF    A     A      E  P+ +++D    G    
Sbjct: 4   KILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMI-SEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SSPTSLEEPID 133


>gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895]
 gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 236

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 4/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V +  S  EA E C K   P+ +V D  M  + 
Sbjct: 1   MKKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNP-PDLVVSDVLMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R +P G  +   +L  + + E  I G   GA+ +L KP     L   +  L 
Sbjct: 60  GLEFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALL 119

Query: 119 QM-QKSKDENQFL 130
           +   +   E   L
Sbjct: 120 ERSHRIHAEIVRL 132


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R      G++  EA     A          + +++D  M  + 
Sbjct: 104 MAKILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQL-SGGAFDLVILDLMMPFMD 162

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        +  V  L    +    +AG  +GA+ +++KPF+   L   ++ +   
Sbjct: 163 GMTCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNR 222


>gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
 gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRL-SEPYPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     D+ V  +    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  S+++V+    +  + ++  +  G+ V  A    EA +   +E  P+ +++D  + G 
Sbjct: 42  MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEA-DLLIRETTPDLILLDWMLPGL 100

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R  P   +V +  +    +    I G   GA+ ++ KPF+   L   +R +
Sbjct: 101 SGIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAV 160

Query: 118 PQMQK 122
            +  +
Sbjct: 161 MRRIR 165


>gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
 gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLC-EPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  VNFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ +V+D  M  +  
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATA-YQPDLVVLDIQMPRMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    GT   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 70  LTAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128


>gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
 gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ +  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
          Length = 249

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +  + R+     GF V EA+   EA      E+ P+ +++D  + G   +
Sbjct: 23  TVLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRL-SEVQPDLVLLDWMLPGLSGI 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+ P   D+ +  +   V+ +  +     GA+ ++ KPFN + L+  +R L + 
Sbjct: 82  EVCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRR 141


>gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073]
 gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB
           [Escherichia coli CFT073]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 237

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +R+V +       + V+ A +  E  +       P+ +++D  M     
Sbjct: 3   KRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTH-QPDLIILDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L  + +    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118

Query: 120 M---QKSKDENQFLDAI 133
                + + +   L+ I
Sbjct: 119 RGSHVQIQAKESLLEVI 135


>gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A     KE  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SAPTRLEETID 133


>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +R+V +       + V+ A +  E  +       P+ +++D  M    
Sbjct: 1   MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTH-QPDLIILDLMMPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    ++V +  L  + +    I G   GA+ +L KPF+   L   ++ + 
Sbjct: 60  GWELCGEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R++     +  G+ V  A    EA    + E  PN +V+D  M     
Sbjct: 6   KKILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEH-PNLVVLDVMMPKLDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R L +
Sbjct: 65  YGVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLR 121

Query: 120 MQKS 123
             ++
Sbjct: 122 RTEN 125


>gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
 gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A     KE  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SAPTRLEETID 133


>gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01]
 gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222]
 gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
 gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01]
 gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222]
 gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
          Length = 229

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLC-EPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 383

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD +     +   +  + G+ V  A S   A    E E  P+ +++D +M  +   
Sbjct: 12  NILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEH-PDIILLDINMPNMNGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ V +L    +    +   R G   ++ KPF  E +   +     +
Sbjct: 71  EVCERLKLDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISL 130

Query: 121 QKSKDENQF 129
           ++ + E Q 
Sbjct: 131 RRMQIELQQ 139


>gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS678]
          Length = 229

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A     KE  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALL-KEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SAPTRLEETID 133


>gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
 gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
          Length = 229

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+V+     R+V  +     GF V +A    EA     +E  P+ +++D  + G   +
Sbjct: 7   SVLVVEDEPAQREVLAYNLESEGFRVIKAADGNEAL-LLIEEEQPDLILLDWMLPGTSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P      V  L    +    + G   GA+ ++ KP++   L   ++   + 
Sbjct: 66  EICRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRR 125

Query: 121 QKSKDENQFL 130
            +     + L
Sbjct: 126 SRPATMGERL 135


>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
 gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
          Length = 236

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEN-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 240

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V     +  G++V  A    EA         P+ +V+D  + G+   
Sbjct: 12  RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAH-RPDLVVLDLMLPGMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 71  EVCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSR 129

Query: 123 SKDENQFLDA 132
             +++  L A
Sbjct: 130 PAEQSGALRA 139


>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    + K  +      G+ V  A    EA     +E  P+ +V+D  +    
Sbjct: 1   MPRVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEES-PDLIVLDLMLPKLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E   ++R+    +DV +  L    +    I G   GA+ ++ KPFN   L   ++ + 
Sbjct: 60  GFEVCRNIRK---TSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIM 116

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 117 RRSQSSS 123


>gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 231

 Score =  155 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + ++ +      G+ V EA     A E  +KE LP+ +++D  + G+ 
Sbjct: 1   MK-ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKE-LPDLVILDIMLPGMS 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE   ++R      ++ +  L    +    I G   GA+ +++KPF+   L   ++   
Sbjct: 59  GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARL 118

Query: 119 QMQKSKD 125
           +  + ++
Sbjct: 119 RRLEGRE 125


>gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia
           enterocolitica W22703]
          Length = 279

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 53  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 111

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 112 IQFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 171

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 172 RISPMAVEEVIE 183


>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
          Length = 235

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
 gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
          Length = 594

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD + +  K+         F V  A +   A     K L P+ +++D  M G+  
Sbjct: 6   NKVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQV-KNLKPDIILLDIMMPGMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      D+ V ++         + G + GA  ++ KP   E +   +     
Sbjct: 65  FETCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEVLARVNTHLT 124

Query: 120 MQKSKDENQFLD 131
           ++    +N+ L+
Sbjct: 125 IRHL--QNRLLE 134


>gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    G+   EA    EA     KE  P  +++D  + G    
Sbjct: 4   RVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALV-KEPYPELILLDWMIPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            FI  ++Q  L  ++ +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SAPTATEEVID 133


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   ++  P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-RQTNPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           ATCC 27126]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R++ + +    GF + EA     A+E    E  P+ +++D  + G   
Sbjct: 3   RTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKIC-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q     D+ V  L    + E  I G  AGA+ ++ KPF+ + L   ++ + +
Sbjct: 62  VQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
          Length = 232

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + ++ R      G  V  A     A   C +E LP+ +++D  +    
Sbjct: 1   MAKILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAAL-ACLQEELPDLIILDLMLPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VR       + +  L  + +    + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF+   A     A +    E  P+ +++D    G    
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLL-TEPYPDLVLLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SSPTSLEEPID 133


>gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
 gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia sp. Ejp617]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPLAVEEVIE 133


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +         +    A++  EA +  +++   + +++D  M  +   
Sbjct: 7   KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRD-AFHLVLLDVMMPEMDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A +R     ++V +  L    D    I G + GA+ ++ KPF+   L   +    +   
Sbjct: 66  TACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSH 124


>gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
 gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  155 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P  +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQL-SEPFPELVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
 gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
          Length = 223

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    + ++ +      GF +F A S  +A E   K   P+ +++D  + G+  
Sbjct: 4   TSILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAV-KNFSPDLVLLDLMLPGIDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++  P  + + +  L  + D   ++ G   GA+ ++ KPF+   +   +R + +
Sbjct: 63  LEVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMR 122

Query: 120 MQKSK 124
              ++
Sbjct: 123 RNAAE 127


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A+   E  E    E  P+ +V+D  + G+ 
Sbjct: 1   MTKILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEK-PDLIVLDLMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      DV +  L  + +    I G   GA+ +L KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRR 119

Query: 121 QKSKDE 126
            +S+ E
Sbjct: 120 TESRKE 125


>gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB
           [Shewanella denitrificans OS217]
 gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   +    GF    A     A     +E  P+ +++D    G    
Sbjct: 4   RILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLL-QEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SAPTRLEETID 133


>gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046]
 gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +   +  GF V  A    E       E  P+ +++D  +    
Sbjct: 1   MKKILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAF-HEKNPDLVILDLMLPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+    + V +  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREIRK---TSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 116

Query: 119 QMQKS 123
           + Q+ 
Sbjct: 117 RRQQL 121


>gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R++ + +    GF + EA     A+E    E  P+ +++D  + G   
Sbjct: 3   RTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKIC-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q     D+ V  L    + E  I G  AGA+ ++ KPF+ + L   ++ + +
Sbjct: 62  VQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
 gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKL-SEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M S +L+V+    +  + R+     G+ V EA    EA      E  P+ +++D  +   
Sbjct: 1   MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLV-AEDQPDVVILDWMLPSL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R+ P   D+ +  L    +    I G   GA+ ++ KPF+   L   ++ L
Sbjct: 60  SGIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKAL 119

Query: 118 PQMQK 122
            +  +
Sbjct: 120 LRRAQ 124


>gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RIAPMAVEEVIE 133


>gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044]
 gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
 gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae]
 gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI  +++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 223

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ +   
Sbjct: 121 YTKQEQQEEFQ 131


>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
 gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ +   
Sbjct: 121 YTKQEQQEEFQ 131


>gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
 gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
          Length = 260

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 34  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRL-SEPFPDLVLLDWMLPGGSG 92

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 93  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 152

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 153 RISPMAVEEVIE 164


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   ++  P+ +V+D  M      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-RQTSPDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126

Query: 121 QK 122
            +
Sbjct: 127 VE 128


>gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 229

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++   + +  GF    A     A E   KE  P+ +++D    G    
Sbjct: 4   RILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELL-KEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 123 SAPTRLEETID 133


>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 244

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    + ++     N   +    A S  EA +  E E  P+ +++D  + G+  
Sbjct: 4   NNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFE-EYSPDLVLLDVMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++  +  L  + +    + G + GA+ +++KPF+   L   +  L +
Sbjct: 63  YQVCTEIRK---TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119

Query: 120 MQKSKDENQ 128
                +  Q
Sbjct: 120 RSAMTESAQ 128


>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V  A +  +      K  +P+ +++D  +    
Sbjct: 1   MK-ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMF-KNEMPDLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD     + + R      G++V  A++  EA E       P+ +++D  M  +  
Sbjct: 4   THILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELI-SSRQPDLVILDVMMPHLDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ    + V +  L  + + +  + G   GA+ +++KPF+   L   +R + +
Sbjct: 63  FSTCERIRQ---FSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLR 119

Query: 120 MQKSKD 125
             ++ +
Sbjct: 120 RAQTAE 125


>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  154 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 229

 Score =  154 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
 gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
          Length = 229

 Score =  154 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 223

 Score =  154 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V  A +  +      K  +P+ +++D  +    
Sbjct: 1   MK-ILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMF-KNEMPDLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
 gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
          Length = 229

 Score =  154 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
 gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  M G   
Sbjct: 5   KSVLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIV-DDKPDMVLLDWMMPGASG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EF   +R+     D+ +  L  + D +  I G  AG + ++ KPF+   L   ++ + +
Sbjct: 64  IEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLR 123

Query: 120 M 120
            
Sbjct: 124 R 124


>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus thermophilus ND03]
          Length = 235

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E +  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R++ + +    GF + EA     A+E    E  P+ +++D  + G   
Sbjct: 3   RTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKIC-EPYPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q     D+ V  L    + E  I G  AGA+ ++ KPF+ + L   ++ + +
Sbjct: 62  VQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
 gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 16-3]
 gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + ++ +    + G+    A +  EA     KE  P+ +++D  + G+ 
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  + +    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 62  GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121

Query: 119 QMQ 121
           + +
Sbjct: 122 RRR 124


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + ++ +    + G+    A +  EA     KE  P+ +++D  + G+ 
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  + +    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 62  GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121

Query: 119 QMQ 121
           + +
Sbjct: 122 RRR 124


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 63  MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 121

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 122 GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 178

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 179 RRNQATAQ 186


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   +E  P+ +V+D  M      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREH-PDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKD---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
           turnerae T7901]
 gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Teredinibacter turnerae T7901]
          Length = 235

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R + R       + V EA    EA +    +  P+ +++D  M G   
Sbjct: 4   KKILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVV-DTRPDLILLDWMMPGVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EF   ++   +  ++ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IEFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLR 122

Query: 120 MQKSKD 125
              S  
Sbjct: 123 RSDSLS 128


>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 237

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +R+V +       + V+ A +  E  +       P+ +++D  M     
Sbjct: 3   KRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTH-QPDLIILDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L  + +    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ LV+D  M  +  
Sbjct: 13  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKA-ASYRPDLLVLDIQMPRMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 72  LTAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130


>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
          Length = 235

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E +  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GL-EIVKEIRKTSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +   +  G+ VF A    EA E   +E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKV-REVEPDLILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 230

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+V+    +R++        G+ + EA+ V EA E      LP+ +++D  + G   
Sbjct: 4   KTILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQL-SHKLPDLVLLDWMLPGASG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EF   +++  +  DV +  L    + E  ++G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 63  IEFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLR 122

Query: 120 MQKSKDE 126
                 E
Sbjct: 123 RASPDSE 129


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +      G+          A +    E  P+ +++D  +  +   
Sbjct: 7   KILIVDDDENICEIIKMYLESSGYSTECCYDGKSA-QTAFYEYKPDLVLLDVMLPHMDGI 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     +  V  L  + +    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKE---CETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 121 QKSKDENQ 128
              ++E++
Sbjct: 123 YNVENEDK 130


>gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
 gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKIC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 223

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V  A +  +      K  +P+ +++D  +    
Sbjct: 1   MK-ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMF-KNEMPDLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 1139

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D +  +R     L     + V        A +   K   P+ ++ D  M      
Sbjct: 645 RILLADDNADMRDYVMRLLKGS-YRVEAVADGEAALKAALKHP-PDLILSDIMMPRLDGF 702

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VR  P    + V  L      E  + G   GA+ +L KPF+   L   +R   +M
Sbjct: 703 GLLREVRNNPSTRLIPVILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARVRSHLRM 762

Query: 121 QKSKDE 126
            + + E
Sbjct: 763 ARLRQE 768


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ ++     G+ VF A    EA E  E E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
 gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G+ V EA    EA E    E     +++D  M  +   
Sbjct: 15  KILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPKMDGW 74

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      V +  L    D    + G   G + ++ KPF+ + L   +  L + 
Sbjct: 75  QTCREIRQSSK---VPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRR 131

Query: 121 QKSKDENQFLDA 132
               D ++ ++A
Sbjct: 132 SNVLDADEHVEA 143


>gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
 gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLM-EPYPDMILLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RVSPTSLEEAIE 133


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R      G+ + EA +   A E   K+   + +++D  M G+ 
Sbjct: 1   MK-ILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDS-FDLVILDLMMPGLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L  + +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 59  GWTVCKVLRKETK---IPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVL 115

Query: 119 QMQKSKDENQFL 130
           +  + +   + L
Sbjct: 116 RRLEGEPTKEHL 127


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      GF V  A    EA E   +E  P+ +++D  +     
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEK-PDLILLDIMLPNKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  MEVCREVRKQFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKSKDENQF 129
             ++  ++Q 
Sbjct: 120 RHQTSGDDQL 129


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    +R++ R      GF V  A    EA +   K   P  +++D  +  +    
Sbjct: 6   ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKA-KSTTPQLIILDLMLPKLDGWD 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+    ++V +  L  + +    + G   GA+ +L KPF+   L   ++ + +  
Sbjct: 65  VCREVRK---FSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRA 121

Query: 122 KSKDE 126
             +++
Sbjct: 122 TPEEQ 126


>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
 gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
          Length = 233

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   + +  GF   EA  + +A      E  P+ +++D  + G   
Sbjct: 3   RKILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKI-HEPYPDLILLDWMLPGGTG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q     ++ +  L    D +  + G  AG + F+ KPF+ + L   ++ + +
Sbjct: 62  VSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
 gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA    +A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKIC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
 gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 229

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKIC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 237

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +R+V +       + V+ A +  E  +       P+ +++D  M     
Sbjct: 3   KRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTH-QPDLIILDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L  + +    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus CNRZ1066]
          Length = 235

 Score =  154 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E +  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GL-EIVKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 327

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V +V        G  V  A     A         P+ +V+D  + G+    
Sbjct: 19  VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R       V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 78  VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    + +  R+     G+ V  A+   +  E   +E  P+ +V+D  +  + 
Sbjct: 1   MPTILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREP-PDLIVLDIMLPRLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ    +DV +  L    D    IAG   GA+ ++ KPF+       +R + 
Sbjct: 60  GFSVCRILRQE---SDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIM 116

Query: 119 QMQKSK---DENQFLDA 132
           +  + +    E + L+A
Sbjct: 117 RRSERQPRTSEREVLNA 133


>gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
 gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
          Length = 229

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ +   +     G+ V  A     A +    E  P+ +V+D  + G+  
Sbjct: 3   RKILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSE-RPDLIVLDIMLPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+        +  L    D    + G   GA+ ++ KPF R  L   +R L +
Sbjct: 62  LEVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + ++ +    + G+    A +  EA     KE  P+ +++D  + G+ 
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  + +    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 62  GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVL 121

Query: 119 QMQ 121
           + +
Sbjct: 122 RRR 124


>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 243

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E    + +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFY-DSVPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
 gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116]
 gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
          Length = 229

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R      G++  EA     A          + +++D  M  + 
Sbjct: 72  MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLL-SGGGFDLVILDVMMPFMD 130

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        +  V  L    +    +AG   GA+ +++KPF+   L   ++ +   
Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190

Query: 121 QKSKDE 126
              + E
Sbjct: 191 TMPRSE 196


>gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103]
          Length = 267

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A+   +A      +   + L++D  M    
Sbjct: 36  MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL--DNSIDLLLLDVMMPKKN 93

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 94  GIDTLKELRQQ---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 150

Query: 119 QMQKSKDENQF 129
           +     ++ Q 
Sbjct: 151 RRSNWSEQQQQ 161


>gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 248

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+++    +R+V +      G+ V+ A +  E  +       P+ +++D  M   
Sbjct: 9   MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTH-QPDLILLDLMMPKK 67

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +RQ    ++V +  L  + +    I G   GA+ ++ KPF+   L   ++ +
Sbjct: 68  DGWELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQII 124

Query: 118 PQMQKS--KDENQFLDAI 133
            +        E +FL  +
Sbjct: 125 LKRGNQIPIQEEEFLSEV 142


>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus LMG 18311]
          Length = 235

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E +  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +   +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    + ++        GF V  A +  EA E    E  P+ +V+D  M G+  F
Sbjct: 6   KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAEN-PDLIVLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    GT   V +L  +   E  + G  AG + ++ KPF+ + +   +R + +  +
Sbjct: 65  EVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124

Query: 123 SKDEN 127
           S  E 
Sbjct: 125 SVQEE 129


>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 230

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++LLV+    ++++ +      G  V  A     A     K  LP+ +++D  + G+  +
Sbjct: 4   NILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHAL-KFLKTTLPDVILLDWMLPGMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R       V +  L    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +   + ++
Sbjct: 123 RAPQMTEEAVE 133


>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+ +  +R++ R    + G+ V  A++  E      +   P+ +++D  M G+ 
Sbjct: 1   MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGL-LETRHHPPDLILLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V +L         + G   GA+ +L KPF+   L   +R L + 
Sbjct: 60  GL-EFLRKYRADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRR 118


>gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E ++ P+ +++D  +     
Sbjct: 5   KKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVE-DIQPDLILLDIMLPQKDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 64  MEVCREIRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 120

Query: 120 MQKSKDEN 127
             + + E 
Sbjct: 121 RHQQRQEQ 128


>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 237

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 9/137 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +R+V +       + V+ A +  E  +       P+ +++D  M     
Sbjct: 3   KRILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTH-RPDLIILDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L  + +    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILR 118

Query: 120 MQK---SKDENQFLDAI 133
                  + E   L+ I
Sbjct: 119 RGSHVPIQAEESLLEVI 135


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   +E +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETF-REEVPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
 gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
          Length = 229

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA    +A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKIC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
 gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
 gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  154 bits (391), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 227

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+ +  VR + R    + G+ V  A++  E      +   P+ +++D  M G+ 
Sbjct: 1   MKTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGL-LEVRHHRPDLVLLDMMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V +L         + G   GA+ ++ KPF+   L   +R   + 
Sbjct: 60  GL-EFLRRFRAAEHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRR 118


>gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++ +      G+ V  A+   EA     +E  P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRET-PDLIVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +  L + 
Sbjct: 69  GVCLELRKQ---SDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRR 125

Query: 121 Q 121
           +
Sbjct: 126 R 126


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+    A S  EA    ++E +P+ +V+D  + G+  F
Sbjct: 5   KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKRE-MPDLVVLDLMLPGIDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +  ++ +  L  + +   ++ G   GAN ++ KPF+   L   +R + + 
Sbjct: 64  EVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123

Query: 121 Q 121
           +
Sbjct: 124 R 124


>gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4]
 gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V  A +  +      K  +P+ +++D  +    
Sbjct: 1   MK-ILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMF-KHEMPDLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYEVCREIRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD +  + ++   +  + GF V  A S  +A     +   PN +++D  M  +
Sbjct: 1   MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E  + +R+     D+ + +L  +      + G   GA+ ++ KPF+ E L   +R  
Sbjct: 61  SGYELCSQIRRE---WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAH 117

Query: 118 PQMQKSKDE 126
            +  +   +
Sbjct: 118 LRRYERIRK 126


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          +L    GF V  A    EA    E++   + +++D  + G+ 
Sbjct: 1   MSRILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSA-DLILLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VRQ    ++V V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQVRQR---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 119 QMQKSKDE 126
           + Q  ++E
Sbjct: 117 RRQGEQEE 124


>gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A   C  E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSAL-ACLSEPYPDLVLLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQIIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 228

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+     R++ ++     GF V  A               P+ +++D  M G   
Sbjct: 4   QKILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHA-FKPDIILLDLMMPGTDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    ++  P    + V  L  + +    I G   GA+ +++KPF+   L   ++ + +
Sbjct: 63  LEVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILR 122

Query: 120 MQKSKDEN 127
              + + N
Sbjct: 123 RYGAPEPN 130


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA +  + E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVD-EVHPDLILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 RQ+    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-RQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 QKS 123
           Q +
Sbjct: 119 QGA 121


>gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRL-AEPYPELVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ V +A    EA +   +E + +  ++D  + G+  
Sbjct: 16  KKILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDV-DMFIVDIMLPGMDG 74

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R M    +  V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 75  FELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 134

Query: 120 M 120
            
Sbjct: 135 R 135


>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQL-TEPYPELVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                  ++ ++
Sbjct: 122 RISPMAVDEVIE 133


>gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
 gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1341

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+LLVD +  + ++   +     + V  A +  EA E  +   + + +V D  M G+  F
Sbjct: 1093 SILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAV-DLIVSDVMMPGMDGF 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  +    AGA+ +L KPF  + L   +  L   
Sbjct: 1151 ALCRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLHT 1210

Query: 121  QKSKDENQFLD 131
             +++ +   ++
Sbjct: 1211 YRNRQQAFRME 1221


>gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
 gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
          Length = 229

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score =  154 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + R      GF   EA     A     +    + +++D  M  + 
Sbjct: 45  MAKILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGG-IDLVILDIMMPFMD 103

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                           V  L    +    +AG   GA+ +++KPF+   L   ++ +   
Sbjct: 104 GMTCLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLAR 163

Query: 121 QKSKDEN 127
              + E+
Sbjct: 164 TMPRTED 170


>gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae]
          Length = 229

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  +  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   ++  P+ +V+D  M      
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIF-RQTEPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V     +  G++V  A     A         P+ +V+D  + G+   
Sbjct: 22  RVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHW-PDLVVLDLMLPGMDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 81  EVCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTR 139


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ ++     G+ VF A    EA E  E E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
 gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
          Length = 229

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA E  E+E  P+ +++D  + G+ 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEEN-PDLIILDLMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TENIE 123


>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++    F   GF V  AT+  E  E   ++  P  +++D  + G+   
Sbjct: 5   RILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQK-PALVLLDLMLPGMSGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++MP   DV V  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  DVCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKR 123

Query: 121 QKSKDEN 127
            +   EN
Sbjct: 124 AQGVAEN 130


>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
 gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
           V453]
          Length = 1031

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLVD   +  +V R L     + +  A++  +A E        + ++ D  M G+   
Sbjct: 698 TVLLVDDDPVNLQVLRSLLFAENYNLLTASNGVQALEHIRSGQGIDLVITDWMMPGMSGL 757

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+     ++ +  L      E +  G +AGAN FL KP + + LR  +R L ++
Sbjct: 758 QLCRTVREQHTLFELPILMLTARSLPEDVRTGLQAGANDFLRKPVDADELRARVRNLLEL 817

Query: 121 QKSKDE 126
           ++S  +
Sbjct: 818 RRSVRQ 823


>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
 gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 228

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L++D    +R+V R       F V EA    EA         P+ +++D  + G  
Sbjct: 1   MTTILVIDDEPDIREVMRFALESSDFRVMEAGHADEA-RKLLSNETPDLILLDWMLPGRS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++Q P    + +  +    + E  + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 60  GLELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVL 119

Query: 119 QMQK 122
           +  K
Sbjct: 120 RRAK 123


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+    +  + ++     GF V  A+   EA      E  P+ +++D  +  +  LE
Sbjct: 9   ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEAL-LLANEQAPHLVLLDWMLPLMSGLE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+ P   D  V  L    +    + G  +GA+ ++ KPF+   L   MR + + 
Sbjct: 68  VCRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRR 126


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA +  + E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVD-EVHPDLILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 RQ+    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-RQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 Q 121
           Q
Sbjct: 119 Q 119


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  A    +A + C KE   + +V+D  M    
Sbjct: 1   MSRILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKED-FDLIVMDIMMPDTD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  +++    D+ V  L         + G   G + ++ KPF+   L   ++ +   
Sbjct: 60  GFTAC-KKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINR 118

Query: 121 QK 122
            K
Sbjct: 119 SK 120


>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 247

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +   +   P+ +V+D  M      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTF-RNTDPDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126


>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 246

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ +V+D  M  +  
Sbjct: 13  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAA-YRPDLVVLDIQMPRMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 72  LTAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130


>gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis FV-1]
 gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92]
 gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates Pi uptake (OmpR family) [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 257

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +LLP+ +V+D  +  V 
Sbjct: 1   MPRILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKG-QALALQLLPDLIVLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSL-SEPYPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H  +  GF + EA +  EA +  E  +  + +++D  M  + 
Sbjct: 1   MARILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLET-VKVDLVIMDIMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      DV +  L  + + ++ + G   GA+ +L+KPF+   L   ++ L 
Sbjct: 60  GWELCRELR---DYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYR 120


>gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri VA-6]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLLGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
 gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
          Length = 232

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++        G+   EA++  +A      E  P  +++D  + G   
Sbjct: 6   KKILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEH-PEMILLDWMLPGTSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LEF   +++     +V +  L  + + +  + G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 65  LEFARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLR 124

Query: 120 M 120
            
Sbjct: 125 R 125


>gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+    A    +A +       P+ +V+D  M  +  
Sbjct: 8   QRILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKA-ASYAPDLIVLDIQMPRMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 67  LTAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 125


>gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
 gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
          Length = 229

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1431

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD +  +R+  + L +   ++V  AT    A E    + LP+ ++ D  M      
Sbjct: 608 RILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEAL-ADHLPDLVLTDVMMPRLDGF 665

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
             ++ +R      ++ +  L      E  + G  AGA+ +L+KPF+   L   +    + 
Sbjct: 666 GLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATLKL 725

Query: 120 ---MQKSKDENQFL 130
               + + ++ Q L
Sbjct: 726 AQLRRDAMEQQQTL 739



 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD     R+    L    G  V  A S  EA +   +   P+ L+ D  M  +    
Sbjct: 1310 VLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSP-PDILLSDIGMPDMDGYM 1368

Query: 62   FIAHVRQMPLGT--DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +  +R +P      +    L             + G    + KP + + L  A+  L  
Sbjct: 1369 LMRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVNLID 1428

Query: 120  MQ 121
            ++
Sbjct: 1429 IK 1430


>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+ D    +R++    F   GF V EA    EA    +    P+ +++D  M     
Sbjct: 5   QTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGK-PDIILLDIMMPVLDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR++   +D+ +  L  +   +  I G   GA+ ++ KPFN   +   ++ + +
Sbjct: 64  LEVCKQVRKI---SDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLR 120

Query: 120 MQKS 123
              +
Sbjct: 121 RTNA 124


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V+ A    EA E    E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKV-AEIEPDLILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
 gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
          Length = 254

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +RK+     +  G+ V  A+   EA     +E +P+ +++D  M      
Sbjct: 16  KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQE-MPDVVILDIMMPKLDGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 75  GVCQEIRKD---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131

Query: 121 QKSKD 125
                
Sbjct: 132 TNKAA 136


>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
 gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum 3TCK]
          Length = 1117

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+VD   +  +V  +     G+ V  A S  +A +  E++  P  +++D  M  +   E
Sbjct: 711 LLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQ-QPALILLDIMMPEMSGYE 769

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L      +  I G  +GAN +L KPFN+E L   +    Q  
Sbjct: 770 VCHILREEHSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQAG 829

Query: 122 KSKDENQFLDAI 133
           K++ + Q   A+
Sbjct: 830 KTEVQRQKNAAL 841


>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 243

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +    E +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIF-HEAVPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
 gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
          Length = 234

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 8   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 66

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 67  IQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 126

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 127 RISPMAVEEVIE 138


>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 228

 Score =  153 bits (389), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD   +V+ + R      GF V  A    EA         P+ +++D  +  +  
Sbjct: 4   NTILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFAN-PDLVILDIMLPKMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+        +  L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  WAVCREIRK---TMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLR 119

Query: 120 MQK 122
             +
Sbjct: 120 RAR 122


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+ V  A    E  E    +L P+ +++D  M  +   
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKF-NQLKPDMVLLDVMMPRMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++    +  V  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  EVCRRIRKLG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120


>gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
 gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRL-AEPYPELVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    V +V        GF V       EA      E +P+ +V+D  + G+  
Sbjct: 31  RRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAV-RVATERMPDLVVLDRMLPGLDG 89

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L      E  + G  AGA+ +L KPF+   L   +R + +
Sbjct: 90  LEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLR 149

Query: 120 M 120
            
Sbjct: 150 R 150


>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++     ++FG+   EA +  EA    E +   +++V+D  M  +   
Sbjct: 5   NVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEIQ 131


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +      G+ VF A    EA E  E E+LP+ +++D  +    
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVE-EVLPDLIILDLMLPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANL 116

Query: 119 QMQKSKDEN 127
           +   +    
Sbjct: 117 RRHDNAKTQ 125


>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 223

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              +++ + + 
Sbjct: 121 YTKQEQQEEVQ 131


>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A +       P+ +V+D  M  +  
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATA-YRPDLVVLDIQMPRMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 70  LTAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128


>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 243

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E       P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-HNTTPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +   +  +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTF-RNTIPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +      G+          A+     E  P+ +++D  +  +   
Sbjct: 7   KILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFF-EYKPDLVLLDVMLPHMDGI 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V  L  + +    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKESE---TPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 121 QKSKDENQ 128
              ++E++
Sbjct: 123 YNVENEDK 130


>gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 231

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+V+    ++++ R+  N  G+  V    S  EA      E  P+ +++D  + G+  
Sbjct: 5   KILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAA-TEFAPDLILLDLMLPGMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++     + + +  L  + +   ++ G   GA+ +L KPF+ + L   ++ + +
Sbjct: 64  LAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVLR 123

Query: 120 MQKSKD 125
             K  D
Sbjct: 124 RVKPSD 129


>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 243

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +    E +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIF-HEAIPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
           HTCC2999]
          Length = 228

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    +R++ + +    GF V EA     A +    E  P+ +++D  + G 
Sbjct: 1   MSRSILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMV-EPYPDLVLLDWMLPGG 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                    ++     ++ V  L    + +  I G  AGA+ ++ KPF+ + L   ++ +
Sbjct: 60  SGVQLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAV 119

Query: 118 PQM 120
            + 
Sbjct: 120 MRR 122


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAN-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 235

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + ++ R    + G+ V  A     A +FC ++ +P+ +++D  + G+   
Sbjct: 5   TILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQ-VPDLIILDIMLPGIDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L  + +    + G   GA+ ++ KPF    L   ++ L + 
Sbjct: 64  EVCKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRR 123

Query: 121 QKSKD 125
            ++ D
Sbjct: 124 TENND 128


>gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 237

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +    + GF    A     A E+ + +  P+ +V+D  + G+ 
Sbjct: 1   MK-ILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQ-QPDLIVLDLMLPGLD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +RQ P   D ++  L  + +    + G   GA+ +L+KPF+   L   +R L 
Sbjct: 59  GLEVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++      + V  AT   EA +    E   +++++D  +  + 
Sbjct: 1   MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEP-FDFIILDLMLPSLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GLDVTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERR 119

Query: 121 QKSKDE 126
            +S+ +
Sbjct: 120 SQSQPQ 125


>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
 gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
          Length = 242

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA    + E  P+ +V+D  M      
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFD-EADPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     +  G+ +  A    EA E  E E  P+ +V+D  M  +   
Sbjct: 6   KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEK-PDLIVLDVMMPRMNGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    +    I G   GA+ +L KPF+ + L   ++ + + 
Sbjct: 65  QVCQTLRESTG---VPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRR 121


>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
 gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
          Length = 233

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+V+    ++++     +  G  V  A    +A+     E LP+ +++D  + G   
Sbjct: 3   TTILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAE-LPDLILLDWMLPGASG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +R       V V  L  +      + G  AGA+ ++ KPF+ + L   ++ + +
Sbjct: 62  ITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLR 121

Query: 120 MQKSK 124
            +  +
Sbjct: 122 RRAPQ 126


>gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Angola]
 gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis Angola]
          Length = 230

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 4   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 63  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 122

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 123 RISPMAVEEVIE 134


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H + ++ R +    GF V  A     A +   +   P+ +++D  + G+ 
Sbjct: 1   MAKILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKE-TENYRPDLILLDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+ P   D+ V  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARL 119

Query: 119 QMQ 121
           + +
Sbjct: 120 RRR 122


>gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
 gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
          Length = 229

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  +  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
 gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
          Length = 236

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++LLV+    ++++     +  G  V  A     A +   ++ LP+ +++D  + G+  +
Sbjct: 4   NILLVEDEPAIQELIAANLSRAGHHVVRAADAEAA-QRLVRDALPDLVLLDWMLPGMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F   +R      ++ +  L    + +  +AG   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DFARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRR 122

Query: 121 QKSKD 125
           +  + 
Sbjct: 123 RAPQA 127


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRK-TEPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
 gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
          Length = 235

 Score =  153 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++LLV+    ++++     +  G  V  A+   EA +   ++ LP+ +++D  + G+  +
Sbjct: 4   NILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRL-RDALPDLVLLDWMLPGMTGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   +R      ++ +  L    + +  +AG  +GA+ ++ KPF+   L   +  + + 
Sbjct: 63  EFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRR 122

Query: 121 QKSKDENQFLDA 132
           +  +     ++A
Sbjct: 123 RAPQTTEDAVEA 134


>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 235

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+ D      ++        GF VFEA    +A    E +L P+ +++D  M  +  +
Sbjct: 5   KILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVE-DLQPDLIILDWMMPHMSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E     R      D+ V  L    +      G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 64  EVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRR 123

Query: 121 QK 122
            +
Sbjct: 124 AR 125


>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 240

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R+         G+ V        A E  EK    + +++D  +  +  
Sbjct: 6   KRILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHS-FDLIILDLMLPKLSG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R +   ++V +  L  + + E  I G   GA+ +L+KPF+   L   +R L +  
Sbjct: 65  -ERVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRA 123

Query: 122 KSKDE 126
            S+ E
Sbjct: 124 HSEAE 128


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSD-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +    + G+         EA+E    E  P+ +++D  +  +   
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFL-EYKPDLVLLDIMLPHIDGV 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    + + +  L  + D    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKD---STIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
               +EN+  +A+
Sbjct: 123 YNVDNENK--EAL 133


>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 1383

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D +  +R+  + L + + + V        A E   +   P+ ++ D  M      
Sbjct: 631 RILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHP-PDLVLSDVMMPRLNGF 688

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
           E +  +R+ PL  ++ +  L      E ++ G ++GA+ +L+KPF+   L   +    + 
Sbjct: 689 ELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATLKM 748

Query: 120 ---MQKSKDENQFLDA 132
               Q++  + Q L A
Sbjct: 749 AQLRQQAAQKEQKLRA 764


>gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 235

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 9/135 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    +R++        G+ V  A     A +        + +++D  +     LE
Sbjct: 3   ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRA---PEADLVLLDIMLPEVDGLE 59

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               ++  P  + + +  L  + +    + G   GA+ +++KPF+   L   ++ + +  
Sbjct: 60  VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119

Query: 121 ---QKSKDENQFLDA 132
              QK   EN+  + 
Sbjct: 120 ASVQKGSRENKEREE 134


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E        + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELF-THGGIDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTTLCRRIREQSR---VPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  +S  + 
Sbjct: 117 RRNQSAQQQ 125


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+V+    +R +        GF            +F +K+  P+ +++D  + G   
Sbjct: 3   TSVLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQ-QPDMILLDWMLPGIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EFI  +R      ++ V  L  + + E M+ G   GA+ ++ KPF+   L   +R + +
Sbjct: 62  IEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLR 121

Query: 120 MQK--SKDENQFLDA 132
             +  S DE Q L +
Sbjct: 122 RCQPDSSDEGQQLQS 136


>gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 229

 Score =  153 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    +R++        GF V  A +  +A    E+   P+ LV+D  +  +  F
Sbjct: 13  TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQND-PDLLVLDVMLPDMDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + V +L    D    I G   G + ++ KPF+ E +   +R + +   
Sbjct: 72  TVTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131

Query: 123 SKDEN 127
           + DE 
Sbjct: 132 ALDEE 136


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E E +P+ +++D  +     
Sbjct: 3   KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-ETMPDLILLDIMLPLKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKSKDENQ 128
                   +
Sbjct: 119 RHAQTANQE 127


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF VF A    EA E   KE+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAF-KEVQPDLILLDLMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   +D  +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLDVA-REIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRR 118


>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
 gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
          Length = 1131

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+VD   +  +V  +     G+ V  A S  +A +  E++  P  +++D  M  +   E
Sbjct: 725 LLVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQ-QPALILLDIMMPEMSGYE 783

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L      +  I G  +GAN +L KPFN+E L   +    Q  
Sbjct: 784 VCHILREEYSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHLQAG 843

Query: 122 KSKDENQFLDAI 133
           K++ + Q   A+
Sbjct: 844 KTEVQRQKNAAL 855


>gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 356

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD +    ++ R      G+   EA    EA +    E+ P+ +++D  M  +  
Sbjct: 6   QTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVY-EVYPDLIILDVMMPKMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++       + +  L  + D E  + G   GA+ ++ KPF+   L   +R L  
Sbjct: 65  YEVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSARVRSLIT 124

Query: 120 MQKSKD---ENQFLDAI 133
            +++ +   E +  +++
Sbjct: 125 RKETAEKVIEEEKTESV 141


>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 231

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R+     GF V EA     A E        + +V+D  + G+ 
Sbjct: 1   MARILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTG-RIDLVVLDIMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ     D+ V  L         + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLTVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARL 119

Query: 119 QMQKSKDENQ 128
           +      E +
Sbjct: 120 RRHVPVQEAR 129


>gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB,
           [Edwardsiella ictaluri 93-146]
 gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative
           [Edwardsiella ictaluri 93-146]
          Length = 229

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R +   +    G+   EA S   A      E  P+ +++D  + G    
Sbjct: 4   RILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLC-EPYPDLILLDWMLPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +++ P   D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +    + G+      +  EA+E    E  P+ +++D  +  +   
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFL-EYKPDLVLLDIMLPHIDGV 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    + + +  L  + D    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKD---STIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
               +EN+  +A+
Sbjct: 123 YNVDNENK--EAL 133


>gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 229

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A E    E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMC-EPYPELILMDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  L   + V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A +       P+ +V+D  M  +  
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAA-YRPDLVVLDIQMPRMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 70  LTAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  153 bits (388), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+ +      GF V  A    +A E  + E  P+++++D  +  + 
Sbjct: 1   MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSE-QPDFIILDLMLPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ     +  +  L  + D    I G   GA+ +L KPF+   +   ++ + 
Sbjct: 60  GMDVCKTLRQERN--NTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAIL 117

Query: 119 QMQKSKDE 126
           +  ++  E
Sbjct: 118 RRFQNTPE 125


>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    V ++ R      G+ V  A     A E   +   P+ +V+D  M G+ 
Sbjct: 1   MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELA-RSRNPDLIVLDLLMPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++ P    + +  L    D    + G   GA+ ++ KPF+   L   +    
Sbjct: 60  GYSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARL 119

Query: 119 QMQKSKD 125
           +  K ++
Sbjct: 120 RRDKKEE 126


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +    + G+      +  EA+E    E  P+ +++D  +  +   
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFL-EYKPDLVLLDIMLPHIDGV 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    + + +  L  + D    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKD---STIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
               +EN+  +A+
Sbjct: 123 YNVDNENK--EAL 133


>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 235

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++      + V  A    +A      E   + +++D  +  + 
Sbjct: 1   MSRVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEK-FDVILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  +  +      + G   GA+ ++ KPF+   +   M+ + + 
Sbjct: 60  GVEVTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRR 119

Query: 121 QKSKD 125
              ++
Sbjct: 120 YHEEE 124


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +      G+ VF A    EA E  E E+LP+ +++D  +    
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVE-EVLPDLIILDLMLPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREVRKN---HDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANL 116

Query: 119 QMQKSKD 125
           +   +  
Sbjct: 117 RRHDNAK 123


>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 243

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 9   QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEA-YAPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    + ++ ++        V  A    E     ++E  P+ +++D  +    
Sbjct: 1   MAKILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEP-PDLIILDVMLPKVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R  P  + + +  +    +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANL 119

Query: 119 QMQK 122
           +  +
Sbjct: 120 RRAQ 123


>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 243

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 9   QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAES-YAPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSE-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 225

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +  +        G+    A       E    +  P+ +++D  + G++
Sbjct: 1   MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQP-PDLILLDLMLPGMM 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++      + V  L    +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GMEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis KIM 10]
 gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
 gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM
           10]
 gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis
           D106004]
 gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis
           D182038]
 gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
          Length = 239

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 13  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARL-SEPFPDLVLLDWMLPGGSG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 72  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 132 RISPMAVEEVIE 143


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++      + V  AT   EA +    E   +++++D  +  + 
Sbjct: 1   MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEP-FDFIILDLMLPSLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GLDVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERR 119

Query: 121 QKSKDE 126
            +S+ +
Sbjct: 120 SQSQPQ 125


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+LLV+     R+V  +     GF V  A +  EA      E  P+ +V+D  +     +
Sbjct: 7   SVLLVEDEPAQREVLSYNLEADGFRVTTAENGEEAL-LLVDEAAPDIIVLDWMLPNVSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      +V +  L    +    + G   GA+ +++KP++   L   +R L + 
Sbjct: 66  EVCRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRR 125

Query: 121 QKSKDENQFLD 131
            +     + L+
Sbjct: 126 SRPSAVGERLE 136


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E E +P+ +++D  +     
Sbjct: 3   KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-ETMPDLILLDIMLPLKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKSKDENQ 128
                   +
Sbjct: 119 RHAQTANQE 127


>gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio cholerae LMA3894-4]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++  +  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +  + +      GF V EA    +A +   K    N +++D  +  +   
Sbjct: 5   RILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEY-NLIILDLMLPVIDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+    +D+ +  L    +    + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 64  TVCKEVRKK---SDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRR 120

Query: 121 QKSKDENQFLD 131
              K   Q L+
Sbjct: 121 LGPKGPEQTLE 131


>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L +D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L++D    +R + R      G+ V EA +  EA E  +K+     +V D  M  + 
Sbjct: 1   MNAILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIV-DLMMPEID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  L    +    + G   GA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GWKVCRDVRER---SDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSR 120


>gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
 gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
          Length = 229

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +R++   +    G+    A    +A +    E  P+ +++D  + G+   
Sbjct: 4   TILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRL-NESHPDLILLDWMLPGISGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + +  L    D E  + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRR 122


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +   +  GF V  A    E       E  P+ +++D  +    
Sbjct: 1   MKKILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAEN-PDLVILDLMLPKIE 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+    ++V +  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREIRK---TSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 116

Query: 119 QMQK 122
           + Q 
Sbjct: 117 RRQH 120


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  153 bits (388), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L++D    +R + R      G+ V EA +  EA E  +K+     +V D  M  + 
Sbjct: 1   MNAILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIV-DLMMPEID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  L    +    + G   GA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GWKVCRDVRER---SDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSR 120


>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
 gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
          Length = 247

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ +    + G+ V       E  + C++E   N +V+D  + G   
Sbjct: 9   KKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQREN-FNIIVLDIMLPGEDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R         +  L  + +    I G   GA+ +++KPFN   L   +  + + 
Sbjct: 68  LSICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRR 126


>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
 gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
          Length = 229

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+    ++++        G  V  A S   A +   K  LP+ +++D  + G   +
Sbjct: 4   TILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAA-QTLVKNALPDLVLLDWMLPGQSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   +R      +V +  L    D +  IAG   GA+ ++ KPF+   L+  ++ + + 
Sbjct: 63  EFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 229

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L +D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R +        GF V +A +  +A         P+ +++D  M G   L
Sbjct: 12  RILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDN-QPDLVLLDWMMPGTTGL 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +++  L     +  L  + + +  IAG  +GA+ ++ KPF+   L   +  + + 
Sbjct: 71  ELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRR 130

Query: 121 QKSKDENQ 128
              +   +
Sbjct: 131 IGREALKE 138


>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 236

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V+ A    EA +   KE+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQV-KEVEPDLILLDLMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 QKS 123
           Q +
Sbjct: 119 QSA 121


>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
 gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
          Length = 240

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R+V        G+   EA++  +A      +  P+ +++D  M     
Sbjct: 9   RSILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQK-PDLILLDWMMPQVSG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EF   +++ PL  ++ +  L  + + +  I G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 68  VEFARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLR 127

Query: 120 M 120
            
Sbjct: 128 R 128


>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
           87.22]
 gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR   R      G+    A    +A E       P+ +++D  M  +  
Sbjct: 11  QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATA-YRPDLVILDVQMPRMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 70  LTAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128


>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score =  153 bits (388), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +R+  +    D GF V  A +  +A +       P  ++ D  M G+   
Sbjct: 19  RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLL-STAQPQLIISDIMMPGMDGY 77

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F+A +R++   + + V +L  +      I G RAG +++L KPF+ E L   +  L + 
Sbjct: 78  QFLAQLRKLEPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 137

Query: 121 QKSKDENQFLD 131
            ++   ++ + 
Sbjct: 138 SRAASPSEVVA 148


>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+   +++++  +     G+ V  A    +A E   KE  P+ +++D  +  + 
Sbjct: 1   MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEK-PDLVLLDVMLPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      ++ +  L    +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARL 119

Query: 119 QMQK 122
           + ++
Sbjct: 120 REER 123


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + K+ +    + G+ V  A    EA E  + E +P  +++D  +  +   
Sbjct: 5   KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGE-VPQLVLLDLMLPVMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +++ V  +  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123

Query: 121 QK 122
            K
Sbjct: 124 TK 125


>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 243

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +    E +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIF-HEAIPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+ V  A    E  E     + P+ +++D  M  +   
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNA-VKPDMVLLDVMMPRMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G +  V  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  EVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120


>gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
 gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
          Length = 239

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 13  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 72  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 132 RISPMAVEEVIE 143


>gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
 gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
          Length = 239

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 13  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 72  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 132 RISPMAVEEVIE 143


>gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103]
 gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103]
          Length = 245

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 19  KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLI-EPWPDLILLDWMLPGGSG 77

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 78  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 137

Query: 120 M 120
            
Sbjct: 138 R 138


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    + ++        GF V +A S  EA E  + E + + +V+D  + G+   
Sbjct: 9   TVLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETV-DLVVLDLMLPGIDGW 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + + V  L  + + +  + G   GA+ +++KPF+ + L   ++ + + 
Sbjct: 68  EVCRQIRSN---SQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRR 124

Query: 121 QKSKDENQ 128
                  +
Sbjct: 125 AGETKPRR 132


>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
          Length = 236

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+V+    ++++     +  G  V  A    +A +   +  LP+ +++D  + G   
Sbjct: 3   TSILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQA-QILIRAELPDLILVDWMLPGSSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +R       + V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + +
Sbjct: 62  INLARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLR 121

Query: 120 MQKSK 124
            +  +
Sbjct: 122 RRAPQ 126


>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
          Length = 234

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D    +R++ R  F   GF V EA     A    + E  P+ L++D  M     
Sbjct: 6   QKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEK-PDILLLDIMMPVLDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+M   +D+ +  +  + D +  IAG   GA+ ++ KPFN   +   ++ + +
Sbjct: 65  IEVCKQVRKM---SDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLR 121

Query: 120 MQKSKDE 126
              ++++
Sbjct: 122 RAGTQEK 128


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score =  153 bits (387), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    +RK  +      G+ V  A +  +A +  EKE LP+ +++D  +  +
Sbjct: 1   MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKE-LPDVVLLDVMLPEM 59

Query: 60  LEFIAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             F    R     + ++ V  L    + E  + G ++GA+ +++KPF+ E L   +  + 
Sbjct: 60  NGFTVLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVL 119

Query: 119 QMQKSKDE 126
           + +   ++
Sbjct: 120 RRKGYSEK 127


>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 235

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    + ++ R+     G+ V    +  E  E C +EL P+ +++D  +  +   
Sbjct: 4   TILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKC-RELSPDLVLLDLMLPDIDGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRR 122

Query: 121 QKSK-DENQFLD 131
            K++ +EN+ + 
Sbjct: 123 SKNETEENEIIK 134


>gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
 gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
          Length = 243

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V  A    E  + C     P+ +++D  M G   
Sbjct: 5   KQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEE-MKRCLAGGYPDLILLDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +DV +  L    +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 64  FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120

Query: 120 MQKSKD 125
             K  D
Sbjct: 121 RSKVSD 126


>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 243

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G+    A    +A    E    P+ LV+D  M  +   
Sbjct: 9   RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAES-YRPDLLVLDIQMPRMDGL 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G+ V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 125


>gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea
           ananatis AJ13355]
          Length = 245

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 19  KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLI-EPWPDLILLDWMLPGGSG 77

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 78  IQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMR 137

Query: 120 M 120
            
Sbjct: 138 R 138


>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1111

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   +  +V  +  +   + + +AT+  EA    EK   P+ +++D  M  +   
Sbjct: 717 KILVVDDEPVNIQVIANNLSLQNYAITQATNGLEALTLIEKGFKPDLILLDVMMPRMTGY 776

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+  L +++ +  L  +     ++ G  +GAN +L KPF+++ L   ++   ++
Sbjct: 777 EVCQKLREKYLHSELPILMLTAKNQVTDLVDGLSSGANDYLSKPFSKQELLARIKTHLRL 836

Query: 121 QK 122
            K
Sbjct: 837 LK 838


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E       P+ +V+D  M      
Sbjct: 10  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSE-PDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 125


>gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14]
 gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14]
          Length = 243

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V  A    E  + C     P+ +++D  M G   
Sbjct: 5   KQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEE-MKRCLAGGYPDLILLDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +DV +  L    +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 64  FTLCQHIRK---TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILR 120

Query: 120 MQKSKD 125
             K  D
Sbjct: 121 RSKVSD 126


>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H  N  GF + EA +  EA +  E  +  + +++D  M  + 
Sbjct: 1   MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLET-VKVDLVIMDIMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      DV +  L  + +  + + G   GA+ +L+KPF+   L   ++ L 
Sbjct: 60  GWELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYR 120


>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
 gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
          Length = 235

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++      + V  AT   EA +    E   +++++D  +  + 
Sbjct: 1   MKKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEP-FDFIILDLMLPSLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GLDVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERR 119

Query: 121 QKSKDE 126
            +S+ +
Sbjct: 120 SQSQPQ 125


>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H  N  GF + EA +  EA +  E  +  + +++D  M  + 
Sbjct: 3   MTRILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLET-VKVDLVIMDIMMPEMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      DV +  L  + +  + + G   GA+ +L+KPF+   L   ++ L 
Sbjct: 62  GWELCRELR---DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALL 118

Query: 119 QMQK 122
           +  +
Sbjct: 119 KRYR 122


>gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
 gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
          Length = 239

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 13  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPYPDLVLLDWMLPGGSG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 72  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 132 RISPMAVEEVIE 143


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+     R+V  +     GF V  A +  EA      E  P+ +V+D  +     +
Sbjct: 7   TVLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEAL-LMMAEENPDIVVLDWMLPNVSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   +V +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 ARPSAAGLRLE 136


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +  +  G+ V +A    EA +    E + +  ++D  + G+  
Sbjct: 12  KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 70

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R M    +  V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 71  FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 130

Query: 120 M 120
            
Sbjct: 131 R 131


>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 245

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 9   QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEA-YDPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 243

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKAD-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 VE 124


>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 244

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ +V+D  M  +  
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAA-YRPDLVVLDIQMPRMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 70  LTAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128


>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   +  KV        G+ V    S  E      +E  P+ +V D  M  + 
Sbjct: 1   MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQE-QPDVVVSDVVMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ   G  V   +L    + +  + G   GA+ +++KPF    L   +    
Sbjct: 60  GFEFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQI 119

Query: 119 QM-QKSKDENQFL 130
           +  ++++ E   L
Sbjct: 120 ERSRRTQSEILRL 132


>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 252

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME---GV 59
            +L+VD    + +  R      GF V  A           + + P+ +++D  M      
Sbjct: 18  RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALR-INPDIIILDVMMPPGIDG 76

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+ P   ++ +  L    +    IAG R GA+ +L KPF+ + L   +R + +
Sbjct: 77  LEVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILR 136

Query: 120 MQ 121
            Q
Sbjct: 137 RQ 138


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSD-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +     +   EA     A      E  P+ +++D  + G   
Sbjct: 3   KRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLI-EPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 244

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +  F D GF+V  A    E  E  + E +P+ ++ D  M      
Sbjct: 19  RVLLVDDEPGLRTAVQAYFEDEGFIVSTAADGEEGWEKAQSE-VPDVVLSDVMMPRVDGF 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +      IAG RAG + ++ KPF+ + L   +R + Q 
Sbjct: 78  GLLKLLREDERLGGTPVIFLTAKGMTADRIAGFRAGVDDYIPKPFDPDELVARVRNVVQR 137

Query: 121 QK 122
           Q+
Sbjct: 138 QE 139


>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 9   QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K+  P+ +V+D  M      
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQD-PDLVVLDVMMPKLDGY 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 67  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123


>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris DP4]
 gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris RCH1]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++ R      GF V  A +  +  E  ++  +P  +++D  + G+  F
Sbjct: 5   RILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRH-VPGLVLLDLMLPGMSGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    V V  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  DVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKR 123

Query: 121 QKSKDE 126
                E
Sbjct: 124 VTGAQE 129


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF V+ A +  EA +  E+E + + +V+D  M+ +  F
Sbjct: 6   NILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPM-DLVVLDVMMDEMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  +++   + + +  L      +  + G + GA+ +++KPF+   L   +    +  +
Sbjct: 65  TAC-KEIRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQ 123

Query: 123 SKDE 126
              +
Sbjct: 124 GIQQ 127


>gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
 gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
          Length = 239

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 13  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 72  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 132 RISPMAVEEVIE 143


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  +A
Sbjct: 120 RTKLQQEEQVAEA 132


>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +R++     ++FG+   EA +  EA    E E   +++++D  M  +   
Sbjct: 5   KVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLE-EAHYDFVILDIMMPEMDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  AVCKEIRK---TSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDENQFLD 131
              + + + L+
Sbjct: 121 YTKQGQQEELE 131


>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 223

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V  A +  +      K  +P+ +++D  +    
Sbjct: 1   MK-ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVF-KNEMPDLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYDVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  LLLVD    +  +        G+   + T   EA  + ++E   + +++D  M    
Sbjct: 1   MKKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETY-DLILLDIMMPETD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+M   + V V  L    D   ++ G + GA+ ++ KPF+ + L   +  + 
Sbjct: 60  GWEVCRQIRKM---SQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVL 116

Query: 119 QMQKSKDENQFLD 131
           +   ++++N+ ++
Sbjct: 117 RRS-NQNQNETIE 128


>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 232

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +      L N  G+ V  A    EA     K   P+ +++D  +    
Sbjct: 1   MKKILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKF-KLFNPDLVLLDIMLPEKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   ++V +  L  + +    + G + GA+ ++ KPF  + L   +  + 
Sbjct: 60  GWEVCKEIRKI---SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVL 116

Query: 119 QMQKS 123
           +  +S
Sbjct: 117 RRYQS 121


>gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 276

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V +V        G  V  A     A         P+ +V+D  + G+    
Sbjct: 19  VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R       V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 78  VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF VF A    EA E   KE+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAF-KEVQPDLILLDLMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   +D  +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLDVA-REIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRR 118


>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
 gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+    ++++        G  V  A +   A     +  LP+ +++D  + G   +
Sbjct: 4   NILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLV-RNALPDLVLLDWMLPGASGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R       + +  L    D +  +AG   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DVAKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
           elongata DSM 2581]
 gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Halomonas elongata DSM 2581]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++         + V EA +   A         P+ +++D  M G   
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDH-QPDLVLLDWMMPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     ++ +  L  + + +  I G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R   + L +   + V        A +   +  +P+ ++ D  M G+  F
Sbjct: 644 RILLADDNSDMRDYVKRLLSQQ-YEVESVADGLAALDSA-RGRVPDLVLTDVMMPGLDGF 701

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P    V +  L      E  + G  AGA+ +L+KPF+   L   +    +M
Sbjct: 702 GLLQELRANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAALKM 761

Query: 121 QKSKDE 126
              ++E
Sbjct: 762 AHLREE 767



 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 5/121 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD     R+    +    G  V    S  EA +    E  P+ L+ D  M       
Sbjct: 1295 ILVVDDDDDTREFHTFVLEQAGAKVMAVASAKEALQAL-AESEPDILLSDIGMPETDGYM 1353

Query: 62   FIAHVRQMP--LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +  +R +       +    L              +G    L KP   + L  A+  L  
Sbjct: 1354 LMRQIRALQLKQAKQIPAIALTAYAGEINQQQAIASGFQRHLSKPVEPDELVKAIATLIG 1413

Query: 120  M 120
             
Sbjct: 1414 R 1414


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E       P+ +V+D  M      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAE-PDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126

Query: 121 QK 122
            +
Sbjct: 127 VE 128


>gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++ R+     G+ V  + +  E  +    E  P+ +++D  +     L
Sbjct: 4   TVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAL-EGKPDLVILDLMLPDVDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++     ++ +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122

Query: 121 QKSKDENQ 128
            +  DE +
Sbjct: 123 TQQPDEEK 130


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAD-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +H +R+  R       + V EA    E  E      LP+ ++ D  M     L
Sbjct: 1089 TVLVVEDNHELRQFIRTEL-AVTYQVIEAADGVEGIEKA-SNQLPDLIISDLMMPKADGL 1146

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  +R  P    + +  L  +  FE  I G   G + +L KPF+   L   ++   + 
Sbjct: 1147 ELLRTLRNNPQTCHIPIIILSAKASFESKITGLETGGDDYLTKPFSPRELVLRIKNTLER 1206

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1207 REKLKE 1212


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    + ++ R      GF V    +  +A E    E  PN +++D  + G   
Sbjct: 5   TKVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNE-APNIVILDIMLPGADG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++   +++ V  L  + +    + G   GA+ +L+KPF  + L   ++ + +
Sbjct: 64  WQVCREIRKI---SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLR 120

Query: 120 MQKSKDEN 127
             + KD +
Sbjct: 121 RYEHKDSD 128


>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 236

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFE-EGKPDLVILDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 290

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V +V        G  V  A     A         P+ +V+D  + G+    
Sbjct: 19  VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R       V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 78  VCRRMRARHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135


>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
 gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
 gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
 gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas aeruginosa PA7]
 gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
 gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
          Length = 239

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P+ +++D  + G   
Sbjct: 13  RRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRL-SEPFPDLVLLDWMLPGGSG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 72  IQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 131

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 132 RISPMAVEEVIE 143


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+V         F V EA    +A E        + +++D  + G+ 
Sbjct: 1   MARVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQA---PGADLVILDLMLPGMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    + E+ + G   GA+ ++ KPF+   +   +R L + 
Sbjct: 58  GWRVAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRR 117

Query: 121 QKSKDEN 127
              KDE 
Sbjct: 118 VGLKDEL 124


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R           + V       +A E   K    + +++D  +  V  
Sbjct: 9   RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHH-FDLVILDLMLPRVPG 67

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 68  ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124

Query: 120 MQKSKDENQF 129
              +  E Q 
Sbjct: 125 RVHADSEPQR 134


>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
 gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +      L N  G+ V  A    EA     K   P+ +++D  +    
Sbjct: 1   MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKF-KLFNPDLVLLDIMLPEKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   ++V +  L  + +    + G + GA+ ++ KPF  + L   +  + 
Sbjct: 60  GWEVCKEIRKI---SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVL 116

Query: 119 QMQKS 123
           +  +S
Sbjct: 117 RRYQS 121


>gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 219

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 4/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D   I++K+  +L    G++V    S  +  +    E  P+ +V D  M  + 
Sbjct: 1   MKRILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWL-EFQPDLIVSDVRMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    ++R  P G  +   +L  + D E  + G  +GA+ ++ KPF  + L   +    
Sbjct: 60  GFEFCRYIRSQPTGQLIPFLFLSSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQL 119

Query: 119 QMQKS-KDENQFLDA 132
              ++ + E Q L A
Sbjct: 120 ARIENIRAEMQRLAA 134


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +R++    F   GF V EA    EA    E ++ P+ +++D  M     
Sbjct: 4   KTVLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVE-QVKPDIVILDIMMPVLDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    + V +  L      +  I G   GA+ ++ KPFN + +   ++ + +
Sbjct: 63  FEVCQQIRK---YSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILR 119

Query: 120 MQKSKDE 126
              +  +
Sbjct: 120 RTAAPQQ 126


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ R      GF   EA +   A E   +    + +++D  + G+   
Sbjct: 2   RILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKV-RNGTFDLIILDLMIPGLDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    T + +  L  + +    I G   GA+ +++KPF+   L   ++ + + 
Sbjct: 61  TVCKVLRKE---TQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRR 117

Query: 121 QKSKDENQFL 130
              +   + L
Sbjct: 118 LDGETSKEHL 127


>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 243

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA      E  P+ +V+D  M      
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATF-HESDPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
 gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
          Length = 236

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+    ++++        G  V  A     A +   +E LP+ +++D  + G   +
Sbjct: 4   NILLVEDEPAIQELIAANLARAGHHVVRANDAESA-QRIVREALPDLVLLDWMLPGASGV 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   +R      D+ +  L    + +  +     GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    + ++ R      GF V    +  +A E    E  PN +++D  + G   
Sbjct: 7   TKVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNE-APNIVILDIMLPGADG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++   +++ V  L  + +    + G   GA+ +L+KPF  + L   ++ + +
Sbjct: 66  WQVCREIRKI---SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLR 122

Query: 120 MQKSKDEN 127
             + KD +
Sbjct: 123 RYEHKDSD 130


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRK-TEPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 243

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA +      +P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTF-HHAIPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
 gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
          Length = 235

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  AT   EA E    +   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQS-FDFILLDVMLPHMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      ++ +  L  + D    I G   GA+ +L KPF+   +   ++ + + 
Sbjct: 60  GIEITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARR 119


>gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica]
          Length = 229

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A   C  E  P+ +++D  + G   
Sbjct: 3   RRILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSAL-ACLSEPYPDLVLLDWMIPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQIIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
          Length = 249

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E   +   P+ +V+D  M      
Sbjct: 11  TILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAF-RNTNPDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 126


>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  AT   E  E   ++   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQS-FDFIILDVMLPTMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  L  + D    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GMEITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QKSKDENQ 128
            + + +++
Sbjct: 120 IEPRKQSK 127


>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
 gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
 gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  A    E  E   ++   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQS-FDFIILDVMLPTMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  L  + D    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GMEITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QKSKDENQ 128
            + + +++
Sbjct: 120 IEPRKQSK 127


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     ++  P+ +V+D  +  +   
Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLA-RDFRPDAVVLDIMLPDMDGL 218

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L      E  +AG  AG + ++ KPF+ E L   +R L +   
Sbjct: 219 EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 278

Query: 123 SKDE 126
              E
Sbjct: 279 RTTE 282


>gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 274

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    V +V        GF V +A     A         P+ +V+D  + G+  
Sbjct: 8   TRVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARW-PDLVVLDLMLPGMDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V V  L    D E  I G   GA+ ++ KPF+   L   +  + +
Sbjct: 67  LEVCRALRGRGP---VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLR 123

Query: 120 MQK 122
             +
Sbjct: 124 RGR 126


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A    +A         P+ LV+D  M G+  F
Sbjct: 13  RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMA-ASFRPDLLVLDVMMPGLDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V +L      E  ++G   G + ++ KPF+ + +   +R + + 
Sbjct: 72  GVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRR 129


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+ V  A    E  E     + P+ +++D  M  +   
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNA-VKPDMVLLDVMMPRMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G +  V  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  EVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120


>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 248

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+++    +R+V +      G+ V+ A +  E  +       P+ +++D  M   
Sbjct: 9   MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTH-QPDLILLDLMMSKK 67

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +RQ    ++V +  L  + +    I G   GA+ ++ KPF+   L   ++ +
Sbjct: 68  DGWELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQII 124

Query: 118 PQMQKS--KDENQFLDAI 133
            +        E +FL  +
Sbjct: 125 LKRGNQIPIQEEEFLSEV 142


>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 236

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA     +E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAV-LAFEEEKPDLVILDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    +R+V     +  G+ V+ A    EA +    +  P+ +++D  M       
Sbjct: 8   ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQ-RPDLIILDVMMPKLDGYG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+    + V +  L    D    I G   GA+ +++KPF+ + L   +R + +  
Sbjct: 67  VCQAVRK---ASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRM 123

Query: 122 KSKD 125
           ++  
Sbjct: 124 ETTK 127


>gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 305

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 65  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 123

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 124 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 183

Query: 120 MQKS 123
            +++
Sbjct: 184 RRRA 187


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score =  152 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R          G+ V        A E  EK    + +++D  +  +  
Sbjct: 6   KRILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHS-FDLIILDLMLPKLSG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R +   ++V +  L  + + E  I G   GA+ +L+KPF+   L   +R L +  
Sbjct: 65  -ERVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRA 123

Query: 122 KSKDE 126
            ++ E
Sbjct: 124 HTESE 128


>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA     ++  P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTF-RDTEPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
           [Thiomonas sp. 3As]
          Length = 244

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    + ++        G     A S  EA     +++LP+ L+ID  + G+   
Sbjct: 6   NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEAL-RVIRDVLPDVLLIDWMLPGMSGV 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L    +    + G  AGA+ ++ KPF+ + L   +R + + 
Sbjct: 65  ALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+    +  + R+     GF V EA    EA      E +P+ +++D  +  +  +E
Sbjct: 9   VLVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRI-NEAMPDLVLLDWMLPTMSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+ P    + V  L    + +  + G   GA+ ++ KPF+ E L   +R L + 
Sbjct: 68  VCRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRR 126


>gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   I R+V  +  + + + + EA++  EA    E   +P+ +++D  M  +   
Sbjct: 712 KVLIVDDEPINRQVLINNLSLYNYAITEASNGQEALTAMENGFIPDLILLDLMMPQMTGY 771

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R      ++ +  L  +     ++ G  +GAN +L KP  ++ +   ++    +
Sbjct: 772 EVCQKIRARFPTYELPIVMLTAKNQVADIVEGFESGANDYLSKPIQKQEMLARIKTHISL 831

Query: 121 QKS 123
            K 
Sbjct: 832 AKL 834


>gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 233

 Score =  152 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +  + R      GF    + +   A E  +++  P+ +++D  + G+   
Sbjct: 2   NILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQ-RPDVIILDLMLPGLDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +RQ P   D ++  L  + +    I G   GA+ +++KPF+   L   +R L + 
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R++        GF V  A +  EA +    E  P+ +V+D  +  +  F 
Sbjct: 17  LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAE-RPDLVVLDVMLPDLDGFT 75

Query: 64  --AHVRQMPLGT----DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               +R           V V +L  +      + G   GA+ ++ KPF+ E L   +R +
Sbjct: 76  VVRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAI 135

Query: 118 PQMQKSKDENQFL 130
            +      ++  L
Sbjct: 136 LRRAGGPADDGRL 148


>gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + ++ R+     G+ V  + +  E  +    E  P+ +++D  +  V   
Sbjct: 4   TVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAL-EGKPDLVILDLMLPDVDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     ++ +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 123 TQQPEEEK 130


>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
 gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 120

Query: 121 QKSKDEN 127
              +++ 
Sbjct: 121 YTKQEQQ 127


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++ R      G+ V  A     A E   +E  P+ +V+D  + G   L
Sbjct: 5   KILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREK-PDLIVLDIMLPGVDGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++      + +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  EVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRR 123

Query: 121 --QKSKDENQFLDAI 133
             +  + +NQ  + I
Sbjct: 124 NFKAQQSDNQEKENI 138


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R +        G+    A++  EA E  ++E   + +++D  M  + 
Sbjct: 5   MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEET-FHLVLLDVMMPELD 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R     ++V +  L    +    I G + GA+ ++ KPF+   L   +    + 
Sbjct: 64  GLTACMRIRE-FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRR 122

Query: 121 QKSKDENQ 128
             S  + Q
Sbjct: 123 THSFSKEQ 130


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A+   EA E   K+  P+ +V+D  M      
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQD-PDLVVLDVMMPKLDGY 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 67  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+V+    +           G+    A S     E    E  P+ +++D  +     
Sbjct: 3   TTILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDISG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R       V V  L    +    + G   GA+ ++ KPF+   L   +R + +
Sbjct: 63  TEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILR 122

Query: 120 MQKSKDE 126
              +K E
Sbjct: 123 RAGTKAE 129


>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium DO]
 gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  AT   E  E   ++   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQS-FDFIILDVMLPTMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  L  + D    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GMEITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QKSKDENQ 128
            + + +++
Sbjct: 120 IEPRKQSK 127


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGV 59
           M ++L+VD    +R +  + F+  GF V        A E  ++     + +V+D  + G+
Sbjct: 1   MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G  + +  L    +   ++ G   GA+ ++ KPF+   L    R + +
Sbjct: 61  DGLEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLR 120

Query: 120 MQKSKDEN 127
             +S++E+
Sbjct: 121 RTESREED 128


>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V  A +  +      K  +PN +++D  +    
Sbjct: 1   MK-ILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMF-KNEMPNLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
 gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA            E  P+ +++D  + G   
Sbjct: 3   RRILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKI-AEPYPDMVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      ++ +  L    + E  + G   GA+ ++ KPF+ + L   MR + +
Sbjct: 62  IQLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFR 121

Query: 120 MQKSKDENQFLD 131
                  ++ L+
Sbjct: 122 RVAPTVLDEPLE 133


>gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 233

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +  + R      GF    + +   A E  +++  P+ +++D  + G+   
Sbjct: 2   NILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQ-RPDVIILDLMLPGLDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +RQ P   D ++  L  + +    I G   GA+ +++KPF+   L   +R L + 
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120


>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++         +    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  +V +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RAREDDED 129


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  +A
Sbjct: 120 RTKLQQEEQVSEA 132


>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
 gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+     R+V  +     GF V  A++  EA      E+ P+ +V+D  M     +
Sbjct: 7   TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEAL-LMVSEMPPDIIVLDWMMPNVSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125

Query: 121 QKSKDENQFLD 131
            +     + L+
Sbjct: 126 TRPATVGERLE 136


>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 218

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ +   
Sbjct: 118 KQEQQEEFQ 126


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 18  MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 77  GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135

Query: 121 QK 122
            +
Sbjct: 136 SQ 137


>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 242

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF V  A    E  +   ++++P+ ++ D  M      
Sbjct: 16  RILLVDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKA-QQIVPDVVISDVMMPRCDGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G +AG + ++ KPF+ + L   +R + + 
Sbjct: 75  GLLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELIARVRNVVKR 134

Query: 121 QK 122
           Q+
Sbjct: 135 QE 136


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  A+   +A E    +   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKP-FDFIILDVMLPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +  +  L  + D    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GIEITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QKSKDENQ 128
            + + + +
Sbjct: 120 LEPRQQTR 127


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R++ R+     GF V +A +  EA     KE  P+ +++D  + G   +
Sbjct: 6   TILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQI-KEAPPDLILLDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + V  L    D    + G   GA+ ++ KP++   L   ++   + 
Sbjct: 65  EICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRR 124

Query: 121 QKSKDENQFLD 131
            +     + L+
Sbjct: 125 TRPAAVGERLE 135


>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
          Length = 242

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 17  RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 75

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 76  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 135

Query: 120 M 120
            
Sbjct: 136 R 136


>gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
 gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A  F   +  P+ +++D  + G   
Sbjct: 3   RRILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLI-DPYPDLVLLDWMIPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     D+ +  L  + + E  + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 62  LQIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
 gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+     R+V  +     GF V  A++  EA      E+ P+ +V+D  M     +
Sbjct: 7   TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEAL-LMVAEMPPDIIVLDWMMPNVSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125

Query: 121 QKSKDENQFLD 131
            +     + L+
Sbjct: 126 TRPATVGERLE 136


>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 256

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+V+    +R+V +       + V+ A +  E  +       P+ +++D  M   
Sbjct: 20  MKRRVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTH-QPDLIILDLMMPKK 78

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +RQ    ++V +  L  + +    I G   GA+ ++ KPF+   L   ++ +
Sbjct: 79  DGWELCEEIRQQ---SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQII 135

Query: 118 PQM 120
            + 
Sbjct: 136 LRR 138


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E E +P+ +++D  +     
Sbjct: 3   KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-ETMPDLILLDIMLPLKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKSKDEN 127
                   
Sbjct: 119 RHAQTATQ 126


>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRLLLRETVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128

Query: 123 SKD 125
           +++
Sbjct: 129 AQE 131


>gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda FL6-60]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R +   +    G+   EA S   A      E  P+ +++D  + G    
Sbjct: 4   RILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLC-EPYPDLILLDWMLPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +++ P   ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 121 QKSKDENQFLD 131
                  + ++
Sbjct: 123 ISPMALEETIN 133


>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 244

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    + ++        G     A S  EA     +++LP+ L+ID  + G+   
Sbjct: 6   NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEAL-RVIRDVLPDVLLIDWMLPGMSGV 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L    +    + G  AGA+ ++ KPF+ + L   +R + + 
Sbjct: 65  ALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+ V  A    E  E    ++ P+ +++D  M  +   
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKF-NQVKPDMVLLDVMMPKMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G +  V  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  EVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120


>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R+         GF V EA S  EA    + E   + +++D  + G+ 
Sbjct: 1   MKRVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +     + + V  L  +      + G   GA+ +++KPF+   L   +  + + 
Sbjct: 61  GYKVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRR 120

Query: 121 QKS 123
             +
Sbjct: 121 INN 123


>gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 855

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   +   V  +  +   +   +A S  EA    E+ L+P+ +++D  M  +   
Sbjct: 562 KILIVDDEAVNLHVLANHLSLNHYATIQAASGREALSILEEGLIPDLILLDVMMPHMTGY 621

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ +  L  +     ++ G   GAN +L+KP ++  L   ++    +
Sbjct: 622 EVTQKIREHWEANELPIVLLTAKNQVSDLVMGLEVGANDYLIKPISKNELLARIKTHLHI 681

Query: 121 QKSKDENQFLD 131
           ++ + E   L 
Sbjct: 682 KQLRAETLRLA 692


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAE-PDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQFLDA 132
            +  +    +++
Sbjct: 119 SELAETQTNIES 130


>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 248

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    +R + R      GF V EAT+  EA E        + +++D  +  +    
Sbjct: 16  VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMA-ANHHFDIILLDLMLPDMDGWQ 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V +  L    + +  + G   GA+ +L KPF  E L   +  L +  
Sbjct: 75  VCKKIREKD---HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRS 131

Query: 122 KSKDENQFLDA 132
                 +  +A
Sbjct: 132 AITQSIRRQEA 142


>gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
 gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           brasiliensis LMG 20546]
          Length = 1128

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+VD   +  +V        G+ V  A    EA E  EKE  P  L++D  M G+    
Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALEAVEKEK-PELLLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + V  L      +  I G  AGAN +L KPFN++ L   +  +  + 
Sbjct: 783 VCETLRKSYDHAALPVIMLTALNQTDDRIRGFNAGANDYLSKPFNKQELAARI--IAHLT 840

Query: 122 KSKDENQFLD 131
            SK E + L+
Sbjct: 841 ASKAEQRRLE 850


>gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
          Length = 229

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRL-AEPYPELVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  LQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RISPMAVEEVIE 133


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+   I++++  +     G+ V  A     A +  +KE  P+ +++D  +    
Sbjct: 5   MVKILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEK-PDLVLLDVMLPELD 63

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R       + +  L    +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 64  GLEVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARL 123

Query: 119 QMQK 122
           + +K
Sbjct: 124 REEK 127


>gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 228

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     + V        G+ V  A+S  EA    E    P+ ++ D  M  + 
Sbjct: 1   MQKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNP-PDLVISDVMMPHMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R   LG  V   +L  + + E  + G   G + +L+KPF  + +   ++   
Sbjct: 60  GFEFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVKGQL 119

Query: 119 QM-QKSKDENQFL 130
           +   +   E   L
Sbjct: 120 ERSHRIHAEIVRL 132


>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 234

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    + ++ R+     G+ V  + +  E  +   +E  P+ +++D  +     L
Sbjct: 4   RVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEK-PDLVILDLMLPDVDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++     ++ +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 123 TQQPEEEK 130


>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 246

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 9   QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +  +  G+ V +A    EA +    E + +  ++D  + G+  
Sbjct: 4   KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R +    +  V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFR 122

Query: 120 MQKSKDENQ 128
              +  +++
Sbjct: 123 RLSAATQSK 131


>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R   +      G+ V  A    E  +    E  P+ +++D  M  + 
Sbjct: 1   MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEK-PDLVLLDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F        L   V +  L  +   E  + G  AGA+ +L+KPF+ + L   +R + + 
Sbjct: 60  GFALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR 119

Query: 121 QKSKDE 126
            + +  
Sbjct: 120 HQREKR 125


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E       P+ +V+D  M      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAE-PDLVVLDVMMPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126

Query: 121 QK 122
            +
Sbjct: 127 VE 128


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD    + ++ R      G+ V       +A E   + LLP+ +++D  + G+  L
Sbjct: 2   TILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKA-RNLLPDAIILDLMLPGMSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    + + +  L  + +   ++ G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120


>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
 gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
          Length = 235

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ +    +           G+ V  A+   EA +   K    + +++D  M G  
Sbjct: 2   MAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLF-KNNPFDLVLLDIMMPGKS 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R      D+ +  L  + +    + G + GA+ ++ KPF    L   +  + 
Sbjct: 61  GYDVCREIRSTDE--DIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVL 118

Query: 119 QMQKSKDEN 127
           +  +   E 
Sbjct: 119 RRARRNHEE 127


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M +   +L+VD    +R++         + V  A +  EA +      + + +++D  M 
Sbjct: 1   MKNAFCVLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEV-DLIILDVMMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F A  +       + +  L  + D    + G + GA+ +++KPF+ + L   +  L
Sbjct: 60  DMDGFTACKKIREKYM-MPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEAL 118

Query: 118 PQMQKS 123
            +    
Sbjct: 119 LRRSNQ 124


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +  + ++     G+ V  A    EA     +E LP+ +V+D  +     +
Sbjct: 5   RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQV-QERLPDLIVLDWMLPKVSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P   +V +  L    +    I G   GA+ +++KPF    L   +R + + 
Sbjct: 64  EVCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRR 123

Query: 121 QK 122
            +
Sbjct: 124 LR 125


>gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis HI4320]
          Length = 229

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A  F   +  P+ +++D  + G   
Sbjct: 3   RRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLI-DPYPDLVLLDWMIPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     D+ +  L  + + E  + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 62  IQVIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 236

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFE-EDKPDLVILDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  ++
Sbjct: 120 RTKLQQEEQVTES 132


>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+   EA    EA      +  P+ +++D  +  +  
Sbjct: 3   KKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQS-PDLILLDIMLPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    R++       +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 62  FTVC-RKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119


>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 237

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G+    A    +A    E    P+ +V+D  M  +   
Sbjct: 6   RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEV-YAPDLIVLDIQMPRMDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G+ V +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 65  TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 122


>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 248

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++  +     GF V  A +  +A +    E  P+ +++D  +  + 
Sbjct: 1   MK-ILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEH-PDLIILDLMLPDMS 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +     + +   +++G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 59  GFDICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNIL 118

Query: 119 QMQKSKD 125
           +  +   
Sbjct: 119 RRAQEAK 125


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V R+     GF V  A +  EA    ++E  P+ +V+D  +     +
Sbjct: 7   TVLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEE-PDVIVLDWMLPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    V V  L    +    + G   GA+ +++KP++   L   ++   + 
Sbjct: 66  EVCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 ARPAAAGLRLE 136


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R          G++V        A E  EK    + +V+D  +  +  
Sbjct: 6   KRILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHS-FDLIVLDLMLPKLSG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R +   + V +  L  + + E  I G   GA+ +++KPF+   L   +R L +  
Sbjct: 65  -ERVCRAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRA 123

Query: 122 KSKDENQF 129
            ++ E Q 
Sbjct: 124 HAEAEPQL 131


>gi|22297889|ref|NP_681136.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294067|dbj|BAC07898.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 121

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ S   R++   L    GF V  AT   EA E  ++   P+ +V+D  M  + 
Sbjct: 1   MTKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQST-PDVVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    + V     + +      G + GA++++ KPF+ + L   +++L 
Sbjct: 60  GYEVCRQIKSDPRTQSIPVVMCSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +L+VD   I ++V +   +   + +  A +  +A +        + +++D  M  +   E
Sbjct: 1193 ILVVDDEPINQQVLKSHLSALKYDITSALNGEDALKALSNGKHFDLVLLDVMMPRMSGYE 1252

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R+  L +++ V  +  +   + ++ G   GAN ++ KPF ++     ++    + 
Sbjct: 1253 VCEQIRKKFLPSELPVIMITAKNQVQDLVHGLNTGANDYITKPFTKDEFLARVKTHLNLH 1312

Query: 122  KSKD 125
            +   
Sbjct: 1313 QIHA 1316


>gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A+   +A      +   + L++D  M    
Sbjct: 18  MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL--DNSIDLLLLDVMMPKKN 75

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 76  GIDTLKELRQQ---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 132

Query: 119 QMQKSKDENQF 129
           +     ++ Q 
Sbjct: 133 RRSNWSEQQQQ 143


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  +A
Sbjct: 120 RTKLQQEEQVKEA 132


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A+   EA E C +E  P+ +V+D  M      
Sbjct: 15  TILVVDDEASIRRILETRLSMIGYQVVTASDGMEALE-CFRESHPDLVVLDVMMPKLDGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 74  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130

Query: 121 QKSKD 125
            + + 
Sbjct: 131 VEKEQ 135


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  ++
Sbjct: 120 RTKLQQEEQVSES 132


>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
           transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
 gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
           transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++         +    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  +V +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RAREDDED 129


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA    +KE  PN +V+D  +      
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKEN-PNLIVLDIMIPKLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 70  GVCQEIRKE---SDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRR 126

Query: 121 QK 122
            +
Sbjct: 127 VE 128


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score =  151 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ ++     G+ VF A    EA E  E E+ P+ +++D  +  +  
Sbjct: 51  KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMDG 109

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 110 LEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 167


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A     A     +++ P+ +V+D  +  +  F
Sbjct: 11  RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLA-RDVEPDLVVLDVMLPDMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L    D    + G   G + ++ KPF+ E +   +R + +   
Sbjct: 70  TVTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTS 129

Query: 123 S 123
           +
Sbjct: 130 A 130


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A    EA E   +   P+ +V+D  M      
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETF-RLTEPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +  +  G+ V +A    EA +    E + +  ++D  + G+  
Sbjct: 4   KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R M    +  V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
           albilineans GPE PC73]
 gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
           albilineans]
          Length = 229

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREA-QSLIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE     R+  +  +V +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|153875667|ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152067869|gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 365

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD      K+  ++     F V  A    +A E       P+ +++D  M G+  F 
Sbjct: 9   LLIVDDIPTNLKLLMNVLRHLDFTVQVAQDGEDALEQVAYAK-PDLILLDVMMPGMDGFE 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V ++    +    + G   GA  ++ KP   E +   +    +++
Sbjct: 68  TCRRLKADEKTHDIPVIFMTALTETVDKVKGFEIGAVDYITKPVQPEEVLARVNTHLKLR 127

Query: 122 KSKDENQF 129
           K +   + 
Sbjct: 128 KQQKRLEQ 135


>gi|119484444|ref|ZP_01619061.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457918|gb|EAW39041.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 437

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S +  KV      + G+ V  A +   A +    +  P+ +++D  M G+  F 
Sbjct: 11  ILIVDDSPVHLKVLSESLVNAGYEVAVAINGETALKQALYDP-PDLILLDIQMPGMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               ++  P    V + ++    D    I G +AGA  +L KPF +E +   ++   Q+ 
Sbjct: 70  TCHQLKAHPSTQAVPIIFMTALADTSSKIKGLKAGAVDYLTKPFQQEEVLARIKVHLQIK 129

Query: 121 ---QKSKDENQFLDAI 133
              Q   ++N  LD +
Sbjct: 130 DLTQSLLEKNLLLDQL 145


>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 218

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQFLDA 132
            +  +    +++
Sbjct: 119 SELAETQTNIES 130


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + R    D G+ V  A S        E+E   + LV+D  + GV  
Sbjct: 4   KRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   V +  +       + I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRA 123

Query: 122 KSKDENQFLDA 132
           ++  ++  +DA
Sbjct: 124 EAMAQSARIDA 134


>gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
 gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
          Length = 228

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A +    E  P+ +++D  + G   
Sbjct: 3   RRILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKI-AEPYPDMVLLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      ++ +  L    + E  + G   GA+ ++ KPF+ + L   MR + +
Sbjct: 62  LQLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFR 121

Query: 120 MQKSKDENQFLD 131
                  ++ L+
Sbjct: 122 RVAPTVLDEPLE 133


>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 226

 Score =  151 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LLLVD    VR+       D GF V    +   A E+ E   +P+ ++ D  M  +   
Sbjct: 4   KLLLVDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETH-VPDVIITDIMMPQMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F+  VRQ P  + + V +L         I G  AG +++L KPF+ + L   ++ L + 
Sbjct: 63  AFLETVRQQPHLSHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLLRR 122

Query: 121 QKSKD 125
           Q +  
Sbjct: 123 QAAAR 127


>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 275

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VLE 61
            +L+VD    V +V        G+ V  A     A E     L P+ +V+D  + G +  
Sbjct: 44  RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAA-LRPDLVVLDLMLPGGMDG 102

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R    G  V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  
Sbjct: 103 FEVCRRIRARGP-VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRW 161

Query: 122 KSKD 125
           +  +
Sbjct: 162 RRTE 165


>gi|291287962|ref|YP_003504778.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885122|gb|ADD68822.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 537

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD S    +V   L     F +  A     A +       P+ +++D  M G+   
Sbjct: 8   SILIVDDSPENIRVLADLLGS-DFDIKIAKDGATALKILASPPYPDLILLDIMMPGMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     ++ V ++  +   E ++ G   G   ++ KPFN + L   ++   ++
Sbjct: 67  EVCREIKKSFNTRNIPVIFITAKSLTEDIVLGFELGGVDYITKPFNEKELMARIQTHLEL 126

Query: 121 QKSKDENQFL 130
           +   +E + L
Sbjct: 127 KSINEELETL 136


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    + +  R      GF V  A    EA E    E +P+ +++D  +  +  
Sbjct: 8   RSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTE-MPDLVLLDVMLPDLDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++ +   ++  V  L  + + +  + G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 67  F-EVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRV 125

Query: 122 KS 123
           ++
Sbjct: 126 EA 127


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD    + ++ R      G+ V       +A E   + LLP+ +++D  + G+  L
Sbjct: 2   TILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKA-RNLLPDAIILDLMLPGMSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    + + +  L  + +   ++ G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 121 QK 122
            +
Sbjct: 121 TR 122


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  +A
Sbjct: 120 RTKLQQEEQVAEA 132


>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
 gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++     +  G  V  A    +A+     E LP+ +++D  + G+   
Sbjct: 4   TILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE-LPDLILLDWMLPGMSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      +V V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  SLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  +D
Sbjct: 123 RAPQLTDDIID 133


>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++LLV+    ++++        G  V  A++   A     K  LP+ +++D  + G   +
Sbjct: 4   NILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAAL-MLVKNALPDLVLLDWMLPGGSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R       V +  L    D +  I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DIAKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  +A
Sbjct: 120 RTKLQQEEQVAEA 132


>gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +      L    G+ + +A S+ +AR   +    P+ +++D  +    
Sbjct: 1   MSRILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGD 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ   G  + +  L    + +  + G   GA+ +L KPF    L   +R + 
Sbjct: 61  GFELCRQIRQ--GGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAIL 118

Query: 119 QMQKSKDE 126
           ++ + + E
Sbjct: 119 RLAQHQRE 126


>gi|310825369|ref|YP_003957727.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398441|gb|ADO75900.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1002

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL D +  +R   R L     F V       EA    E   LP+ ++ D  M G+  F 
Sbjct: 634 ILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEA-RLPDLVLSDVMMPGMDGFA 691

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +   R  P    V    L      E  + G +AGA+ +L+KPF+   L   +  + ++ 
Sbjct: 692 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 751

Query: 122 KSKDENQFLD 131
           + + + + L 
Sbjct: 752 RERAKRERLA 761


>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALII-DRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D  +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R + R      GF V EA    EA E    E  P+ +++D  + G+   
Sbjct: 2   RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTE-RPDLVLLDIMLPGIDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV V  L    D    ++G  AGA+ +L+KPF  E L   +R + + 
Sbjct: 61  AVCRILRRE---SDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117


>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 237

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +++++    +R++ +      G+ V+ A +  E      ++  P+ +++D  M     
Sbjct: 3   KRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVF-QQYQPDLIILDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L    +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQ---YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
 gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R + R       +   EA +  +A      E  P+ +++D  M G   
Sbjct: 4   RKILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEK-PDLILLDWMMPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  +  ++ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E   +E   + +V+D  M      
Sbjct: 13  TILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPT-DLVVLDVMMPKLDGY 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 72  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 128

Query: 121 QKSK 124
            + +
Sbjct: 129 VEKE 132


>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1135

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD   +  +V  +  +   + + +A +  +A     +   P+ +++D  M  
Sbjct: 726 MKAFKILIVDDEPVNLQVLVNHLSLHNYKITQAVNGLDAFTKIRQGYRPDLILLDIMMPK 785

Query: 59  V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +   EF   +R   L  ++ V  L  +     ++AG  AGAN +L KP ++  L   ++ 
Sbjct: 786 MTGYEFCKKIRNKYLPNELPVVLLTAKNQISDLVAGFAAGANDYLTKPISKNELLARIKT 845

Query: 117 LPQMQK 122
             Q+ K
Sbjct: 846 HLQLAK 851


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    + +V +      GF V    +  +      K  +P+ +++D  +    
Sbjct: 1   MK-ILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVF-KNEMPDLVILDIMLPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++   +++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GYEVCRELRKI---SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVL 115

Query: 119 QMQKSK 124
           +  + +
Sbjct: 116 RRTQGE 121


>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + ++ R      G+ V  A       E   +E  P+ +++D  +    
Sbjct: 1   MMKILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREK-PDLVILDLMLPMLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      +  +  L      E  IAG  +GA+ +L+KPF+   +   ++ + 
Sbjct: 60  GMEVCRRIR---TWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAIL 116

Query: 119 QMQKS 123
           +    
Sbjct: 117 RRAGL 121


>gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
 gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA S   A      E  P+ +++D  + G   
Sbjct: 11  RRILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLC-EPYPDLILLDWMLPGGSG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++ P   D+ V  L    + E  + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 70  IQLIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVMR 129

Query: 120 M 120
            
Sbjct: 130 R 130


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +  +  G+ V +A    EA +    E + +  ++D  + G+  
Sbjct: 4   KKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDV-DMFIVDIMLPGIDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R +    +  V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
 gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMV-EPYPDMVLLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQIAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RVSPTSLEEAIE 133


>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V EA S  +  +   +E  P+ +++D  M  +  
Sbjct: 7   RRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMV-REQHPDLMILDVMMPEMDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + + V  L      + ++ G  +GA+ +L KPFN + L   +R L +
Sbjct: 66  WEVCRRLRE---FSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59
           M  +L+V+   ++R          G+ V +  +  EA +  E+     +  V+D  M G+
Sbjct: 1   MKRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    R     + + +  L  +      + G   GA+ ++ KPF+   L   +  L +
Sbjct: 61  DGFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHR 120

Query: 120 MQKSKDE 126
                 E
Sbjct: 121 RVTVAAE 127


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     G+ V EA    EA      E  P+ +V+D  +     +E
Sbjct: 7   ILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLV-SERKPDLMVLDWMLPSLSGIE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+ P   ++ +  L    +    I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 66  VCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRV 125

Query: 122 KSKDENQFLD 131
           +   +   L+
Sbjct: 126 QPVPQKGMLE 135


>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 235

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA +  E E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVE-EVSPDLIILDLMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTHDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 QKS 123
           Q +
Sbjct: 119 QAA 121


>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ LV+D  M  +  
Sbjct: 11  QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAA-YRPDLLVLDIQMPRMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 70  LTAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 128


>gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 228

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  ++L+VD    + ++        GF V  A    EA      E  P+ L++D  + G 
Sbjct: 1   MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKL-AEQAPDLLLLDWMLPGT 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +RQ      + +  L  + + +  I G   GA+ ++ KPF+   L   ++ L
Sbjct: 60  SGIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKAL 119

Query: 118 PQMQKSKDENQFL 130
            + +      Q L
Sbjct: 120 LRRRAPDRLEQQL 132


>gi|17229772|ref|NP_486320.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131371|dbj|BAB73979.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 421

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D   I++ + +    + G+ V  AT+  +  E  +K   P  ++ D  M+ +   
Sbjct: 37  KILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHH-PALIICDWQMDEMDGL 95

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  +  F   L      E  + G   GA+ FL KP +   L+  +R   ++
Sbjct: 96  EVCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPIDVNELKARVRSGLRL 155

Query: 121 QKSKDENQF 129
            ++  E Q 
Sbjct: 156 YQTNQELQR 164


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V R+     GF V  A +  EA      E  P+ +V+D  +     +
Sbjct: 7   TVLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEAL-MMMDEESPDVIVLDWMLPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    V V  L    +    I G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 ARPAAAGLRLE 136


>gi|186686849|ref|YP_001870042.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186469201|gb|ACC85001.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 448

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +    +V   + ++ G+ V  A S   A +  +    P+ +++D  M G+  F
Sbjct: 11  TILVVDDNPTNIQVLFDVLSEIGYRVAIAKSGEAALQRVQS-YHPDIILLDVMMPGIDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++    D    + G   GA  ++ KP   E     +R   Q+
Sbjct: 70  ETCQRLKADCATCDIPVIFMTALSDTVDKVKGLSLGAVDYITKPIQHEEALARIRVHLQL 129

Query: 121 QKSKDENQF 129
           ++S+  +Q 
Sbjct: 130 RESQKSSQQ 138


>gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
          Length = 1127

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+ D   +  +V        G+ V  A    E  +  E+E  P  +++D  M G+   E
Sbjct: 722 LLVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEET-PELVLLDVMMPGMSGYE 780

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+    + + +  L      +  + G  +GAN +L KPFN++ L   ++   Q  
Sbjct: 781 VCQEVRKQYSHSQLPIIMLTALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHLQAS 840

Query: 122 KSK---DENQFLD 131
           +++    EN  L 
Sbjct: 841 QAEIRLTENDRLQ 853


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQFLDA 132
            +  +    +++
Sbjct: 119 SELPETQTNIES 130


>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R++ +      G+ + EA     A      E     +++D  + G+  
Sbjct: 6   NRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDY-GLVILDVMLPGMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ+       +  L  + +    + G   GA+ +++KPF+   + + ++ + +
Sbjct: 65  VEVCTRLRQV---KSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121

Query: 120 MQKSKD 125
              +  
Sbjct: 122 RSSATA 127


>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1403

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R   + L +   + V        A         P+ ++ D  M G+  F
Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTAL-KAIHSCHPDLVLTDVMMPGLDGF 686

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       + +  L      E  + G  AGA+ +L+KPF+   L   +    ++
Sbjct: 687 ELLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATLKL 746

Query: 121 QKSKDENQFLD 131
              + E    +
Sbjct: 747 SYLRQEATRRE 757



 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 6/116 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD     R          G  V    S  EA +   +   PN +V D  M  +    
Sbjct: 1279 ILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRS-APNVIVSDVGMPDMDGYM 1337

Query: 62   FIAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             I  +R +        +    L             R G    ++KP N   L   +
Sbjct: 1338 LIQQIRMLEAQQGREKIKAIALTAYAGEIDRQQALREGFQRHIIKPINPSVLIKTI 1393


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + R    D G+ V  A S        E+E   + LV+D  + GV  
Sbjct: 4   KRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   V +  +       + I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRA 123

Query: 122 KSKDENQFLDA 132
           ++  ++  +DA
Sbjct: 124 EAMAQSARIDA 134


>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 224

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R++ R +    GF V+EA    EA    E     +  +ID  M  + 
Sbjct: 1   MNKILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKA-DLAIIDLMMPNMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R      D+ V  L  + +  + I G +AGA+ +L+KPF    L   ++ L 
Sbjct: 60  GFELCQELRAS---YDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYQ 120


>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 246

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    R      G  V  AT+  EA E   +E +P+ +++D  M  +  
Sbjct: 7   KLVLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKV-REEMPDIVLLDIMMPVMDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R++   + V V  L  + + E  + G   GA+ ++ KPF++  L   +R + +  
Sbjct: 66  F-EALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRH 124

Query: 122 KSK 124
            ++
Sbjct: 125 YTQ 127


>gi|220906227|ref|YP_002481538.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862838|gb|ACL43177.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 566

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +    +V     ++ GF V  A     A +     + P+ +++D  M G+  F
Sbjct: 10  TILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANY-ITPDLILLDILMPGMDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V +L    D    + G   GA  F+ KP   E +   +    ++
Sbjct: 69  ETCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQYEEVLARVETHLRL 128

Query: 121 Q----KSKDENQFLD 131
           Q    K +++NQ L+
Sbjct: 129 QTLTRKLQEQNQRLE 143


>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +    + G+    A +  +A +  +++  PN +++D  + G+   
Sbjct: 5   KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDT-PNLILLDIMLPGMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +   +  +  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRR 123

Query: 121 QKSKD 125
             +K 
Sbjct: 124 TTAKS 128


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+VD    +  + +      G+ V  A     A +   K+  P+ +++D  + G+
Sbjct: 1   MQGTILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQ-QPDLILLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR   L     +  L  +      + G   GA+ ++ KPF+   L   ++  
Sbjct: 60  DGMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQ 117

Query: 118 PQMQK 122
            + Q+
Sbjct: 118 MRRQQ 122


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V+ A    EA E    E+ P+ +++D  +  + 
Sbjct: 11  MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 70  GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 128


>gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 245

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+V+    + ++ R       F                +E +P+ +V+D  +    
Sbjct: 11  MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIF-QEQVPDLIVLDLMLPKLD 69

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ P   D ++  L  + +    I G   GA+ +L+KPF+   L   +R L 
Sbjct: 70  GLEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALL 129

Query: 119 QMQKSKDE 126
           + Q  + +
Sbjct: 130 RRQLRQGQ 137


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R           + V       EA E   K    + +++D  +  V  
Sbjct: 6   RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHH-FDLVILDLMLPRVPG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 65  ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 121

Query: 120 MQKSKDENQF 129
              S  E Q 
Sbjct: 122 RVHSDVEPQR 131


>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 249

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MHRILLIDDDPAISELVSINLEMAGYEVHQAPDGIKG-QALALQLQPDLIMLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    TD+ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLDA 132
             K + E Q  ++
Sbjct: 120 RTKLQQEEQVSES 132


>gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
 gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    G+   EA     A      E  P  +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLV-EPYPELILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  L  ++ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMR 121

Query: 120 MQKSKDENQFLD 131
                   + +D
Sbjct: 122 RISPMAVEEVID 133


>gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A E    +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKI--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQR---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAML 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQQQ 125


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + ++ +    +  +    A +  EA     KE  P+ +++D  + G+ 
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIA-KEEKPDLILLDLMLPGMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  + +    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 62  GYEVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121

Query: 119 QMQ 121
           + +
Sbjct: 122 RRR 124


>gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1130

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+VD   +  ++  +     G+ V  A S  +A E  +    P  +++D  M  +   E
Sbjct: 723 LLVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHK-PALILLDIMMPEMSGYE 781

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +RQ     ++ +  L      +  + G   GAN +L KPFN+E L   ++   Q  
Sbjct: 782 VCSQLRQQYTPLELPIMMLSALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHLQAG 841

Query: 122 KS---KDENQFLD 131
           K+   +++N+ L 
Sbjct: 842 KTEFEREKNRQLA 854


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V+ A    EA E    E+ P+ +++D  +  + 
Sbjct: 11  MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 70  GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 128


>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 233

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 60/133 (45%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---V 59
           ++L+V+    +R++        GF   +A  V EA         P  +++D  + G    
Sbjct: 5   TILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDH-RPAMILLDWMLPGNQSG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +++  L +++ +  L    + +  + G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 64  IDLCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLR 123

Query: 120 MQKSKDENQFLDA 132
              +   ++ ++A
Sbjct: 124 RSSALSGDKPIEA 136


>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+VD    +  + +      G+ V  A     A +   K+  P+ +++D  + G+
Sbjct: 1   MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQ-QPDLILLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR   L     +  L  +      + G   GA+ ++ KPF+   L   ++  
Sbjct: 60  DGMDVCREVRGHQL--QTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQ 117

Query: 118 PQMQK 122
            + Q+
Sbjct: 118 MRRQQ 122


>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
          Length = 230

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAVIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|78101053|pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
 gi|78101054|pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
 gi|78101055|pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
          Length = 125

 Score =  151 bits (383), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +   +  G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEE-PDLILLDLMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 RQ+    ++ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-RQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 QKSKDE 126
           Q    +
Sbjct: 119 QDQFQQ 124


>gi|300865377|ref|ZP_07110187.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300336628|emb|CBN55337.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 424

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    V+ V + L    G  V  A    +          P+ ++ D  M    
Sbjct: 1   MAKILVIDDDVTVQIVLQDLLESEGHEVAIAFDGQDGLSQA-HHRPPDLIICDWMMPYID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P    VF   L    + +  + G   GA+ FL KP   E L   +R   
Sbjct: 60  GLEVCRQLKANPELATVFFILLTAREELDDRVKGLDNGADDFLSKPIETEELLARVRAGL 119

Query: 119 QMQKSKDENQF 129
           +++    + + 
Sbjct: 120 RLRGLTQQLER 130


>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
 gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
           shilonii AK1]
          Length = 1128

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+ D   +  ++        G+ V  A    E  +  E E  P+ L++D  M G+  F 
Sbjct: 724 LLVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEK-PDLLLLDIMMPGMSGFE 782

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + +  L      E  + G   GAN +L KPF++  L   +    Q  
Sbjct: 783 VCETIREQYDHAALPIIMLTALNQSEDRVRGFELGANDYLAKPFSKPELAARIAAHLQAS 842

Query: 122 KSKD---ENQFLD 131
           K+++   ENQ L 
Sbjct: 843 KAEERRAENQLLK 855


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 23  MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 82  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 139 RRNQATAQ 146


>gi|115376893|ref|ZP_01464114.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115366072|gb|EAU65086.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 986

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL D +  +R   R L     F V       EA    E   LP+ ++ D  M G+  F 
Sbjct: 618 ILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEA-RLPDLVLSDVMMPGMDGFA 675

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +   R  P    V    L      E  + G +AGA+ +L+KPF+   L   +  + ++ 
Sbjct: 676 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRLA 735

Query: 122 KSKDENQFLD 131
           + + + + L 
Sbjct: 736 RERAKRERLA 745


>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E E++P+ +++D  +     
Sbjct: 3   KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-EVMPDLILLDIMLPQKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   +R   +
Sbjct: 62  MEVCREVRKK---YDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLR 118

Query: 120 MQ 121
             
Sbjct: 119 RH 120


>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R++    F   G+ V  A    +A +      +P+ +++D  +  +   
Sbjct: 4   RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTA-VPDLIILDLMLPKMDGW 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V  L    D    +AG  AGA+ ++ KPF+   L   +R   + 
Sbjct: 63  EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122

Query: 121 QKS 123
             S
Sbjct: 123 SDS 125


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    + ++        GF V  A +  EA E  E E  P+ +V+D  M G+  F
Sbjct: 12  KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENE-QPDLIVLDVMMPGMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L  +   E  +AG  AG + ++ KPF+ + +   +R + +  +
Sbjct: 71  EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 130

Query: 123 SKDEN 127
           +  E 
Sbjct: 131 NAQEE 135


>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G+    A    +A E       P  +V+D  M  +   
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGT-YDPELIVLDVLMPRMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G  V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 71  TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128


>gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
 gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ +   +  G+ V  A +  E +     +  P+ +++D  + G   
Sbjct: 5   KRILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQ-YPDLILLDIMLPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    +VRQ      V +  L    D    I G   GA+ ++ KPF+   L   +R L +
Sbjct: 64  FTLCKYVRQDSS---VPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLR 120

Query: 120 MQKSKDE 126
             +   E
Sbjct: 121 RTQQLQE 127


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R      G+   +A    +A    E    P+ +V+D  M  +   
Sbjct: 10  RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMES-YAPDLVVLDVQMPRMDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G+ V +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 69  TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++ R      GF V EA    +  +  + +   + +++D  M  + 
Sbjct: 1   MKTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQP-IDLVLLDLMMPVLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L  + +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GWTVCKMLRRE---RKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVL 116

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 117 RRAEGIGE 124


>gi|291445851|ref|ZP_06585241.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348798|gb|EFE75702.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 30  QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 88

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 89  LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 147


>gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219]
 gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +LLVD    + +  +   +   F +  AT+  EA E  +KE + + +++D  M  + 
Sbjct: 1   MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKV-DLVLMDIMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++    ++ + +L  + + E  I G   GA+ ++ KPF+ E +   ++   + 
Sbjct: 60  GV-KATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRR 118

Query: 121 QKSKDENQ 128
            K     Q
Sbjct: 119 FKELGSQQ 126


>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+ V  A    E  +    ++ P+ +++D  M  +   
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKF-NQVKPDMVLLDVMMPKMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++    +  V  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  EVCRRIRKLG---NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120


>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
 gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V+ A    EA E    E+ P+ +++D  +  + 
Sbjct: 1   MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALII-DRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D  +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   ++ K       + G+ V       EA E   +E   + +++D  M  + 
Sbjct: 8   MAKILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELA-REGKFDLIILDLMMPKID 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R     ++V +  L    +    I G   GA+ ++ KPFN   L+  +R L + 
Sbjct: 67  GLQACMRIRE-FSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRR 125

Query: 121 QKSKDENQ 128
             +  ++Q
Sbjct: 126 SGAAVQHQ 133


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             K + E Q  +
Sbjct: 120 RTKLQQEEQVTE 131


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ ++     G+   EA    E  +   +E  P+ +++D  +  + 
Sbjct: 1   MSRILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMA-QEKNPDLILLDVMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R +       +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GFTV-LRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRR 118


>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
 gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    VR       +  G+ V  A    EA       L P+ +V+D  M  +    
Sbjct: 5   ILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRLDGLE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                   G DV +  L         + G  AGA+ +++KPF+ E L   +R L +  + 
Sbjct: 65  TTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRSRP 124

Query: 124 KDEN 127
           + + 
Sbjct: 125 ESQQ 128


>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 272

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E       P+ +V+D  M      
Sbjct: 34  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPT-CTPDLVVLDVMMPKLDGY 92

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 93  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 149

Query: 121 QKSKD 125
            + + 
Sbjct: 150 VEKEQ 154


>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 233

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    VR V R      GF V  A     A      E +P+ +V+D  M G   L
Sbjct: 7   RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQF-AERVPDLVVLDVMMPGLNGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    + V +  L    + E  IAG + GA+ ++ KPF+ + L   +  + + 
Sbjct: 66  EVCRRLRQ---TSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRR 122

Query: 121 QKS 123
            + 
Sbjct: 123 ARM 125


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    + ++        GF V  A +  EA E  E E  P+ +V+D  M G+  F
Sbjct: 6   KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENE-QPDLIVLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L  +   E  +AG  AG + ++ KPF+ + +   +R + +  +
Sbjct: 65  EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124

Query: 123 SKDEN 127
           +  E 
Sbjct: 125 NAQEE 129


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V+ A    EA E    E+ P+ +++D  +  + 
Sbjct: 1   MKKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKV-AEVEPDLILLDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V EA S  +  +    +  P+ +++D  M  +  
Sbjct: 7   RRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQH-PDLMILDVMMPEMDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + + V  L      + ++ G  +GA+ +L KPFN + L   +R L +
Sbjct: 66  WEVCRRLRE---FSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|87303913|ref|ZP_01086579.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87281609|gb|EAQ73617.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 248

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E      +P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFP-NCMPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
            + + 
Sbjct: 126 VEKEA 130


>gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 234

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + ++ R+     G+ V  + +  E  +    E  P+ +++D  +  V   
Sbjct: 4   TVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAF-EGKPDLVILDLMLPDVDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     ++ +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122

Query: 121 QKS 123
            + 
Sbjct: 123 TQQ 125


>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
           TK24]
 gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ +V+D  M  +  
Sbjct: 15  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATA-YRPDLVVLDIQMPRMDG 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 74  LTAARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132


>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 238

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R++ +      G+ + EA     A      E     +++D  + G+  
Sbjct: 6   NRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDY-GLVILDVMLPGMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ+       +  L  + +    + G   GA+ +++KPF+   + + ++ + +
Sbjct: 65  VEVCTRLRQV---KSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121

Query: 120 MQKSKD 125
              +  
Sbjct: 122 RSSATA 127


>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA         P+ +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAV-SSFSPDLILLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR     ++V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YEVCREVR---HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|114794859|pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
 gi|114794860|pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
 gi|114794861|pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
          Length = 124

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|297517635|ref|ZP_06936021.1| transcriptional regulator PhoB [Escherichia coli OP50]
 gi|6573458|pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
 gi|6573459|pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
          Length = 127

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    +R++        GF V  A +  EA    E+   P+ LV+D  +  +  F
Sbjct: 12  TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTN-PDLLVLDVMLPDMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +G +  V +L    D    I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 71  TVTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 130

Query: 123 SKDENQ 128
           S ++ +
Sbjct: 131 SLEDEE 136


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    +R++ +      G++V EA +  EA E  EK L  + +++D  M  
Sbjct: 1   MKEIRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLY-SVVLLDVMMPE 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R++   + V V  L         + G + GA+ +L KPF +E L   +  
Sbjct: 60  MDGFEVCREIRKV---SQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEA 116

Query: 117 LPQMQKSKDENQF 129
           + +     +    
Sbjct: 117 VLRRYGVSEPESR 129


>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    +R++   L +  GF   EA    EA +       P+ ++ID  M  + 
Sbjct: 3   MSKIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKML-NDNPDLVIIDVMMPNMD 61

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    H+R+     ++ V  L  + +    + G   GA+ +L KPF  + L   ++ L 
Sbjct: 62  GFELCRHLRR--YYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALL 119

Query: 119 QMQKSKDEN 127
           +  K +   
Sbjct: 120 RRYKIEASQ 128


>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 237

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + ++ R      G+ V    +  E     +   + + +V+D  + G+  
Sbjct: 7   KTILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKV-DLVVLDLMLPGMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 + +M    ++ +  L  + +    + G   GA+ ++ KPF+   L   +R + +
Sbjct: 66  IQICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLR 125

Query: 120 MQKSKDENQF 129
             +SK ++  
Sbjct: 126 RSESKQDSSR 135


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    + ++ +      G++V  A     A E  E     + L++D  + G
Sbjct: 1   MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGY-DLLILDIMLPG 59

Query: 59  ---VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                E    +R+    +D+ +  L      +  I G  AGA+ ++ KPF+ E L   ++
Sbjct: 60  PLNGFEVCKRIRE---FSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVK 116

Query: 116 ELPQMQKSKDE 126
            + +     +E
Sbjct: 117 AILRRSHPSEE 127


>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L+VD    + ++ +      G+ V  A     A +    E  P+ +++D  +    
Sbjct: 1   MPSVLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEK-PDLIILDIMLPEQD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     ++Q      + +  +    D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLAVCRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARL 119

Query: 119 QMQK 122
           +  +
Sbjct: 120 RRSE 123


>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
 gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 248

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  + G    
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQ-MDKLMQRELFSLVVLDLMLPGEDGI 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +D+ +  L  +      IAG  AGA+ +L KPFN + L   ++ + +   
Sbjct: 74  AICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133

Query: 123 SK 124
            +
Sbjct: 134 RE 135


>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae FF5]
 gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae 642]
 gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae Cit 7]
 gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
           [Halorhodospira halophila SL1]
          Length = 229

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    VR++        GF V  A    +  E   ++  P+ +++D  +     +
Sbjct: 4   RILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQL-RQRPPDLILLDWMLPQVSGV 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E+   +++      + +  L    + E  + G  +G + ++ KPF+   L   ++ + + 
Sbjct: 63  EWARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRR 122

Query: 121 QKSKDENQFLDA 132
                 +  L+A
Sbjct: 123 TAPSTADTPLEA 134


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A     A     ++  P+ +V+D  +  +  F
Sbjct: 11  RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSAL-RLARDTHPDLVVLDVMLPDMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  V V +L    D    + G   G + ++ KPF+ E +   +R + + 
Sbjct: 70  SVTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEN-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TENIE 123


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++  +     G+      +  E  E   +E LP+ +++D  + G++
Sbjct: 1   MKKVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRE-LPDLILLDLMLPGMM 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                + +R       + V  L    D    + G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GTEVCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAIL 119

Query: 119 QMQKSK 124
           +    +
Sbjct: 120 RRSSQE 125


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            L++VD    +R +        GF V  A+   EA E    E  P+ +V+D  +  +  F
Sbjct: 13  RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIV-EGEPDLVVLDVMLPDMDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D    + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 72  TVTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQ 131

Query: 123 SKDEN 127
           + D +
Sbjct: 132 AHDAD 136


>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+V+    + +V R      GF V EA+   +A E    +   + +++D  +  + 
Sbjct: 1   MDRILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELV-SDFNFSLIILDLMLPHMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+   G ++ +  L  +   E+ I G   GA+ +++KPF+   L   +  + 
Sbjct: 60  GEDVCKQLRRQ--GNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVL 117

Query: 119 QMQKS 123
           +  +S
Sbjct: 118 RRYRS 122


>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
 gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
          Length = 1389

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R+    L    G+ V E T   EA     +   P+ +V D  M     L
Sbjct: 641 RVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARR-RTPDLVVSDVMMPRLDGL 699

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E ++ +R  P    V V  L      E  I G RAGA+ +L+KPF    L   +R   ++
Sbjct: 700 ELVSRLRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARVRANVEL 759

Query: 121 QKSKD 125
            + +D
Sbjct: 760 ARLRD 764


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + +V +    + G+         EA+E    E  P+ +++D  +     +
Sbjct: 7   KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFL-EYKPDLVLLDIMLPHVDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R+        V  L  + +    + G   GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKEYE---TPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRR 122

Query: 121 QKSKDENQ 128
               +EN+
Sbjct: 123 YNVDNENK 130


>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 218

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E     +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ +   
Sbjct: 118 KQEQQEEFQ 126


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 23  MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 82  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 139 RRNQATAQ 146


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E E++P+ +++D  +     
Sbjct: 4   KRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVE-EVMPDLILLDIMLPQKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   +R   +
Sbjct: 63  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 274

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  V R      GF V  A     A E       P+ +++D  + G+  
Sbjct: 32  RRILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELA-ASRQPDLVILDRMLPGLDG 90

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      V V  +      +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 91  VEVCRRLRQ---TMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLR 147

Query: 120 M 120
            
Sbjct: 148 R 148


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+++    +  + ++     G+ V  A    E     + E  P+ +++D  +     +E
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQID-ERQPDLVLLDWMLPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P   ++ V  L    +    + G   GA+ +L KPF+   L   +R + +  
Sbjct: 64  VCRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
           [Saccharophagus degradans 2-40]
          Length = 234

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R + R       + V EA    +A      +  P+ +++D  + G   
Sbjct: 4   KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIV-DKKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  + +++ +  L  + + +  + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 226

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + ++        GF V +      A     +E  P  +++D  + G+  
Sbjct: 5   QKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKI-QEKPPKLVILDIMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    + V +  L  + D    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  IALCKEVRK---FSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120

Query: 120 MQKSKDENQ 128
             + + E++
Sbjct: 121 RYEGESEDK 129


>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  D+ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ R      G+ V       +A +  E    P+ +++D  + G+  
Sbjct: 4   TKILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHK-PDLVLLDIMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+        V  +  + +    + G   GA+ +++KPF+ + +   ++ + +
Sbjct: 63  WQVCREIRKKSEK---PVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLR 119

Query: 120 MQKSKD 125
                +
Sbjct: 120 RYSGAE 125


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V+ A    EA E    E+ P+ +++D  +  +  
Sbjct: 5   KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKV-AEVDPDLILLDLMLPKMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  LEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 121


>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
 gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            ++L+VD    +R++ R   +  GF   EA    EA      +  P+ +++D  + G   
Sbjct: 4   KTILIVDDEAPIREMIRMSLDMAGFNCREAADTREAY-RVIADSKPDLVLLDWMLPGGSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E +  +R+  L  D+ V  L  + D +  I G   GA+ ++ KPF    +   ++ L +
Sbjct: 63  IELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 1127

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   I  ++        G+ V        A E    E  P  +++D  +  +   +
Sbjct: 723 ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVRNET-PQLILLDIMIPDMSGYD 781

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + +  L      E  + G  +GAN FL KPFN++ L   +       
Sbjct: 782 VCVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFLSKPFNQKELLARITAHLAAS 841

Query: 122 KSKD---ENQFLD 131
           +++    ENQ L+
Sbjct: 842 QAEQRKMENQKLE 854


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ V +A    EA +    E + +  ++D  + G+  
Sbjct: 28  KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESV-DMFIVDIMLPGMDG 86

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R M    +  V +L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 87  FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146

Query: 120 MQKSKDENQ 128
             +   + +
Sbjct: 147 RIQLSAQER 155


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V+ A    EA E  E E+ P+ +V+D  +     
Sbjct: 3   KKILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVE-EVQPDLIVLDIMLPKRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     ++ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 218

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA    E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +++ V  L      +  + G  AGA+ +L KPF  E L   +R L 
Sbjct: 60  GFTVCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 218

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|262199700|ref|YP_003270909.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262083047|gb|ACY19016.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 397

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD +     V     ++ G+ V  A    EA E   + + P+ +++D  M G+  F 
Sbjct: 22  VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASR-IQPDIILLDVMMPGIDGFE 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE--LPQ 119
               ++     +D+ + ++    D    + G RAGA  ++ KPF    +   +R   + +
Sbjct: 81  TCRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVLARVRTHVVLR 140

Query: 120 M--QKSKDENQFLDA 132
               + +D+ + L+A
Sbjct: 141 RLDAELRDQKRVLEA 155


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+     R+V  +     GF V +A +  EA     +E  P+ +V+D  +     +E
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEAL-MLVEEAGPDVIVLDWMLPSVSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    V +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 68  VCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127

Query: 122 K 122
           +
Sbjct: 128 R 128


>gi|219849342|ref|YP_002463775.1| response regulator receiver modulated serine phosphatase
           [Chloroflexus aggregans DSM 9485]
 gi|219543601|gb|ACL25339.1| response regulator receiver modulated serine phosphatase
           [Chloroflexus aggregans DSM 9485]
          Length = 385

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D S   R +        G  +  A+   +  E+ ++E   + +++D  M  +  F
Sbjct: 8   RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREP-FDVILLDLMMPEMDGF 66

Query: 63  IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + V  +    + + ++    AGA  +L KPFN+  L   +    + 
Sbjct: 67  TVLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFNQTLLYAKINACLER 126

Query: 121 QKSKD-ENQFLDAI 133
           ++ +D E  +L+AI
Sbjct: 127 KRLRDSEQAYLNAI 140


>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 248

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  +      G+    A    +A E       P+ +V+D  M  +  
Sbjct: 15  QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATA-YRPDLVVLDIQMPRMDG 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G    +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 74  LTAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 132


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    + ++         F V       EA     +E  P+ +++D  +EG   +
Sbjct: 5   RVLLVEDDAALAELVSWHLEREDFEVERTADGEEAI-LLARETPPDLVLLDWMIEGVSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R++    +V +  L    + E  + G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123

Query: 121 QKSKDENQFLD 131
            +     + L 
Sbjct: 124 VRPALAGERLS 134


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   I  +V  +      + V +A S  EA    E     + +++D  M  +   E
Sbjct: 721 ILVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDIMMPNMTGYE 780

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R+      + V  L  +     ++ G + GAN +L KPF ++ L   ++   ++ 
Sbjct: 781 VCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHIKLS 840

Query: 122 KSKDENQF 129
           K     + 
Sbjct: 841 KITKAYER 848


>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +R++ +    + G+ V  A +   A    E E   + +V+D  +    
Sbjct: 1   MAKILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE--IDLVVLDLMLPEVD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + +  L  + +  + I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 59  GMEVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIF 118

Query: 119 QMQKSKDENQ 128
           +  K    +Q
Sbjct: 119 RRIKELKVDQ 128


>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 239

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    R      G  V  A++  EA E    E +P+ +++D  M  +  
Sbjct: 7   KLILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDE-MPDVVLLDIMMPVMDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R++   + V V  L  + D E  I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 66  F-ETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRH 124


>gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
 gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
          Length = 232

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A      +   + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLL--DNSIDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQFLD 131
           +     ++ Q +D
Sbjct: 116 RRSNWSEQQQNID 128


>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 228

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R V +      G+ V  AT+  E  +   +E  P+ +V+D  + G+   
Sbjct: 4   TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEE-QPDLIVLDLMLPGMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +DV++  L    D    +AG R GA+ +L KPF+   L   +  + + Q+
Sbjct: 63  EITARLRER-SDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQR 121

Query: 123 SK 124
           +K
Sbjct: 122 NK 123


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A+   E     + E   + L++D  +  +  
Sbjct: 3   QRILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEP-FDLLILDLMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ        +  L  + D    + G   GA+ ++ KPF+   +   +R + +
Sbjct: 62  LDICKQLRQNK--KMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILR 119

Query: 120 MQKSKDE 126
                 E
Sbjct: 120 RSAQLSE 126


>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 218

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +      G+ V  A    EA +   KE+  + +++D  + 
Sbjct: 1   MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 60  KIFGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
 gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
 gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
          Length = 235

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +RK+ +      G+   EA     A E    E   + +++D  + G+
Sbjct: 1   MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSEN-FHCILLDIMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ +
Sbjct: 60  DGIQVCKRLREE---KSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAI 116

Query: 118 PQMQKS 123
            +  +S
Sbjct: 117 LRRSQS 122


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A +  EA +  E E  P+  V+D  +  +  F
Sbjct: 9   RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAE-EFQPDLAVLDVMLPDMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L      E  I G   G + ++ KPF+ + +   +R + +   
Sbjct: 68  TVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 123 SKDEN 127
           S D++
Sbjct: 128 SLDDD 132


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SQ 120


>gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 244

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD    V +V        GF V  A    +A         P+ +V+D  + G+ 
Sbjct: 12  MQSILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLA-AGRRPDLVVLDLMLPGMD 70

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  L    D +  I G   GA+ ++ KPF+   L   +  + 
Sbjct: 71  GLEVCRRLRAGEQ-ARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVL 129


>gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus]
          Length = 267

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V     +  G+ V +A     A         P+ +V+D  +  +  F
Sbjct: 19  RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAH-RPDLVVLDLMLPAMDGF 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R    G  V V  L    D E  I G   GA+ ++ KPF+   L   +  + 
Sbjct: 78  EVCRRMREHGP-VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVL 132


>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L++D    +R++        G+   EA ++ +A E       P+ +++D  M G   
Sbjct: 9   KKVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDH-RPDLILVDWMMPGGSG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     ++ V  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 68  IELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 127

Query: 120 MQKSKDENQFLD 131
               +  ++ ++
Sbjct: 128 RATPQGVDEPIE 139


>gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB]
 gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 243

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +      + GF V  A    +  +        + +V+D  M G     
Sbjct: 10  ILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQ-MDKLRSREHYHLIVLDLMMPGEDGLT 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G    +  L  + D    I G   GA+ +L KPFN   L   +  + + Q S
Sbjct: 69  ICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQGS 128

Query: 124 K 124
           K
Sbjct: 129 K 129


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +   +  G+ V  A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MPKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEK-PDLILLDLMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 RQ+    ++ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-RQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 QKSKDEN 127
           Q    ++
Sbjct: 119 QDQLQQD 125


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ L++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAE-RPDILILDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ + + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRR 118

Query: 121 QKSKDENQFLDA 132
                ENQ  +A
Sbjct: 119 TDLTIENQEAEA 130


>gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
 gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
          Length = 229

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A  F   +  P+ +++D  + G   
Sbjct: 3   RRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLI-DPYPDLVLLDWMIPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     D+ +  L  + + E  + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 62  IQVIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      GF V  A    EA E   KE  P+ +++D  +     
Sbjct: 3   KHILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERV-KERKPDLMLLDIMLPYKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ +++KPF+   L   ++   +
Sbjct: 62  MEVCREVRKQ---YDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLR 118

Query: 120 MQKSKDEN 127
            Q+   ++
Sbjct: 119 RQQVAADD 126


>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +      G+ V  A    EA +   KE+  + +++D  + 
Sbjct: 1   MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 60  KISGEEVCSKIRE---FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 226

 Score =  150 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++        G+    A    E  E  E+ + P+ +++D  + G+ 
Sbjct: 1   MQTVLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVER-VQPDLILLDLMLPGMF 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  V++      + V  L  + +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GTDVCKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVL 119

Query: 119 QMQ 121
           + +
Sbjct: 120 RRK 122


>gi|167630424|ref|YP_001680923.1| response regulator receiver modulated serine phosphatase
           [Heliobacterium modesticaldum Ice1]
 gi|167593164|gb|ABZ84912.1| response regulator receiver modulated serine phosphatase
           [Heliobacterium modesticaldum Ice1]
          Length = 394

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++ R      G+ V  A +  +A E  ++  LP+ +++D  M G+  F 
Sbjct: 12  ILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQR-TLPDLILLDVMMPGMNGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +++ P    + V  +    + E  I G  AGA+ F+ KPFNR  L   ++ L +++
Sbjct: 71  VCAKLKEDPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRVELLTRVKSLLRIR 130

Query: 122 KSKDENQ 128
           K   + +
Sbjct: 131 KLYRQLE 137


>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 246

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+         G+ V  A     A E   ++  P+ +V+D  M  +   
Sbjct: 2   RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARD-QPDIVVLDVMMPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G DV V  L         ++G   GA+ +L+KPF  E L   +R L + 
Sbjct: 61  ETCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRR 118


>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 244

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++        G+ V  A    EA     +   P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITF-RNATPDLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122

Query: 121 QKSKDEN 127
            +    N
Sbjct: 123 VEKSGAN 129


>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 232

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    + ++ +      G+  FEA +   A +   K    + +++D  M    
Sbjct: 1   MKNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDII-KNNKIDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALF 119

Query: 119 QMQKSKD 125
           +  ++  
Sbjct: 120 RRIENLK 126


>gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1128

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+VD   +  +V        G+ V  A +  EA E    E  P  +++D  M G+    
Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVRTAKNGEEAVESVVHEK-PELMLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + V  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 783 VCEVLRKDYDHAQLPVIMLTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHLTAS 842

Query: 122 KSKD---ENQFLD 131
           K++    ENQ L 
Sbjct: 843 KAEQRRIENQQLQ 855


>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    R      G  V  AT+  EA E   +E +P+ +++D  M  +  
Sbjct: 7   KLVLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREE-MPDIVLLDVMMPVMDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R++   + V V  L  + + E  + G   GA+ ++ KPF++  L   +R + +  
Sbjct: 66  F-EALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRH 124

Query: 122 KSK 124
            ++
Sbjct: 125 YTQ 127


>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 239

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +R++ R      G+ V EA    EA      +  P  +++D  +     
Sbjct: 6   KAILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDE-PLLIILDLMLPKIDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    ++  P    + +  L    D    I G   GA+ ++ KPF+   +   +R + +
Sbjct: 65  LEVCRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIR 124

Query: 120 MQKSKDENQ 128
             + + + +
Sbjct: 125 RVEDRRKPE 133


>gi|320355079|ref|YP_004196418.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123581|gb|ADW19127.1| response regulator receiver modulated diguanylate cyclase
           [Desulfobulbus propionicus DSM 2032]
          Length = 326

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 1   MDS--------LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVI 52
           M          +L+VD + +V K+   +    G+ V +A S  +A      + LP+ +++
Sbjct: 4   MKKKEKTTDASILIVDDNPVVIKLLHAMLARAGYQVVQAASGQQALALLASDCLPDLILL 63

Query: 53  DESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
           D  M G   LE    +++ P   D+ V ++    D E ++ G  AGA  +++KP  +E L
Sbjct: 64  DIDMPGVSGLEACRLIKENPRTADIPVIFVTASNDKEHIVNGFAAGAQDYIIKPSTQEEL 123

Query: 111 RFAMRELPQMQKSKDENQFLDA 132
              +R    + +++   +   A
Sbjct: 124 LARVRTHLALCRTQQALKASRA 145


>gi|291572094|dbj|BAI94366.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 378

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D   I+R++ +      G+ V  A++  E  E   KEL P  ++ D  M    
Sbjct: 1   MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKA-KELRPALMICDWIMPRLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    V+ MP  +    + L      +  + G  AGA+ FL KP     L   +R   
Sbjct: 60  GIEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGL 119

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 120 RLHQLSQDLQTQKQLLE 136


>gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
 gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
          Length = 230

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V  +     GF V  A +  EA      E  P+ +V+D  M     +E
Sbjct: 9   VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAM-MLVDETAPDLIVLDWMMPNLSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 68  VCRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRRV 127

Query: 122 KSKDENQFLD 131
           +     + L+
Sbjct: 128 RPAATGERLE 137


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  150 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++        G++  EA     A          + +++D  M  + 
Sbjct: 1   MAKILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQL-SGGGFDLVILDLMMPFMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        +  V  L    +    +AG  +GA+ +++KPF+   L   +R +   
Sbjct: 60  GMTCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNR 119


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++   +    GF V  A    E  +    E   N +++D  M  + 
Sbjct: 1   MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLL-AEQHFNLVLLDVMMPKLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R      D  V  L    D +  + G  AGA+ +L KPF+   L   +R + + 
Sbjct: 60  GFAMLARLR-KTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 118

Query: 121 QKSKDENQ 128
            +S    +
Sbjct: 119 TQSTQPQR 126


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +R +         + V EA +  +  +    E  P+ +++D  + G   + 
Sbjct: 6   ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLL-EHQPDCVLLDWMLPGVSGIS 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ        +  L    +    + G  +GA+ +++KPF+   L   ++ L + Q
Sbjct: 65  LAQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQ 124

Query: 122 KSKD 125
             + 
Sbjct: 125 SPEK 128


>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 218

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA    E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+   EA    EA      +  P+ +++D  +  +  
Sbjct: 3   KKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQN-PDLILLDIMLPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    R++       +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 62  FTVC-RKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119


>gi|209523935|ref|ZP_03272487.1| response regulator receiver modulated serine phosphatase
           [Arthrospira maxima CS-328]
 gi|209495607|gb|EDZ95910.1| response regulator receiver modulated serine phosphatase
           [Arthrospira maxima CS-328]
          Length = 394

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D   I+R++ +      G+ V  A++  E  E   KEL P  ++ D  M    
Sbjct: 17  MFKILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKA-KELRPALMICDWIMPRLT 75

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    V+ MP  +    + L      +  + G  AGA+ FL KP     L   +R   
Sbjct: 76  GIEVCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGL 135

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 136 RLHQLSQDLQTQKQLLE 152


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QK 122
             
Sbjct: 119 SH 120


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ L++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAE-RPDILILDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ + + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRR 118

Query: 121 QKSKDENQFLDA 132
                ENQ  +A
Sbjct: 119 TDLTIENQEAEA 130


>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 229

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++        G+ V  A +   A +  + +  P+ +V+D  + G+   
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQT-PSLVVLDIMLPGIDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     + +  L  + +    + G   GA+ +++KPF  + L   ++ + + 
Sbjct: 65  QVCREIRKVSS---IPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121

Query: 121 QKSKD 125
            + K+
Sbjct: 122 YEHKE 126


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    + ++        G+ V  A    EA     +E+ P+ +V+D  M G+  F 
Sbjct: 16  LLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKA-REVEPDLVVLDVMMPGLDGFE 74

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R       V V +L      E  + G + G + ++ KPF+ + L   +R L +    
Sbjct: 75  VVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSGH 134

Query: 124 KDE 126
           +++
Sbjct: 135 REQ 137


>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 237

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA     +E  P+ +++D+ +  + 
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEK-PDLVLLDQMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+   ++  V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GV-EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118

Query: 121 QKSKDENQ 128
           +K+  + Q
Sbjct: 119 RKAVAQAQ 126


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
             K + E Q
Sbjct: 120 RTKLQQEEQ 128


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + ++ +    + G+    A +  +A     KE  P+ +++D  + G+ 
Sbjct: 3   MEKILIVDDEEHICELIKFNLENNGYECICALNGIDALNIV-KEEKPDLVLLDLMLPGMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  + +    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 62  GYDVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVL 121

Query: 119 QMQ 121
           + +
Sbjct: 122 RRR 124


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    + ++    F   GF V  A +  E          PN +++D  + G    
Sbjct: 6   KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHF-SNNPPNIVILDIMLPGKDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+M   +D+ +  L  + +    + G   GA+ +++KPF+ + L   ++ + + 
Sbjct: 65  DICREIRRM---SDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRR 121

Query: 121 QKS 123
              
Sbjct: 122 YNQ 124


>gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMV-EPYPDMVLLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +Q      + +  L    + E  I G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQIAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + ++
Sbjct: 122 RVAPTSLEEAIE 133


>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
           [Pseudomonas fluorescens SBW25]
 gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
 gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens SBW25]
 gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 236

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEK-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 234

 Score =  150 bits (380), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    +R + R      GF V EA    +A  +   +  P+ +++D  + G  
Sbjct: 1   MKKILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAY-WLITDQDPDLVLLDWMLPGGS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E ++ +++      + V  +  +   E +I G   GA+ ++ KPF+ + L   +R + 
Sbjct: 60  GIELLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIF 119

Query: 119 QMQKSKDENQFL 130
           +  +  D N  L
Sbjct: 120 RHTEDDDVNHQL 131


>gi|159037489|ref|YP_001536742.1| response regulator receiver modulated diguanylate cyclase
           [Salinispora arenicola CNS-205]
 gi|157916324|gb|ABV97751.1| response regulator receiver modulated diguanylate cyclase
           [Salinispora arenicola CNS-205]
          Length = 326

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    + +         G+ V  A    EA E    +  P+  V+D  M     LE
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGYEVIHARDGQEALE-VIAQHRPDLAVVDLMMPRVDGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P+   + V  L  +      + G  AGA+ +L+KPF+   L   +    +  
Sbjct: 70  LTRRLRADPMTAALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRRN 129

Query: 122 KSKDE 126
           K   E
Sbjct: 130 KEFRE 134


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEK-PDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKS-----KDENQFLDAI 133
            +      ++E+  L ++
Sbjct: 119 TELIAVDNQEEDSKLQSL 136


>gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
 gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
          Length = 232

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A+   +A      +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL--DNSIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQF 129
           +     ++ Q 
Sbjct: 116 RRSNWSEQQQQ 126


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++        G+ V  A +   A +  + +  P+ +V+D  + G+   
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQT-PSLVVLDIMLPGIDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     + +  L  + +    + G   GA+ +++KPF  + L   ++ + + 
Sbjct: 65  QVCREIRKVSS---IPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121

Query: 121 QKSKD 125
            + K+
Sbjct: 122 YEYKE 126


>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
 gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  TFAKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 242

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +   ND GF V  A    +  +   K+ +P+ ++ D  M      
Sbjct: 16  RILLVDDEPGIRTAVQAYLNDEGFDVLTAIDGEDGLQKA-KQFMPDVVITDVMMPQCDGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+        V +L  +        G +AG + ++ KPF+ + L   ++ + + 
Sbjct: 75  ELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELVARVKNVVKR 134

Query: 121 QK 122
           Q+
Sbjct: 135 QE 136


>gi|116749733|ref|YP_846420.1| response regulator receiver protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698797|gb|ABK17985.1| response regulator receiver protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 227

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      +V  ++    G+ +  ATS  +A +    +   + +++D  M  +  F
Sbjct: 10  NILIVDDISKNIQVLGNILRRDGYSLSFATSGTQALDMVFADDY-DLILLDVMMPEMDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++P G  + + +L  + D E ++ G +AG   ++ KPFN E L   +    ++
Sbjct: 69  EVCRKIRELPDGQAIPIIFLTAKTDEEDIVKGFQAGGTDYVTKPFNSEELLARVHAHLEL 128

Query: 121 QKSKDENQF 129
           ++++DE Q 
Sbjct: 129 KRARDEIQL 137


>gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1336

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD +   R   RH      + V  A++  EA     +EL P+ ++ D  M G+    
Sbjct: 1088 LLVVDDNEDFRLFMRHSLELQ-YRVEVASNGQEALSKI-QELQPDLVISDVMMPGMDGNE 1145

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++       + V  L      E  + G   GA+ ++ KPFN   L   +R+L ++ 
Sbjct: 1146 LCRLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLIELS 1205

Query: 122  KSKDENQ 128
            +     Q
Sbjct: 1206 RYHRSAQ 1212


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEK-PDLIVLDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RSEIAS 125


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 23  MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 82  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 139 RRNQATAQ 146


>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
          Length = 229

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 221

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +R+V        G+ V EA    EA          + +V+D  +  + 
Sbjct: 1   MARVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKI---PQASLVVLDLMLPRLS 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           ++ V  L  + + E+ I G   GA+ ++ KPF+   +   +R L + 
Sbjct: 58  GWEVARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRR 117

Query: 121 QKSKDEN 127
              K E 
Sbjct: 118 SGLKAEL 124


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F          A         PN +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAF-SSFAPNLILLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRQK---SNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 228

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+V+    ++++        G     A SV +A +   +E LP+ +++D  + G+  +
Sbjct: 4   NILVVEDEPAIQELLALNLTQAGHNPVRALSVEQA-QMLIREALPDLILLDWMLPGMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   ++   L   + +  L    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  L+
Sbjct: 123 RAPQMTDDPLE 133


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +      G+    A +  +A +   KE +P  +++D  + G+   
Sbjct: 5   KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIV-KEEMPQLILLDVMLPGMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + + V  +    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRR 123

Query: 121 QKSK 124
              K
Sbjct: 124 TALK 127


>gi|298482083|ref|ZP_07000271.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271640|gb|EFI13213.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1458

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  ++   +++ +   + V  A++  E  +    + LP+ ++ D  M  +   
Sbjct: 1200 SILVVEDNEELKAFLKNILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1257

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1258 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1317

Query: 121  QKSKDE---NQFLD 131
            +K+  E   N+ ++
Sbjct: 1318 RKALQEIYMNRLME 1331


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 23  MARILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 81

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 82  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 138

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 139 RRNQATAQ 146


>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ +  H +  +  +     G     A     A E   ++  P  +++D+ M G+ 
Sbjct: 1   MATILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDK-PELILLDQMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     ++ V +L  +   E  I G   GA+ ++ KPF+ + L   +  + 
Sbjct: 60  GHGVLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVL 119

Query: 119 QM 120
           + 
Sbjct: 120 KR 121


>gi|153873132|ref|ZP_02001814.1| signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152070402|gb|EDN68186.1| signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 480

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD     R+  + L     + +  A S  EA      EL+P+ +++D  M G+  F
Sbjct: 6   RLLIVDDEKRGREALKILLASENYQLILAASGEEALLKAP-ELVPDLILLDVMMPGMDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H+R  P   +V +  L    D +  + G  AGA+ F++KPF+R  L   +R + ++
Sbjct: 65  EVCQHIRAHPQLGEVPIIMLTAMSDRKTRLRGIEAGADDFIIKPFDRVELLARVRTIIRL 124

Query: 121 QKSK 124
            + +
Sbjct: 125 NRYR 128


>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
          Length = 257

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + +    D G++V  A    +  +   +  L + +V+D  +     
Sbjct: 23  QRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQ-MDKLMQRELFSLIVLDLMLPNEDG 81

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R     +D+ +  L  +      IAG  AGA+ +L KPFN + L   ++ + + Q
Sbjct: 82  ISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQ 141


>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
 gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
          Length = 251

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  + R      G+ V +AT      +    ++LP+ +++D  +  V 
Sbjct: 1   MARILIIEDDPSILDILRINLELAGYEVVKATDGVRG-QALALQVLPDLIILDLMLPQVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L      +  I G  AGA+ +L KPF  + L   +R L 
Sbjct: 60  GLTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    ++++  +        V    +  EA +      LP+ +++D  + G+   
Sbjct: 4   TILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKII-NHTLPDLVLLDWMLPGMSGA 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R+     D+ +  L    D    + G  +GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DFARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  ++
Sbjct: 123 RAPEAADDVVE 133


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+     R+V  +     GF V +A +  EA     +E  P+ +V+D  +     +E
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEAL-MLVEEAGPDVIVLDWMLPSVSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    V +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 68  VCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127

Query: 122 K 122
           +
Sbjct: 128 R 128


>gi|22298696|ref|NP_681943.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294876|dbj|BAC08705.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 391

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L++D     R + R    D G+ V  A+   E       E  P  ++ D  M     LE
Sbjct: 10  ILVIDDDPTTRLLLRKTLRDLGYSVSVASHGREGIAIATAEK-PALIICDWMMPELDGLE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
              H++Q    +  F   L  + + +  I G  AGA+ FL KP +   LR  ++   ++ 
Sbjct: 69  VCRHIKQDEELSRSFFILLTAKGELQDRIQGLDAGADEFLSKPIDPNELRARIQAGLRLY 128

Query: 121 ---QKSKDENQFLDA 132
              Q    + Q L+A
Sbjct: 129 QLSQDLLKQKQLLEA 143


>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1152

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           S+L+VD   +  +V  +  +   + V  A S  +A +  E+E  P+ +++D  M  +   
Sbjct: 718 SILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEET-PDLILLDIMMPHMTGY 776

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + V  L        ++ G +AGAN ++ KPF+R+ L   +R   Q+
Sbjct: 777 EVCQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSRDILLARVRTQLQL 836

Query: 121 QKS---KDENQFLD 131
            ++     EN  L 
Sbjct: 837 GRAYQTLAENMRLK 850


>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 231

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L++D    +R++        G+   EA +     E       P+ +++D  M G   
Sbjct: 4   KKVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDH-RPDLILVDWMMPGGSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     ++ V  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 MQKSKDENQFLD 131
               +  ++ ++
Sbjct: 123 RATPQGVDEPIE 134


>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
           with phor [Cupriavidus taiwanensis LMG 19424]
 gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  NFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Alkaliphilus oremlandii OhILAs]
 gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Alkaliphilus oremlandii OhILAs]
          Length = 451

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +R   +      G+ ++EA +  +  E  E E+ P+ +++D  M  +  
Sbjct: 3   KRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLE-EIYPDLILLDLRMPVMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R   +  D+ V  L      E  +   + GA  ++ KPF+ E L+  +++   + 
Sbjct: 62  MEALQRIKEINQDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEELKVLIKKALNVG 121

Query: 122 KSKDENQFLDA 132
           + K E  +L  
Sbjct: 122 ELKSEVNYLRE 132


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A S  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGG-IDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 117 RRNQGAVE 124


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++  + F   G+ V       EA      E  P+ +++D  + G   +
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEAL-LLAAEDTPDLVLLDWMIGGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L    D +  + G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRR 123

Query: 121 QK 122
            +
Sbjct: 124 VR 125


>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 3/134 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + +  +       F V  A +  EA +   +E  P+ +V+D  M G+
Sbjct: 1   MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEH-PDLVVLDVMMPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +    R     +D+ +  L  +   +  + G + G + +L KPF+   L   +R +  
Sbjct: 60  DGWEVCSRLHE-LSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILA 118

Query: 120 MQKSKDENQFLDAI 133
             +     Q  + I
Sbjct: 119 RAQRSLPAQRKNQI 132


>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Cupriavidus metallidurans CH34]
          Length = 235

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  TFAKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
 gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 218

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 218

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 243

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    R      G  V  A++  EA E    E +P+ +++D  M  +  
Sbjct: 7   KLILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDE-MPDVVLLDIMMPVMDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R++   + V V  L  + D E  I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 66  F-ETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRH 124


>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Psychrobacter sp. 1501(2011)]
          Length = 240

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVL 60
             +L+++    + ++         + V  A +  E  +    KE   + +++D  +  + 
Sbjct: 3   KQILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMD 62

Query: 61  E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R  +      V +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 63  GMQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122

Query: 117 LPQMQKSKDE 126
           + +  +  ++
Sbjct: 123 VLRRHEQPNQ 132


>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
 gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
          Length = 229

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGV 59
           M ++L+VD    +R +  + F+  GF V        A E  ++     + +V+D  + G+
Sbjct: 1   MPTVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G  + +  L    +   ++ G   GA+ ++ KPF+   L    R + +
Sbjct: 61  DGLEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLR 120

Query: 120 MQKSKDEN 127
             +S++++
Sbjct: 121 RTESREDD 128


>gi|153868898|ref|ZP_01998627.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074527|gb|EDN71372.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 378

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+VD      +V   + +  G+ V  A +  +A         P+ +++D  M  
Sbjct: 1   MKPETILVVDDLADNLRVLIGILSQQGYKVRPARNGQQALLMARTSP-PDLILLDIMMPE 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        ++       + + ++    +    I     GA  ++ KPF  E +   +  
Sbjct: 60  MDGYEVCQQLKADQKTHHIPIIFISALNEVLDKIKAFSLGAVDYITKPFQAEEVLARVET 119

Query: 117 LPQMQKSKDEN 127
             ++ +   E 
Sbjct: 120 HLKLHRLHHEL 130


>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
 gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
          Length = 228

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V  +     GF V  A +  E    C +E  P+ +V+D  M     +E
Sbjct: 7   VLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGL-LCVEENAPDVIVLDWMMPNLSGIE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 66  VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 125

Query: 122 KSKDENQFL 130
           +     Q L
Sbjct: 126 RPATVGQVL 134


>gi|125974309|ref|YP_001038219.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum ATCC 27405]
 gi|256003472|ref|ZP_05428462.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum DSM 2360]
 gi|281418364|ref|ZP_06249384.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum JW20]
 gi|125714534|gb|ABN53026.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum ATCC 27405]
 gi|255992496|gb|EEU02588.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum DSM 2360]
 gi|281409766|gb|EFB40024.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum JW20]
 gi|316941457|gb|ADU75491.1| response regulator receiver modulated diguanylate cyclase
           [Clostridium thermocellum DSM 1313]
          Length = 310

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D +  + K+   +  + G+ V  A++  +  E    E  P+ +++D  M  +  
Sbjct: 4   KKILVIDDTEFMTKLISDVLMNEGYEVVTASNGRQGIEMVRIEK-PDLVLLDVVMPDMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      + +  L  + + +  + G   GA+ ++ KPFN   L   +R   +
Sbjct: 63  FEVCRILREDEGNNLMPIIMLTAQDNEDDKLTGLELGADDYITKPFNTRELVSRVRNTLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0205]
          Length = 243

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF+V  A    +      +ELLP+ ++ D  M      
Sbjct: 18  RLLLVDDEPGLRTAVQAYLEDEGFVVTTAVDGEDGWAKA-QELLPDVVISDVMMPRLDGY 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +      I G +AG + ++ KPF+ + L   +  + + 
Sbjct: 77  GLLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARVHNVVKR 136

Query: 121 QK 122
           Q+
Sbjct: 137 QE 138


>gi|317121455|ref|YP_004101458.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591435|gb|ADU50731.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 326

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + K  R      GF V  AT   +A E        + +++D  +  +   
Sbjct: 4   RILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGG-IDLIILDLMLPEIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   + V +  L    +    I G   GA+ +++KPFN   L   +R + +  K
Sbjct: 63  TVC-REVRKTSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRRVK 121


>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
 gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
 gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 243

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
            ++
Sbjct: 129 PQE 131


>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
           [Psychrobacter sp. 1501(2011)]
          Length = 232

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---V 59
           ++L+V+    +R++        GF   +A  V +A         P  +++D  + G    
Sbjct: 5   TILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDH-RPAMILLDWMLPGNQSG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +++  + +++ +  L    + +  + G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 64  IDLCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLR 123

Query: 120 MQKSKDENQFLDA 132
                   + ++A
Sbjct: 124 RSSVLSGEKPIEA 136


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+    A+   +A         P+ +++D  M  +   
Sbjct: 10  RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKA-ASFHPDVVILDVQMPRMDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V +L         ++G RAGA+ ++ KPF+ + +   ++ L +   
Sbjct: 69  ETLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSG 128

Query: 123 SKDENQ 128
              + +
Sbjct: 129 RAQQTR 134


>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
 gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
 gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
           273-4]
 gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 254

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  + G   
Sbjct: 12  QRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQ-MDKLLQRELFSLVVLDLMLPGEDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R      D+ +  L  +      IAG  AGA+ +L KPFN + L   ++ + + Q
Sbjct: 71  ISICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQ 130

Query: 122 KSK 124
             +
Sbjct: 131 NRE 133


>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 230

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+    +  + R  F + GF V  A +  +A +      + + +V+D  + G   L
Sbjct: 5   TVLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPV-DLVVLDLMLPGKDGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + V  L  + D    I G   GA+ +++KPF+   L    + + + 
Sbjct: 64  EVCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRR 123

Query: 121 QKSKDENQFL 130
            K + E + L
Sbjct: 124 GKPQPEEETL 133


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEK-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    +R+V R      GF+V EA    EA +    E   + +++D  +  + 
Sbjct: 1   MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRF-SEHKIDLIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L    +    I G   GA+ +++KPF+   +   ++ + + 
Sbjct: 60  GM-EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRR 118

Query: 121 QKSKDENQ 128
                E +
Sbjct: 119 SSGIPEKE 126


>gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 280

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 40  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 98

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 99  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 158

Query: 120 MQKS 123
            +++
Sbjct: 159 RRRA 162


>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
           pseudintermedius ED99]
          Length = 241

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD  H +RK+ +      G+++ EA+   EA +   K    + +++D  +  +
Sbjct: 2   MTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATK-YDYSCILLDLMLPEM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 V+      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 61  DGLEVAVKLRE-LKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLR 119

Query: 120 MQKSKDENQ 128
             +S    Q
Sbjct: 120 RTESSKAEQ 128


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEED-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TENIE 123


>gi|163785470|ref|ZP_02180068.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879260|gb|EDP73166.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 311

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R + + +    G+   EA +  E  +   +E  P+ +++D  M  +  F
Sbjct: 8   KILIVDDDERNRLLFKVILKKEGYETTEAENGEEGIKKALEEK-PDVILMDVMMPVMDGF 66

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L    + E+ + G  +GAN FL KP + + L   ++   Q+
Sbjct: 67  TATKKLKSDDRTKHIPVIILTALNEREEKLKGIESGANDFLTKPVDTKELLLRIKNHLQI 126

Query: 121 QKSKD 125
           +  +D
Sbjct: 127 KAYQD 131


>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 250

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  + R      G+ V +AT      +    ++LP+ +++D  +  V 
Sbjct: 1   MARILIIEDDPSILDILRINLELAGYEVVKATDGVRG-QALALQVLPDLIILDLMLPQVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L      +  I G  AGA+ +L KPF  + L   +R L 
Sbjct: 60  GLTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L++D    +R++     +  G+ V  A    EA    ++E  PN +V+D  M      
Sbjct: 5   KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREH-PNLVVLDLMMPKLDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 64  GVCQELRKE---SDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120

Query: 121 QKSKDENQFL 130
                 N  L
Sbjct: 121 VDKASSNNNL 130


>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 218

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A    EA +  E E  P+ +V+D  +  +  
Sbjct: 13  KKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESES-PDLIVLDLMLPKIDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +Q+       +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 72  LEVA-KQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 130

Query: 122 KS 123
            +
Sbjct: 131 DA 132


>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 240

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + ++ R+     G+ V  + +  E  E   +E  P+ L++D  +  +   
Sbjct: 4   TVLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEK-PDLLILDLMLPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     ++ +  L    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EICKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRR 122

Query: 121 QKS 123
            + 
Sbjct: 123 TQQ 125


>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 235

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +      G+ V  A    EA      E  P+ +++D+ +    
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDES-PDLVLLDQMLPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R      D  V  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GIEVLRQIRSND---DTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 116

Query: 119 QMQKSKDEN 127
           + QK   +N
Sbjct: 117 RRQKVTVQN 125


>gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032]
          Length = 357

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+ S I +++   L    G+ V  A    EA         P+ +++D  M  +   
Sbjct: 7   SILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRT-FRPDLILLDILMPQMDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++    D    ++G  AG   ++ KPF+   +   +    ++
Sbjct: 66  ELCRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHLKL 125

Query: 121 QKSKDENQ 128
            + + + +
Sbjct: 126 CRLQRQLE 133


>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 218

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 218

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 1382

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L D +  +R+  + L N   + V        A E   +   P+ ++ D  M      
Sbjct: 630 RIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHP-PDLVLTDVMMPQLNGF 687

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
           E +  +R  PL  ++ +  L      E ++    AGA+ +L+KPF+   L   +    + 
Sbjct: 688 ELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELLVRIEANLKM 747

Query: 120 ---MQKSKDENQFLDA 132
               Q++  + Q L A
Sbjct: 748 AQLRQQATQKEQKLRA 763


>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 245

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +R+  +    D GF V  A +  +A +       P  ++ D  M G+   
Sbjct: 17  RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLL-STTQPQLIISDIMMPGMDGY 75

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F+A VR++   + + V +L  +      I G RAG +++L KPF+ E L   +  L + 
Sbjct: 76  QFLAQVRKLDPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 135

Query: 121 QKSKDENQFLD 131
            ++   ++ + 
Sbjct: 136 SRAASPSEVVA 146


>gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 231

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V        G +V       EA      +  P+ LV+D  +  +   
Sbjct: 4   RILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDP-PDLLVLDLMLPKMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V V  L    +    + G   GA+ ++ KPF+   L   ++ + +  +
Sbjct: 63  QVCRKLRERWP-VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRAR 121


>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 224

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R++ R   +  GF V EA+   EA    E E   +  ++D  M  +
Sbjct: 1   MKSKILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENE-YIDLAIVDIMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   V +M    D+ V  L  +      + G   G + ++ KPF+ + L   ++ + +
Sbjct: 60  DGF-QLVEEMKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILK 118

Query: 120 MQKSKDEN 127
                 +N
Sbjct: 119 RYSINSQN 126


>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 229

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 18  MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 77  GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR   R      G+    A    +A E       P+ +V+D  M  +  
Sbjct: 13  QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKA-ASYRPDLIVLDIQMPRMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R       V +  L         + G  AGA+ +L+KPF  + L   +R L +  
Sbjct: 72  LTAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRS 131

Query: 122 KSKDEN 127
               E 
Sbjct: 132 SYAVEQ 137


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R++ R      GF   EA           +    + +++D  M  + 
Sbjct: 1   MATILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGR-KQIDLILLDIMMPKLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F  HVR+    + V + +L    D    + G + GA+ +++KPF+   +   +  + 
Sbjct: 60  GYRFCMHVRER---SQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVL 116

Query: 119 QMQKSKD 125
           +  K  D
Sbjct: 117 RRTKGTD 123


>gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
 gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus MO6-24/O]
          Length = 1129

 Score =  149 bits (379), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 4   LLLV-DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           LL+V D   +  +V        G+ V  A+   +  E  E E  P  L++D  M G+   
Sbjct: 724 LLIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEK-PALLLLDIMMPGMSGY 782

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     ++ +  L      E  + G  AGAN +L KPFN++ L   ++     
Sbjct: 783 QVCHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHLMA 842

Query: 121 QKSKD---ENQFLDA 132
            K++    EN  L+A
Sbjct: 843 SKAEARRLENNRLEA 857


>gi|293370405|ref|ZP_06616959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292634553|gb|EFF53088.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1417

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  ++   + + +   + V  A++  E  +    + LP+ ++ D  M  +   
Sbjct: 1159 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1216

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1217 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1276

Query: 121  QKSKDE---NQFLD 131
            +K+  E   N+ ++
Sbjct: 1277 RKALQELYMNRLME 1290


>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
          Length = 225

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ R   +  GF V  A S  EA      E  P+ +V+D  + G+ 
Sbjct: 1   MTHVLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLV-AERRPDLIVLDWLLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    +  L      E  + G  +GA+ +L+KPF    L   +R L + 
Sbjct: 60  GLAVVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRR 119

Query: 121 QKSKDENQFL 130
            +   + + L
Sbjct: 120 VEPASDEKPL 129


>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  + G    
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQ-MDKLMQRELFSLVVLDLMLPGEDGI 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +D+ +  L  +      IAG  AGA+ +L KPFN + L   ++ + +   
Sbjct: 74  SICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133

Query: 123 SK 124
            +
Sbjct: 134 RE 135


>gi|171911993|ref|ZP_02927463.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 235

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+ D    VR++        G+   EA    +      +   P+ +V+D  M G     
Sbjct: 7   ILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRR-RKPDAIVLDVMMPGRDGFG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + V  L  +   +  IAG   GA+ +L KPF+ + L   ++ L + 
Sbjct: 66  VCQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQALLRR 124


>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++        G+ V EAT+  +A    E  + P+  VID  M  + 
Sbjct: 1   MPKILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEA-VKPDLAVIDVMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                + +R+     D+ +  L  + +    + G   GA+ +++KPF+   L   ++ L 
Sbjct: 60  GWALCSALRESF---DMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALL 116

Query: 119 QMQKSKDEN 127
           +  +     
Sbjct: 117 KRYRIASSQ 125


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKD 125
                
Sbjct: 119 TDLAS 123


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ R      G+ V        A    +K L P+ +++D  M  +   
Sbjct: 5   KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDK-LHPDLVLLDVMMPVMDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      +  +  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  EVCRKIRAKD---NTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRR 120

Query: 121 QKSKDENQ 128
              +++N+
Sbjct: 121 STKEEDNK 128


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++VD    + ++ R      G+ V  A    EA E  EKE  P  +++D  +  +   
Sbjct: 5   KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKED-PELILLDIMLPQLDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L  + +    + G   GA+ +++KPF  + +   ++ + + 
Sbjct: 64  QVCREIRKK---SQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRR 120


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E   +   P+ +V+D  M      
Sbjct: 15  TILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTD-PDLVVLDVMMPKLDGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 74  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130

Query: 121 QK 122
            +
Sbjct: 131 VE 132


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  +      + G+ +  A    +A E       P+ +V+D  +    
Sbjct: 1   MKKILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKF-ASFQPDLVVLDLMLPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+    + V +  L  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCRQIRKD---SQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANI 116

Query: 119 QMQKSKDE 126
           +      E
Sbjct: 117 RRTAVVAE 124


>gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24]
 gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24]
 gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24]
          Length = 280

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V     +  G+ V  A    EA         P+ +V+D  + G+   
Sbjct: 54  RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARA-AGHRPDLVVLDLMLPGMDGL 112

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R    G  V V  L    D +  + G   GA+ ++ KPF+   L   +  + 
Sbjct: 113 EVCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 167


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A S  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGG-IDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 117 RRNQGAVE 124


>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R    +     G  V        A      +  P+ +++D  +  + 
Sbjct: 1   MARILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADP-PDLVILDIMLPTID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    H+R     + V +  L    D    + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFDVCRHIR---RSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALL 116

Query: 119 QMQKSKDEN 127
           + ++  ++ 
Sbjct: 117 RRRELLEQE 125


>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 290

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    V +V      + GF V  A     A    E   +P+ +V+D  + G   
Sbjct: 53  TRVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAET-TVPDLVVLDLMLPGIDG 111

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+      V V  L    +    +AG   GA+ ++ KPF+   L   +R + +
Sbjct: 112 IEVCRRLREQ---RPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLR 168

Query: 120 M 120
            
Sbjct: 169 R 169


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
 gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +  +        G+   EA       +   ++  P+ +++D  + G+  
Sbjct: 3   KTVLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQN-PDLVLLDLMLPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    R    G+ V +  L    +    + G   GA+ ++ KPF    L   ++   + 
Sbjct: 62  FEVCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRR 120


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A++  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGG-IDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 116

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 117 RRNQAAAQ 124


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKD 125
                
Sbjct: 119 TDLAS 123


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKNSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 218

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA    E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H  +  G  + EA +  EA +  E   + + +++D  M  + 
Sbjct: 1   MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKV-DLVIMDIMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      DV +  L  + +  + + G   GA+ +L+KPF+   L   ++ L 
Sbjct: 60  GWELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYR 120


>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 253

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R++     +  G+ V  A    EA    E E  P+ +V+D  M      
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETEN-PDLVVLDVMMPKLNGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L    D    I G   GA+ +L KPF+ + L   ++ + + 
Sbjct: 74  GVCQKIRTQSE---VPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRR 130

Query: 121 QKSKDENQFLDA 132
            +  + N+ + A
Sbjct: 131 LRETNANRDVSA 142


>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 234

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R V +      G+ V  AT+  E  +    E  P+ +V+D  + G+   
Sbjct: 4   TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEE-PDLIVLDLMLPGMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +DVF+  L    D    +AG R GA+ +L KPF+   L   +  + + ++
Sbjct: 63  EITARLREK-SDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRR 121

Query: 123 SK 124
            K
Sbjct: 122 GK 123


>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  149 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +  +     GF V +A     A E   +   P+ +V+D  + G+  F
Sbjct: 5   RILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHP-PDLVVLDLMIPGIDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + V  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  EVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRR 123

Query: 121 QKSKDENQFL 130
             +    + +
Sbjct: 124 SATDATEERI 133


>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 218

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
 gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
          Length = 238

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++     N   +    A     A E    E  PN +++D  + G+   
Sbjct: 5   KILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFV-EFAPNLILLDVMLPGMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  L  + +    + G + GA+ +++KPF+   L   +  L + 
Sbjct: 64  QVCTEIRKQ---SNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRR 120

Query: 121 QKSKDEN 127
             S+ +N
Sbjct: 121 CNSRTDN 127


>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 226

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H  +  G  + EA +  EA +  E   + + +++D  M  + 
Sbjct: 3   MARILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKV-DLVIMDIMMPEMD 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      DV +  L  + +  + + G   GA+ +L+KPF+   L   ++ L 
Sbjct: 62  GWELCRELR---DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALL 118

Query: 119 QMQK 122
           +  +
Sbjct: 119 KRYR 122


>gi|254413625|ref|ZP_05027395.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC
           7420]
 gi|196179732|gb|EDX74726.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC
           7420]
          Length = 379

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    ++ + +   ++ G+ V  A++  E  E   ++L P  ++ D  M  + 
Sbjct: 1   MTQILIIDDDPAIQILLKRTLHNQGYDVTIASNGEEGLELV-QQLRPALVICDWIMPRMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +      L         + G  AGA+ F+ KP     L+  +R   
Sbjct: 60  GLEVCRQIKATPALSTTMFILLTSLGSVGDRVKGLDAGADDFICKPIEIAELQARVRSGL 119

Query: 119 QMQKSKDENQFLDAI 133
           ++ +   + Q    +
Sbjct: 120 RLHELSRDLQHQKQL 134


>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V  A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ +  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
           vulnificus CMCP6]
 gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           vulnificus CMCP6]
          Length = 1129

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 4   LLLV-DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           LL+V D   +  +V        G+ V  A+   +  E  E E  P  L++D  M G+   
Sbjct: 724 LLIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEK-PALLLLDIMMPGMSGY 782

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     ++ +  L      E  + G  AGAN +L KPFN++ L   ++     
Sbjct: 783 QVCHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHLMA 842

Query: 121 QKSKD---ENQFLDA 132
            K++    EN  L+A
Sbjct: 843 SKAEARRLENNRLEA 857


>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    + ++ R+     G+ V    +     E C KE  P+ +++D  +  +   
Sbjct: 4   TILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKC-KETNPDLVLLDLMLPDIDGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  DVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRR 122

Query: 121 QKSKDEN 127
            K++ E+
Sbjct: 123 SKNESED 129


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A S  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGG-IDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRNQ 120


>gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 262

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V        GF V  A     A    + +  P+ +V+D  + G+   
Sbjct: 9   RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQW-PDLVVLDLMLPGMDGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V V  L    D +  I G   GA+ ++ KPF+   L   +  + + 
Sbjct: 68  DVCRALRGKGP---VPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124

Query: 121 QK 122
            +
Sbjct: 125 GR 126


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
 gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
          Length = 242

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V ++     +  G++V  A     A         P+ +V+D  + G+   
Sbjct: 13  RVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHW-PDLVVLDLMLPGMDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 72  EVCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSR 130


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E EL P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQ 121
            Q
Sbjct: 119 RQ 120


>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
 gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
          Length = 233

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+     +++  +     GF V       +     + E  P  +V+D  + G   +
Sbjct: 8   KILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDEN-PALIVLDWMLPGLSGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + +  L    +    +     GA+ +++KP++   L   +R   + 
Sbjct: 67  EVCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRR 126

Query: 121 QKSKDENQFLD 131
               +  + L+
Sbjct: 127 ANPAEVGEMLE 137


>gi|299148439|ref|ZP_07041501.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298513200|gb|EFI37087.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1446

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  ++   + + +   + V  A++  E  +    + LP+ ++ D  M  +   
Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305

Query: 121  QKSKDE---NQFLD 131
            +K+  E   N+ ++
Sbjct: 1306 RKALQELYMNRLME 1319


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A +  EA +  E E  P+  V+D  +  +  F
Sbjct: 9   RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAE-EFQPDLAVLDVMLPDMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L      E  I G   G + ++ KPF+ + +   +R + +   
Sbjct: 68  TVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 123 SKDEN 127
           S D++
Sbjct: 128 SLDDD 132


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E  E    P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFE-NTAPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
            + + 
Sbjct: 126 VEKES 130


>gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 238

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    R      G  V  A +  EA +   ++ +P+ +++D  M  +  
Sbjct: 7   KLVLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRA-RDDMPDVILLDVMMPVMDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R++   + V +  L  + + E  + G   GA+ ++ KPF+   L   +R + +  
Sbjct: 66  F-EALRRLRQFSQVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRRH 124


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118


>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
 gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
           PhoB, OmpR-family [Ralstonia eutropha H16]
          Length = 235

 Score =  149 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGA 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  NFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    + ++ +  F   GF V        A E  +K   PN +++D  + G  
Sbjct: 1   MKKVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDK-YNPNVVILDLMLPGKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    ++V +  L    D    I G   GA+ ++ KPF+ + L    + + 
Sbjct: 60  GYEVCREIRK---TSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVL 116

Query: 119 QMQKS 123
           +  ++
Sbjct: 117 RRTEA 121


>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 226

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R      GF V EA    EA +   +      +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    + V +  L  + D +  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIRQ---YSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
                 +  ++A
Sbjct: 122 SNVLAADDTMEA 133


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 116

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 117 RRNQATAQ 124


>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
 gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +R++        G+   EA SV EA E    E +P+ +++D  + G   
Sbjct: 13  KRILVVEDEQAIREMIGFALRREGYHFIEAGSVAEA-EDAIAEQVPDLMLVDWMLPGTSG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EF+ H ++  L  DV V  L    + +  I G  AGA+ ++ KPF+   L   +R + +
Sbjct: 72  VEFVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLR 131

Query: 120 MQKSKDENQFLD 131
              S D  Q L+
Sbjct: 132 RIGSAD-GQLLE 142


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++        G+    A    +  E   +   P+ +++D  +  +  
Sbjct: 3   QKVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELF-RSFHPDLVLLDIMLPVMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R+        V  L  + + E  + G   GA+ +++KPF  + +   +  + +
Sbjct: 62  WSVLKKIRESDK---TPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLR 118

Query: 120 MQKSKDE 126
              +++E
Sbjct: 119 RFGAEEE 125


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++  + F   G+ V       EA      E  P+ +++D  + G   +
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEAL-LLAAEDTPDLVLLDWMIGGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L    D +  I G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRR 123

Query: 121 QK 122
            +
Sbjct: 124 VR 125


>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 250

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 10/129 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R++        G+ +  A     A EF +       E   + +V+D  +
Sbjct: 20  RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQINGLDICRLLRHQ--GNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQKS 123
           R L + Q+ 
Sbjct: 138 RALLRRQRL 146


>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 240

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVL 60
             +LL++    + ++         + V  A +  E  +    KE   + +++D  +  + 
Sbjct: 3   KQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMD 62

Query: 61  E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R  +      V +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 63  GMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRA 122

Query: 117 LPQMQKSKDE 126
           + +  +  ++
Sbjct: 123 VLRRHEQPNQ 132


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A S  EA E  ++E   + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ      V V  L  +      I G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRSLRQRSK---VPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGDAEE 124


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        G+ VF A    EA      E  P+ +++D  +  +  F
Sbjct: 25  RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEK-PDLVILDVMLPDMDGF 83

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ + +L  + D    + G +AG + ++ KPF  E +   +  + +  K
Sbjct: 84  TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 143

Query: 123 SKDENQFL 130
                Q L
Sbjct: 144 HGSSEQPL 151


>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
          Length = 237

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             + +++    +R++ +      G+ V+ A +  E      ++  P+ +V+D  M     
Sbjct: 3   TRIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLF-QQYQPDLIVLDLMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L    +    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 62  WELCEEIRQH---SNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1358

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D +  +R     L    G+ V        A    +    P+ ++ D  M      
Sbjct: 688 RILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHP-PHLVLTDVMMPRLDGF 746

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++       V V  L      E  + G + GA+ +L+KPF+ + L   +    ++
Sbjct: 747 GLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLEI 806

Query: 121 QKSKDE----NQFLDA 132
            +++ E     + L A
Sbjct: 807 ARARSEAALAQERLHA 822



 Score =  114 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              +LLV+ S  +R        + G  V  A    E  E     L P+  +ID  + G   
Sbjct: 1211 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLA-LRPDVALIDVGLPGIDG 1269

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             E    VR  P G  +++  L      E      RAG +  L KP N + L
Sbjct: 1270 YEVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1320


>gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++   +    GF   EA     A      E  P+ +++D  + G   
Sbjct: 3   RKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMV-EPYPDMVLLDWMLPGGSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +Q      + +  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQIAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIR 121

Query: 120 MQKSKDENQFLD 131
                   + +D
Sbjct: 122 RVSPTSLEEAID 133


>gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
 gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A      +   + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLL--DNSIDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQFLD 131
           +     ++ Q +D
Sbjct: 116 RRSNWSEQQQNVD 128


>gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++ R      G++V EA     A     +E  P+ +V+D  + G+   
Sbjct: 4   KILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRE-RPDLIVLDLMLPGMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + +  L  + +    I G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  DVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRR 122

Query: 121 QK 122
            K
Sbjct: 123 SK 124


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ +      G+ V  A    E     E+ L P+ +V+D  + G+  
Sbjct: 5   TRILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFER-LRPDVVVLDIMLPGMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    V  L         +     GA+ +L KPF  E L   MR + +  
Sbjct: 64  VGVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRRV 123

Query: 122 KSKDENQ 128
           + ++  +
Sbjct: 124 EGEEVLR 130


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  +        G+    A    EA E       P+ +V+D  +    
Sbjct: 1   MKKILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESF-ASYQPDLIVLDLMLPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+    + V +  L  + +    + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREIRK---TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSQ 120


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++ R      GF V +A     A E       P+ +++D  +  +   
Sbjct: 5   TILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARA-WTPDVVILDIMLPVLDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +D ++  L    +    + G   GA+ +L KPF    L   +R L + 
Sbjct: 64  AVCRRLR---TFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRR 120

Query: 121 QKSKD 125
            +  +
Sbjct: 121 PRHTE 125


>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 259

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E       P+ +V+D  M      
Sbjct: 21  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPT-CTPDLVVLDVMMPKLDGY 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R L + 
Sbjct: 80  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 136

Query: 121 QKSKD 125
            + + 
Sbjct: 137 VEKEQ 141


>gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response
           regulator [Arsenophonus nasoniae]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P  +++D  + G   
Sbjct: 8   RRILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLI-EPYPALILLDWMIPGGSG 66

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              IAH+++  L  ++ +  L    + E  + G   GA+ +L KPF+ + L   +  + +
Sbjct: 67  IQLIAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAILR 126

Query: 120 MQKSKDENQFLD 131
              +   +  ++
Sbjct: 127 RVSAMASDNVIE 138


>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
           [Frankia alni ACN14a]
          Length = 358

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     +E  P+ +V+D  +  +   
Sbjct: 20  RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLA-REFRPDAVVLDIMLPDMDGL 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L      E  +AG  AG + ++ KPF+ E L   +R L +   
Sbjct: 79  EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 138

Query: 123 SKDE 126
              E
Sbjct: 139 RTTE 142


>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCLEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA E  E E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVE-EVKPDLILLDIMLPQRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+     R++ R+     G+ V  A +  +A    E E+ P+ +++D  + G   +E
Sbjct: 8   VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVE-EIGPDLILLDWMLPGVSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               V+     TD+ V  L    D    + G   GA+ +++KPF+ + L   +R   +  
Sbjct: 67  ICRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRT 126

Query: 122 KSKDENQFLD 131
           +     Q L 
Sbjct: 127 RPASVGQQLA 136


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E E+ P+ +++D  +     
Sbjct: 4   KKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVE-EIQPDLILLDIMLPNKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQ 121
            Q
Sbjct: 120 RQ 121


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEEN-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TENIE 123


>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 245

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    ++LP+ +++D  +  V 
Sbjct: 2   MPRILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKG-QALAIQMLPDLIMLDLMLPRVD 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L      +  + G  +GA+ +L KPF  E +   +R L 
Sbjct: 61  GFTVCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALL 120

Query: 119 QM 120
           + 
Sbjct: 121 RR 122


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +      G+ V  A    EA +    E  P+ +++D+ +    
Sbjct: 1   MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDEN-PDLVLLDQMLPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R     +DV V  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GIEVLRQIRSK---SDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 116

Query: 119 QMQKSKDE 126
           + +KS  +
Sbjct: 117 RSRKSVSQ 124


>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCMEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEK-PDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKS-----KDENQFLDAI 133
            +      ++E+  L ++
Sbjct: 119 TELVAVDNQEEDTKLQSL 136


>gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A+   +A      +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLI--DNSIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQQQ 125


>gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 240

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    ++++  +     GF V  A    +A     +E  P+ +++D  + G+   
Sbjct: 12  TILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFREN-PDLVLLDLMLPGLDGG 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P    + +  L    D +++ AG   GA+ ++ KPF+ + L   ++   + 
Sbjct: 71  EVCKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRR 130

Query: 121 QK 122
            +
Sbjct: 131 GR 132


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +L+VD   + RKV  +  +   + V E  S  EA  +       + +++D  M  +   E
Sbjct: 1146 ILIVDDEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMSGYE 1205

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +RQ     ++ +  L        ++ G  +GAN F+ KP  +E L   +    Q++
Sbjct: 1206 ACKQLRQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHTHLQLR 1265


>gi|300865288|ref|ZP_07110102.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300336761|emb|CBN55252.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 403

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V      +  F V  A     A E  E  + P+ +++D  M G+  F 
Sbjct: 11  ILIVDDNQTNLDVLFDFLRNCNFKVLVALDGESAIEQLEY-VRPDLILLDVMMPGIDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
             + ++ +P   D+ V ++    D    + G ++GA  ++ KPF  E +   ++      
Sbjct: 70  TCSRLKAIPATKDIPVIFMTALSDTVNKVRGFQSGAVDYITKPFQHEEVLSRIQTHLTIC 129

Query: 120 --MQKSKDENQFLDAI 133
              +K +++N+ L A+
Sbjct: 130 KLQKKLQEKNEQLAAL 145


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    VR V R      GF V  A +  E          P+ +V+D  M G   L
Sbjct: 7   RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHE-PDLVVLDVMMPGINGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+   + V +  L    + E  IAG + GA+ ++ KPF+ + L   +  + + 
Sbjct: 66  EVCKRLRQV---SQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRR 122

Query: 121 QKS 123
            + 
Sbjct: 123 ARM 125


>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R++  +     G+   +A    E  E   +   P+ +++D  +  +   
Sbjct: 7   TILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELA-RSRKPDLILLDLMLPKMDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                + +      + +  L    +    I G   GA+ +++KPFN   L   +R + + 
Sbjct: 66  AVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRR 125

Query: 121 Q 121
           Q
Sbjct: 126 Q 126


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R      G+   EA     A          + +++D  M  + 
Sbjct: 1   MAKILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGY-DLVILDLMMPFMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R   +  +  V  L    +    +AG   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GMSCLREMRTRRI--NTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVL 117

Query: 119 QMQKSKDE 126
                + E
Sbjct: 118 NRTMPRTE 125


>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++     +  G+ V  A+   EA         P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVST-PDLIVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    +    I G   GA+ ++ KPF+ + L   +  + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRR 122


>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 218

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA    EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 256

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R          G+ V  AT   EA    E++  P+ +++D  M  +   
Sbjct: 18  RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERD-RPDLVLLDIMMPRMDGL 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A  R    G  V V  L         + G   GA+ +L KPF  + L   +R L 
Sbjct: 77  TAVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132


>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
 gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 237

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+++    +R+V +       + V+ A +  E  E       P+ +++D  M     
Sbjct: 3   KRILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTH-QPDLIILDLMMPQKNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  L  + +    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  WELCEEIRQK---SNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|329956866|ref|ZP_08297434.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328523623|gb|EGF50715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1474

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R   ++  ++  + V  A +  E  +    + LP+ ++ D  M  +   
Sbjct: 1218 SILVVEDNKELRTFLKNSLSEH-YTVITAANGKEGLQHAI-DDLPDLIISDVMMPVMDGL 1275

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1276 EMVKQIKENSAICHIPIIILSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIITLLRQ 1335

Query: 121  QKSKDEN 127
            +KS  E 
Sbjct: 1336 RKSLQEM 1342


>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   +  +V  +  +   + V +AT+  EA E  E    P+ +++D  M  +   
Sbjct: 730 KILIVDDEPVNIQVLINNLSVLKYEVTQATNGFEALEIIENGFRPDLILLDVMMPRMSGY 789

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ +  L  +     ++ G  +GAN +L KPF++  L   ++   ++
Sbjct: 790 EVCQILREKFPAIELPIVMLTAKNQVTDLVEGFNSGANDYLSKPFSKNELLARIKTHIRL 849

Query: 121 QK 122
            K
Sbjct: 850 AK 851


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|160886917|ref|ZP_02067920.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483]
 gi|156107328|gb|EDO09073.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483]
          Length = 1446

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  ++   + + +   + V  A++  E  +    + LP+ ++ D  M  +   
Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305

Query: 121  QKSKDE---NQFLD 131
            +K+  E   N+ ++
Sbjct: 1306 RKALQELYMNRLME 1319


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVL 116

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 117 RRNQMVAE 124


>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+L+VD    + ++ +      G+  FEA S  +A E   K    + +++D  M    
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEIL-KHNKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLK 126


>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
          Length = 242

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         +         +A    E    P+ +++D  + G+  
Sbjct: 15  QKILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFE-HFRPDLILLDLMLPGMDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 74  YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLR 130

Query: 120 M 120
            
Sbjct: 131 R 131


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  + +      G+ V  A    E  E  E +  P+ +++D  +  +  
Sbjct: 3   NKVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESD-QPDLIILDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R      +  +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVAKRVRAKH-NTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 122 KSKD 125
            + +
Sbjct: 121 DAAN 124


>gi|237721203|ref|ZP_04551684.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448999|gb|EEO54790.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1446

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  ++   + + +   + V  A++  E  +    + LP+ ++ D  M  +   
Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305

Query: 121  QKSKDE---NQFLD 131
            +K+  E   N+ ++
Sbjct: 1306 RKALQELYMNRLME 1319


>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 238

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R++ R      G+ + EA     A +        + +++D  + G+  
Sbjct: 6   NRILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDY-SIILLDVMLPGMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ        V  L  + +    + G   GA+ +++KPF+   + + ++ + +
Sbjct: 65  IEVCTRLRQ---TKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    + ++ +      G+ VF       A +  ++E   + LV+D  +   G 
Sbjct: 4   KKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEED-IDLLVLDLMLPEIGG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R     +D+ +  L  +      I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  LDICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILR 122

Query: 120 MQKSKDE 126
              S  +
Sbjct: 123 RTGSSGQ 129


>gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            + +VD    + ++        GF V +      A +  +    P  +++D  + G+   
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNP-PRLVILDIMLPGIDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+    + V +  L  + D    +     GA+ +++KPF+ + L   ++ + + 
Sbjct: 65  ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121

Query: 121 QKSKDENQF 129
            + + + + 
Sbjct: 122 YEPESDERR 130


>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
 gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
          Length = 232

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    ++++     +  G  V  A    +A      E LP+ +++D  + G   L
Sbjct: 4   TILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAE-LPDLILLDWMLPGTSGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  TLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  +D
Sbjct: 123 RAPQLTDDIID 133


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E+E  P+ +++D  +  + 
Sbjct: 4   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 121

Query: 121 QKSKD 125
            ++ +
Sbjct: 122 TETIE 126


>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
            ++
Sbjct: 129 PQE 131


>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
 gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
 gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
 gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
 gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
 gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
 gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
 gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
 gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
 gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
          Length = 244

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D G++V  A    +  +      + + +V+D  +      
Sbjct: 11  RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQ-MDKLIAREMFSLIVLDLMLPDEDGI 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     + + +  L  +      IAG  AGA+ +L KPFN + L   ++ + + Q 
Sbjct: 70  AICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 129

Query: 123 SK 124
            +
Sbjct: 130 RE 131


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVM 116

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 117 RRNQATAQ 124


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++        GF    A    +  E+  +   P  +++D  +  +  
Sbjct: 3   QKVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYF-RSFQPALVLLDIMLPVMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +   ++++   +   V  L  + + E  + G  +GA+ +++KPF  + +   +  + +  
Sbjct: 62  WTV-LKKIREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRT 120

Query: 122 KSKDENQ 128
             ++E +
Sbjct: 121 GQEEEQE 127


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEK-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|260171744|ref|ZP_05758156.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315920056|ref|ZP_07916296.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313693931|gb|EFS30766.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1446

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  ++   + + +   + V  A++  E  +    + LP+ ++ D  M  +   
Sbjct: 1188 SILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAV-DDLPDLIISDVMMPVMDGL 1245

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1246 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQ 1305

Query: 121  QKSKDE---NQFLD 131
            +K+  E   N+ ++
Sbjct: 1306 RKALQELYMNRLME 1319


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVE-EIKPDIILLDIMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQ 121
            Q
Sbjct: 119 RQ 120


>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
 gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R + R       +   EA     A      +  P+ +++D  + G   
Sbjct: 5   KTILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQK-PSLILLDWMLPGTSG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +++     D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 64  IDLARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 123

Query: 120 MQKSKDENQFLD 131
             +     + ++
Sbjct: 124 RTEGISAAELIE 135


>gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 227

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + ++        GF V +      A +   +E  P  +++D  + G+  
Sbjct: 5   RKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKI-QEKPPKLVILDIMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    + V +  L  + D    +     GA+ +++KPF+ + L   ++ + +
Sbjct: 64  IALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLR 120

Query: 120 MQKSKDENQF 129
             + + E + 
Sbjct: 121 RYEPESEEKQ 130


>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
          Length = 247

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +  +  +  +  G+    A    EA    E E  P+ +V+D  +     
Sbjct: 4   TRILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIE-ESKPDLIVLDWMLPKVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R  P    + +  L    +    + G   GA+ +++KPF+   L   ++ + +
Sbjct: 63  IEVCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLR 122

Query: 120 MQK 122
             +
Sbjct: 123 RAR 125


>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M+ +L+V+    +R++        G+ V E+ +  +A     +E+ P+ +++D  M G  
Sbjct: 1   MNKILIVEDEDALRELIAFNLTKAGYDVIESENANDAL-IFIEEITPDLIILDIMMPGLK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             + +  +++ P  +++ V  +        ++ G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GTQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILL 119

Query: 119 QMQKSKDEN 127
           + ++ K EN
Sbjct: 120 RKKQEKTEN 128


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+VD    +  + +  F   G+ V  A    EA     K+  P+ +++D  + G  
Sbjct: 1   MAKLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEAL-VVVKDERPDLILLDVMLPGRD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    VRQ     DV +  L  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GMDVCRTVRQ---TYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHL 116

Query: 119 QMQKSKDENQ 128
           +  +SK E +
Sbjct: 117 RRNRSKVEEK 126


>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
          Length = 247

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++  +  +  G+ V  A+   EA     KE  PN +V+D  M      
Sbjct: 12  TILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEH-PNLIVLDIMMPKLDGF 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +L+KPF+ + L   ++ + + 
Sbjct: 71  GVCQEIRKE---SDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRR 127


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +  + R      G+ V  AT+  E          P+ +V+D  M  V  F
Sbjct: 4   TILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAE-PDLVVLDVMMPQVDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+ V V  L  + + E  + G   GA+ +L+KPF  E L   +R L + + 
Sbjct: 63  EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122

Query: 123 SKDEN 127
            + +N
Sbjct: 123 EQQDN 127


>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 223

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R++     N  GF V EA++  EA E  E E   +  +ID  M  +
Sbjct: 1   MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENE-YIDLGIIDVMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   V  +    DV V  L  + + +  + G   GA+ +++KPF+   L   +R + +
Sbjct: 60  DGF-ELVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1014

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V   L    G+     TS  EA +    +  P+ +++D  M G+    
Sbjct: 20  ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRV-TQAQPDLILLDLMMPGMDGLE 78

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P   D+ V +L    + + ++     GA  ++ KPF+   L   ++   +++
Sbjct: 79  VCDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELK 138

Query: 122 KSKD 125
           +++D
Sbjct: 139 QTRD 142



 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL + + I ++V + L    G+ V    +  EA     K    + +++D  M  +   
Sbjct: 741 TILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDY-DVVLMDVEMPEMDGL 799

Query: 63  I--AHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               H+R+    ++   +  +              +G N ++ KP   E L+ A++    
Sbjct: 800 TATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQVAAT 859

Query: 120 MQKSKDENQF 129
             +S  +++ 
Sbjct: 860 ALQSTSQDRM 869


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ R      GF V EA    EA      +     +++D  + G+  
Sbjct: 4   TRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAY-ALIILDLMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A +RQ    ++V +  L    D    + G   GA+ +++KPF+   L   ++ + +
Sbjct: 63  RDVCAQIRQH---SNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  149 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    +R++ R       + + EA++  EA E    +   + +++D  M G+   
Sbjct: 6   TLLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEY-DLILLDVMMPGMDGV 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ L + 
Sbjct: 65  EMCQELRKK---KATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRR 121

Query: 121 QKSKD 125
             +  
Sbjct: 122 ASATK 126


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +R + +      GF V E +   EA    + E   + +++D  + GV 
Sbjct: 1   MPKILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHY-DLVLLDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V V  L    D    + G   GA+ +++KPF+   +   ++ + 
Sbjct: 60  GLTICKEIRK---FSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E EL P+ +++D  +     
Sbjct: 4   KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQ 121
            Q
Sbjct: 120 RQ 121


>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V  A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ +  +      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 227

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    +R +   + +  G+   EA +   A      E  P+ +++D    G    
Sbjct: 4   RILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQL-HEPYPDLILLDWMFPGGSGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++H++Q  +   + V  L    + +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  KLLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRR 122

Query: 121 QKSKDENQFLD 131
                 +  L 
Sbjct: 123 VNPTSLDDELS 133


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA +  E +L P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVE-DLNPDMILLDIMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKSKDENQ 128
            Q +    +
Sbjct: 119 RQNTAAPAE 127


>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++RK+        G++  EA    +A      E   + +++D  +     
Sbjct: 4   KRILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPEYDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    +    + G   GA+ ++ KPF+   L   +  + +
Sbjct: 64  FTVCREIRKKSK---VPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLR 120

Query: 120 MQKSKDENQFLD 131
              S+D+ + L 
Sbjct: 121 RANSEDKGKELK 132


>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +  + +      G+ V  A    EA +    E  P+ +++D+ +    
Sbjct: 1   MSKVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDEN-PDLVLLDQMLPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R     +DV V  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GIEVLRQIRSK---SDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANL 116

Query: 119 QMQKSKDE 126
           + +KS  +
Sbjct: 117 RSRKSVSQ 124


>gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +     +   +   P+ +++D  M G   
Sbjct: 4   KRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTL-QHTTPDLIILDIMMPGEDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    RQ+   + + +  L    +    +AG   GA+ ++ K F+   L   ++ + +  
Sbjct: 63  FCLC-RQLRQDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRS 121

Query: 122 KSKDENQF 129
           +  ++ Q 
Sbjct: 122 QPDNQIQL 129


>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 244

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+  HI+R++ +    + G+ V EA +  EA    E+  + + +++D  M  +  
Sbjct: 20  KTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEV-HLVILDIMMPELDG 78

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +++ V  L    D +  + G   GA+ ++ KPF+   L    + L +
Sbjct: 79  WSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLE 135

Query: 120 MQKSKDEN 127
            + + +E 
Sbjct: 136 SRYAIEEE 143


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+     R+V  +     GF V +A +  EA     +E  P+ +V+D  +     +E
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEAL-MLVEETGPDVIVLDWMLPSVSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    V +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 68  VCRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRA 127

Query: 122 K 122
           +
Sbjct: 128 R 128


>gi|329576541|gb|EGG58048.1| putative transcriptional regulatory protein WalR [Enterococcus
           faecalis TX1467]
          Length = 159

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ ++     G+ VF A    EA E  E E+ P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVE-EVEPDLIILDLMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-REVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118


>gi|302342093|ref|YP_003806622.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfarculus baarsii DSM 2075]
 gi|301638706|gb|ADK84028.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfarculus baarsii DSM 2075]
          Length = 518

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   I  ++   LF+  G     A+    A E   +E +P+ +++D  M G+   
Sbjct: 13  RILIVDDEPINIEIMSELFSLHGAETISASDGATALELARRE-MPDLVLLDVMMPGMNGY 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++   +   + V  +      +  I G  AGA+ FL KP +   L    R L ++
Sbjct: 72  EVCRRLKADEVTRRLPVVMVTGLGQIDDKIKGLEAGADDFLSKPVHMAELVTRTRSLLRV 131

Query: 121 QKSKDENQ 128
           ++  D+ +
Sbjct: 132 KELNDDLE 139


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 231

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +R++        G+ + EA     A +   ++  P  +++D  + G  
Sbjct: 1   MTKILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKLVEK--PQLILLDWMLPGRS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++FI  +++     ++ V  L    + E  I G   GA+ ++ KPF+ + L   +  + 
Sbjct: 59  GIQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAML 118

Query: 119 QMQKSKDEN 127
           +    + +N
Sbjct: 119 RRVYEQSQN 127


>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
           DJ]
 gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
           DJ]
          Length = 229

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQA-HAIIVDRRPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L T + +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E    E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKA-TEEQPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
 gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    +R++        G+ V +A +        ++  +P+ +++D  + G   +
Sbjct: 4   KVLILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGASGV 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++     DV V  L    + +  + G  AGA+ +++KPF+   L   ++ + + 
Sbjct: 64  ELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRR 123


>gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 227

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            + +VD    + ++        GF V +      A +  +    P  +++D  + G+   
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNP-PRLVILDIMLPGIDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+    + V +  L  + D    +     GA+ +++KPF+ + L   ++ + + 
Sbjct: 65  ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121

Query: 121 QKSKDENQF 129
            + + + + 
Sbjct: 122 YEPESDERR 130


>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 236

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + K+ +      GF  +       A +  + +  P+ +++D  + G+    
Sbjct: 3   ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQ-QPDVIILDLMLPGLDGLE 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A +RQ P   D ++  L  + +    + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 62  VCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120


>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 236

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEK-PDLVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 218

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A    EA +  E E  P+ +V+D  +  +  
Sbjct: 3   KKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESES-PDLIVLDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +Q+       +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVA-KQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 122 KS 123
            +
Sbjct: 121 DA 122


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A     A E   K+  P+ +++D  +  +   
Sbjct: 5   KILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMV-KDAPPDLILLDIMLPQMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + +  L  + +    I G   GA+ ++ KPF+   +   ++   + 
Sbjct: 64  EVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRA 123

Query: 121 QKSKDENQFL 130
            +     + +
Sbjct: 124 LRILKAEKAM 133


>gi|330938965|gb|EGH42452.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330975743|gb|EGH75809.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|302186956|ref|ZP_07263629.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 3   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + R    D G+ V  A S        E++   + LV+D  + GV  
Sbjct: 4   KRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   V +  +       + I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRA 123

Query: 122 KSKDENQFLDA 132
           ++  ++  +DA
Sbjct: 124 EAMAQSARIDA 134


>gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVTINLEMAGYDVSQAMDGIKG-QALALQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|238063933|ref|ZP_04608642.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237885744|gb|EEP74572.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 318

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    + +         GF V  A+   EA E  E++  P+  V+D  M     LE
Sbjct: 11  ILVVDDDADIARFVEFNLRLHGFEVIHASDGQEALEVIERQ-RPDLAVVDLMMPRIDGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P+ + + V  L  +      + G  AGA+ +L+KPF+   L   +    +  
Sbjct: 70  LTRRLRANPMTSALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRRN 129

Query: 122 KSKDE 126
           K   E
Sbjct: 130 KEFRE 134


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  E E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAE-EIKPDLVLLDIMLPNRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREIRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RHQ 121


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + +V +      G+ V  A     A E    E  P+ +++D  +  +   
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYEVQVANDGKSA-ETTFLEYKPDLVILDIMLPNIDGI 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V  L  + +    + G   GA+ +++KPF  + +   ++ + + 
Sbjct: 66  DVLKWIRKDYE---TPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRR 122

Query: 121 QKSKDENQ 128
               +EN+
Sbjct: 123 YSVDNENK 130


>gi|17231412|ref|NP_487960.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133054|dbj|BAB75619.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 414

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R     L    G+ V EA S   A +   ++  P+ +++D  M  +  F
Sbjct: 95  KVLVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQ-QPDLILLDVMMPEMDGF 153

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V ++    D    I G   GA+ FL KPF+R  L   ++ L Q 
Sbjct: 154 EVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLVQQ 213

Query: 121 QKSKDEN 127
           ++  ++ 
Sbjct: 214 KRLNEDL 220


>gi|296133006|ref|YP_003640253.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola sp. JR]
 gi|296031584|gb|ADG82352.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola potens JR]
          Length = 314

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    + ++ +      GF+V+ A     A E    ++ P+ +++D  +  +  
Sbjct: 7   QRILVIDDDKFMVRIIKDCLEKVGFIVYGAEDFSSAMELIY-QMTPDLILLDVVLPKMNG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     + V +  +  +   E  +AG  AGA+ ++ KPF+   L   ++   +
Sbjct: 66  FEICRLLRNDTRTSHVPIIMITSKAMTEDKVAGLEAGADDYITKPFDPLELVARVKTHLR 125

Query: 120 MQKSKD 125
             K + 
Sbjct: 126 RAKQEK 131


>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 251

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ R       + + EA +  EA      E   + +++D  M G   
Sbjct: 18  TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 76

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 77  IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 133

Query: 120 M 120
            
Sbjct: 134 R 134


>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
 gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
          Length = 232

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++     +  G  V  A    +A+     E LP+ +++D  + G    
Sbjct: 4   TILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAE-LPDLILLDWMLPGTSGL 62

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  +D
Sbjct: 123 RAPQLTDDVID 133


>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLVD    +  + +      G+ V  A    E     +++  P+ ++ D  M  +   
Sbjct: 12  TILLVDDDPNLVLLVKDYLEMQGYRVLTAAHGNEGLAMLQQQT-PDLVICDVMMPQMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F++ VRQ    + + V +L  +      I G + G + +L+KPF  E L   ++ L + 
Sbjct: 71  SFVSAVRQQTHLSWLPVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALLKQ 130

Query: 121 QKSKDENQFLDAI 133
                E Q   A+
Sbjct: 131 TARLREAQGRQAL 143


>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 238

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++ +      G+ + EA     A          + +++D  + G+   
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMA-AGKDYDLIMLDVMLPGIDGV 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +RQ+       V  L  + +    + G  AGA+ +++KPF+   + + ++ + + 
Sbjct: 66  EVCSRLRQV---KATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRR 122

Query: 121 QKSKD 125
             +  
Sbjct: 123 SSATA 127


>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 227

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+  HI+R++ +    + G+ V EA +  EA    E+  + + +++D  M  +  
Sbjct: 3   KTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEV-HLVILDIMMPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +++ V  L    D +  + G   GA+ ++ KPF+   L    + L +
Sbjct: 62  WSVCRRIRK---TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            + + +E 
Sbjct: 119 SRYAIEEE 126


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD   ++ K  R      G+ V  A    EA +   KE   + +++D  +     
Sbjct: 3   RRVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLA-KENAYDIILLDVMLPKYDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    +DV +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQQIRE---YSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
               +D+NQ
Sbjct: 119 RVSKRDKNQ 127


>gi|186683295|ref|YP_001866491.1| response regulator receiver protein [Nostoc punctiforme PCC 73102]
 gi|186465747|gb|ACC81548.1| response regulator receiver protein [Nostoc punctiforme PCC 73102]
          Length = 125

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    + +   +     G+ V  A     A +   K+ +P+ +++D  +    
Sbjct: 1   MPHVLLVDDEAALCESLTYTLQKEGYTVTTAADGHSAIKQFHKQ-VPDVILLDLMLPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R     ++V +  L  + +    I G  AGA+ ++ KPFN   L   ++ + 
Sbjct: 60  GMEVCWRIRA---FSNVPIVMLTAKDEDIDKIWGLEAGADDYITKPFNTRELLARIKAVL 116

Query: 119 QMQKSKD 125
           + +  + 
Sbjct: 117 RRRSGEQ 123


>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIV-DRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|330950929|gb|EGH51189.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 245

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 246

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 2   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 61  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVL 117

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 118 RRNQMVAE 125


>gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 232

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A+   +A      +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLL--DNTVDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQF 129
           +     ++ Q 
Sbjct: 116 RRSNWSEQQQQ 126


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         +A +       P+ +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDF-ASFQPDLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + +    + G   GA+ +++KPF+ + L   +R + +
Sbjct: 64  YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLR 120

Query: 120 MQKSKD 125
             K + 
Sbjct: 121 RFKVRQ 126


>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++        GF    A     A      E  P+ +V+D  +  +  
Sbjct: 3   QRILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSE-RPDLMVLDLMLPDIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R  P    + +  L   VD    I G   GA+ ++ KPFN   +   +R + +
Sbjct: 62  ADLTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
           sensing [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++  +     GF V  A +  +      +E   + +++D  + G+  F
Sbjct: 7   RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEE-IDLVILDVMLPGIDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +   +++ V  L    +    + G   GA+ ++ KPF+   L   ++ + +  +
Sbjct: 66  -EVLRALRRHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRAR 124

Query: 123 SKDENQFLDAI 133
              E Q  D +
Sbjct: 125 RSAEPQDQDTL 135


>gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V  A    E +        P+ +++D  M G   
Sbjct: 5   KKVLVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGE-PDLILLDVMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +DV +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQHIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLR 120

Query: 120 MQKSKDENQ 128
             K  +  Q
Sbjct: 121 RVKPTETQQ 129


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +  +     G+ V  A    EA E    E  P+ +V+D  +  +  
Sbjct: 3   KKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASE-QPDLIVLDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRIQKMMF--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RAQQSQ 125


>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 243

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGK-ALNRILLRDTVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 69  SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127


>gi|75907998|ref|YP_322294.1| metal dependent phosphohydrolase, HD region with response regulator
           receiver modulation [Anabaena variabilis ATCC 29413]
 gi|75701723|gb|ABA21399.1| Metal dependent phosphohydrolase, HD region with Response Regulator
           Receiver modulation [Anabaena variabilis ATCC 29413]
          Length = 414

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R     L    G+ V EA S   A +   ++  P+ +++D  M  +  F
Sbjct: 95  KILVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQ-QPDLILLDVMMPEMDGF 153

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V ++    D    I G   GA+ FL KPF+R  L   ++ L Q 
Sbjct: 154 EVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLVQQ 213

Query: 121 QKSKDEN 127
           ++  ++ 
Sbjct: 214 KRLNEDL 220


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   +++++      + G+ V  A     A E+ +       E+  + +++D  +
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQINGLDICRLLRHQ--GNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQKSKDENQF 129
           R L + Q+  +  Q 
Sbjct: 138 RALLRRQRLSNLPQL 152


>gi|66044362|ref|YP_234203.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255069|gb|AAY36165.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 245

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     +   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4]
 gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4]
          Length = 1298

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+V+ +   R           + V EA +  +  E   K   P+ ++ D  M  +   
Sbjct: 1052 KVLVVEDNAEFRMFIMGEL-MEKYHVIEAANGKDGLEKALKH-QPDLIITDVMMPEMSGT 1109

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++    + + V  L  +   +  I G  AGA++++ KPFN + L   +  L + 
Sbjct: 1110 ELCRLLKKNIQTSHIPVILLTAKTSDKAQIEGFEAGADAYISKPFNMDILLLRIHHLIEQ 1169

Query: 121  QKSKDEN 127
            Q  + E 
Sbjct: 1170 QNQRKEQ 1176


>gi|119486072|ref|ZP_01620134.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456847|gb|EAW37975.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 582

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    V++  + +     F V  A       E       P+ ++ D  M  + 
Sbjct: 1   MIKILVIEDDKQVQENIQVILELEDFDVIVARDGQSGLEKAIASS-PDLILCDIMMPQMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  ++ ++ +   +++   +L  + D + +  G   GA+ +L KPF  + L  A++   
Sbjct: 60  GFEVLSALQSIEATSNIPFIFLTAKSDRDDLRQGMELGADDYLTKPFTPKELLKAIQIRL 119

Query: 119 QMQKSKDE 126
             ++   +
Sbjct: 120 DKKEKYQQ 127


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    + ++        G+ V +A    +  +    +L+P+ +++D  +  V
Sbjct: 1   MKPRILVIDDDPAIAELVAINLEMAGYDVSQAADGVKG-QALAVQLMPDLIMLDLMLPRV 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+    + + +  L      +  + G  AGA+ +L KPF  E +   +R L
Sbjct: 60  DGFTVCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRAL 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E    E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKA-SEEQPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 246

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP--NYLVIDESMEG 58
           M  +LLVD    +           G  V  A     A E  +K   P  + LV+D  + G
Sbjct: 1   MARILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPG 60

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        VRQ+       + +L  +   +  + G  AGA+ +L+KPF    L   +R 
Sbjct: 61  LSGLSLCQQVRQVD--RATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRA 118

Query: 117 LPQM 120
           L + 
Sbjct: 119 LLRR 122


>gi|297569043|ref|YP_003690387.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924958|gb|ADH85768.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfurivibrio alkaliphilus AHT2]
          Length = 461

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD       +   L  D G+  F A S  E  E   +    + ++ D  M G+ 
Sbjct: 1   MKTILVVDDEPNYLVILSELLRDEGYETFTAGSAEEGLEIA-RHTDLDLIITDMRMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     +   + V  +    + +K +A  RAGA ++L KPF+ + L  ++R+  + 
Sbjct: 60  GLELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFDNDELLVSIRKALEH 119

Query: 121 QKSKDENQFLDA 132
            +   EN  L A
Sbjct: 120 YEVVRENTRLRA 131


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD    +R+V +       + V EA +  +A E    E +PN +++D +M G+  L
Sbjct: 5   KILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHE-MPNLVLLDMNMPGMGGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    GTD+ V  L +    +  +A   AGA+ ++ KPF  E L   +R   + 
Sbjct: 64  ETCRAIRS---GTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRR 120


>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 227

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + ++ +      G+    A+   EA     +  +P+ +++D  + G+  F
Sbjct: 5   TILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRH-MPDLILLDLMLPGMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + +  L    +    I G   GA+ +++KPF+   +   +R + + 
Sbjct: 64  EVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRR 123

Query: 121 QKSKDENQF 129
            K +++ + 
Sbjct: 124 NKGEEDVRQ 132


>gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
 gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
          Length = 244

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      + LP+ +++D  + G   
Sbjct: 18  RRILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 76

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++     DV V  L    + E  + G   GA+ +L+KPF+ + L   ++ + +
Sbjct: 77  IQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILR 136

Query: 120 M 120
            
Sbjct: 137 R 137


>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119

Query: 120 MQKSKD 125
             + + 
Sbjct: 120 RSEIRA 125


>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  +      D G+ +  A          E+    + L++D  + G+ 
Sbjct: 4   MKRILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGW-DALILDLMLPGID 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   +     +  +         + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 63  GLDICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRR 122

Query: 121 QKSKDENQFLDA 132
           Q++   N  +DA
Sbjct: 123 QEAMSRNLQMDA 134


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +  +  +   + G+ +  A    EA E  EKE  P+ +++D  +    
Sbjct: 1   MHKILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKEN-PDLVLLDLMLPKKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+      V +  L  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCREIRKDSA---VPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V+ A    EA    E E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVE-EVRPDLILLDIMLPQRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDEN 127
             + K  +
Sbjct: 119 RHQQKAAD 126


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  +  
Sbjct: 9   KKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEK-PDLIILDLMLPKIDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 68  LEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 126

Query: 122 KS 123
            +
Sbjct: 127 AA 128


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   I  +V  +      + V +A S  EA    E     + +++D  M  +   E
Sbjct: 724 VLVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDVMMPNMSGYE 783

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R+      + V  L  +     ++ G + GAN +L KPF ++ L   ++   ++ 
Sbjct: 784 VCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHIKLS 843

Query: 122 KSKDENQF 129
           K     + 
Sbjct: 844 KITKAYER 851


>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++     +  G  V  A    +A+     E LP+ +++D  + G    
Sbjct: 4   TILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAE-LPDLILLDWMLPGTSGL 62

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  +D
Sbjct: 123 RAPQLTDDVID 133


>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         +A    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDS-YQPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         +  L  + +    + G   GA+ +++KPF+ + +   +R + +
Sbjct: 64  YQVCREIRSKAA---TPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLR 120

Query: 120 MQKSKDEN 127
             +   +N
Sbjct: 121 RYQVGQQN 128


>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
 gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
          Length = 228

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V  A    EA      E  P+ +V+D  +     +
Sbjct: 6   TVLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEAL-MLVDEAAPDIIVLDWMLPSVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       V +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 65  EVCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRR 124

Query: 121 QKSKDENQFLD 131
            +     + L+
Sbjct: 125 TRPSTVGERLE 135


>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
 gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++     +  G  V  A    +A+     E LP+ +++D  + G   +
Sbjct: 4   TILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAE-LPDLVLLDWMLPGKTGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F   +R       V V  L    + +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  QFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +  + +      G+ V  A       +  + +   + +++D  +  +  
Sbjct: 3   QRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQT-FDLIILDLMLPEMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   +R + +
Sbjct: 62  LDVCKQLRQSKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILR 119

Query: 120 MQKSKDEN 127
                  N
Sbjct: 120 RVGHAQNN 127


>gi|257487351|ref|ZP_05641392.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626864|ref|ZP_06459818.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649144|ref|ZP_06480487.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|320322868|gb|EFW78959.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329823|gb|EFW85811.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330867867|gb|EGH02576.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330874323|gb|EGH08472.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330988064|gb|EGH86167.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009049|gb|EGH89105.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 245

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       +       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +         EA      E  PN +++D  + G+  
Sbjct: 5   QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFP-EFKPNLVLLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G+ V V  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCRELRS---GSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RYQA 124


>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 248

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA +       P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLF-HNCEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSK 124
            + +
Sbjct: 126 VEKE 129


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +  +     G+ V  A    EA E    E  P+ +V+D  +  +  
Sbjct: 3   KKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASE-QPDLIVLDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRIQKMMF--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RAQQSQ 125


>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++        G+    A       +  +++ +P+ +++D  + G++
Sbjct: 1   MQTVLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQ-VPDLILLDLMLPGMM 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++      + V  L    +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GTEVCKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +  + R      G+ V  A +  E          P+ +V+D  M  V  F
Sbjct: 4   TILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAE-PDVVVLDVMMPQVDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+ V V  L  + + E  + G   GA+ +L+KPF  E L   +R L + + 
Sbjct: 63  EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122

Query: 123 SKDEN 127
            + +N
Sbjct: 123 EQQDN 127


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+  +      G+ V  A+    A E  E+E     +++D  M  +   
Sbjct: 8   RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPY-ELVLLDVMMPRLDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R    G  V V  L         ++G  AGA+ +L+KPF  + L   +R L +   
Sbjct: 67  TACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSA 126

Query: 123 SKD 125
              
Sbjct: 127 LTA 129


>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 229

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L VD    + K+ +H     GF V  A+S  EA +   ++  P+ +++D  M G+  
Sbjct: 3   QRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKA-RQSSPDLVILDLMMPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F  + + +    +V +  L    +    + G R G + +  KPF+   L   ++ + + 
Sbjct: 62  FETYQK-LKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR 119


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +  +      F V  AT+  +A    E     + +++D  +  + 
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHY-DIVLLDLMLPEMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R      D  V  L  +      + G   GA+ ++ KPF+   +   +  + 
Sbjct: 60  GEEVLKRIRMDRN--DTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVL 117

Query: 119 QMQKSKD 125
           +  +  +
Sbjct: 118 RRYEKSE 124


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    +R+V        G  V EA+    A     ++  P+ +V+D  +    
Sbjct: 1   MANILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQP-PDLVVLDLMLPKVT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++         V  L  + +    I G   GA+ +++KPF+   L   +  + 
Sbjct: 60  GLEVCRRLQSD---RRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V+ A    EA +  E E++P+ +++D  +  V  
Sbjct: 3   KKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVE-EVVPDLILLDLMLPKVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                RQ+    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVA-RQVRKSHDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 122 KSKDE 126
            S  +
Sbjct: 121 GSTSQ 125


>gi|239942395|ref|ZP_04694332.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 207

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR+  R      G+    A    +A    E    P+ +V+D  M  +  
Sbjct: 9   QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEA-YAPDLIVLDIQMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R    G+   +  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 68  LTAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126


>gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51]
 gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    +R++   L  + GF   EA    EA E    E  P+  VID  M  + 
Sbjct: 1   MSKIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKI-SEANPSLAVIDLMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ     D+ V  L  + +    + G  AG + +L KPF+ + L   ++ L 
Sbjct: 60  GYELCRQLRQ--YYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALL 117

Query: 119 QMQKSKDEN 127
           +  + +   
Sbjct: 118 RRYRIEASQ 126


>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  I G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|186681683|ref|YP_001864879.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464135|gb|ACC79936.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 475

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    +V      D G+ +  A +   A    E    P+ +++D  M G+  F 
Sbjct: 11  ILIVDDNPNNLEVLSETLMDTGWEILIAVNGEGAIAQAEYAC-PDIILLDVMMPGIDGFT 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+  D+ + ++    +    + G   GA  ++ KPF  E +   ++   Q++
Sbjct: 70  ACQRLKSNPVTCDIPIIFMTALSETVDKVKGLSLGAVDYITKPFEHEEVLARIKTHLQIR 129

Query: 122 KSKDENQ 128
               + Q
Sbjct: 130 NLTKQLQ 136


>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 236

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    +A +  E E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVE-EIKPDLILLDIMLPQRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  IEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    +R++   L  + GF   EA    EA E    E  P+  VID  M  + 
Sbjct: 1   MSKIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKI-SEANPSLAVIDLMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ     D+ V  L  + +    + G  AG + +L KPF+ + L   ++ L 
Sbjct: 60  GYELCRQLRQ--GYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALM 117

Query: 119 QMQKSKDEN 127
           +  + +   
Sbjct: 118 RRYRIEASQ 126


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         +A +       P+ +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNT-FHPDLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + +    + G   GA+ +++KPF+ + L   +R + +
Sbjct: 64  YQVCREIR---HNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLR 120

Query: 120 MQKSKD 125
             K + 
Sbjct: 121 RFKVRQ 126


>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
           SIP3-4]
 gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
           MP688]
 gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. MP688]
          Length = 228

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+V+    ++++        G     A SV +A +   +E LP+ +++D  + G+  +
Sbjct: 4   NILIVEDEPAIQELLALNLTQAGHNPIRALSVEQA-QMLIREALPDLIILDWMLPGMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   ++       + +  L    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
 gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
          Length = 260

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      + LP+ +++D  + G   
Sbjct: 34  RRILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 92

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++     D+ V  L    + E  + G   GA+ +L+KPF+ + L   ++ + +
Sbjct: 93  IQVIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILR 152

Query: 120 M 120
            
Sbjct: 153 R 153


>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 238

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ +       +++ EA +  EA     +    + +++D  M  +  
Sbjct: 5   TKILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEY-DVILLDLMMPKMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ L +
Sbjct: 64  VEVCTELRK---TKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLR 120

Query: 120 MQKSKD 125
              S  
Sbjct: 121 RSGSTK 126


>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 236

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A +  EA     KE  P+ +V+D  M  +  
Sbjct: 3   RKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEK-PDLIVLDWMMPEMSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +R++   + + +  L  + +    + G   G + +++KPF+   L   ++ + +  
Sbjct: 62  -IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRL 120

Query: 122 KSKDENQFL 130
           ++K  N+ +
Sbjct: 121 EAKTINEEI 129


>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+L+VD    + ++ +      G+  FEA S  +A E   K    + +++D  M    
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEIL-KNNKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLK 126


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ R      GF V EA    EA      +     +++D  + G+  
Sbjct: 4   TRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAY-ALIILDLMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A +RQ    ++V +  L    D    + G   GA+ +++KPF+   L   ++ + +
Sbjct: 63  RDVCAQIRQH---SNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1116

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD      +V  +  +   + + +A+S  EA E       P+ +++D  M  +   E
Sbjct: 712 ILIVDDEPTNLQVIVNHLSLQNYAITQASSALEALELIRLGFKPDLILLDIMMPQMTGYE 771

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+  L  ++ +  L  +     ++ G   GAN +L KP  +  L   ++   ++ 
Sbjct: 772 LCKKLREQFLPNELPIVLLTAKNQISDLVEGFAVGANDYLTKPVLKNELLARIKTHLRLA 831

Query: 122 K 122
           K
Sbjct: 832 K 832


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E    E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKA-TEEQPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+ D +  +R+    L +  G+ V        A +       P+ ++ D  M G   L
Sbjct: 637 RLLVADDNADMREYLARLLHSAGYQVDTVKDGLAALQAVRAH-APDLVISDVMMPGLDGL 695

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R  P    V V  L      E  I G +AGA+ +L+KPF    L   +R   ++
Sbjct: 696 GLVAALRADPRTASVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVEL 755

Query: 121 QKSKDENQF 129
            + ++    
Sbjct: 756 ARLRNHQAR 764


>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +RK+         F V EA     A +  E +  P+ +V+D  +  +  F
Sbjct: 5   KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAE-DKNPSLVVLDVMLPDMDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      D+ +  L         I G   GA+ +++KPFN   L   +R + + 
Sbjct: 64  EICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRR 121


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   ++R           + V        A E  +K    + +++D  +  +  
Sbjct: 6   KRILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHS-FDLVILDLMLPKLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++V +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 65  ERVCRAIR---DVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFR 121

Query: 120 MQKSKDENQ 128
               + E Q
Sbjct: 122 RAHKESEPQ 130


>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
 gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA      E  P+ +++D+ +  + 
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEK-PDLVLLDQMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+   ++  V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GV-EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118

Query: 121 QKSKDE 126
           +K+  +
Sbjct: 119 RKAVSQ 124


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA E  EKE  P+ +V+D  +     
Sbjct: 3   KKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKEN-PDLIVLDVMLPKVDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +RQ  +   V +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|300864888|ref|ZP_07109734.1| response regulator receiver domain-containing protein [Oscillatoria
           sp. PCC 6506]
 gi|300337112|emb|CBN54884.1| response regulator receiver domain-containing protein [Oscillatoria
           sp. PCC 6506]
          Length = 128

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    +R    +     G+ V  A     A +   K+ +P+ +++D  +    
Sbjct: 1   MPQILLVDDEPALRDSLTYTLQKEGYEVMTAADGLSAIKQFHKQ-VPDVILLDLMLPEVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R     ++V +  L  +      + G  AGA+ ++ KPFN   L   ++ + 
Sbjct: 60  GMEVCWRIRA---FSNVPIVMLTAKDQDIDKVWGLEAGADDYVTKPFNTRELVARIKAVL 116

Query: 119 QMQKSKD 125
           + + ++ 
Sbjct: 117 RRRSAEQ 123


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLV+     R+V  +     G+ V  A +  EA      E LP+ +++D  M     +E
Sbjct: 8   ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAM-LLVAEALPDLVILDWMMPLLSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRI 126

Query: 122 K 122
           +
Sbjct: 127 R 127


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E      +P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFP-NCMPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
            + + 
Sbjct: 126 VEKEA 130


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|167629886|ref|YP_001680385.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592626|gb|ABZ84374.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 277

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  + + D    + ++ R      GF     T+  +       + +P+ +++D  M G  
Sbjct: 1   MTRIFIADDEPPILELIRRYLEKEGFEAVTFTNGDD-LLAAYAQQVPDLVILDIMMPGTN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    +R+    +DV +  +  + D    I G   G + +L KPF+   L   ++ + 
Sbjct: 60  GLDVCKRLRRD---SDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 254

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R V        G+ V  A     A    E+   P+ +++D  M G+    
Sbjct: 16  VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERG-RPDLVLLDVLMPGMDGLT 74

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A  R       + V  L         +AG  AGA+ +L KPF  + L   +R L +    
Sbjct: 75  ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134

Query: 124 KDE 126
             E
Sbjct: 135 TGE 137


>gi|75908368|ref|YP_322664.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75702093|gb|ABA21769.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 407

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD      KV   + N  GF V  A +   A     +E LPN +++D  M G+  
Sbjct: 7   NSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKV-QETLPNLILLDVMMPGMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H++  P   D+ V ++    D    + G + GA  ++ KP   E +   +    +
Sbjct: 66  FETCRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLE 125

Query: 120 MQKSK---DENQFLDAI 133
           +++++    + + + ++
Sbjct: 126 LRRTQLKLAQEEKMSSL 142


>gi|29349532|ref|NP_813035.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341441|gb|AAO79229.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1450

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  ++   +++ +   + V  A++  E  +      +P+ ++ D  M  +   
Sbjct: 1192 TILVVEDNEELKAFLKNILS-ENYTVITASNGKEGLQHAVDN-IPDLIISDVMMPVMDGL 1249

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1250 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309

Query: 121  QKSKDE 126
            +KS  E
Sbjct: 1310 RKSLQE 1315


>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +RK+        GF V EA +  EA +    +   + +++D  M  + 
Sbjct: 4   MK-ILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPELD 62

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V V  L    D    + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GWSVCRQIRKSSR---VPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALL 119

Query: 119 QMQKSKD 125
           +   + +
Sbjct: 120 RRSGNAE 126


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEK-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TETIE 123


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 18  MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 77  GLEVA-KSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKD 125
                
Sbjct: 119 TDLAS 123


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            L++VD    +R++        GF V  A     A +   ++L P+ +V+D  +  +  F
Sbjct: 8   RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLV-RDLEPDLVVLDVMLPDMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V +L  + D +  + G   G + ++ KPF+ E +   +R + + 
Sbjct: 67  TVTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRR 124


>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +RK+        G+ V EA     A +   K+     +++D  M      
Sbjct: 5   KVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      + +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  GVCREIRKDSK---IPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
             +   +  L A
Sbjct: 122 TSAIGSDDILSA 133


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +     ++  + GF V  A +   A E  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  L  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQIRAK---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + Q + DE
Sbjct: 117 RRQAASDE 124


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 176

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 177 EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233


>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 248

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A+   EA E   ++  P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAF-RQSSPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QK 122
            +
Sbjct: 126 VE 127


>gi|298485851|ref|ZP_07003928.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159629|gb|EFI00673.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 245

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       +       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPHEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|255616226|ref|XP_002539738.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223502939|gb|EEF22645.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 185

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+V+    ++++        G     ATSV  A +   +E +P+ +++D  + G+  +
Sbjct: 5   NILVVEDEPAIQELLALNIKQAGHHAIRATSVEHA-QMLLRETMPDLILLDWMLPGMSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   ++   L  +V +  L    D    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  EFARRLKSDSLTKEVPIIMLTARGDEFDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 123

Query: 121 QKSK 124
           +  +
Sbjct: 124 RAPQ 127


>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
 gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 243

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGK-ALNRILLRDTVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 69  SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 1/125 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +  +      F V  AT+  +A    E     + +++D  +  + 
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHY-DIVLLDLMLPEMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      D  V  L  +      + G   GA+ ++ KPF+   +   +  + + 
Sbjct: 60  GEEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119

Query: 121 QKSKD 125
            +  +
Sbjct: 120 YEKSE 124


>gi|330974665|gb|EGH74731.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 193

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     +   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|330873059|gb|EGH07208.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 245

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       E       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAE-FRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++  +     G+ +  A    +A     +   P+ +++D  + G+  F
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRR-FKPSLVILDVMLPGMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L         + G   GA+ +L KPF  + L   MR L + 
Sbjct: 64  ELCRLIRAESS---VPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRR 120

Query: 121 QKSKDEN 127
            + ++  
Sbjct: 121 SQMQNSQ 127


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119

Query: 120 MQKSKD 125
             + + 
Sbjct: 120 RSEIRA 125


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +  +      F V  AT+  +A    E     + +++D  +  + 
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAE-NGQFDIVLLDLMLPQMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R      D  V  L  +      + G   GA+ ++ KPF+   +   +  + 
Sbjct: 60  GEQVLKQLRMDRN--DTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVL 117

Query: 119 QMQKSKD 125
           +  +   
Sbjct: 118 RRYEKSA 124


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        G+ VF A    EA      E  P+ +++D  +  +  F
Sbjct: 11  RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEK-PDLVILDVMLPDMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ + +L  + D    + G +AG + ++ KPF  E +   +  + +  K
Sbjct: 70  TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129

Query: 123 SKDENQFL 130
                Q L
Sbjct: 130 HGSSEQPL 137


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +R++ R      GF V EA    EA     +  LP+ +++D  M G   
Sbjct: 3   QQILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQH-LPDLMLLDVMMPGPDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +        + V  L    +    + G   GA+ +++KPF+   L   +R + +
Sbjct: 62  FEICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLR 121

Query: 120 MQKSKDENQFLD 131
                 E+  L+
Sbjct: 122 RGTRSGESPVLE 133


>gi|268316158|ref|YP_003289877.1| response regulator receiver modulated serine phosphatase
           [Rhodothermus marinus DSM 4252]
 gi|262333692|gb|ACY47489.1| response regulator receiver modulated serine phosphatase
           [Rhodothermus marinus DSM 4252]
          Length = 371

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+  H +R++  +  + + + V  A +  EA +   +E +P+ ++ D  M  
Sbjct: 1   MARYSILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEE-IPDLIISDIMMPK 58

Query: 59  VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     ++       +   +L  + D    + G R G + ++ KPF+ + L   +  
Sbjct: 59  MDGFALQQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPFDIDQLLARIER 118

Query: 117 LPQMQK 122
           L +  K
Sbjct: 119 LLERTK 124


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 16  KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 74

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 75  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 131

Query: 120 MQKS 123
             + 
Sbjct: 132 RHQQ 135


>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++V+    +  + ++     G+ V  A    E  E       P+ +++D  M  + 
Sbjct: 1   MPKVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTN-PDIVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+     ++ +  L  + +    + G   GA+ ++ KPF    L   ++   
Sbjct: 60  GLSVCKLVRK---TKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQL 116

Query: 119 QMQKSKDENQ 128
           +   S +E +
Sbjct: 117 RRGTSHEEIR 126


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+V+    +R++        GF V  A +  EA +  ++   P+  V+D  +  +  F
Sbjct: 11  TLLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHH-PDLCVLDVMLPDMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + + ++      +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 70  AVTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 129


>gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A+   +A      +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLL--DNTVDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQF 129
           +     ++ Q 
Sbjct: 116 RRSNWSEQQQQ 126


>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
 gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  I G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++     +  G  V  A    +A+     E LP+ +++D  + G    
Sbjct: 4   TILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAE-LPDLILLDWMLPGTSGL 62

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  +D
Sbjct: 123 RAPQLTDDVID 133


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA      E  P+ +++D+ +  + 
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEK-PDLVLLDQMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+   +++ V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GV-EVLRQIRSKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118

Query: 121 QKSKDE 126
           +K+  +
Sbjct: 119 RKAVAQ 124


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R           + V       EA E   K    + +++D  +  V  
Sbjct: 6   RRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHH-FDLVILDLMLPRVPG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L    R L +
Sbjct: 65  ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121

Query: 120 MQKSKDENQF 129
              +  E Q 
Sbjct: 122 RVHADSEPQR 131


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD  H +R+V R      GF V EA     A          + +++D  +  +   
Sbjct: 9   RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHW-DLVILDIMLPKIDGW 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +DV +  L    D    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 68  EVCREIRKI---SDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRR 124

Query: 121 QK 122
            +
Sbjct: 125 AR 126


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + R      G+ V EA    +  +    E   + +++D  +    
Sbjct: 6   MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFY-EKPFDLVILDVMLPKKD 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            + + +R++   T+  V  L    D E  + G   GA+ ++ KPFN + L   ++ L + 
Sbjct: 65  GW-SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK 123

Query: 121 QKSKDE 126
             +  E
Sbjct: 124 TNNMVE 129


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  EA +  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    ++V V  L  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRSLRQR---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDENQ 128
           + Q   +E +
Sbjct: 117 RRQGDVEELE 126


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA    E+E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEEN-PDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + V +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TENIE 123


>gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 1035

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD +  +R     L ++  + V  A +   A E   ++ LP+ ++ D  M      
Sbjct: 666 RILLVDDNADMRHYVSRLLSER-WQVETAANGAIALEMIAQQ-LPDLVLTDVMMPELDGF 723

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P+   + +  L      E  I G  AGA+ +L+KPF+   L   ++   QM
Sbjct: 724 GLLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQLQM 783

Query: 121 QKSKDEN 127
            + + E 
Sbjct: 784 SRLRQEQ 790


>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 225

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V  A+   EA E   +    +  VID  M  + 
Sbjct: 1   MKRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEA-EKIVENEQIHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1311

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D +  +R     L    G+ V        A    +    P+ ++ D  M      
Sbjct: 641 RILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHP-PHLVLTDVMMPRLDGF 699

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++       V V  L      E  + G + GA+ +L+KPF+ + L   +    ++
Sbjct: 700 GLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLEI 759

Query: 121 QKSKDE----NQFLDA 132
            +++ E     + L A
Sbjct: 760 ARARSEAALAQERLHA 775



 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              +LLV+ S  +R        + G  V  A    E  E     L P+  +ID  + G   
Sbjct: 1164 QRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLA-LRPDVALIDVGLPGIDG 1222

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             E    VR  P G  +++  L      E      RAG +  L KP N + L
Sbjct: 1223 YEVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1273


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score =  148 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  A+   +A +    +   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKP-FDFIILDVMLPNLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +  +  L  + D    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GIEITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QKSKDENQ 128
            + + + +
Sbjct: 120 LEPRQQAR 127


>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU121]
          Length = 236

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  E    P+ +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESS-QPDLIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
             +  +E +
Sbjct: 120 RSQFVNEVE 128


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    + ++ +      GF    A +  E     + E  P+ +++D  +     
Sbjct: 9   KKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEH-PDLIILDLMLPELDG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R       + +  L  + +    + G   GA+ ++ KPF+ + L   ++ L +
Sbjct: 68  LEVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLR 127

Query: 120 MQK 122
             +
Sbjct: 128 RLE 130


>gi|254464929|ref|ZP_05078340.1| response regulator receiver modulated serine phosphatase
           [Rhodobacterales bacterium Y4I]
 gi|206685837|gb|EDZ46319.1| response regulator receiver modulated serine phosphatase
           [Rhodobacterales bacterium Y4I]
          Length = 417

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA S   A E C+ E  P+ ++ D  M G+  
Sbjct: 13  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICQAET-PDLILSDWMMPGMNG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R        +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 72  LEFCRAFRSRSSEDYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 131

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 132 ILRMQRELSEKNRI 145


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A+   EA E   +   P+ +V+D  M      
Sbjct: 10  TILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHR-CEPDLVVLDVMMPRLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +L+KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRR 125

Query: 121 QK 122
            +
Sbjct: 126 VE 127


>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++         + V  A    EA +  E E  P+ LV+D  M  +  
Sbjct: 5   TKILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEH-PDLLVLDLMMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F         G +  V  L  + + E    G   G + ++ KPF+   L   ++ + +  
Sbjct: 64  FEVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRV 123

Query: 122 KSKDENQFLDA 132
             ++    L  
Sbjct: 124 SGEELAPRLKE 134


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + ++     GF V  A    E       E  P+ +V+D  +  +  
Sbjct: 3   QKVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSED-PDIVVLDLMLPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                        V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 62  VEVCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRS 121

Query: 122 KSKDENQ 128
           ++  +++
Sbjct: 122 QALRQHE 128


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R           + V       +A +   K    + +V+D  +  V  
Sbjct: 7   RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHH-FDLVVLDLMLPRVPG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 66  ERVCRVIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 122

Query: 120 MQKSKDENQF 129
              +  E Q 
Sbjct: 123 RVHADSEPQR 132


>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 229

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A    EA +    + LP+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHACDAREA-QTAIADRLPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|146319014|ref|YP_001198726.1| response regulator [Streptococcus suis 05ZYH33]
 gi|145689820|gb|ABP90326.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           05ZYH33]
          Length = 154

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAE-FPDIVILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQFLDA 132
            +  +    +++
Sbjct: 119 SELPETQTNIES 130


>gi|70731962|ref|YP_261704.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5]
 gi|68346261|gb|AAY93867.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5]
          Length = 243

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V               E   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLETYLSRCGFQVRSTADGA-GFRLALNEAPSDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P  + V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPKRSQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQKSKDE 126
             +   E
Sbjct: 125 RVQFTQE 131


>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
          Length = 230

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCLEADNAQDA-HAIIVDRKPDLILLDWMLPGGTS 62

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +++  L +D+ +  L  + + +  I G   G + ++ KPF+   L   ++ + 
Sbjct: 63  GIELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVL 122

Query: 119 QMQKSKD 125
           +     D
Sbjct: 123 RRAGPAD 129


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R+V      + G+ V EA    EA      E   + +++D  M  +   
Sbjct: 5   RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESW-DLIILDVMMPKMDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     V +  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  AVCQEIRRVSK---VPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRR 120

Query: 121 QKSKDENQ 128
             ++ + +
Sbjct: 121 AGTESKKE 128


>gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    VR++ +    + G+ V   T    A  +  +   P+ +++D  M  +  
Sbjct: 3   KTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSAL-YIARHENPDLILLDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           +   +RQ        V  +    +    + G   GA+ +++KPF    L   +R + +  
Sbjct: 62  Y-QFLRQFRQERQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRG 120

Query: 121 QKSKDENQFLDA 132
           ++  D+ + L A
Sbjct: 121 EEHPDKQEILRA 132


>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           N1-067]
 gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           S4-171]
          Length = 238

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   EA +          +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQTSEE 128


>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
 gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 243

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF V  A     A            +V+D  M G    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGK-ALNRILLRETVELIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
            ++
Sbjct: 129 PQE 131


>gi|71737172|ref|YP_273446.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557725|gb|AAZ36936.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 245

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       +       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
 gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
          Length = 244

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF VF A     A          + +V+D  M G    
Sbjct: 11  KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGK-ALTRILLRESVDLIVLDLMMPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  +V+    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 70  SICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRR 128


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H + K  + +F +  + V  AT   EA +    E   + +++D  M  + 
Sbjct: 10  MK-ILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLF-EAPFDLIILDIMMPKID 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G    V  L  + D E  I G   GA+ +L KPF+ + L   +R L + 
Sbjct: 68  GLAVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRR 127

Query: 121 QKSKDE 126
              + E
Sbjct: 128 SGGQTE 133


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ VF A    EA E  E E+ P  +++D  +     
Sbjct: 3   KRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVE-EVQPEMILLDIMLPQKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDEN 127
             K +DE 
Sbjct: 120 RTKLQDEQ 127


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +   +  G+ V  A    EA +  E E  P+ +++D  +  +  
Sbjct: 3   KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAES-PDLILLDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                RQ+    D  +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 62  LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +  + +      G+ V  A    EA +  E E  P+ +++D  +    
Sbjct: 1   MKKVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDEN-PDLIILDWMLPELE 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+    + V +  L  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVAKEIRKS---SHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHL 116

Query: 119 QMQKSKD 125
           +  ++ +
Sbjct: 117 RRTENIE 123


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ VF A    EA E  E E+ P  +++D  +     
Sbjct: 3   KRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVE-EVQPEMILLDIMLPQKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RHQQ 122


>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
 gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
          Length = 236

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R           + V       EA E   K    + +++D  +  V  
Sbjct: 6   RRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHH-FDLVILDLMLPRVPG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L    R L +
Sbjct: 65  ERVCRAIR---DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLR 121

Query: 120 MQKSKDENQF 129
              +  E Q 
Sbjct: 122 RVHADSEPQR 131


>gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ R       + + EA +  EA      E   + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+         G+ V EA S  EA      E  P+ +V+D  + G+  F
Sbjct: 8   RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAM-EGKPDLVVLDVMLPGMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ V  L         I G   GA+ +++KPFN   L   +R + + 
Sbjct: 67  EVCRLLR--EKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRR 124

Query: 121 -QKSKDENQFLDA 132
            +K+  E++ + +
Sbjct: 125 IRKAGLEDEKISS 137


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+    +  + R+     GF V EA    EA      E  P+ +++D  +     L
Sbjct: 12  TILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRV-AEAPPDLVLLDWMLPALSGL 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+ P   D+ +  +    + +  +     GA+ ++ KPF  + L   +R L + 
Sbjct: 71  EVCRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRR 130


>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 238

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   EA +          +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQTSEE 128


>gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 232

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+ D    +R++    F   GF V EA    EA    +    P+ +++D  M     
Sbjct: 5   QTVLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGK-PDIILLDIMMPVLDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    VR++   +DV +  L  +   +  I G   GA+ ++ KPFN   +   ++ + +
Sbjct: 64  FEVCKQVRKI---SDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLR 120

Query: 120 M--QKSKDENQF 129
              Q  + +N+ 
Sbjct: 121 RSSQFLQSQNKQ 132


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R          G+ V        A E  EK    + +V+D  +  +  
Sbjct: 6   RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKH-QFDLIVLDLMLPKLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +++KPF+   L   +R L +
Sbjct: 65  ERVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFR 121

Query: 120 MQKSKDENQ 128
                DE Q
Sbjct: 122 RTHLADEPQ 130


>gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
 gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           sinaloensis DSM 21326]
          Length = 1128

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+VD   +  +V        G+ V  A    EA E    E  P  +++D  M G+    
Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVSTAKDGHEALEKVAIE-RPELVLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     + + V  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 783 VCETLRLEYDHSQLPVIMLTALNQADDRVRGFNAGANDYLSKPFNKQELAARILAHLTAS 842

Query: 122 KS---KDENQFLD 131
           K+   + ENQ L 
Sbjct: 843 KAELRRVENQQLQ 855


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V  A     A E   K+   + +++D  +  + 
Sbjct: 1   MAKILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQN-FDAILLDLMLPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ  +     V  +  + D    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 60  GMTVLKTIRQDKI--STPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVL 117

Query: 119 QMQKS-KDENQFLDAI 133
           +  +    E++  DAI
Sbjct: 118 RRSQVDHHESERTDAI 133


>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 250

 Score =  148 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   +++++      + G+ V  A     A E+ +       +   + +++D  +
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQINGLDICRLLRHQ--GNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQKS 123
           R L + Q+ 
Sbjct: 138 RALLRRQRL 146


>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R+V        G  V  A    +       +  P+ +V+D  M  +   
Sbjct: 4   TILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQT-PDLIVLDIGMPEMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V + +L    +    + G   G + ++ KPF+   L   +  + + 
Sbjct: 63  ETCRRIRK---TSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKR 119

Query: 121 QKSKD 125
            + K+
Sbjct: 120 LRPKE 124


>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 409

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD +    +V  H+  D G+ V  A     A E  E    P  +++D  M G+  
Sbjct: 8   QSILIVDDNPNNLEVLAHILTDVGYQVSVAIDGETAIEQVEYH-QPELILLDIMMPGIDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++  PL  ++ + +L    D    + G   GA  ++ KPF  E +   +R   +
Sbjct: 67  FETCRRLKANPLTCEIPIIFLTALSDSNNKVNGLSVGAVDYISKPFQSEEVLARIRIHLK 126

Query: 120 M----QKSKDENQFLDA 132
           +    +K + + Q L+ 
Sbjct: 127 LYNLTRKLEQQKQLLEE 143


>gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 246

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVSINLEMAGYDVNQAEDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ +  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F    A     A +    + +P+ +++D  + G   
Sbjct: 3   KRILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAA-QTAIADRVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RTREDDED 129


>gi|28868500|ref|NP_791119.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851738|gb|AAO54814.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331015209|gb|EGH95265.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 245

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       +       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQ-FRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
 gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ R       + + EA +  EA      E   + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|213968363|ref|ZP_03396507.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384629|ref|ZP_07233047.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058918|ref|ZP_07250459.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302133031|ref|ZP_07259021.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927001|gb|EEB60552.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|330963154|gb|EGH63414.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 245

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       +       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQ-FRRAFNEEPSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++ +      GF    A+   EA +  E E  P+ +++D  +      
Sbjct: 6   KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEK-PDLIILDVMLPKVDGF 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + +  L    +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 65  EVCRSLRARGS---MPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRR 121

Query: 121 QKSKDEN 127
              K + 
Sbjct: 122 VAEKQQQ 128


>gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
 gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
          Length = 407

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD   ++R +     +  GF   EA +  +A E       P+ +++D +M  +   
Sbjct: 4   KILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAH-QPDLIIMDVNMPEMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P+ + + +  +      E  I G  +GA+ ++ KPF+   L   +  L + 
Sbjct: 63  EACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLLRR 122


>gi|300866045|ref|ZP_07110777.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300335960|emb|CBN55935.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 352

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M     ++L+VD + + R +        G  V  A     A E        + +++D  M
Sbjct: 1   MKPEEGNVLVVDDNEVNRDLLARRLQRQGHKVQVAEDGILALEMMRSHP-FDLVLLDIMM 59

Query: 57  EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +     + H++       + V  +    D + ++     GA  +L KPFN   L+  +
Sbjct: 60  PQMNGYQVLEHLKADDKLRYIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPVLLKARI 119

Query: 115 RELPQMQKSKDENQ 128
               + ++ +D+ Q
Sbjct: 120 SACLEKKRLRDQEQ 133


>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
 gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
          Length = 224

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++  + +R++ R      GF V EA            E LP+ +V+D  + G+ 
Sbjct: 1   MQRILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSE-LPDLVVLDLMLPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P+   + V  L    +    I G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GCDVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  + R+     G+ V       EA E   +E  P+ L++D  + G  
Sbjct: 1   MPKILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEA-ELLLQESQPDLLLLDWMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + +  L    +  + I G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GIELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIF 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ L++D  +  V 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAE-QPDILILDLMLPEVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQFLDA 132
                ENQ  ++
Sbjct: 119 ADLVVENQVEES 130


>gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37]
 gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37]
          Length = 241

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +R++     +   F V  A    E  +       P+ +++D  + G   
Sbjct: 5   KQVLVIDDDQAIRELLAEYLSKNNFDVITAEDGLE-MDKQRLIHQPDLIILDIMLPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ    + V +  L    D    + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FILCQRIRQ---TSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLR 120

Query: 120 MQK-SKDENQ 128
             + + +ENQ
Sbjct: 121 RTQFASEENQ 130


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   +V +V      + GF V  A     A    E    P+ +V+D  + G+   
Sbjct: 57  RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTP-PDLVVLDLMLPGLDG- 114

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I   R++     V V  L    D    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 115 IEVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRR 172


>gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 273

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +  +  +     G+ V +A     A E  E+    +++++D  + G+ 
Sbjct: 1   MEHILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKY-DFIILDVMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G+ V +  L  + +    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GMDICRKVRKKGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILRR 119

Query: 121 QKSKDENQFLD 131
             S+++   +D
Sbjct: 120 TGSQNDLNIVD 130


>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 212

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA E  E+  +P+ ++ D  M  +  
Sbjct: 10  KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQSPVPDMIICDVMMPEMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  +R     + +   +L  +   +  I G R GA+ +++KPF  E L   +     
Sbjct: 70  YTFVEKLRDDSRTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129

Query: 120 M 120
            
Sbjct: 130 R 130


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E C +E  P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALE-CFQECEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125

Query: 121 QKSK 124
            + +
Sbjct: 126 VEKE 129


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 176

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 177 EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233


>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
 gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 243

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF +  A     A          + +V+D  M G    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
            ++
Sbjct: 129 PQE 131


>gi|330447872|ref|ZP_08311520.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492063|dbj|GAA06017.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 243

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V  A    E  + C     P+ +++D  M G   
Sbjct: 5   KQVLVVDDDKEIRELLEEYLTKNGFEVQTAAEGEE-MKRCLAAGYPDLILLDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +DV +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQHIRKS---SDVPIIMLTAVSDEMDQIIGLEIGADDYIAKPFSPRQLLARIKALLR 120

Query: 120 MQKSKD 125
             K  D
Sbjct: 121 RIKPSD 126


>gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 257

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V +V        G  V  A     A         P+ +V+D  + G+    
Sbjct: 19  VLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTH-RPDLVVLDLMLPGMDGLE 77

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R       V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 78  VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTR 135


>gi|289678167|ref|ZP_06499057.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 195

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +    + G+    A+   EA +   KE  P  +++D  + G+   
Sbjct: 14  KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIA-KEERPKLILLDVMLPGMDGY 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  +    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 73  DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 132


>gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135]
 gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135]
          Length = 1312

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F +  + V  A +  E  +  + + +PN ++ D  M  +    
Sbjct: 1057 ILVVEDNRDIREYVRSSFEEM-YEVLTAANGKEGWDIAQSQ-IPNIIISDIMMPVMDGIE 1114

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               H+++    + + V  L  +   +    G  AGA+SF+ KPF+   L   +  + + +
Sbjct: 1115 LCRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNILENR 1174

Query: 122  K 122
            +
Sbjct: 1175 R 1175


>gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    ++++  +   +  ++V    S  +A      E+LP+ +++D  + G   +
Sbjct: 4   TVLVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKI-NEILPDLILLDWMLLGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   +R+ P    + V  L   V+    ++G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EFARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVLRR 122

Query: 121 QKSKDENQFLDA 132
              +  ++ L+A
Sbjct: 123 SLPEASDEILNA 134


>gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
 gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           orientalis CIP 102891]
          Length = 1128

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+VD   +  +V        G+ V  A    EA    EKE  P  L++D  M G+    
Sbjct: 724 LLVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALAAVEKEK-PELLLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + +  L      +  I G   GAN +L KPFN++ L   +       
Sbjct: 783 VCESLRESYDHAALPIIMLTALNQTDDRIRGFSVGANDYLSKPFNKQELAARIVAHL--T 840

Query: 122 KSKDENQFLD 131
            SK E + L+
Sbjct: 841 ASKAEQRRLE 850


>gi|254444474|ref|ZP_05057950.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198258782|gb|EDY83090.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 482

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +   R+    L     +    A S   A E  E E  P+ +++D  M G+  F
Sbjct: 8   TILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLE-EHTPDVILLDVMMPGMSGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +++ +  +    D E MI G  AGA+ FL KP ++  LR  +R + ++
Sbjct: 67  ETCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKIELRSRIRSILRL 126

Query: 121 ---QKSKDENQFLD 131
              +K  DE Q  +
Sbjct: 127 NRFRKLCDERQKFE 140


>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 12/139 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   +++++      + GF V  A     A E+ +       E   + +++D  +
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PHINGLDICRLLRHQ--GNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQKSKD--ENQFLD 131
           R L + Q+     + Q L 
Sbjct: 138 RALLRRQRLSSLPQLQVLK 156


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +   +  G+ V  A    EA +  E E  P+ +++D  +  +  
Sbjct: 3   KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESES-PDLILLDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                RQ+    D  +  L  +      + G   GA+ ++ KPF+   L   ++   +  
Sbjct: 62  LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRT 120

Query: 122 KSKD 125
            S +
Sbjct: 121 SSAN 124


>gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 467

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+V+ +        +     GF V  AT    A +  E    P+ +++D  M G+  F
Sbjct: 9   NLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAA-QPDLILLDVMMPGMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V ++    D    + G   GA  ++ KP   E +   ++    +
Sbjct: 68  EVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSRIQTHLTL 127

Query: 121 QKSKDENQ 128
           +  + E Q
Sbjct: 128 RNLQKELQ 135


>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
 gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++        GF    AT   +  E   +  LP+ +++D  + G+L
Sbjct: 1   MQTVLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVR-TLPDLILLDLMLPGML 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R+      + V  L  + +    + G   GA+ +++KPF+   L   M+ + 
Sbjct: 60  GTEVCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVL 119

Query: 119 QMQKSK 124
           +  K++
Sbjct: 120 RRSKTR 125


>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 227

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RKV +       F +  A+   EA      E  P+ +++D  +  +   
Sbjct: 4   KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKV-NEFNPDLIILDLMLPEISGE 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ        +  L  +   E  + G   GA+ +L+KPF+   L   ++ + + 
Sbjct: 63  EVCQKIRQD---KQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR 119

Query: 121 QKSKDE 126
              K E
Sbjct: 120 SNQKAE 125


>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 241

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++ R      G+++ EA     A +    E+  + +++D  + G+   
Sbjct: 9   RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKK-GLEIDYDLILLDLMLPGMDGV 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L    +    + G  AG + +++KPF+   L   ++ + + 
Sbjct: 68  DVCRELRNK---KATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRR 124

Query: 121 QKSKD 125
             +  
Sbjct: 125 SSATA 129


>gi|294495497|ref|YP_003541990.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292666496|gb|ADE36345.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 170

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++D         +      G+ V EA +     E  E E  P+ +++D  M  +  
Sbjct: 48  QTILIIDDEPDAIIAAKRALQSEGYNVIEAYNGKTGLEAIE-EKTPDLILLDVMMPDMDG 106

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++  L   + +  L  + + +  I G   GA+ ++ KPFN   L+  +R + +
Sbjct: 107 FEICKQLKKDELYNHIPIIMLTAKGEVDDRIEGIETGADDYITKPFNLRELKARIRMVLR 166

Query: 120 MQKS 123
             ++
Sbjct: 167 RAQN 170


>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 235

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA E   K   P+ +++D  +     
Sbjct: 4   QKILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHE-PDLILLDIMLPYQDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  MEVCREVRKKF---DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLR 119

Query: 120 MQKSKDE 126
             +   E
Sbjct: 120 RNQKSKE 126


>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 240

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+V+    +R++  +     G+    A    +A      + LP+ +++D  +  +  +
Sbjct: 4   KILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTII-HDALPDLILLDWMLPNMTGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F   +R+      + +  L         +AG   GA+ ++ KPF+   L   +  + + 
Sbjct: 63  DFARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRR 122


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R      G+ V EA    EA E   ++     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    +   V  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIRQS---SQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
                  + +DA
Sbjct: 122 SHVLGAEEIIDA 133


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R          G+ V        A E  EK    + +V+D  +  +  
Sbjct: 6   RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKH-QFDLIVLDLMLPKLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 65  ERVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFR 121

Query: 120 MQKSKDENQ 128
                DE Q
Sbjct: 122 RTHLADEPQ 130


>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +VD    +R +        G+ V  A S  EA     ++  P+ +V+D  M G     
Sbjct: 7   IAVVDDHRDIRDLVGKYLTHQGYRVSVAESG-EALRRILEKGAPDLVVLDIMMPGEDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              RQ+   T++ V +L    D    I G   GA+ ++ KPFN   L   +R + +   S
Sbjct: 66  VC-RQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVNS 124

Query: 124 KDENQ 128
               +
Sbjct: 125 LPPQR 129


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +V R      G+ V  A     A E   +E     +++D  +  +    
Sbjct: 5   ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALE-LGREPGLQLIILDLMLPRMSGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R         +  L         + G R GA+ +L KPFN + L   +  + +    
Sbjct: 64  VCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQ 123

Query: 124 KDENQ 128
              +Q
Sbjct: 124 SKPSQ 128


>gi|253570096|ref|ZP_04847505.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840477|gb|EES68559.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1450

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  ++   +++ +   + V  A++  E  +      +P+ ++ D  M  +   
Sbjct: 1192 TILVVEDNEELKTFLKNILS-ENYTVITASNGKEGWQHAVDN-IPDLIISDVMMPVMDGL 1249

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1250 EMIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309

Query: 121  QKSKDE 126
            +KS  E
Sbjct: 1310 RKSLQE 1315


>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 235

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA     +E  P+ +++D+ +  + 
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEK-PDLVLLDQMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+   ++  V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GV-EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118

Query: 121 QKSKDE 126
           +K+  +
Sbjct: 119 RKAVAQ 124


>gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
 gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
          Length = 229

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      + LP+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++     DV V  L    + E  + G   GA+ +L+KPF+ + L   ++ + +
Sbjct: 62  IQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|145594416|ref|YP_001158713.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303753|gb|ABP54335.1| response regulator receiver modulated diguanylate cyclase
           [Salinispora tropica CNB-440]
          Length = 326

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    + +         G+ V  A    EA E   +   P+  V+D  M     LE
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGYEVIHAGDGQEALEVIARH-RPDLAVVDLMMPRVDGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P+   + V  L  +      + G  AGA+ +L+KPF+   L   +    +  
Sbjct: 70  LTRRLRADPMTAVLPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRRN 129

Query: 122 KSKDE 126
           K   E
Sbjct: 130 KEFRE 134


>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD  H + ++ ++     G+ V    +             P+ +++D  + G+   
Sbjct: 5   TILVVDDEHDILELLKYNLEREGYSVITVETGEA-AAATAAAKQPDLIILDLMLPGIDGV 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ +  L  + +   +I+G   GA+ ++ KPF+ + L   +R L + 
Sbjct: 64  EVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123

Query: 121 QKSKD 125
           ++ K+
Sbjct: 124 KQLKE 128


>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 247

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score =  148 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    ++++  +     GF V  A S  EA +   +E   + +V+D  + G
Sbjct: 1   MRKPSILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREP-IDAMVLDLMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E    VR       + +  L  + + + +++G   GA+ ++ KPF+   L   +  
Sbjct: 60  KDGNEVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEA 119

Query: 117 LPQM 120
             + 
Sbjct: 120 ALRR 123


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + V +A +  +A +   +    + +V+D  M G   +
Sbjct: 6   KILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEY-DLIVLDLMMPGIDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L + 
Sbjct: 65  EVCEEIRKH---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 121 QKSKD 125
             S  
Sbjct: 122 SSSTK 126


>gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+         G+ V  A     A    E+E  P+ ++++  + G+   
Sbjct: 6   RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEP-PDLVLLEVMLPGLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V +  +         I G   GA+ +L+KP+  E L   +R L +  +
Sbjct: 65  AVARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRRGR 124


>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 225

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +      +  F   EA +  EA +   K    + ++ID  M  +  
Sbjct: 4   KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQIL-KNNKVDVILIDVMMPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           F    R     +DV + +L    D    + G + G + +++KPF+   L   +  + +  
Sbjct: 63  FTLCARIREQ-SDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRA 121

Query: 121 QKSKDENQFLD 131
             +K +N+ L 
Sbjct: 122 YHNKQKNEDLS 132


>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
          Length = 236

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V+ A    EA +  E E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAE-EVQPDMILLDIMLPKRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCRELRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLR 118

Query: 120 MQKS 123
             ++
Sbjct: 119 RHQN 122


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +      G+ V  A     A+E       PN +V+D  + G+   
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMMLPGIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++V V  L  + +    +     GA+ +++KPF  + L   ++ + +   
Sbjct: 66  -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 123 SKDEN 127
            ++ +
Sbjct: 125 GEEPD 129


>gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 248

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A    EA +   +   P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLF-RNCEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R L + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 125

Query: 121 QKSKD 125
            + + 
Sbjct: 126 VEKEQ 130


>gi|91203277|emb|CAJ72916.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 238

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ D      K+ R +   F + V EA    EA      E  P+ +++D  M    
Sbjct: 1   MAKILVADDITQNVKLLRVILTAFKYEVIEAYDGEEALNKARTEN-PDLILLDIMMPKIT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      ++ +  +    + +  I G  AGA+ F+ KPFN+  L   ++ L 
Sbjct: 60  GYEVCKKLRADEATKNIPIIMITALHEMDDRIKGIEAGADDFISKPFNKTELLARVKSLL 119

Query: 119 QMQ---KSKDENQFLD 131
           + +     +DE++ L+
Sbjct: 120 RPRTVAGREDESEVLN 135


>gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 248

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A    EA +   +   P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLF-RNCEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
            + + 
Sbjct: 126 VEKEQ 130


>gi|330895752|gb|EGH28041.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 187

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       + R     E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPS-DLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 275

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 51  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 109

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 110 GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 166

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 167 RRTNEHKQIQ 176


>gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 255

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +  + +      G  V  A    EA     +E  P+ +++D  +     +
Sbjct: 4   KILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEE-QPDLILLDLMLPVKDGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR       + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  DVCREVRTRL---HMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHLRR 119

Query: 121 QKSKDE 126
           Q+   E
Sbjct: 120 QQKTSE 125


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +LLV+     R+V  +     GF V  A    EA      E  P+ +++D  M  +  +E
Sbjct: 8   VLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAM-LLVSEAAPDLVILDWMMPLMSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  L    +    + G   GA+ +++KP+N   L   +R   +  
Sbjct: 67  VCRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRT 126

Query: 122 KSKDENQFLD 131
           +       L 
Sbjct: 127 RPAAAGALLS 136


>gi|109898155|ref|YP_661410.1| two component AraC family transcriptional regulator
            [Pseudoalteromonas atlantica T6c]
 gi|109700436|gb|ABG40356.1| two component transcriptional regulator, AraC family
            [Pseudoalteromonas atlantica T6c]
          Length = 1341

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L++D +  +R+      + + + + +A +  E        +LP+ ++ D  M  +  
Sbjct: 1097 TTVLVIDDNAELRQFIALRLSGY-YRITQAENGEEGLAKAIS-VLPDVIICDVMMPKMDG 1154

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 H+R       + +  L  +      + G + GA+ +L KPF+   L   +    +
Sbjct: 1155 LTLMHHLRGNQHTRSIPIILLSAKSAKRDTVEGLQRGADDYLTKPFDTSELVARVDAQLR 1214

Query: 120  MQKSKDENQFLDA 132
             +K   E   L+A
Sbjct: 1215 GRKLIRE--KLEA 1225


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+           +    GF V  A     A    E+    + +++D  + G  
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGA-DLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    + V V  L         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRALRQR---STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   DE
Sbjct: 117 RRRGEIDE 124


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA         P+ +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREF-ASFRPDLIILDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + +    + G   GA+ +++KPF+ + L   +R + +
Sbjct: 64  YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +      + G+ + +A    +A +  EK   P+ +++D  +  + 
Sbjct: 4   MKKILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKS-QPDLVILDLMLPKMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V V  L  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 63  GLEVCREIRKQSA---VPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 223

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   +  KV        G+ V    S  E      +E  P+ +V D  M  + 
Sbjct: 1   MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQE-QPDVVVSDVVMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ   G  V   +L    + +  + G   GA+ +++KPF    L   +    
Sbjct: 60  GFEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPFEPLELVAKIEAQI 119

Query: 119 QMQKSKDENQFLDAI 133
           +  + + + + L  I
Sbjct: 120 ERAR-RTQLEILRLI 133


>gi|149197475|ref|ZP_01874526.1| response regulator [Lentisphaera araneosa HTCC2155]
 gi|149139493|gb|EDM27895.1| response regulator [Lentisphaera araneosa HTCC2155]
          Length = 223

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +    R   +  GF    A+++ +A E+   E   N +++D  +    
Sbjct: 1   MPKILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYL-AENTINLIILDIGLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R      ++ V  L    D    I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GFDFCRKLRAS---QNIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVL 116

Query: 119 QMQKSKDENQ 128
           +  ++  E +
Sbjct: 117 RRTQNSFEIE 126


>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 248

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ VF A    EA +       P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIF-HNCEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSK 124
            + +
Sbjct: 126 VEKE 129


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+    A    EA      E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQY-AEFQPDLIILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   + + +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLEVA-KEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 121 QKSKD 125
            ++ +
Sbjct: 119 TENIE 123


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +   +  G+ V  A    EA +  E E  P+ +++D  +  +  
Sbjct: 4   KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAES-PDLILLDLMLPKIDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                RQ+    D  +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 120


>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 236

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  +  
Sbjct: 4   RKILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVE-EFNPDLILLDIMLPLMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    + V +  L  +      + G   GAN ++ KPF+   L   ++   +
Sbjct: 63  MEVCREVRK---TSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLR 119


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    + ++ +      G+          A+     E  P+ +++D  +  +   
Sbjct: 7   KILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFF-EYKPDLVLLDVMLPHMDGI 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V  L  + +    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKDSE---TPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 121 QKSKD 125
             +++
Sbjct: 123 YNAEN 127


>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 237

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ +    D G+ +  A    +     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 64  LEICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123

Query: 122 KSKDENQFLDA 132
           ++   N  +DA
Sbjct: 124 EAMSRNLRMDA 134


>gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Alkaliphilus metalliredigens QYMF]
 gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Alkaliphilus metalliredigens QYMF]
          Length = 449

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R   +       + VFEA +  E  E   +EL P+ +++D  M  + 
Sbjct: 1   MNKILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKF-QELQPDLVLLDLKMPVMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  +   +   + V  +      E  +   + GA  ++ KPF+ E L+  + +  Q+
Sbjct: 60  GLEALQKMKGIDEHIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKALQV 119

Query: 121 QKSKDENQFLDA 132
           +  +D+  +L  
Sbjct: 120 KGLQDKVDYLKE 131


>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++ R  F   G+ V  A++  EA +  +    P+ +++D +M G+  
Sbjct: 3   KKILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALD--QSSHNPDLILLDVNMPGIDG 60

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R         + +L  +V+ +  I G   G + ++LKPF+ + L   +    +
Sbjct: 61  FEVCRMIR---DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLR 117

Query: 120 MQKSKDENQ 128
            ++ + ++Q
Sbjct: 118 REERRSQSQ 126


>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G++   A    +A E       P  +V+D  M  +   
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGA-YDPELIVLDVLMPRMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G  V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 71  TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRR 128


>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
 gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
          Length = 243

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      GF +  A     A          + +V+D  M G    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGK-ALNRILLRETVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
            ++
Sbjct: 129 PQE 131


>gi|254411354|ref|ZP_05025131.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181855|gb|EDX76842.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 483

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D S    ++        GF +  A     A E    +  P  +++D  M G+  F 
Sbjct: 28  ILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDP-PTLVLLDVMMPGIDGFE 86

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   ++ + ++    D    + G   GA  ++ KPF +E +   ++   +++
Sbjct: 87  TCRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQQEEVLARVKVHLKLR 146

Query: 122 ----KSKDENQFL 130
                 +++N  L
Sbjct: 147 TLTKTLEEQNTRL 159


>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 232

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    + ++ +      G+  FEA S  +A E   K    + +++D  M    
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEIL-KNSKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLK 126


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R++     +  G+ V  A S  EA E  E+   P+ +++D  +  +  F
Sbjct: 8   TIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIER-TQPDLIILDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D  V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  LLV+    + ++    F    F V       EA     +E  P+ +++D  +EG
Sbjct: 1   MARVKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEAL-LLARENTPDIVLLDWMVEG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R+ P   +V +  L    + E  + G   GA+ ++ KPF+   L   +  
Sbjct: 60  ISGIEVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGA 119

Query: 117 LPQMQKSKDENQFL 130
           + +  +     + L
Sbjct: 120 VLRRVRPALAGEAL 133


>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +       F V EA    EA +   KE     L++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
               + ++ L A
Sbjct: 122 TGQSNPDEILSA 133


>gi|307153375|ref|YP_003888759.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7822]
 gi|306983603|gb|ADN15484.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7822]
          Length = 381

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    ++K+         + V  A++  E  E    +  P  ++ D  M G+ 
Sbjct: 1   MAQILIIDDDLAIQKLLSKSLMRSQYQVIVASNGNEGLEKAL-QYCPALIICDWLMPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +  F   L  +      I G  AGA+ FL KP     L+  +R   
Sbjct: 60  GLEVCRQIKATPKLSTTFFILLTAQGSLNDRIMGLDAGADDFLCKPIEINELQARVRAGL 119

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 120 RLHQLSHDLQQQKQLLE 136


>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    + KV        G+ V  A    EA +   ++L P+ +++D  +    
Sbjct: 1   MK-VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKA-RQLGPDIVLLDVMLPSLD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     +DV +  L    D    I G   GA+ +++KPF+ + +   MR + 
Sbjct: 59  GWGVCKEIR---RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIF 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +R++ R       + V  A    EA     +E  P+ +V+D  +    
Sbjct: 1   MK-ILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAARE-APDLIVLDIGLPELD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ      V + +L    D    I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 59  GFEVCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIA 115

Query: 119 QMQKS 123
           +  ++
Sbjct: 116 KRSRA 120


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L D +  +R   + L +   + V        A      + LP+ ++ D  M      
Sbjct: 649 KIVLADDNADMRNYVKRLLSQQ-YEVEAVKDGAAALAAIRGQ-LPDLVLTDVMMPEVDGF 706

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R  P   ++ +  L      E  I G  AGA+ +L+KPF+   L   +    +M
Sbjct: 707 ELLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSARELLARVEANLKM 766

Query: 121 QKSKDENQFLD 131
            + + E    +
Sbjct: 767 AQLRQEATRRE 777



 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 5/105 (4%)

Query: 14   RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMP- 70
            R+    L   +G       S  EA      +  P+ L+ D  M  V     I  VR  P 
Sbjct: 1179 REFIVFLIEQYGGSAIAVASANEALVTL-TQFQPDVLLSDIGMPEVDGYMLIQQVRATPP 1237

Query: 71   -LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              G  +    L               G    + KP     L   +
Sbjct: 1238 AQGGQIPAIALTAYAGEIDYQHAMSVGFQRHIPKPVEPTKLVEVI 1282


>gi|300868441|ref|ZP_07113062.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333575|emb|CBN58250.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 382

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +     + + +  D G+ +  A +   A    E+   P+ +++D  M G+   
Sbjct: 14  RILVVDDAPDNVLLVQTILEDEGYEISSAENGFSALAQIEQSP-PDLVLLDVMMPGMDGY 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  +        ++ G   GA+ F+ KP   + L   +R L ++
Sbjct: 73  EVTQRIRQNEKLPFIPILLITAHDQPS-VVQGLDTGADDFIRKPVEMDELLARVRSLLRL 131

Query: 121 QKSKDENQFLD 131
           + S DE   + 
Sbjct: 132 KHSVDERDLIA 142


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R + R      GF V EA    EA E    E  P+ +++D  + G+   
Sbjct: 2   RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTE-RPDLVLLDIMLPGIDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    ++G  AGA+ +L+KPF  E L   +R + + 
Sbjct: 61  AVCRILRRE---SDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +   +  G+ V  A    EA +  E E  P+ +++D  +  +  
Sbjct: 4   KKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESES-PDLILLDLMLPKIDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                RQ+    D  +  L  +      + G   GA+ ++ KPF+   L   ++   +  
Sbjct: 63  LEVA-RQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRT 121

Query: 122 KSKD 125
            S +
Sbjct: 122 SSAN 125


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+V+    +R++        GF V  A     A +    E+ P+ LV+D  +  +  F
Sbjct: 8   TLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLA-AEVEPDLLVLDVMLPDMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V +L      +  + G   G + ++ KPF+ E +   +R + +   
Sbjct: 67  TITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH 126

Query: 123 SKDE 126
           ++D+
Sbjct: 127 AEDQ 130


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R          G+ V        A E  EK    + +V+D  +  +  
Sbjct: 17  RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKH-QFDLIVLDLMLPKLSG 75

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 76  ERVCRAIR---DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFR 132

Query: 120 MQKSKDENQ 128
                DE Q
Sbjct: 133 RAHQADEPQ 141


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R      G+ V  A++  E  +    E  P+ +V+D  M  V  F
Sbjct: 4   RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSED-PDVVVLDVMMPQVDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R    G+ + V  L  + + E  + G   GA+ +L+KPF  E L   +R L + +
Sbjct: 63  EALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRK 121


>gi|325299779|ref|YP_004259696.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
 gi|324319332|gb|ADY37223.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
          Length = 1437

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +  +RK    +     + V EA +     +   KE +P+ ++ D  M  +   
Sbjct: 1175 TILLVEDNEELRKFTGRVLRHE-YRVLEAENGRAGLDMALKE-IPDIIISDVMMPEMDGI 1232

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++  P    + V  L  +   E  I G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 1233 ELLDIIKHNPSVCHIPVVVLSAKASLEDRIKGLEYGADGYITKPFSSAYLLARIKSLMRQ 1292

Query: 121  QKSKD 125
            +++  
Sbjct: 1293 KENLK 1297


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A    EA E  E E  P+ +++D  +  V  
Sbjct: 3   KKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAED-PDLIILDLMLPKVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRE 120

Query: 122 KSKD 125
            +  
Sbjct: 121 ATAQ 124


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ LL++D   +  K  +    + GF V  A    E  E        + +++D  +  + 
Sbjct: 1   MERLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNY-DLVILDIMLPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +++ +  L    D    I G   GA+ +L KPFN   L   +R L 
Sbjct: 60  GFSVCREIR---TFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALL 116

Query: 119 QMQ-----KSKDENQF 129
           +       K K+E + 
Sbjct: 117 RRASNPYVKKKEEIRR 132


>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 245

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +++LP+ ++ D  M      
Sbjct: 20  RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFSKA-QQMLPDVVITDVMMPRLDGY 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 79  GLLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 138

Query: 121 -QKSKDENQFLD 131
            Q+   E     
Sbjct: 139 QQRLLQEAARFA 150


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++V+    +R++      + GF V +A    +A +  EK  + + +++D  +  V   
Sbjct: 5   RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPM-DLVILDVMLPNVDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ   G+ V +  L    +    + G   G + +++KPF+ + L   ++ L + 
Sbjct: 64  TVCRQIRQ---GSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKR 120

Query: 121 QK--SKDENQFLD 131
            +  +  +++ + 
Sbjct: 121 SRGNANAQDRVIK 133


>gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 428

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 4/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   +   +   + N   + +  AT+  +A +    +  P+ +++D  M G+  
Sbjct: 7   QKILIVDDEPLNISIVAEILNHE-YDLLVATNGEKALQIVSLDPKPDLILLDIMMPGMNG 65

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++++P    + + +L  + D E +I G  AGA  F+ KPF +E L   ++   Q
Sbjct: 66  FEVAKRLKEIPETFQIPIIFLTAKHDSESIIKGFEAGAVDFVSKPFQKEELLARIKNTLQ 125

Query: 120 MQKSK-DENQFLD 131
           M   K   N+ L+
Sbjct: 126 MFNLKNALNRALE 138


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-----PNYLVIDES 55
           M  LL+VD    +R          GF V  A    +A +  +          + +++D  
Sbjct: 1   MPRLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLM 60

Query: 56  MEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           + G   L+   H+R+        +  +         + G   GA+ +L+KPF    L   
Sbjct: 61  LPGVGGLDVCRHLRRSD--PHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVAR 118

Query: 114 MRELPQMQKSKDE 126
            R L +  +   E
Sbjct: 119 CRALLRRSQQTIE 131


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A    EA +  E +  P+ +V+D  +  V  F
Sbjct: 11  RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAE-DFRPDLVVLDVMLPDVDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  V V +L    D    +AG   G + ++ KPF+ E +   +R + + 
Sbjct: 70  TVTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127


>gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 248

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA E  E +  P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFE-QCNPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
            + + 
Sbjct: 126 VEKEQ 130


>gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 645

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    ++   +  D GF V  A     A E  E    P+ +++D  M  +  F 
Sbjct: 10  ILIVDDTPTNLEMLLDILEDAGFKVVVAEDGESAIEMVEYAP-PDLILLDILMPRLDGFE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ + ++   +D  + + G   GA  ++ KPF  E +   +    ++Q
Sbjct: 69  TCRRLKSNPKTADIPIIFMTALIDNVEKLKGLNLGAVDYVTKPFEHEEVLARINIHLRLQ 128

Query: 122 ----KSKDENQFL 130
               K  ++N+ L
Sbjct: 129 NLTKKLLEQNEHL 141



 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 1/116 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGVLEF 62
           LLLVD    +R+  + L  ++ + V  A +  EA E   + E   + +++D  M  +   
Sbjct: 522 LLLVDDEAGIRETTKILLENYNYQVLTANNGIEAIELYAQYEHKVSLVLMDIMMPAMGGD 581

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A      +  +V +  +   +  EK+    +    +FL KP+  + L   +  + 
Sbjct: 582 TAIRTLQKMNPEVKIIGISGLISSEKLSQEMKMKTQAFLPKPYTAQELLHTIDLIL 637


>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD    +R++ R      G+ + E+     A +    +   + +++D  + G+   
Sbjct: 6   SILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDY-DLILLDIMLPGMDGT 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +RQ        V  L  + +    + G   GA+ +++KPF+   + + ++ + + 
Sbjct: 65  EVCARLRQ---FKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRR 121

Query: 121 QKSKD 125
             +  
Sbjct: 122 SSATA 126


>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 253

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   +++++      + G+ V  A     A E+ +       +   + +++D  +
Sbjct: 23  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 83  PQINGLDICRLLRHQ--GNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARC 140

Query: 115 RELPQMQKS 123
           R L + Q+ 
Sbjct: 141 RALLRRQRL 149


>gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 229

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   L    G+    A +   A       LLP+ +++D  + G   
Sbjct: 3   KRILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASL-TGLLPDLVLLDWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+R+  L   + V  L    + E  + G   GA+ ++ KPF+ + +   +R + +
Sbjct: 62  IQFIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +         EA +       PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPV-FKPNLILLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCRELRSS---SQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDENQ 128
             ++  + Q
Sbjct: 121 RYQAAPQPQ 129


>gi|119511740|ref|ZP_01630843.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463577|gb|EAW44511.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 412

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD   + R     L +  G+ V EA S   A     K+  P+ +++D  M  +  F
Sbjct: 95  TILVVDDHTMSRISAAALLSMEGYEVIEAESGHTAL-LMVKQKQPDLILLDVMMPIMDGF 153

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + + ++    D    I G   GA+ FL KPF+   L   ++ L + 
Sbjct: 154 EVCQRLKQDEHTRLIPIIFITALNDRRSRIRGIEVGADDFLSKPFDNVELTARVKSLVRQ 213

Query: 121 QKSKDENQFLDAI 133
           ++  ++    + +
Sbjct: 214 KRLNEDLDHAEKV 226


>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
 gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 241

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R +     +  G+ V  A+   E      +E  PN +++D  M      
Sbjct: 7   KILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRRE-YPNLVILDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQEIRKE---SDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRR 122


>gi|332662395|ref|YP_004445183.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
 gi|332331209|gb|AEE48310.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
            hydrossis DSM 1100]
          Length = 1361

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LL++ +H +R+    +     + V    +  EA +   ++ +P+ ++ D  M  +  F
Sbjct: 1106 RILLIEDNHDLRQYLTQILAGK-YQVRTLGNGREA-QLNLEQWMPDLILSDIMMPLMDGF 1163

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++       + +  L    D    +   R G + +L+KPF    L   ++ L Q 
Sbjct: 1164 QFLEWLKSSEKHASIPIIMLTARADLGDKLRALRTGVDDYLVKPFVEAELLARIQNLLQR 1223

Query: 121  QKSKD 125
            Q+ + 
Sbjct: 1224 QQLRR 1228


>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis
           JLW8]
 gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+++    ++++        G     A S   A +   +E +P+ +++D  + G+  L
Sbjct: 4   NILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLM-RETVPDLILLDWMLPGMNGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ +  L    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  ELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
           12D]
 gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
 gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  I G  +GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+VD    +R V      + G+ V EA    EA +   K      +++D  M  + 
Sbjct: 1   MNTILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAI-KTTSIQLVILDVMMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++   + ++  +  L  + +    I G   GA+ +++KPFN   L   ++   + 
Sbjct: 60  GIRACLKIREI-SNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRR 118

Query: 121 QKSKDENQF 129
           Q    + +F
Sbjct: 119 QALIGKEEF 127


>gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 247

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLILLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 239

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A +  EA    E E  P+  V+D  +  +  F
Sbjct: 12  RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAE-EHNPDLAVLDVMLPDMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  + G   G + ++ KPF+ + +   +R + +  +
Sbjct: 71  TVTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 123 SKDEN 127
             D++
Sbjct: 131 PMDDD 135


>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 238

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A            +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQSSEE 128


>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
 gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
          Length = 238

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A            +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQSSEE 128


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+      +    +    GF V  A     A    E+    + +++D  + G  
Sbjct: 1   MTRLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGA-DLVLLDVMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ      V V  L         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRALRQKSS---VPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVL 116

Query: 119 QMQKSK 124
           + + S+
Sbjct: 117 RRRGSE 122


>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ +       F++ EA +  +A E        + +++D  + G+ 
Sbjct: 4   MARILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDY-DIILLDLMLPGMD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L  + +    + G  AG + +++KPF+   + + ++ + + 
Sbjct: 63  GIEVCQRVRE-FKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRR 121

Query: 121 QKSKD 125
             +  
Sbjct: 122 SSATA 126


>gi|17232371|ref|NP_488919.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134016|dbj|BAB76578.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 407

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD      KV   + N  GF V  A +   A     +E LPN +++D  M G+  
Sbjct: 7   NSVLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKV-QETLPNLILLDVMMPGMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H++  P   D+ V ++    D    + G + GA  ++ KP   E +   +    +
Sbjct: 66  FETCRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLE 125

Query: 120 MQKSK---DENQFLDAI 133
           +++++    + + + ++
Sbjct: 126 LRRTQLKLAQEEKMSSL 142


>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
 gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
          Length = 243

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++        G+ V  A++  EA     KE  P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKE-YPSLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    +    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RSEIAA 125


>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 236

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R + R    D G+ V EA    E     E   + + +++D  + G  
Sbjct: 1   MKTILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTV-DLIILDLMLPGED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         +  L    D    I G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GLALCRTIRAR---QTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIF 116

Query: 119 QMQKSKDENQ 128
           +  + +++ Q
Sbjct: 117 RRSEQQNQAQ 126


>gi|170077528|ref|YP_001734166.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC
           7002]
 gi|169885197|gb|ACA98910.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC
           7002]
          Length = 376

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L++D    +R +        G+ V  A+      +       P+ ++ D  M  + 
Sbjct: 1   MPQILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIA-TRPDLIISDWMMPEMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    V+Q P  +  F   L      E  + G  AGA+ FL KP +   L   +R   
Sbjct: 60  GIEVCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISSHELEARVRSGL 119

Query: 119 QM----QKSKDENQFLDA 132
           ++    Q    + + L++
Sbjct: 120 RICRLTQDLTAQKRALES 137


>gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 282

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A     A E    E  P+ +++D  +     
Sbjct: 46  RRILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEK-PDLILLDLMLPVKDG 104

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    VR      +  +  L  +      + G   GA+ ++ KPF    L   ++   +
Sbjct: 105 MDVCREVR---GKLNTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLR 161

Query: 120 MQ 121
            Q
Sbjct: 162 RQ 163


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A     A E  E E  P+ +++D  +  +  
Sbjct: 3   KKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAEN-PDLIILDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 122 KSKD 125
            +  
Sbjct: 121 ATLK 124


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+VD    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD    +R++     +  G+ VF A    EA E  +++  P+ +V+D  M      
Sbjct: 14  SILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQH-PDLIVLDVMMPRLDGY 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    +    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 73  GVCRAIRK---TSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRR 129


>gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 379

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            +LL+VD       +        GF V  A     A +  E    P+ +++D  M G   
Sbjct: 9   KTLLIVDDIPANVSLLLDFLTKAGFKVLVAKDGESALKKTEYAH-PDLILLDVMMPGLSG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++      ++ + ++    +    + G   GA  ++ KP   E +   +    +
Sbjct: 68  FEVCKILKSKEETKNIPIIFMTALSETVDKVKGFSLGAVDYITKPIQHEEVLARVTTHLK 127

Query: 120 MQKSKDENQ 128
           +++ + + +
Sbjct: 128 LRQLQRQLE 136


>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD    +R++     +  G+ VF A    EA E  +++  P+ +V+D  M      
Sbjct: 14  SILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQH-PDLIVLDVMMPRLDGY 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    +    + G   GA+ +++KPF+ + L   +R + + 
Sbjct: 73  GVCRAIRK---TSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRR 129


>gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain [Bradyrhizobium sp. BTAi1]
          Length = 1299

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L D +  +R   R L     + V        A E   +   P+ ++ D  M G+  F
Sbjct: 646 RVVLADDNPDMRDYVRRLLGQ-DYEVEAVGDGGAALEAMRR-RRPDLVLTDVMMPGMDGF 703

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P   D+ V  L      E  + G  AGA+ +L KPF+   L   +R    +
Sbjct: 704 GLLQAMRSDPRLRDIPVVMLSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRANIDL 763

Query: 121 QKSKDE--------NQFLDA 132
            + + E        N+ L+A
Sbjct: 764 ARVRREAETTLRELNERLEA 783



 Score = 94.9 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61
            ++L+V+ +  + +    L  D G+    A S  +A    +      + ++ D  M G+  
Sbjct: 1173 NVLVVEDNPEIGEFSTQLLEDLGYRTVLARSGIDALRMLDDNPKRFDLVLSDVVMPGMDG 1232

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                         + +       D   +  G R G +  + KP++ + L   +R++   +
Sbjct: 1233 VTLGQEIRRRLPTIPIVLNSGYSDV--LADGGRHGFS-LIHKPYSVDELSRVLRQVMAGR 1289

Query: 122  KSKDEN 127
             +  E 
Sbjct: 1290 ATSSEQ 1295


>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD   ++ K  R      G+ V  A    EA     KE   + +++D  +  +  
Sbjct: 3   NRVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMA-KENTYDIILLDLMLPKMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LDVCQQIRE---FSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILR 118

Query: 120 MQKSKDENQ 128
             +  ++ +
Sbjct: 119 RARKPEKAE 127


>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R++ R      G+++ EA     A +        + +++D  + G+  
Sbjct: 6   NRILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDY-SIILLDVMLPGMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ        V  L  + +    + G   GA+ +++KPF+   + + ++ + +
Sbjct: 65  IEVCTRLRQ---TKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+     R    +     G+ V  A +  EA E   +    + +++D  + G  
Sbjct: 1   MTRILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     +DV V  L  + D    + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRRLRLD---SDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVL 116

Query: 119 QMQKSKDE 126
           + + +   
Sbjct: 117 RRRDTSAR 124


>gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 266

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F   +A+   EA +    + +P+ +++D  + G   
Sbjct: 38  KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREA-QAVIADCVPDLILLDWMLPGTSG 96

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 97  LELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMR 156

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 157 RTRDDDED 164


>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 224

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H     GF ++EA +  +A    +  +  + +++D  M  + 
Sbjct: 1   MPRILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDT-VKVDLVILDIMMPEID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R+     D+ +  L ++ +    + G   GA+ +L+KPF+   L   ++ L 
Sbjct: 60  GWQLCHNIRK--YYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 RRYQ 121


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+++    +  + ++     G++V  A    E  E    E+ PN +++D  +     
Sbjct: 3   KTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAI-EIQPNLILLDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +  +  +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKQIRQQRM--NTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
 gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
 gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
           J1-023]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A            +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQSSEE 128


>gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobulbus propionicus DSM 2032]
          Length = 460

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD    +R+  + L    G+ V  A     A E  EK    + ++ D  M G+ 
Sbjct: 3   MASILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEK-TAFDLVITDIRMPGMS 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   L  D+ V  +      +  +   ++GA  ++ KPFN + ++  +R + + 
Sbjct: 62  GLDLLARLKQLQADIGVIMITAFASPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVLKK 121

Query: 121 Q 121
           +
Sbjct: 122 R 122


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R      G+ V  A++  E  +    E  P+ +V+D  M  V  F
Sbjct: 4   RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSED-PDVVVLDVMMPQVDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R    G+   V  L  + + E  + G   GA+ +L+KPF  E L   +R L + +
Sbjct: 63  EALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRK 121


>gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V   T+   A E    E  P+ +V+D  + G+   
Sbjct: 5   RILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVE-RPDLIVLDLMLPGMDGL 63

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     ++ +  L  + +   ++ G   GA+ ++ KPF+ + L   +R + + 
Sbjct: 64  EVAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRR 123

Query: 121 QKSK 124
           + ++
Sbjct: 124 KATE 127


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RSEMAA 125


>gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
 gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
          Length = 232

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A+   +A +  +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLDAS--VDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQNF---QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQKQ 125


>gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 1002

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD +  +R     L ++  + V  A +   A E   ++ LP+ ++ D  M  +  F
Sbjct: 647 RILLVDDNADMRDYVGRLLSER-WQVETAANGAIALERL-QQDLPDLVLTDVMMPEMDGF 704

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  PL   + V  L         IAG  AGA+ +L+KPF+   L   +    QM
Sbjct: 705 QLLQVLRSDPLTQSIPVILLSARAGEVATIAGLAAGADDYLIKPFSARELIARVETQLQM 764

Query: 121 QKSKDEN 127
            + + E 
Sbjct: 765 SRLRQEE 771


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LLV+    +  +  +     GF V       EA    + E LP+ +++D  + G   
Sbjct: 24  TRILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLD-ESLPDLVLLDWMLPGVSG 82

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R       + +  L    +  + I G   GA+ +++KPF+   L   +R L +
Sbjct: 83  LEICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLR 142

Query: 120 MQK 122
             +
Sbjct: 143 RSR 145


>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    ++++        GF+   A+   EA +   ++  P+ +++D  +      
Sbjct: 4   KILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQI-RDYAPDLILLDWMLPSTSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      DV +  L    D    + G  +GA+ ++ KPF+   L   +R + + 
Sbjct: 63  VLAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRR 122

Query: 121 Q 121
            
Sbjct: 123 H 123


>gi|302866838|ref|YP_003835475.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503253|ref|YP_004082140.1| response regulator receiver modulated diguanylate cyclase
           [Micromonospora sp. L5]
 gi|302569697|gb|ADL45899.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409872|gb|ADU07989.1| response regulator receiver modulated diguanylate cyclase
           [Micromonospora sp. L5]
          Length = 318

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    + +         GF V  A    EA E  E++  P+  V+D  M     LE
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGFEVLHAADGQEALEVIERQ-RPDLAVVDLMMPRIDGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P+ + + V  L  +   +  + G   GA+ +L+KPF+   L   +    +  
Sbjct: 70  LTRRLRADPMTSALPVIMLTAKGMTQDKVNGLSVGADDYLVKPFDTLELVARVNSTLRRN 129

Query: 122 KSKDE 126
           K   E
Sbjct: 130 KEFRE 134


>gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
          Length = 970

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++V+    +R     L     + V EA +  + R+   +E  P+ ++ D  M  +   
Sbjct: 599 RIMVVEDDPEIRSFLARLLAQH-YRVMEAINGDDGRQRALRE-RPDLILSDVMMPVMSGL 656

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P   D+ V  L    +    + G   GAN +L KPF+   L   +    ++
Sbjct: 657 QMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNELLARIETQLRL 716

Query: 121 QKS---KDENQFLDAI 133
           +++     EN+ L AI
Sbjct: 717 REAAVRAAENERLAAI 732


>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 233

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA +       P+ +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHI-FHPDLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + +    + G   GA+ +++KPF+ + L   +R + +
Sbjct: 64  YQVCREIR---HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
 gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  R      G  V  A    EA E   K    + +++D  +    
Sbjct: 1   MAKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEY-DMVLLDVMLPKHD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +D+ +  L  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GYEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIM 116

Query: 119 QMQKSKDENQ 128
           +      +N+
Sbjct: 117 RRSGKNRKNR 126


>gi|189468013|ref|ZP_03016798.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM
            17393]
 gi|189436277|gb|EDV05262.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM
            17393]
          Length = 1451

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R     + +   + V EA +  E  E   +E +P+ ++ D  M  +   
Sbjct: 1191 SILIVEDNMELRSFLHTILS-ENYKVIEAINGQEGLERA-QEHVPDLIISDIMMPVMDGL 1248

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119
              + ++++      + +  L  +   +  I+G   G + ++ KPF+   L+  ++ L  Q
Sbjct: 1249 DMVKNIKENREICHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSATYLKARIKSLLHQ 1308

Query: 120  MQKSKD 125
             ++ +D
Sbjct: 1309 RKQLQD 1314


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR+  R      G+ V  A    +A E  E+E  P  +++D  M  + 
Sbjct: 1   MK-VLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREH-PEIVILDVMMPRMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         +  L    +    + G  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLRSQGDDRS--ILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLV 116

Query: 119 QMQKSKDEN 127
           +    +  N
Sbjct: 117 RRSAVESNN 125


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    ++ +        G+    A+    A +       P+ +++D  +  +   
Sbjct: 5   RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAH-PDLIILDLMLPRMDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + +  L    D   ++ G   GA+ ++ KPF+   L   +  L + 
Sbjct: 64  EVCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123

Query: 121 QKSKDENQFL 130
            +  +E + +
Sbjct: 124 TRMTEETRQI 133


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+     R+V  +     G+ V +  S  E      +E +P+ +V+D  +  +  +E
Sbjct: 6   ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGL-LLARENVPDLIVLDWMLPEMSGIE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               V+       + +  L    +    + G   GA+ ++ KP++ + L   ++   +  
Sbjct: 65  VCRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRT 124

Query: 122 KSKDENQFLD 131
           +       LD
Sbjct: 125 RPAALGAQLD 134


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +  +        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L      +  I G  +GA+ +L KPF+ E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|220908072|ref|YP_002483383.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
 gi|219864683|gb|ACL45022.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
          Length = 392

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL+D   I++++ +    + G+ V  A+S     E   K   P  ++ D  MEG+    
Sbjct: 11  ILLIDDDRILQRILQKTLQEQGYDVSLASSGEAGLELV-KHTHPQLIICDWLMEGMDGLE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P     F   L      E  + G   GA+ FL KP +   L   +R   ++ 
Sbjct: 70  VCQRIKTDPDLDHPFFILLTSRSAVEDRVQGLNTGADDFLSKPIDPSELIARVRAGLRLY 129

Query: 122 KSKDENQFLD 131
           +S  E + L 
Sbjct: 130 QSNQELKQLA 139


>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis CS]
          Length = 232

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    ++++     +  G  V  A    +A+     E LP+ +++D  + G   L
Sbjct: 4   TILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAE-LPDLILLDWMLPGASGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V V  L  +   +  + G  AGA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  SLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  +  +D
Sbjct: 123 RAPQLTDDIID 133


>gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
 gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      + LP+ +++D  + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLV-DPLPDLVLLDWMIPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+++     DV V  L    + E  + G   GA+ +L+KPF+ + L   ++ + +
Sbjct: 62  IQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    +  + R      G+ V  A    E  +   +   P+ L++D  M  +  
Sbjct: 3   QRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSD-PDLLILDVMMPQMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    R    G+ V V  L    D +  + G   GA+ +L+KPF  E L   +R L + +
Sbjct: 62  WEVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRK 121

Query: 122 KSKDE 126
             + E
Sbjct: 122 PDRQE 126


>gi|332297564|ref|YP_004439486.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Treponema brennaborense DSM 12168]
 gi|332180667|gb|AEE16355.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Treponema brennaborense DSM 12168]
          Length = 338

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L  D S  +R+    L   + + V    S  EA E        + +++D  M G+  +
Sbjct: 7   KILCADDSTSIRQYLTGLLTSWNYDVTACASGTEALEAYRTYSEYSVVLLDWIMPGMTGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R        ++  L  +   E ++    AGA+ +L+KPF+   L+  ++   ++
Sbjct: 67  DVCRQIRAADKQGYTYIIMLTSKDSTENIVEALNAGADDYLIKPFHPAELQARIQTAFRI 126

Query: 121 QKSKDENQFLD 131
            + + + +  +
Sbjct: 127 YQYEQKLKRTE 137


>gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 249

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V  A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKG-QALAVQLQPDLVMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ +  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 218

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +     
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +DV + +L  + +    + G R G + +++KPF+   L   M  + +   
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYT 117

Query: 123 SKDENQFLD 131
            +++ + + 
Sbjct: 118 KQEQQEEIQ 126


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ VF A    EA +    E+ P+ +++D  +  +  
Sbjct: 3   KKILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQV-NEVDPDLIILDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D  +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVA-REVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++  + F + G+ V   +   EA      E +P+ +++D  +EG   +
Sbjct: 15  KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEAL-LLAAEDVPDLVILDWMIEGTSGI 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L      +  I G   GA+ +L KPF+   L   +  + + 
Sbjct: 74  EVCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRR 133

Query: 121 QK 122
            +
Sbjct: 134 IR 135


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLV+     R++  +     GF V  A +  EA      E LP+ +++D  M     +E
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAI-LLVAEALPDLIILDWMMPLLSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126

Query: 122 K 122
           +
Sbjct: 127 R 127


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E EL P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQ 121
            Q
Sbjct: 119 RQ 120


>gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          ++    GF V  A +   A    ++    + +++D  +  + 
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGA-DIVLLDLMLPEMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V +  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    ++K+ +       + V  A +  EA +   KE     +++D  M  +  +
Sbjct: 5   KILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   + V V  L    +    + G   GA+ ++ KPF+ + L   +  L +   
Sbjct: 65  T-ALKTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSG 123

Query: 123 SKDENQFLD 131
            + E + L+
Sbjct: 124 VQKE-ELLE 131


>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ +       + + EA +  EA +   +    + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDY-DLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
 gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
          Length = 243

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++        G+ V  A++  EA     ++  P+ +V+D  M      
Sbjct: 7   KILVVDDEASIRRILETRLTIIGYEVITASNGEEAL-LVFRKEYPSLVVLDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    +    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 66  GVCQELRKE---SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122


>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 230

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++         +   EA    EA      +  P+ +++D  + G   
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREA-HALIVDKHPDLVLLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     D+ +  L  +V+ +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  VELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|298385028|ref|ZP_06994587.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298262172|gb|EFI05037.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1450

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  ++   +++ +   + V  A +  E  +      +P+ ++ D  M  +   
Sbjct: 1192 TILVVEDNEELKAFLKNILS-ENYTVITAPNGKEGLQHAVDN-IPDLIISDVMMPVMDGL 1249

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      + +  L  +   +  IAG   G + ++ KPF+   L+  +  L + 
Sbjct: 1250 EMIRKIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQ 1309

Query: 121  QKSKDE 126
            +KS  E
Sbjct: 1310 RKSLQE 1315


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RSEIAA 125


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +      G+ V  A     A+E       PN +V+D  + G+   
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMMLPGIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++V V  L  + +    +     GA+ +++KPF  + L   ++ + +   
Sbjct: 66  -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 123 SKDEN 127
            ++ +
Sbjct: 125 GEEPD 129


>gi|90409613|ref|ZP_01217630.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
 gi|90328966|gb|EAS45223.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
          Length = 241

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V  A    E +        P+ +++D  M G   
Sbjct: 5   KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRL-ASGYPDLILMDVMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    ++R+    +DV +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLR 120

Query: 120 MQK 122
             K
Sbjct: 121 RVK 123


>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  147 bits (373), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + +    + G+ + EA++  EA      E   + +++D  M  +
Sbjct: 1   MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEAL-ILINENNFDLIILDVMMPVL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A ++       + + +L  + +    I G   GA+ ++ KPF    L   ++   +
Sbjct: 60  DGISACLKIREDY-TMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLR 118

Query: 120 MQK 122
             K
Sbjct: 119 RYK 121


>gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 234

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+    + ++ R       F    A +  +A EF   +L P+ +V+D  +     L
Sbjct: 2   NILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFF-GQLQPDVIVLDIMLPELDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P   D ++  L    +    I G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  EVCTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120


>gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 244

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++        GF V  A    E       +  P+ +++D  M G   
Sbjct: 9   KQLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNE-MRKLLAQHNPDLIILDIMMPGDDG 67

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    D    + G   GA+ ++ KPF+   L+  ++ L +
Sbjct: 68  FTLCQQIRRD---SQVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLR 124

Query: 120 MQKSKDENQ 128
             + +   +
Sbjct: 125 RAEFRQPEK 133


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A      E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRIM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDE 126
             K +DE
Sbjct: 120 RTKLQDE 126


>gi|330962192|gb|EGH62452.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 245

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V               E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGA-GFRQAFNEASSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+VD    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|172038635|ref|YP_001805136.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700089|gb|ACB53070.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 377

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD +    ++   + ++ G+ V +A +   A      ++ P+ +++D +M  +   
Sbjct: 7   NILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTI-HQVAPDLILLDINMPSMNGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ + ++    D    +     G   ++ KPF  E +   +     +
Sbjct: 66  EVCQQLKDDPDTKDIPIIFISALDDVLDKVKAFELGGVDYITKPFQAEEVIARIENQLTI 125

Query: 121 QKSKDENQF 129
           Q+ K + Q 
Sbjct: 126 QRQKKQLQQ 134


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +    D G+ V  A          E     + LV+D  + G+  
Sbjct: 3   KRILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRW-DALVLDLMLPGIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 62  LEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRT 121

Query: 122 KSKDENQFLDA 132
            + + N  LDA
Sbjct: 122 DALERNARLDA 132


>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
 gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
 gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
           LL3]
          Length = 240

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ R       +++ EA +  EA +        + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDY-DLVLLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCRQLREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +    + G+    A+   EA +   KE  P  +++D  + G+   
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIA-KEERPKLILLDVMLPGMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  +    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 123


>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
 gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
          Length = 229

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V  +     GF V  A +  EA      E  P+ +V+D  M     +E
Sbjct: 8   VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAM-MLVDETAPDLIVLDWMMPNLSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 67  VCRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRRV 126

Query: 122 KSKDENQFLD 131
           +       L+
Sbjct: 127 RPAATGGQLE 136


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +RK+ R      G++V EA     A +        + +++D  M  +  
Sbjct: 3   NKILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR++     V +  L  + + +  + G   G + ++ KPF+ + L   +  L +
Sbjct: 63  WQLCKEVRKLSK---VPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59
           M  +L+V+    +R+         G+ V EA S   A +  E+     +  ++D  M G+
Sbjct: 1   MKRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGI 60

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+     ++ +  L  +      + G   GA+ ++ KPF+   L   +  L
Sbjct: 61  DGLTVCKELRKKSG--NLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSL 118

Query: 118 PQM---QKSKDENQFLDAI 133
            +     + ++EN F + +
Sbjct: 119 YRRVAIAEMREENNFQEEL 137


>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
 gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
          Length = 230

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++         +   EA    EA      +  P+ +++D  + G   
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREA-HALIVDKQPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     ++ +  L  +V+ +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  VELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+++    +  + ++     G++V  A    E  E    +L PN +++D  +     
Sbjct: 3   KTILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAI-DLQPNLILLDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +  +  +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKQIRQQRM--NTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++   +    G+ V  +     A E   + L P+ +++D  + G+   
Sbjct: 9   RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPR-LRPDLVLLDLMLPGMDGI 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D   ++ G  AGA+ +L KPF  E L   ++   + 
Sbjct: 68  EVCRRLRRESG---VPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRR 124

Query: 121 QKSKDENQF 129
            +     Q 
Sbjct: 125 SEEPTTEQL 133


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + +V        G+      +  EA      +  P+ +++D  + G   +
Sbjct: 7   KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVF-GDFKPDLVLLDIMLPGVDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+      + V  L  + D    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  EVLKWIRKSSE---IPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRR 122

Query: 121 QKSKDEN 127
               ++N
Sbjct: 123 YNYDEKN 129


>gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
 gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
          Length = 233

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+    ++++        G  V  A    +A +      LP+ +++D  +     L
Sbjct: 4   TILVVEDEPAIQELISVNLTFAGHKVLRALDAQQA-KILIDAELPDLILLDWMLPTTSGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ +  L  +      + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  SLARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 235

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +  +        G+ V  A    +A E  E   LP+ +++D  +      
Sbjct: 5   RILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAET-TLPDLVILDLMLPKLDGW 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + +  L    D + ++AG   GA+ +L KPF+   L   ++   + 
Sbjct: 64  EVCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRA 123

Query: 121 Q 121
           +
Sbjct: 124 R 124


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    +  + R    + G+ V    +  EA    E  L P  LV+D  + G+
Sbjct: 1   MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLE-HLEPALLVLDVRLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +      D+ V  L    D E  + G RAGA+ +L KPF  E L   +  L +
Sbjct: 60  DGVEVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLR 119

Query: 120 MQKSKDENQFL 130
             K +     L
Sbjct: 120 RSKRQPTRHLL 130


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score =  147 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    +RK+ R       + V EA++  EA +   +    + +++D  M  
Sbjct: 7   MKQLKILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPK 66

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R++     V +  L  + +    + G   G + ++ KPF+   L   +  
Sbjct: 67  MDGWEACREIRKISK---VPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDA 123

Query: 117 LPQMQKSKDENQFLDA 132
           + +   +  ++Q   A
Sbjct: 124 ILRRTNNIGQDQIEQA 139


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++  +     G+ +  A    +A     +   P+ +++D  + G+  F
Sbjct: 31  KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTY-RLFKPSLVILDVMLPGIDGF 89

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L         + G  AGA+ +L KPF    L   M+ L + 
Sbjct: 90  ELCRLIRTESS---VPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146

Query: 121 QKSKDEN 127
            ++++  
Sbjct: 147 SQTQNSQ 153


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +      G+ V  A     A+E       P+ +V+D  + G+   
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPSLVVLDMMLPGIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++V V  L  + +    +     GA+ +++KPF  + L   ++ + +   
Sbjct: 66  -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 123 SKDEN 127
            ++ +
Sbjct: 125 GEEPD 129


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++        G+    +    E  E   + L P+ +++D  + G+L
Sbjct: 1   MPVILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANR-LQPDLILLDLMLPGML 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + + V  L    +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GTDVCKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ R       + + EA +  EA      E   + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITK-GLEANYDLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCRQIREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 229

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         +    A    EA +    + +P+ +++D  + G   
Sbjct: 3   KQILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREA-QAAIADRVPDMILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE     R+  L  +V +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 122 RSREDDED 129


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     GF+V  A    +A E    E +P+ +++D  + G   +E
Sbjct: 3   VLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDA-ELLLAERIPDLVLLDWMLPGLSGIE 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + V  L    +    + G   GA+ +++KPF+   L   +R L +  
Sbjct: 62  LCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121

Query: 122 KSKDENQFLDA 132
           K    +  L A
Sbjct: 122 KPAHVSDRLAA 132


>gi|168069753|ref|XP_001786566.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660993|gb|EDQ48622.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 717

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD   +  +V R+L    G+ +  A++  EA E  +     + ++ D  M G+  L
Sbjct: 401 TVLMVDDDPVNLQVLRNLLALEGYRLMTASNGQEALEKIQSGQSIDLVIADWMMPGMSGL 460

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR+    + + +  L      E +  G  AGAN FL KP + E LR  +R L ++
Sbjct: 461 DLCRSVRRQFSLSALPILLLTARSLPEDVRIGLSAGANDFLRKPVDAEELRARVRTLLEL 520

Query: 121 QKS-----KDENQFLDA 132
           ++S       E  FL A
Sbjct: 521 RRSVRNAISAEMAFLQA 537


>gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1177

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R      G  V  A     A     +E  P+ +V+D  +  +  F
Sbjct: 2   KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRET-PDLIVLDIGLPEMDGF 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +DV V +L    D    I G   GA+ ++ KPF+   +   +  + + 
Sbjct: 61  EVCRRLRAR---SDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRR 117


>gi|260223180|emb|CBA33484.1| hypothetical protein Csp_B19290 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 396

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +R+  + +    GF V  A    EA    +    P+ ++ D  M G+  F
Sbjct: 14  KILIAEDEPSLRENLQWMLELEGFEVLAACDGLEALAMAQTHK-PDLVLTDVMMPGLDGF 72

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P  + + +  L    D      G   GA+ +L KP  RE L  A+    + 
Sbjct: 73  GLVKALRENPGSSTLPIIMLTARADRTDTRTGMNLGADDYLTKPCRREELLEAVHARLER 132

Query: 121 QKSKD 125
            + + 
Sbjct: 133 SRIQQ 137


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++  H +  + R      G++V  A S  E  +       P+ +++D  +  +   
Sbjct: 7   RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNP-PDLVILDLMLPEMSGE 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+  L  D+ +  L  +   E  IAG  AGA+ ++ KPFN E L   +R   + 
Sbjct: 66  EVCRRLRE-GLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRR 124

Query: 121 QKSKDE 126
           ++ +++
Sbjct: 125 RQPQEK 130


>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
 gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +      G++V EA    +A +   ++   + +++D  M  +  +
Sbjct: 15  KVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDGW 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   + V V  L  + D    + G   G + ++ KPF+ + L   +  + +   
Sbjct: 75  -ETLKEIRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTS 133

Query: 123 SKDENQFLDA 132
                + L A
Sbjct: 134 DAASEERLSA 143


>gi|254247533|ref|ZP_04940854.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
 gi|124872309|gb|EAY64025.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
          Length = 256

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 16  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 74

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 75  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 134

Query: 120 MQKS 123
            +++
Sbjct: 135 RRRA 138


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R+V      + G+ V EA    EA    + E   + +V+D  M  +   
Sbjct: 5   RVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESW-DLIVLDVMMPKMDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     V +  L  + D    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  TVCQEIRKVSK---VPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRR 120

Query: 121 QKSKDENQ 128
             ++++ +
Sbjct: 121 VGTEEKKE 128


>gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
 gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           metschnikovii CIP 69.14]
          Length = 1139

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  E   KE  P  L++D  M G+    
Sbjct: 734 LLIADDEPVNLRVLDSFLRLEGYRVRTALDGHEVIEAIAKEK-PELLLLDVMMPGMSGYQ 792

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + +  L      +  I G  AGAN +L KPFN++ L   ++      
Sbjct: 793 VCEQLREQYDHAQLPIIMLTALTQSDDRIRGFAAGANDYLSKPFNKQELAARIKAHL--S 850

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 851 ASKAEQRRIE 860


>gi|254251724|ref|ZP_04945042.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
 gi|124894333|gb|EAY68213.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
          Length = 256

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 16  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 74

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 75  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 134

Query: 120 MQKS 123
            +++
Sbjct: 135 RRRA 138


>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 232

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+      N  G++V EA S  EA +   K L P+ +V+D  + G+  F
Sbjct: 7   KILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKL-KMLDPDIVVLDIMLPGIDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      +  V  L         I G   GA+ +++KPFN   L   ++ + + + 
Sbjct: 66  EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125

Query: 123 SKDENQF 129
              E + 
Sbjct: 126 GPKETKQ 132


>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 235

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +R++ +      GF V  A++  EA E        + +V+D  +    
Sbjct: 1   MGKILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN--IDLVVLDLMLPEID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + +  L  + +  + I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 59  GMEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIF 118

Query: 119 QMQKSKDENQ 128
           +  +    ++
Sbjct: 119 RRMEELKLDK 128


>gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1177

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SQ 120


>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA3]
 gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA2]
 gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL097PA1]
 gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL099PA1]
 gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
          Length = 232

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    VR+         G+ V  A    EA         P+ +++D  M  +    
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A       G DV +  L      +  + G  AGA+ +++KPF  + L   +R L +  + 
Sbjct: 64  ATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123

Query: 124 KDEN 127
           + E 
Sbjct: 124 EPEQ 127


>gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1177

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   ++R           ++V        A E  EK    + +++D  +  +  
Sbjct: 6   KKILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKH-AFDLVILDLMLPKLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++V +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 65  ERVCRAIR---DTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFR 121

Query: 120 MQKSK 124
              S+
Sbjct: 122 RTYSE 126


>gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1177

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|120434408|ref|YP_860117.1| two-component system sensor histidine kinase/response regulator
            hybrid [Gramella forsetii KT0803]
 gi|117576558|emb|CAL65027.1| two-component system sensor histidine kinase/response regulator
            hybrid [Gramella forsetii KT0803]
          Length = 1352

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +RK    L   +   V E  +  EA E    +  P+ ++ D  M  +   
Sbjct: 1107 SILIVEDNKEIRKYISGLLKPY-CRVIEVENGKEALEEI-TQNQPDLIISDIMMPIMDGV 1164

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L       + + G   GA++++ KPFN E L   ++ L + 
Sbjct: 1165 SLTRKLKTSTETSHIPVILLTARATSIQRMEGYETGADAYITKPFNEEMLMIRIKNLLRN 1224

Query: 121  QKSKDE 126
            +    E
Sbjct: 1225 RNLLQE 1230


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score =  147 bits (372), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD  H +  + ++     G+ V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESE-QPDLIILDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    VR       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             +   E + +D
Sbjct: 120 RSQFVKEVEEID 131


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+    VR V R      GF V  A    +A E     + P+ +++D  +       
Sbjct: 6   ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTA-VNPDLVILDIMLPKKDGWS 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V +  L  + +    + G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 65  VCREIRRQTA---VPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRS 121

Query: 122 KS 123
            +
Sbjct: 122 NA 123


>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
 gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           Finland 1988]
 gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           R2-561]
 gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           10403S]
 gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           J0161]
 gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
 gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
 gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J2-003]
 gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
 gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
 gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
 gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 238

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A            +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQSSEE 128


>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E+  +    + +++D  +  +  
Sbjct: 3   KKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARR-CEYDLVLLDVMLPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FQVCQQIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDEN 127
               + E 
Sbjct: 119 RTAKRKEE 126


>gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +         D G+   +A +  E  +   +  + + +++D  M  +   
Sbjct: 7   TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKV-DLVLLDVMMPEMDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++     + V  +  + D    + G R+GA+ +++KPF+ + L   +    +   
Sbjct: 66  -EALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNY 124

Query: 123 SKDENQFLDAI 133
             ++++  + +
Sbjct: 125 GYNDDESKEEL 135


>gi|119511790|ref|ZP_01630892.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463563|gb|EAW44498.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 378

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    ++ + + +    G+ V  A++  E          P  ++ D  M G  
Sbjct: 1   MFQILVIDDDISIQTLLKRMLEKQGYKVVAASNGEEGIAQAIA-YQPALVICDWIMPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P  +  F  +L         + G  AGA+ F+ KP  +  L+  +R   
Sbjct: 60  GLEVCKRMKTDPNLSTTFFIFLTSLDSIADRVKGLDAGADDFISKPIEQNELKARVRAGL 119

Query: 119 QMQKSKDEN 127
           ++ +   + 
Sbjct: 120 RLHQLSQDL 128


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  +  +  +  G+ V  A    EA      E  P+ +++D  +     +E
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLA-SERAPDLVILDWMLPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +V +  L    +    I G   GA+ +++KPF+   L   +R + +  
Sbjct: 64  VCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 238

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  +  + P+ +V+D  +     
Sbjct: 3   QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDA-VQPDLVVLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RSQQ 123


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E EL P+ +++D  +     
Sbjct: 4   KKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVE-ELQPDLILLDIMLPNKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQ 121
            Q
Sbjct: 120 RQ 121


>gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184]
 gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184]
          Length = 1348

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             ++LL D +  V +      +   ++V +A +  EA    E E  P+ ++ D  M  +  
Sbjct: 1097 QTVLLADDNQEVLQYLEQQLS-LDYIVVKAFNGKEALAMIE-ESYPHIVISDIMMPEMNG 1154

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            LE    +++      + V  L  +    ++  G  AGA+ +++KPF    L+  +R L  
Sbjct: 1155 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLLS 1214

Query: 120  MQKSKDEN 127
            +++     
Sbjct: 1215 LREKMKTM 1222


>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
 gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
          Length = 230

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++         +   EA    EA      +  P+ +++D  + G   
Sbjct: 4   KQVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQK-PDLILLDWMLPGVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +EF   +++    +++ +  L  + + +  + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IEFARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++  +     GF +  A       +   K   P+ +++D  + G++
Sbjct: 1   MQTVLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAK-PDLILLDLMLPGMM 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++       + +  L  + +    + G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GTEVCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVL 119

Query: 119 QMQKSK 124
           +    +
Sbjct: 120 RRSSEQ 125


>gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152]
 gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + ++  +   + G+ VF A +  EA +  +K   P+ +++D  M  +   
Sbjct: 7   KILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNT-PHLILLDIMMPEMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++    +V + +L    +    +AG  AGA+ ++ KP   + L   ++ L + 
Sbjct: 66  EACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIKSLLRR 125

Query: 121 QKSKDENQ 128
            KS++E++
Sbjct: 126 LKSEEESE 133


>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
 gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++     R+V  + F   G+ V  A +   A     +E  P+ +V+D  + G   +E
Sbjct: 8   ILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEP-PDLIVLDWMLPGVSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  L    +    + G   GA+ ++ KP++   L    R   +  
Sbjct: 67  ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRRT 126

Query: 122 K 122
           +
Sbjct: 127 R 127


>gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661]
 gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A      +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLI--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQF 129
           +     ++ Q 
Sbjct: 116 RRSNWSEQQQQ 126


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59
           M  +L+ +    +R+         G+ V +     +A +  E E    + +++D  M G+
Sbjct: 1   MKRILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    +     + + +  L         ++G   GA+ ++ KPF+   L   +  + +
Sbjct: 61  DGFTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
 gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 243

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        GF V  A     A          + +V+D  M G    
Sbjct: 10  KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGK-ALNRLLLRETVDIIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
           +++
Sbjct: 129 AQE 131


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++  + F + G+ V   +   EA      E +P+ +++D  +EG   +
Sbjct: 5   KLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEAL-LMASEDVPDLVILDWMIEGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L      +  + G   GA+ +++KPF+   L   +  + + 
Sbjct: 64  EVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRR 123

Query: 121 QKSKDENQFLDA 132
            +     + + A
Sbjct: 124 IRPALAGETIQA 135


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++   + GF    A +  EA    E   + + +V+D  +     
Sbjct: 3   KRILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEAS-MYDLIVLDLMLPEVDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R   +  +  +  L  + +    + G   GA+ +L KPF+ + +   ++ + +
Sbjct: 62  MEVCRTLRMNQV--NTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RSQL 123


>gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
 gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus VM223]
          Length = 1177

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  E  ++E  P  L++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
 gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM573]
          Length = 1177

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  E  ++E  P  L++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
 gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V  +     GF+V  A    EA      E+ P+ +V+D  +     +E
Sbjct: 8   VLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEAL-MLIDEVAPDVIVLDWMLPNVSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +      ++ +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 67  VCRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRV 126

Query: 122 KSKDENQFL 130
           +     Q L
Sbjct: 127 RPTTMGQVL 135


>gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis
           Et1/99]
 gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A      +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALL--DNTVDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQQQ 125


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLV+     R++  +     GF V  A +  EA      E LP+ +++D  M     +E
Sbjct: 8   ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAI-LLVAEALPDLIILDWMMPLLSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126

Query: 122 K 122
           +
Sbjct: 127 R 127


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A +  +A    E    P+  V+D  +  +  F
Sbjct: 12  KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELH-APDLAVLDVMLPDMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L  + D E  + G   G + ++ KPF+ + +   +R + +  +
Sbjct: 71  TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130


>gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++        G+ + +AT   +A    E  + P+  ++D  M  + 
Sbjct: 1   MAKILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEA-VRPDMAIMDIMMPRMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D+ +  L  + +    +     GA+ +L+KPF+   L   ++ L 
Sbjct: 60  GWALCEALR-DSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 KRYK 122


>gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1355

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LLV+ +  +  +  ++ +   + V  A++  EA +   K+   + ++ D  M  +    
Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRV-KDNDIDIVISDVMMPRMDGLE 1165

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +  I    AGA+ ++ KPF  + L   +      +
Sbjct: 1166 LCRRLKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFLTNK 1225

Query: 122  KSKDEN 127
            K + + 
Sbjct: 1226 KDRQKE 1231


>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G+ V EA    EA +   ++     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR       V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREVRMHSK---VPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
                 ++ +DA
Sbjct: 122 TNVFAADEVVDA 133


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    + ++  +   + G+ V       EARE  +     + +V+D  + G  
Sbjct: 1   MARVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKY-DIIVLDLMLPGVN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    VR   +  D  +  L    D +  + G  AGA+ ++ KPF+ + L   +  + 
Sbjct: 60  GLDLCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVL 119

Query: 119 QMQKSKDENQF 129
           +     +  +F
Sbjct: 120 RRAGYSEVLEF 130


>gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
          Length = 236

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  E    P+ +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELS-QPDLIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             +  +E +  +
Sbjct: 120 RSQFVNEVEQSE 131


>gi|260221594|emb|CBA30315.1| hypothetical protein Csp_C22930 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 433

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     + + L  D  + V  A +   A +    E  P+ +++D  M G+   
Sbjct: 59  TVLVVDDTPENLLLMQSLLRD-DYKVKGANNGERALKIVAGEAPPDLILLDIMMPGMDGY 117

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V +L  +   E    G   GA  ++ KP +   +   +R    +
Sbjct: 118 EVCRRIKADPKARHIPVIFLTAKSQTEDEAFGLSLGAADYITKPISPPIVLARVRNQLAV 177

Query: 121 QK----SKDENQFLDA 132
           +      +D+N+FL++
Sbjct: 178 KASADFLRDQNEFLES 193


>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
 gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         EA    E    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFES-YQPNLMLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +  +  L  + +    + G   GA+ ++LKPF+ + L   ++ + +
Sbjct: 64  YQVCREIRSK---HNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         EA    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFD-NYSPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +D  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAK---SDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDEN 127
             ++  + 
Sbjct: 121 RYQAPRQE 128


>gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +R++   +    GF    A    +A +    E LP+ +++D  + G   +
Sbjct: 5   NILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDA-QKALDEALPDLILLDWMLPGVSGV 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E+   +++ P+  ++ +  L    + E  + G   GA+ ++ KPF+ + L   +R + + 
Sbjct: 64  EWARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRR 123


>gi|237799889|ref|ZP_04588350.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806381|ref|ZP_04593085.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022744|gb|EGI02801.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027494|gb|EGI07549.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 245

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       +       E   + L++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEASSDLLILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|198274045|ref|ZP_03206577.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135]
 gi|198273123|gb|EDY97392.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135]
          Length = 1367

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R      F D  + V  A +  E  +    E +P+ +V D  M  +    
Sbjct: 1098 ILVVEDNADIRDYIADSFTDL-YEVKTAANGKEGLQIA-TECIPDIVVSDIMMPVMNGIM 1155

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  +        G +AGA+S+L KPF+   L+  +  L   +
Sbjct: 1156 MCQKLKADMRTSHIPVILLTAKDSITDKEEGYQAGADSYLTKPFSASLLQSRISNLLTQR 1215

Query: 122  KSKDE 126
            +   E
Sbjct: 1216 RLLSE 1220


>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
 gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
          Length = 249

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E+  +    + +++D  +  +  
Sbjct: 24  KKILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYA-RNCEYDLVLLDVMLPKLDG 82

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ V  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 83  FQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 139

Query: 120 MQKSKDE 126
               ++E
Sbjct: 140 RTAKREE 146


>gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR
           [Edwardsiella tarda FL6-60]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L +  GF V  A    +A    +     + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDAS--IDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQFLDA 132
           +     ++ Q  D+
Sbjct: 116 RRSNWNEQQQNSDS 129


>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
 gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D    + ++ R      G+ V  A    EA      E  P+ +++D  M  +   
Sbjct: 5   KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAE-APDLILLDIMMPKLDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D  +  +  + +    + G   G++ +++KPF+ + +   ++ + + 
Sbjct: 64  QVCREIRKK---SDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRR 120

Query: 121 -QKSKDEN 127
             KS  EN
Sbjct: 121 ASKSSAEN 128


>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 248

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A    EA   C +E  P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVVTACDGTEALT-CFQECEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
            + ++
Sbjct: 126 VEKEN 130


>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CFBP2957]
          Length = 237

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  I G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 237

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ +       + V +A +   A +    +   + +V+D  M G+   
Sbjct: 6   RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKAL-DYDYDLIVLDLMMPGMDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L + 
Sbjct: 65  EVCEKIRKQ---KATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|158521788|ref|YP_001529658.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Desulfococcus oleovorans Hxd3]
 gi|158510614|gb|ABW67581.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfococcus oleovorans Hxd3]
          Length = 465

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +   +    G+ V  A +  +A E   K+   ++++ D  M  +  
Sbjct: 9   KNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQP-FDFILCDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                 +     D  V  +      +  +   + GA  ++ KPF  + +  A+++  + +
Sbjct: 68  LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERE 127

Query: 122 KSKDEN 127
           + K EN
Sbjct: 128 RLKREN 133


>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++        GF    A     A      E  P+ +V+D  +  V  
Sbjct: 3   QRILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTE-RPDLMVLDLMLPDVDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R  P    + +  L   VD    I G   GA+ ++ KPFN   +   +R + +
Sbjct: 62  ADLTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
 gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+V+    +R++        GF   +A+ V +A      +  PN +++D  +  
Sbjct: 1   MKNETILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQA-HHLVVDHRPNLILLDWMLPN 59

Query: 59  V---LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               ++    +++  + +++ +  L  + + +  + G  AGA+ ++ KPF+   L   ++
Sbjct: 60  GLSGIDLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIK 119

Query: 116 ELPQMQKSKD 125
            + +   +  
Sbjct: 120 AVLRRSSALS 129


>gi|254411506|ref|ZP_05025283.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182007|gb|EDX76994.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 419

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L VD    V+ + + L    G  V  A     A +   +E  P+ ++ D  M    
Sbjct: 1   MAKILAVDDDITVQIILQELLESEGHDVLLADDGEAALQK-TQEFQPDLIICDWMMPKLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P    +F+  + +       + G  +GA+ FL KP     L+  +R   
Sbjct: 60  GLELCRRIKADPQLATIFLILITIREQVADRVQGLDSGADDFLSKPIEPSELQARVRSGL 119

Query: 119 QMQKSKDEN 127
           ++++   + 
Sbjct: 120 RLRQLNQQL 128


>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
 gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
          Length = 240

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ +       + + EA +  EA +   +    + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDY-DLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCNQIR---DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +     GF V  A++  +A E  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  L  +      + G   GA+ ++ KPF+   L   MR + 
Sbjct: 60  GTEVCRELRAR---SNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGDAEE 124


>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 247

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  V R      GF V  A     A      E  P+ +++D  + G+  
Sbjct: 16  RRILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLA-AERHPDLVLLDRMLPGLDG 74

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      V V  L      +  I G   GA+ ++ KPF+   L   +R + +
Sbjct: 75  VEVCRRLRQ---TMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLR 131

Query: 120 M 120
            
Sbjct: 132 R 132


>gi|54303563|ref|YP_133556.1| putative DNA-binding response regulator [Photobacterium profundum
           SS9]
 gi|46916994|emb|CAG23756.1| putative DNA-binding response regulator [Photobacterium profundum
           SS9]
          Length = 241

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V  A    E +        P+ +++D  M G   
Sbjct: 5   KKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRL-AGGYPDLILMDVMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    ++R+    +DV +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQYIRK---TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLR 120

Query: 120 MQK 122
             K
Sbjct: 121 RVK 123


>gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
 gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus 12B01]
          Length = 1129

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V  A    E  E  EKE  P  L++D  M G+      
Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEK-PELLLLDIMMPGMSGYQVC 785

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R+      + +  L      E  + G  AGAN +L KPFN++ L   +        S
Sbjct: 786 EALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL--SAS 843

Query: 124 KDENQFLD 131
           K E + L+
Sbjct: 844 KAEQRRLE 851


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    VR+V R    D G+ V E         +   E  P+ +V+D  + G+   
Sbjct: 6   RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGL-WWAVEHAPDAVVLDLMLPGMDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L    + E  + G + GA+ +++KPF+   L   +  + + 
Sbjct: 65  QVCRELRARR--PQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRR 122

Query: 121 QKSKD 125
              + 
Sbjct: 123 SAPEA 127


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  EKE  P+ +V+D  +     
Sbjct: 3   QRVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQK-EKETKPDLIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKN--QVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
                D  +
Sbjct: 120 RSSLVDHVR 128


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    + ++        G+ V +A    EA +  E     +  ++D  + G+  
Sbjct: 4   KSILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNET-DMFIVDIMLPGMDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    ++R         V +L  + +    + G   GA+ ++ KPF+   +   +R + +
Sbjct: 63  FELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFR 122

Query: 120 MQKSKDENQ 128
             +   + +
Sbjct: 123 RIQQSAQAK 131


>gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
 gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
          Length = 945

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD +  +R     +     F V  A +  E  E   K   P+ +V D  M     L
Sbjct: 594 TVLVVDDNPDLRTYVARILRQANFSVVLARNGAEGLEMA-KSDDPDVIVTDLMMPVVSGL 652

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + I  +R+  +     V  L  + D +  I G   GA+++L KPFN   L   +R L  +
Sbjct: 653 DLIRMIREDDVLKGTPVILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLVAL 712

Query: 121 QKSKDENQFLD 131
           ++++   Q L+
Sbjct: 713 KQNERRVQQLN 723


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E  +     + +++D  +  +  
Sbjct: 3   RKVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEY-DIILLDLMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LEVCQQIRE---FSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIR 118

Query: 120 MQKSKDENQ 128
              SK + Q
Sbjct: 119 RAGSKQDKQ 127


>gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis
           HI4320]
 gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320]
 gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  AT   +A +  +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLDAS--IDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQNF---QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQKQ 125


>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
 gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
 gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 237

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G     A +  +A      ++LP+ +++D  + G    
Sbjct: 4   SILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  I G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          ++    GF V  A +   A    ++    + +++D  +  + 
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGA-DIVLLDLMLPEMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V +  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 227

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          ++    GF V  A +   A    ++    + +++D  +  + 
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGA-DIVLLDLMLPEMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V +  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQR---SYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QMQKSKD 125
           + Q ++ 
Sbjct: 117 RRQSTEA 123


>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
 gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
          Length = 238

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A            +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQSSEE 128


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A+  CEA +  + +   + +++D  M  +   
Sbjct: 5   TILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQ-QVHLIILDIMMPNMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  EACIKIRE-HKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRR 120


>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 229

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    +R++ +   +  G+ V EA  V  A+     E  P+ +++D  +     L
Sbjct: 4   KILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLL-EDPPDLILLDWMLPDTSGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           ++   ++  P+  D+ +  L    + E  + G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  DWARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRR 122


>gi|17231256|ref|NP_487804.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132898|dbj|BAB75463.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 369

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD +     + + +    G+ +  A+    A +  E+   P+ +++D  M G+   
Sbjct: 11  RILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSP-PDLILLDVMMPGMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P  + + +  +        ++ G   GA+ F+ KPF+ + L   +R L ++
Sbjct: 70  EVTRRIRNNPALSYIPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLRL 128

Query: 121 QKSKDENQFLD 131
           + S DE + + 
Sbjct: 129 KHSLDEQKKMA 139


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ LL++D   +  K  +    + GF V  A    E  +        + +++D  +  + 
Sbjct: 1   MERLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNY-DLVILDIMLPKLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +++ +  L    +    I G   GA+ +L KPFN   L   +R L 
Sbjct: 60  GFSVCREIR---TFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF VF A       E   +E  P+ +V+D  + G+   
Sbjct: 5   RLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREK-PDLVVLDLMLPGMSGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++MP   +  V  L    +    I G   GA+ +++KPF+   L   ++ + + 
Sbjct: 64  DVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKR 123

Query: 121 QKSKDENQ 128
                E +
Sbjct: 124 GAPFTEQE 131


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +  V        G+ V ++    +  +    +L P+ +++D  +  V
Sbjct: 1   MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQG-QALAVQLSPDLILLDLMLPQV 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+ P   D+ +  L         + G  AGA+ +L KPF  E +   +R L
Sbjct: 60  DGFTICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRAL 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
 gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
          Length = 232

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A +  +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDSS--IDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ+       V  L         + G   GA+ +L KPFN   L   +R L 
Sbjct: 59  GIETLKELRQI---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQTQ 125


>gi|119490895|ref|ZP_01623178.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Lyngbya sp. PCC 8106]
 gi|119453713|gb|EAW34872.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Lyngbya sp. PCC 8106]
          Length = 379

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D   ++R++ R      G+ V  A++  E  E   K L P  ++ D  M    
Sbjct: 1   MFKILVIDDDTVIRELLRRTLKKQGYDVSVASNGEEGIEKA-KVLRPALIICDWIMPRLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    V+  P  +    + L         + G  AGA+ F+ KP     L   +R   
Sbjct: 60  GIEVCRQVKDNPELSTTQFFLLTSLGSISDRVKGLDAGADDFISKPLEMNELYARVRAGL 119

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 120 RLHQLSQDLQTQKQLLE 136


>gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus
           elongatus PCC 7942]
 gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus
           elongatus PCC 7942]
          Length = 235

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLVD    +R+  +    D GF V  A +  E  E   ++  P+ ++ D  M      +
Sbjct: 10  ILLVDDEPGLREAVQAYLEDSGFRVRTAANAQEGWEQL-QQARPDLVITDVMMPRVDGYQ 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+A +R       + V  L         I G  AG + ++ KPF+ + L   +  L + +
Sbjct: 69  FLAQLRGDDRFKALPVILLTARGMTGDRIQGYEAGCDDYIAKPFDPDELVVRVENLLRRR 128

Query: 122 K 122
           +
Sbjct: 129 R 129


>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 230

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +  H +R          G+ V EA +  EA ++ E++   + L++D  M  V 
Sbjct: 1   MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQT-FDILLLDIMMPEVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       V +  L      E  + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 60  GFAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRR 119

Query: 121 QKSKDENQF 129
            ++    + 
Sbjct: 120 VETLRRRKQ 128


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD  H +  + ++     G+ V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENE-QPDLIILDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    VR       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             +   E + +D
Sbjct: 120 RSQFVKEVEEID 131


>gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
 gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
          Length = 232

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A +  +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDSS--IDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ+       V  L         + G   GA+ +L KPFN   L   +R L 
Sbjct: 59  GIETLKELRQL---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQTQ 125


>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
          Length = 228

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+     R V  +     GF V +A +  EA    E+E  P+ +V+D  +     +
Sbjct: 6   TVLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEET-PDIIVLDWMLPAVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 65  EVCRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 124

Query: 121 QKSKDENQFL 130
            +     Q L
Sbjct: 125 VRPATVGQQL 134


>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
           Clip81459]
 gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J2-064]
 gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J1-175]
 gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
           1816]
 gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
           220]
 gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
           str. Scott A]
          Length = 238

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A            +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---FKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQSSEE 128


>gi|153870406|ref|ZP_01999815.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073131|gb|EDN70188.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 358

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD      KV        GF V  A S   A         P+ +++D  M      
Sbjct: 8   TILVVDDIPTNIKVLFDYLKSIGFKVRIAKSGEHALAQIALSP-PDLILLDVMMPKIDGF 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ V ++  + +    + G   GA  ++ KPF +E +   +     +
Sbjct: 67  EVCRRLKADVKTREIPVIFMTAKTETVDKVKGFEVGAVDYVTKPFQQEEVLARINAHLTI 126

Query: 121 QK----SKDENQFLDA 132
           +K     +  NQ LDA
Sbjct: 127 RKLQNSLQQHNQELDA 142


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   ++ K  +      G+ V       EA E        + +++D  M  + 
Sbjct: 12  MK-ILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGG-FDLIILDLMMPKID 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R     ++V +  L    +    I G   GA+ ++ KPFN   L+  +R L + 
Sbjct: 70  GLQACMRIRE-FSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRR 128

Query: 121 QKSKDENQ 128
                + +
Sbjct: 129 AGMAAQKE 136


>gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 227

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          ++    GF V  A +   A    ++    + +++D  +  + 
Sbjct: 1   MSRVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGA-DIVLLDLMLPEMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V +  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GSEVCRQLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRK 119


>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +       + V  A    EA +   KE   + +++D  + 
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KETSFHLIILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 60  KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 228

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   + +V+    +  + ++      + VF + +  E  +  +K + P+ +++D  +   
Sbjct: 1   MKAKIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKK-IEPDLILLDWMLPDL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +++      + +  L  +   E  + G   GA+ +L+KPF+   L   +  L
Sbjct: 60  SGIEICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINAL 119

Query: 118 PQMQKSKD 125
            +  K + 
Sbjct: 120 LRRVKPQA 127


>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 243

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++LLV+    +     +     G+    A     A E   +E  P+ +++D  +     
Sbjct: 11  KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E   H+R+     DV V  +  +      + G   GA+ +++KPF+   L   +R L +
Sbjct: 71  TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130

Query: 120 MQKSKDEN 127
             +   +N
Sbjct: 131 RTERPADN 138


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            +L+VD    + +V +      G+ V  A     A+E       PN +V+D  + G+   
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMMLPGIDRM 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+    ++V V  L  + +    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  EVLKWIRKD---SNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122

Query: 121 QKSKDEN 127
              ++ +
Sbjct: 123 YSGEEPD 129


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R          G+ V        A E  EK    + +V+D  +  +  
Sbjct: 6   KKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKH-QFDLVVLDLMLPKIPG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + + E  I G   GA+ +L+KPF+   L   +R L +
Sbjct: 65  ERVCRTIR---DTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFR 121

Query: 120 MQKSKDE 126
                DE
Sbjct: 122 RAHQADE 128


>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 230

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++         +   EA    EA      +  P+ +++D  + G   
Sbjct: 4   KTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALII-DKQPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     D+ +  L  +V+ +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  VELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+VD    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Acidovorax ebreus TPSY]
 gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 235

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    A     A+   +  +LP+ +++D  + 
Sbjct: 1   MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L+     R       + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ L++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAEN-PDILILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ + + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD   ++ K  R      G  V  A    EA E   KE   + +++D  +     
Sbjct: 3   KRVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKA-KEKEYDMILLDIMLPKLTG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+    + V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LEVCQQIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
             + ++  +
Sbjct: 119 RMRKEEAKE 127


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ L++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAEN-PDILILDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ + + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F          A      E  P+ +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAV-TEFRPDLMILDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+     ++ +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREVRRN---NNLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDENQFLDA 132
             +    +   DA
Sbjct: 121 RYQQPKADTAADA 133


>gi|323495068|ref|ZP_08100157.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
 gi|323310725|gb|EGA63900.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
          Length = 240

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V       + +   E++  P+ +++D  + G   F
Sbjct: 4   KILVVDDDQEICELLEEYLTKQGYQVDAVNDGEQMKATLEQQGYPDLILLDVMLPGDDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+      V +  L    D    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 64  TLCQQVRRHSS---VPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLRR 120

Query: 121 QKSKDEN 127
               +E 
Sbjct: 121 VNVSEEL 127


>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    + ++     N  G+   E  +   A E  E    P+ +++D  +    
Sbjct: 1   MLKILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFES-FYPDLVLLDVMLPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R+        +  L  + +    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 60  GYDVCKEIRKQ---HRTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  146 bits (371), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + ++ +H     GF    +     A +    E  P+ +++D  + G+    
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMF-HERPPDLIILDLMIPGLDGLE 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +RQ P   D ++  L  + +    + G   GA+ +++KPF+   L   +R L +  
Sbjct: 62  VCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121

Query: 122 -KSKDENQ 128
            +   +NQ
Sbjct: 122 LRQGGQNQ 129


>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 223

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    + ++     +  G+   +  S   A ++ E     + +++D  M  + 
Sbjct: 1   MYTILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKA-DLVLLDIMMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+    +DV +  +        ++ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWETCKRIRE---FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+++    +  + ++     G++V  A    E  E    ++ PN +++D  +     
Sbjct: 3   KTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAI-DIQPNLILLDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +  +  +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKQIRQQRM--NTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF A +  EA +  + E   + +++D  M  +   
Sbjct: 2   NILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSES-IDLVLLDIMMPFMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  +++   +DV +  L  + + +  + G + GA+ +++KPF+ + L   +    +  K
Sbjct: 61  EAA-QEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A +  EA    +    P+  V+D  +  +  F
Sbjct: 12  KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHS-PDLAVLDVMLPDMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L  + D E  + G   G + ++ KPF+ + +   +R + +  +
Sbjct: 71  TVTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130

Query: 123 SKDEN 127
             +++
Sbjct: 131 PLEDD 135


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A     A +  E E +P+ +++D  +  +  
Sbjct: 3   KKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVE-EDVPDLVILDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVA-REIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 122 KSKDENQ 128
            +    Q
Sbjct: 121 NTAAHAQ 127


>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 236

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R + R      GF V EA     A      E  P+ +V+D  M  + 
Sbjct: 1   MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEK-PDLVVLDLMMPEMG 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R     +   V  L  +++    I G   GA+ ++ KPFN   L   +R + + 
Sbjct: 60  GY-EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118

Query: 121 QKS 123
            + 
Sbjct: 119 TQQ 121


>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 235

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    A     A+   +  +LP+ +++D  + 
Sbjct: 1   MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L+     R       + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD  H +  + ++     G+ V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENE-QPDLIILDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    VR       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             +   E + +D
Sbjct: 120 RSQFVKEVEEID 131


>gi|300866673|ref|ZP_07111359.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335347|emb|CBN56519.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 425

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V         + V  AT   +A    E+   P  +++D  M  +  F 
Sbjct: 9   ILIVDDNTTNLSVLSQALKAAQYKVRMATDGEDALAQVERHH-PELILLDIEMPNMDGFE 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + + ++    D EK + G   GA  ++ KPF    +   ++   +++
Sbjct: 68  TCRRLQANPTTQGIPIIFMTSLADTEKKVKGLSLGAVDYITKPFEASEVLARIKVHWRLK 127

Query: 122 KSKDENQF 129
           +  D  + 
Sbjct: 128 QLTDSLER 135


>gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 227

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + + +    +  + ++     G  V    +  EA +   K+  P+ +++D  +  +    
Sbjct: 5   VFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQI-KDKQPDLILMDWMLPDLSGVD 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              ++++     D+ +  L  + + E  +     GA+ ++ KPF+++ L   ++ L +  
Sbjct: 64  ICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRS 123

Query: 122 KSKD 125
           K + 
Sbjct: 124 KPQS 127


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    VR++     +  G+ V  A+   EA    E+E  P+ +V+D  +      
Sbjct: 15  KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQE-APDLIVLDVMLPKLDGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +DV +  L    D    I G   GA+ +L KPF+ + L   +  + + 
Sbjct: 74  GVCRELRKL---SDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRR 130


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ LL++D   +  K  +    + GF V  A    E  +        + +++D  +  + 
Sbjct: 1   MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNY-DLVILDIMLPKLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +++ +  L    D    I G   GA+ +L KPFN   L   +R L 
Sbjct: 60  GFSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALL 116

Query: 119 QMQ-----KSKDENQF 129
           +       K KDE + 
Sbjct: 117 RRATNPYTKRKDEIRR 132


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 1/125 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +  +      F V  AT+  +A    E     + +++D  +  + 
Sbjct: 1   MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHY-DIVLLDLMLPEMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      D  V  L  +      + G   GA+ ++ KPF+   +   +  + + 
Sbjct: 60  GEEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119

Query: 121 QKSKD 125
            +  +
Sbjct: 120 YEKSE 124


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A     A E  E E  P+ +++D  +  +  
Sbjct: 9   KKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAEN-PDLIILDLMLPKIDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 68  LEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 126

Query: 122 KSKD 125
            +  
Sbjct: 127 ATLK 130


>gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 598

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +     +   +    G+ V EA     A E      LP+ +++D  M  +    
Sbjct: 14  ILIVDDTPGNLHLLSRILRKKGYQVREAIDGKTALEEV-NNKLPDLILLDIMMPDIDGYT 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   +V + +L    D    +    +G   ++ KPF  + +   ++    ++
Sbjct: 73  VCNQLKSDPNTAEVPIIFLSALDDIFDKVKAFESGGVDYISKPFQFQEVLIRVKNQLTLR 132

Query: 122 KSKDENQFLD 131
           +++ + Q L+
Sbjct: 133 RTQQQLQILN 142


>gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
          Length = 225

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA    EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|224371412|ref|YP_002605576.1| putative chemotaxis response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694129|gb|ACN17412.1| putative chemotaxis response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 396

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+LLVD   +  +V  H     G  +  A +   A    +K   P+ +++D  M G+  F
Sbjct: 24  SILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKA-RPDLILLDIMMPGIDGF 82

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V +L    D    + G + GA  ++ KPF  E +   +     +
Sbjct: 83  EVCRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQPEEVIARVNTHLTI 142

Query: 121 QKSKDENQF 129
            +   E Q 
Sbjct: 143 HRLSREVQQ 151


>gi|254476369|ref|ZP_05089755.1| response regulator receiver modulated serine phosphatase [Ruegeria
           sp. R11]
 gi|214030612|gb|EEB71447.1| response regulator receiver modulated serine phosphatase [Ruegeria
           sp. R11]
          Length = 423

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA S   A E C  +  P+ ++ D  M G+  
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICLADP-PDLILSDWMMPGMNG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R+       +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 78  LEFCRAFREQSKDNYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 138 ILRMQRELSEKNRI 151


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A    E R+   +E +P+ +++D  +     
Sbjct: 3   KKILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEE-VPDLMILDLMLPKIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +   + +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQIRQQKVM--IPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILR 119

Query: 120 MQKS 123
             ++
Sbjct: 120 RSQA 123


>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
 gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
 gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
 gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ +       + + EA +  EA +        + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDY-DLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR         +  L  + +    + G   G + +++KPF+   +   ++ L +
Sbjct: 66  IEVCRQVR---DKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|186681898|ref|YP_001865094.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464350|gb|ACC80151.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 374

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD +     + + +    G+ +   +   +A    EK   P+ +++D  M G+   
Sbjct: 11  RILAVDDTRDNLILVQAILESEGYEIDLVSDGIKALRQVEKSP-PDLILLDVMMPGMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P  + + +  +        ++ G  AGA+ F+ KPF+ + L   +R L ++
Sbjct: 70  EVTRRIRNNPAISYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLRL 128

Query: 121 QKSKDENQFL 130
           + S DE Q +
Sbjct: 129 KHSLDEQQKM 138


>gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1199

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD      +V   L    G+    A +   A   C     P+ +++D  M      E
Sbjct: 13  ILIVDDQPDNLRVLSALLRKRGYECRRAINGQLALRACNSNP-PDLILLDIVMPVVDGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V +L  + +  + +    AG   ++ KPF+ E +   +     MQ
Sbjct: 72  VCKQLKSGEKTCDIPVIFLSAKGEVFEKVKAFAAGGADYISKPFHSEEVLARVEHQLTMQ 131

Query: 122 KSK----DENQFLDA 132
           + +    ++NQ L A
Sbjct: 132 RLQKQLKEQNQILQA 146



 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD + I R + R+L    GF + EA    E       E  P+ +++D  M  +  
Sbjct: 970  RKVLVVDDNQINRDILRNLLEPLGFEIIEAADGKECLNKAV-EFKPDVILMDLVMPVMDG 1028

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
            F     +R +P   D+ +  +         +     G+++FL+KP   +
Sbjct: 1029 FEATRRLRYLPELKDIVLLAISASAFDNTKLDFLLGGSDNFLIKPIEVK 1077


>gi|150003546|ref|YP_001298290.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931970|gb|ABR38668.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1378

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+    +R   R LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 1118 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKE-IPDLVITDVMMPVMNGF 1175

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L   
Sbjct: 1176 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI-- 1233

Query: 121  QKSKDENQFL 130
             KS+ E + +
Sbjct: 1234 -KSRTELKRI 1242


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1014

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLL D +  +R   R + +   F V        A E      +P+ ++ D  M      
Sbjct: 652 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARA-CVPDLILTDVMMPRLDGF 709

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ PL   V V  L      E  + G  AGA+ +++KPF+   L   +    ++
Sbjct: 710 GLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARVCSTLEL 769

Query: 121 QKSKDENQFLDA 132
            + + E+   +A
Sbjct: 770 SRMRRESSLQEA 781


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K  R      GF V  A+   EA          + +V+D  + GV 
Sbjct: 1   MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGD-FDLIVLDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR   +     +  L  + D    I G   GA+ ++ KPFN   L   +R + 
Sbjct: 60  GLTICREVRAAGM---TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVL 116

Query: 119 QMQKSKDENQF 129
           +  ++      
Sbjct: 117 RRAEAASRQDR 127


>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ +  A+   EA + C  E   + +++D  M    
Sbjct: 1   MPKILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSED-FDVIIMDVMMPDTD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  +++    D+ V  L         + G   G + ++ KPF+   L   ++ +   
Sbjct: 60  GFTAC-KKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSH 118

Query: 121 QKSKDE 126
            ++ ++
Sbjct: 119 SRNAEQ 124


>gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001]
 gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + +VD    +R++ +    D G+ V    +  +      +   P+ +V+D  + G    
Sbjct: 6   RIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQ-LTARLESQRPDLVVLDLMLPGDDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D+ V  L  + D    I G   GA+ +L KPF    L   +  + + + 
Sbjct: 65  CLLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRG 124

Query: 123 S 123
           S
Sbjct: 125 S 125


>gi|84387714|ref|ZP_00990730.1| Response regulator [Vibrio splendidus 12B01]
 gi|84377397|gb|EAP94264.1| Response regulator [Vibrio splendidus 12B01]
          Length = 242

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V       E     + +  P+ +++D  + G   
Sbjct: 5   TRILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     ++V +  L    D    I G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  FTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123

Query: 122 K 122
           +
Sbjct: 124 Q 124


>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
 gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 240

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++      D G+ +  A          EK    + L++D  + GV  
Sbjct: 5   KKILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 64  LEICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123

Query: 122 KSKDENQFLDA 132
           ++   N  +DA
Sbjct: 124 EAMSRNLKMDA 134


>gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 230

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      G+ V  A    EA +   K++ P  +++D  +  +  
Sbjct: 3   KKVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKA-KDIKPGLILLDLMLPIMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + +R+     D  +  L  +   +  I G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  TKVCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTR 121

Query: 120 MQKSKDE 126
              +  +
Sbjct: 122 RYAAPSQ 128


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        G+ V  A    EA      E  P+ +++D  +  +  F
Sbjct: 11  RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEK-PDLVILDVMLPDMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ + +L  + D    + G +AG + ++ KPF  E +   +  + +  K
Sbjct: 70  TVTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129

Query: 123 SKDENQFL 130
                Q L
Sbjct: 130 RSAVEQPL 137


>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R++ + L  + GF V EA    EA    E  +  + +++D  M  + 
Sbjct: 1   MNKILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLET-IKVDMVILDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +  L  + +  + + G + G + +L+KPF    L   ++ L 
Sbjct: 60  GWQLCRELREH---YDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYQ 120


>gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 251

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++         F         EA      E  P+ +++D  + G   
Sbjct: 5   QRILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVP-EYRPDLIILDLMLPGIDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R       V V  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YEVCRRLRMRSS---VPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVL 116

Query: 119 QMQKS 123
           +  + 
Sbjct: 117 RRNQM 121


>gi|75907784|ref|YP_322080.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701509|gb|ABA21185.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 369

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD +     + + +    G+ +  A+    A +  E+   P+ +++D  M G+   
Sbjct: 11  RILAVDDTKDNLILVQTILESEGYEIDLASDGISALQKVEQSP-PDLILLDVMMPGMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P  + V +  +        ++ G   GA+ F+ KPF+ + L   +R L ++
Sbjct: 70  EVTRRIRNNPALSYVPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLRL 128

Query: 121 QKSKDENQFLD 131
           + S DE + + 
Sbjct: 129 KHSLDEQKKMA 139


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD  H +  + ++     G+ V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   QKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESE-QPDLIILDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    VR       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IDVCKTVRTNKNL--VPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             +   E + +D
Sbjct: 120 RSQFVKEVEEVD 131


>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 247

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK+  +  +  G+ V  +     A +    E   +++++D  +  + 
Sbjct: 1   MKKVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLA-SEKNFDFIILDLMLPSMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ  +  +  +  L  + D  + I G   GA+ ++ KPF+   +   M+ + 
Sbjct: 60  GMDVCKQLRQDKV--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAIL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 RRSR 121


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + R    D G+ V  A    E     E E   + LV+D  + G+  
Sbjct: 15  RRVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLE-EGDWDALVLDLMLPGIDG 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   +R L +  
Sbjct: 74  LEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRS 133

Query: 122 KSKDENQFLDA 132
            + + N  +DA
Sbjct: 134 SAIERNARIDA 144


>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 238

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ +       + V EA +  +A      E+  + +++D  M G+   
Sbjct: 6   KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLAL-EIDYDLILLDIMMPGMDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 65  EVCQELRK---TKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|159897248|ref|YP_001543495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890287|gb|ABX03367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 531

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 7/133 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD       V + +    G+    A S  EA    E++ +P+ +++D  M  +    
Sbjct: 8   ILIVDDQTTNVMVLQRMLERAGYATACARSGFEALTMLEQQ-VPDLILLDVMMPEMDGYQ 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
            +  +R+      + + ++  +      + G   GA+ ++ KP NR+ L   MR L +  
Sbjct: 67  TLQAIRERNHLPFIPIIFVSAKQTTADTVTGLDLGADDYVTKPVNRDELLARMRVLLRLK 126

Query: 120 --MQKSKDENQFL 130
              +    E + L
Sbjct: 127 HTRRALHREQERL 139


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
           L+V+    + ++ ++     G+ V  A     A     +E  P+ +++D  +     +E 
Sbjct: 24  LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMAL-LMVEERQPDIVLLDWMLPKLSGIEV 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R      ++ +  L    +    I G   GA+ +++KPF+   L+  +R + +  +
Sbjct: 83  CRRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIR 142


>gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri
           93-146]
 gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Edwardsiella ictaluri 93-146]
          Length = 232

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L +  GF V  A    +A    +     + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILDAS--IDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQFLDA 132
           +     ++ Q  D+
Sbjct: 116 RRSNWNEQQQNSDS 129


>gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 231

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++++    +  +        G+  F A    +  +  + E  P+ +++D  + G+   
Sbjct: 4   KIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSE-RPDLVLLDLMLPGMSGT 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+  P    + +  L    D    I G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122


>gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1361

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R+          +   EA +  EA     KE   + ++ D  M  +   
Sbjct: 1109 SILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNIL-KEQEIDLILTDVMMPVMDGL 1166

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q      + V  L  + D ++ I G + GA+ ++ KPF+   +   +R L + 
Sbjct: 1167 KLCKHIKQNLYTCHIPVIMLSAKTDLKEQIEGLQMGADDYIPKPFSMALVTTKIRNLFRT 1226

Query: 121  QKSKDE 126
            +    E
Sbjct: 1227 RHRAIE 1232


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+         F V EA    EA +   +E   + L++D  M  +  +
Sbjct: 5   KVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++ +   + V V  L    +    + G   GA+ ++ KPF+ + L   +  L +   
Sbjct: 65  -AVLKSIREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSG 123

Query: 123 SKDEN 127
            + E 
Sbjct: 124 IQQEE 128


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score =  146 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+VD    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 232

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    VR+         G+ V  A    EA         P+ +++D  M  +    
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A       G DV +  L      +  + G  AGA+ +++KPF  + L   +R L +  + 
Sbjct: 64  ATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123

Query: 124 KDEN 127
           + E 
Sbjct: 124 EPEQ 127


>gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
 gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TMA 21]
          Length = 1129

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 783 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 840

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 841 ASKAELRRIE 850


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 17  MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 75

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 76  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 132

Query: 117 LPQM 120
             + 
Sbjct: 133 QLRR 136


>gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 234

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + ++ R       F    A S  +A E    +L P+ +++D  + G+   
Sbjct: 2   NILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIF-GQLQPDLIILDLMLPGLDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ P   D ++  L    +    I G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120


>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
 gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
          Length = 229

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+V+     R+V  +     GF V  A +  EA      E  P+ +V+D  M     +
Sbjct: 7   SVLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAM-LLVDEDTPDIIVLDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + V  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPSTVGLRLE 136


>gi|332711421|ref|ZP_08431353.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349970|gb|EGJ29578.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 516

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +++VD S     V   L ++ GF V  A     A +       P+ +++D  M G+  F 
Sbjct: 33  IVIVDDSPTNLGVMFELLSNSGFKVLVAQDGYSALQKVNY-TQPDLILLDIMMPGIDGFE 91

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V +L    D    + G + GA  +L KP  +E +R  +    ++ 
Sbjct: 92  TCRRLKAQESTRDIPVIFLTARTDTLDKVKGFKLGAVDYLTKPVQQEEVRARVNTHLKLG 151

Query: 122 KSKDENQ 128
           + + + Q
Sbjct: 152 RLQKQLQ 158


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A +  EA    E +  P+  V+D  +  +  F
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADE-PDLAVLDVMLPDMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    V +L    D    + G   G + ++ KPF+ + +   +R + +   
Sbjct: 68  TITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127

Query: 123 S-KDEN 127
           S +DEN
Sbjct: 128 SGEDEN 133


>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9605]
 gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9605]
          Length = 245

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +++LP+ ++ D  M      
Sbjct: 20  RLLLVDDEPGLRAAVQAYLEDEGFEVTTAVDGEEGFAKA-QQMLPDVVISDVMMPRLDGY 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 79  GLLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 138

Query: 121 -QKSKDENQFLD 131
            Q+   E     
Sbjct: 139 QQRLLQEAARFA 150


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +  + ++     GF V  A S  EA +  EK    + +V+D  M      
Sbjct: 5   RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEK-RKFDLVVLDIMMPEVSGF 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R+      + V +L    +    + G   G + ++ KPF+   L   +R + + 
Sbjct: 64  DVLRRIREK---IQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRR 120

Query: 121 QK-SKDENQFLD 131
            K S+  N  L+
Sbjct: 121 AKPSEAANTILE 132


>gi|294777639|ref|ZP_06743090.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294448707|gb|EFG17256.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1374

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+    +R   R LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 1114 KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKE-IPDLVITDVMMPVMNGF 1171

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L   
Sbjct: 1172 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI-- 1229

Query: 121  QKSKDENQFL 130
             KS+ E + +
Sbjct: 1230 -KSRTELKRI 1238


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLE-EKEFDLILLDVMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + +  L  + +    I G  +GA+ +L KPFN   L   ++   +  K
Sbjct: 63  EACLKIREE-QTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHK 121


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++++D    + ++        G+ V       +A E   K+   +  ++D  + G+  
Sbjct: 4   RRIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEI-KDKEIDMFLVDIMLPGMDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    ++R         V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FEFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFR 122

Query: 120 MQKSKDE 126
             +   +
Sbjct: 123 RMQLSTQ 129


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    + +  R+     G+ V  A    +  +   ++  P+ +V+D  +  + 
Sbjct: 1   MATVLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRD-QPDLVVLDIMLPRLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ    +DV +  L    D    IAG   GA+ ++ KPF+       +R + 
Sbjct: 60  GFSVCRILRQE---SDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAIL 116

Query: 119 QMQKSK 124
           +  + +
Sbjct: 117 RRSERQ 122


>gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    V  V        G+ V        A      E  P+ +V+D  + G+  
Sbjct: 3   QRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEP-PDLVVLDLMLPGLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R  P G  V +  L    D    + G + GA+ +L KPF+   L   +  + +
Sbjct: 62  LEVCRRLRTKPGG--VPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
 gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
           biprosthecum C19]
          Length = 747

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD + +   +        G+ V  A    EA E       P+ +++D  M  +  F
Sbjct: 12  TILVVDDNPVNLGLVADHLELRGYQVVVALGGNEALERVAFA-RPDLVLLDVMMPDIDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++    D +  +AG  AG   ++ KPF  E L   ++    +
Sbjct: 71  ETCRRLKAQADYKDIPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHLAL 130

Query: 121 QKSKDENQFLDA 132
           +++  + + L A
Sbjct: 131 RRT--QLELLAA 140


>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
 gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
          Length = 238

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA+   +A +          +++D  M G   +
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNY-EVILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCRELRE---FKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 122 AKQNSEE 128


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R      GF V EA    +A E C KE   + +++D  M  + 
Sbjct: 1   MSRILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKED-FDLIIMDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+        +  L    +    I G   G++ +++KPF+ + L   +  + 
Sbjct: 60  GFSACREIRK---FKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVI 116

Query: 119 QMQKSKDENQ 128
           +  +     +
Sbjct: 117 KRSQGAQNEE 126


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    +    R    +  + VF A+S  EA E  +  L P+ +++D  M G 
Sbjct: 1   MREKILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIK--LYPDLILLDIMMPGK 58

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +R +       + +L  + +   ++ G  +G + ++ KPF+   L+  +   
Sbjct: 59  NGYEVCNDIRDI---VSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAH 115

Query: 118 PQMQK 122
            + +K
Sbjct: 116 LRREK 120


>gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
 gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae TM 11079-80]
 gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC9]
 gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae B33]
 gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae BX 330286]
 gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae MJ-1236]
 gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholera CIRS 101]
 gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae RC27]
 gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae INDRE 91/1]
          Length = 1129

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 783 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 840

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 841 ASKAELRRIE 850


>gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae 12129(1)]
 gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae LMA3894-4]
          Length = 1129

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 724 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 783 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 840

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 841 ASKAELRRIE 850


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+LLVD    +  +        GF    AT+  +A     +  +P+ +++D  +    
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRR-RVPDLVLLDVMLPDVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    V V  L  + D    + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GTEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVL 119

Query: 119 QMQKSKDENQFLDAI 133
           +   ++  ++  +++
Sbjct: 120 RRSAARPSDRPPESV 134


>gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + ++ +H     GF    +     A    +++  P+ +++D  + G+    
Sbjct: 3   ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQP-PDLIILDLMIPGLDGLE 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +RQ P   D ++  L  + +    + G   GA+ +++KPF+   L   +R L +  
Sbjct: 62  VCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRS 121

Query: 122 -KSKDENQ 128
            +   +NQ
Sbjct: 122 LRQGGQNQ 129


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E  +     + +++D  +  +  
Sbjct: 3   RKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKY-DIILLDLMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
             +S+ E +
Sbjct: 119 RARSEHEEK 127


>gi|146282783|ref|YP_001172936.1| two-component response regulator GltR [Pseudomonas stutzeri A1501]
 gi|145570988|gb|ABP80094.1| two-component response regulator GltR [Pseudomonas stutzeri A1501]
 gi|327481121|gb|AEA84431.1| two-component response regulator GltR [Pseudomonas stutzeri DSM
           4166]
          Length = 244

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +R++ +   +  GF V       + R     E   + +++D  +     
Sbjct: 6   KNILLVDDDQEIRELLQTYLSRSGFQVRGVPDGAQFRSALCAEPA-DLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ      + +  L    D    + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  FSLCRWIRQHERLASMPIIMLTASSDEADRVVGLELGADDYLGKPFSPRELLARIKALLR 124

Query: 120 MQKSKDE 126
                 E
Sbjct: 125 RVSFAQE 131


>gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio
           splendidus LGP32]
 gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
           MED222]
 gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Vibrio splendidus LGP32]
          Length = 1129

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V  A    E  E  EKE  P  L++D  M G+      
Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEK-PELLLLDIMMPGMSGYQVC 785

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R+      + +  L      E  + G  AGAN +L KPFN++ L   +        S
Sbjct: 786 EALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL--SAS 843

Query: 124 KDENQFLD 131
           K E + L+
Sbjct: 844 KAEQRRLE 851


>gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R   R       + V EA++  EA +   +E LP+ +V+D  M  +  F
Sbjct: 12  TILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRL-REHLPDLVVLDVMMPEMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++ +   + V V  L +    +  I G   GA+ ++ KPF+   L   +R L + 
Sbjct: 71  -ETLKAIREVSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRR 127


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 8   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 66

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 67  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 123

Query: 117 LPQM 120
             + 
Sbjct: 124 QLRR 127


>gi|148976462|ref|ZP_01813168.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3]
 gi|145964285|gb|EDK29541.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3]
          Length = 242

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++        GF V       E     + +  P+ +++D  + G   
Sbjct: 5   TRILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     ++V +  L    D    I G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  FTLCQRVR-RNSNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123

Query: 122 KSKD 125
           +  D
Sbjct: 124 QVVD 127


>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 228

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E+ +     + +++D  +  +  
Sbjct: 3   KRILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKA-CEYDLVLLDVMLPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ V  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDE 126
               + E
Sbjct: 119 RTSKRKE 125


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +  +        GF V  A     A +    E  P+ +++D  +  +  
Sbjct: 3   NRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTE-RPDLIILDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MEVCKELRLQRVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDEN 127
             K ++E 
Sbjct: 120 RTKLQEEQ 127


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF VF A++  EA      E  P+ +V+D  +  +  F
Sbjct: 12  RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREA-TENQPDLVVLDVMLPDMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    + +L  + + +  +AG   G + ++ KPF+ E +   +R + +   
Sbjct: 71  TVTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 130

Query: 123 SKDE 126
              E
Sbjct: 131 GGAE 134


>gi|222054285|ref|YP_002536647.1| response regulator receiver modulated serine phosphatase [Geobacter
           sp. FRC-32]
 gi|221563574|gb|ACM19546.1| response regulator receiver modulated serine phosphatase [Geobacter
           sp. FRC-32]
          Length = 383

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD +    ++   +  +  +    A +   A      + LP+ +++D +M  +   
Sbjct: 5   RILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPDMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ PL  ++ V +L      +  +   +AG   ++ KPF  + ++  +    ++
Sbjct: 64  EVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQFDEMQARVTTHVRL 123

Query: 121 QKSKDENQF 129
           ++ + E + 
Sbjct: 124 RQFQSELEQ 132


>gi|94268821|ref|ZP_01291291.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451451|gb|EAT02291.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 461

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD       +   L  + G+ VF A S  +A E   K+   + ++ D  M G+ 
Sbjct: 1   MQTILVVDDEPNYLVILEELLREEGYEVFCAESGQQALEII-KQSDLDLVITDMRMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D+ V  +    + EK +A  R GA ++L KPF+ + L  ++R+    
Sbjct: 60  GLELLKSSKERNPDLPVIMITAFGEVEKAVAAMRTGAFNYLTKPFDNDELLVSVRQAVDH 119

Query: 121 QKSKDENQFLDA 132
            +   EN  L A
Sbjct: 120 YRVIKENTRLRA 131


>gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 231

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ R   +  G+ V    +  EA +   K   P+ +V+D  + G+  
Sbjct: 4   KHVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKII-KSKQPDLMVLDLMLPGIDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++ P  +++ +  L  + +   ++ G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FEVARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EA    EA    +     +  ++D  + G+ 
Sbjct: 1   MSKVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R       + + +L  +V  +  +     GA+  + KPF+   L   ++ L + 
Sbjct: 61  GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120

Query: 121 QKSKDE 126
                E
Sbjct: 121 VNVYRE 126


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  146 bits (370), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    + ++  +     GF V  A    EA     +E  P+ +V+D  +     +E
Sbjct: 5   VLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAM-MLVEERQPDVVVLDWMLPKISGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      ++ +  L    +    I G   GA+ +++KPF  + L   +R + +  
Sbjct: 64  VCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
 gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +  + +      GF V  A    EA +    E+ P+ +++D  +     
Sbjct: 3   KTILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIA-SEIQPDLMLLDIMLPNRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREIRKKYDF---PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
            Q      +
Sbjct: 119 RQNIAPAEE 127


>gi|299144918|ref|ZP_07037986.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298515409|gb|EFI39290.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1346

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD +   R   R+      + V  A +  EA E  ++E LP+ ++ D  M  +    
Sbjct: 1099 LLIVDDNEDFRIFMRYSLELQ-YRVKLAVNGKEAWEMMQEE-LPDLVISDVMMPQMDGNE 1156

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++Q      + V  L    + E  + G + GA+ ++ KPFN   L   +R+L ++ 
Sbjct: 1157 LCRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIELS 1216

Query: 122  KSKD 125
            +   
Sbjct: 1217 RYHR 1220


>gi|257059714|ref|YP_003137602.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8802]
 gi|256589880|gb|ACV00767.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8802]
          Length = 379

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +  + +      G+ V    +  +      +EL P+ ++ D  M G  
Sbjct: 1   MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKA-QELCPDLIICDWVMPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE  + V+  P     F   L      E  + G  AGA+ FL KP     L   +R   
Sbjct: 60  GLEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + +
Sbjct: 120 RLHELSQDLK 129


>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 226

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+++    + ++        G+    A    E          P+ +++D  + G+L
Sbjct: 1   METILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANA-GHCHPDLIILDLMLPGML 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++++      + V  L  + +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GTEVCKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVL 119

Query: 119 QMQKSK 124
           +   ++
Sbjct: 120 RRSNTE 125


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A +  E  +       P+ L++D  M G+  F
Sbjct: 18  RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARA-FRPDALILDVMMPGMDGF 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D  V +L      E  + G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 77  GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAG 136

Query: 123 SKDENQ 128
             D+ Q
Sbjct: 137 HSDDKQ 142


>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 227

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            + +VD    + ++        GF V +      A +   +E  P  +++D  + G+   
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKI-QEKPPKLVILDIMLPGIDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+    + V +  L  + D    +     GA+ +++KPF+ + L   ++ + + 
Sbjct: 65  ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121

Query: 121 QKSKDENQF 129
            + + + + 
Sbjct: 122 YEPESDEKQ 130


>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
 gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R      G+ V EA    EA +   +E     +++D  M  +   
Sbjct: 14  KILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPHMDGW 73

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 74  QTCREIRKESK---VPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRR 130

Query: 121 QKSKDENQFLDA 132
             +   +  L A
Sbjct: 131 TNALASDDLLHA 142


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +++VD   I R+V ++     G  V EA +  +A      E     +V+D  M G+   
Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+      + + +L  +     +IA   AG N +L KPF++  L    + L  +
Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDKRELISRAKNLITL 813

Query: 121 QKSKDENQFLDAI 133
           +K+ +E     AI
Sbjct: 814 KKAVEEQNKFIAI 826


>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 230

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  V        G+    A+    A     ++ LP+ +V+D  +  +   
Sbjct: 4   RILIVDDDPDILDVTGFAVEKAGYETLFASDGLNAL-KASRQQLPDLIVLDIGLPEMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV + +L    D    I G   GA+ +L KPF+   L   ++ + + 
Sbjct: 63  EVCREIRKS---SDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKR 119


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++     +  G+ V  A+   EA E C +   P+ +V+D  M      
Sbjct: 10  TILVVDDEASIRRILETRLSMIGYNVITASDGNEALE-CFRVNEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
              + 
Sbjct: 126 VDKEQ 130


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A    E ++    E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEK-PDLIVLDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQQKI--ATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQK 122
             +
Sbjct: 120 RTQ 122


>gi|224537099|ref|ZP_03677638.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521276|gb|EEF90381.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 752

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ + +  +R   ++  +   + V EA++  EA      +L P+ +V D  M      
Sbjct: 503 TILVAEDNDDMRLFLKNSLST-DYHVVEASNGEEAMNMAL-QLNPDIIVCDIMMPVLNGD 560

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++     + +    L    D E +I G   GA+ ++ KPF+   L+  +R L   
Sbjct: 561 AVCSRIKTSVETSHIPFILLTALADKEDIIKGLDCGADDYITKPFDISILKARIRNLLAN 620

Query: 121 QKSKDE 126
           +K   E
Sbjct: 621 RKKIRE 626


>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 227

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            + +VD    + ++        GF V +      A +   +E  P  +++D  + G+   
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKI-QEKPPKLVILDIMLPGIDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+    + V +  L  + D    +     GA+ +++KPF+ + L   ++ + + 
Sbjct: 65  ALCREVRK---FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121

Query: 121 QKSKDENQF 129
            + + + + 
Sbjct: 122 YEPESDEKQ 130


>gi|218437504|ref|YP_002375833.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218170232|gb|ACK68965.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 373

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S     + + +  + G  V  A     A +   KE  P  +++D  M  +  F
Sbjct: 14  KILVVDDSPDNLFLIQTILEEQGLNVILAQDGIAALKLV-KEKSPKLILLDVMMPKMDGF 72

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P    + +  +         + G   GA+ F+ KP + + L   +R L ++
Sbjct: 73  EVTRQIRSNPNIPYIPILLITAYDQPS-AVKGLDVGADDFIRKPVDVDELLARVRSLLRL 131

Query: 121 QKSKDENQFL 130
           ++S DE + +
Sbjct: 132 KQSVDEREQM 141


>gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1020

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D +  +R+    L +   + V        A +       P+ ++ D  M      
Sbjct: 634 RILLADDNADMREYVARLLSPR-WTVEAVADGAAALDVALARP-PDLVLTDVMMPRLDGF 691

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       + V  L      E  + G  AGA+ +L+KPF+   L   +    ++
Sbjct: 692 GLLRALRSQASTRAIPVIMLSARAGEEARVEGMEAGADDYLVKPFSARELLARVSARLEI 751

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 752 SRMRMAN 758


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E  E E  P+ L++D  +  V 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAE-QPDILILDLMLPEVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 60  GLDVA-RTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRR 118

Query: 121 QKS 123
            + 
Sbjct: 119 SEL 121


>gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
 gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
          Length = 232

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF +  A    +A      +   + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLL--DNSIDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQFLD 131
           +     ++ Q +D
Sbjct: 116 RRSNWNEQQQNVD 128


>gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1177

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 830

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 831 VCVKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 888

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 889 ASKAELRRIE 898


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +        G+   EA       +   ++  P+ +++D  +  +  
Sbjct: 3   KRILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQD-PDLVLLDLMLPKMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R    G +  V  L    +    + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  FDVCRSIRA--EGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIR 119

Query: 120 MQKS 123
            ++ 
Sbjct: 120 RREM 123


>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 234

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D    V ++         + V EA +  EA    E    P+ +++D  M      
Sbjct: 5   KVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSK-PDIILLDIMMPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     +V +  L  + +    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 64  EVCKEIRKKA---NVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRR 120


>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
           F2-515]
          Length = 220

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A+   EA +   K+  P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLF-KDYEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
              + 
Sbjct: 126 IDKEQ 130


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +    R   +  G+ V  A    +  E        + +V+D  +  + 
Sbjct: 1   MTRILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNY-DLVVLDLMLPVID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R     ++V +  L         +AG  AGA+ +L+KPF  E L   +R   + 
Sbjct: 60  GFEVARRIRAA-SNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRR 118

Query: 121 QKSKDENQFL 130
           Q++    + L
Sbjct: 119 QQTYQHQEVL 128


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  E  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDEN--QFLDA 132
           + +   +E   Q L+A
Sbjct: 117 RRRGEPEEAVPQALEA 132


>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 230

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  + R      G+ V  A    EA E     L P+ +++D  +  V  F 
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRA-LQPDLILLDVMLPEVDGF- 62

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ-- 121
             +R +   + V V  L  + D    + G   GA+ ++ KPF+   L   ++   +    
Sbjct: 63  DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122

Query: 122 --KSKDENQF 129
             +   EN+ 
Sbjct: 123 VLREHKENER 132


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         EA    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDS-YQPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAK---SNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLR 120

Query: 120 MQKSKDEN 127
             +   + 
Sbjct: 121 RYQPAKQE 128


>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +  +     G+    A     A E   K   P  +++D  + G+   
Sbjct: 4   TILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALE-LSKSERPALIILDIMLPGMNGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     +D  +  L    + + +  G + GA+ ++ KPF+ + L   +  + + 
Sbjct: 63  EVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRR 122

Query: 121 QKSKD-ENQFLD 131
            K+   + + L+
Sbjct: 123 TKNASFKKELLE 134


>gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D    +R++ R      G +V EA +  +  E   ++   + L++D  M      
Sbjct: 34  RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKY-DLLILDLMMPDGDGW 92

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+     D+ +  L    +    + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 93  TVCREVRREM---DLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRR 149

Query: 121 QKS-KDENQFLD 131
            ++ +   + L 
Sbjct: 150 ARNERARGERLQ 161


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 49/125 (39%), Gaps = 1/125 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V  AT    A E   ++   + +++D  +  + 
Sbjct: 1   MTKILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQT-FDAILLDLMLPVMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                           V  +  + D    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GMTVLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRR 119

Query: 121 QKSKD 125
            +++ 
Sbjct: 120 SQTER 124


>gi|229592349|ref|YP_002874468.1| putative two-component response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229364215|emb|CAY51897.1| putative two-component response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 244

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++ +   +  GF V               E   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGA-GFRQAMNEAPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ ++ KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124

Query: 120 M 120
            
Sbjct: 125 R 125


>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
 gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
          Length = 239

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +      G+ V  A    EA +   KE+  + +++D  + 
Sbjct: 7   MKKLFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 65

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 66  KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 122

Query: 116 ELPQM 120
            L + 
Sbjct: 123 ALIRR 127


>gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1426

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R     L  +  + V        A E   K   P+ ++ D  M  +   
Sbjct: 648 RILLADDNPDMRDYVTRLLGES-YEVETVGDGVAALEAAWKH-RPDLVISDIMMPRLDGL 705

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R      DV V +L      E  + G  AGA+ +L KPF+   L   +R    +
Sbjct: 706 SLLKALRSDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 765

Query: 121 QKSKDENQFLD 131
            + + E    +
Sbjct: 766 AEVRREALRTE 776



 Score = 87.9 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL--LPNYLVIDESMEGVLE 61
            +L+V+ +  V +    L +D G+    ATS  +A +  +++     + ++ D  M G+  
Sbjct: 1305 VLVVEDNAEVGEFSTQLLHDLGYETVLATSAEQALQLLDQDDAARFHLVLSDVVMPGMDG 1364

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDF--EKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                  +R+      + V           +    G        L KP++ E L   +R  
Sbjct: 1365 VALGREIRRR--LPHLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRA 1417

Query: 118  P 118
             
Sbjct: 1418 L 1418


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +  +     G+ V  A      ++F  +E  P+ +V+D  +     
Sbjct: 3   KKVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQE-RPDLIVLDLMLPKLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKQLRQEKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
             +     Q
Sbjct: 120 RTQLTAGQQ 128


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A+S  EA +     + P+ L++D  M G+  F
Sbjct: 12  RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRT-VKPDLLILDVMMPGMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      DV V  L  +   E  + G + G++ ++ KPF+   L   +  + + 
Sbjct: 71  TLLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRR 128


>gi|198274925|ref|ZP_03207457.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135]
 gi|198272372|gb|EDY96641.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135]
          Length = 1373

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+++ +  +R+  R L     + V EA +  E  +    E +P+ ++ D  M  +  
Sbjct: 1119 QTVLIIEDNTDMRRYLRDLMKKH-YRVLEAENGEEGVKVAV-EQVPDLVLSDVMMPVMDG 1176

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F   A +R+      + +  L  + + +  +  +  GA+ ++ KPFN E L   +  L  
Sbjct: 1177 FTCCAELRKRKETAHIPILLLTAKAEDKDSVEASYRGADDYVRKPFNPEVLLAKVAHLLD 1236

Query: 120  MQKSKDE 126
            M++   +
Sbjct: 1237 MRRRLKQ 1243


>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ R       +++ EA +  EA      E   + +++D  M G   
Sbjct: 7   TKILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAK-GLEANYDLILLDLMMPGTDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+        +  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 66  IEVCRQVREK---KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
 gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
          Length = 232

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L +  GF V  A    +A    +     + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDAS--IDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSSWNEQQQ 125


>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 223

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +  E  +   +      +++D  +  + 
Sbjct: 1   MHKVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDIS 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+    + V V  +    +    + G   GA+ +++KPF+   +   ++ + 
Sbjct: 61  GWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAIL 117

Query: 119 QMQKSKDEN 127
                  E+
Sbjct: 118 SRTYGSQED 126


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R+   +     G+ V  A +  E  E   K    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGG-IDLVLLDLMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTALCRRIREQSR---VPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVL 116

Query: 119 QMQKS 123
           +  + 
Sbjct: 117 RRNQM 121


>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
 gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
          Length = 238

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R       +++ EA     A E        + +++D  M G+   
Sbjct: 6   KVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEY-DCILLDLMMPGMDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ        V  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 65  EVCKELRQK---KSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++   +    GF V  A    E       E   N +++D  M  + 
Sbjct: 1   MHKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRL-AEQDFNLVLLDVMMPRLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D  V  L    D +  + G  AGA+ +L KPF+   L   +R + + 
Sbjct: 60  GFAMLAKLRE-THDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRR 118

Query: 121 QKSKDENQ 128
            +S    +
Sbjct: 119 TQSAQPQR 126


>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +       F V EA    EA +   +E     L++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
                 N  L A
Sbjct: 122 TGQDAGNDVLSA 133


>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 236

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R + R      GF V EA     A      E  P+ +++D  M  + 
Sbjct: 1   MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEK-PDLVILDLMMPEMG 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R     +   V  L  +++    I G   GA+ ++ KPFN   L   +R + + 
Sbjct: 60  GY-EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118

Query: 121 QKS 123
            + 
Sbjct: 119 TQQ 121


>gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 256

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V +V     +  G+ V  A    EA         P+ +V+D  + G+   
Sbjct: 30  RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARA-AGHRPDLVVLDLMLPGMDGL 88

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R    G  V V  L    D +  + G   GA+ ++ KPF+   L   +  + 
Sbjct: 89  EVCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143


>gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
 gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           mimicus MB-451]
          Length = 1112

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  E  ++E  P  L++D  M G+    
Sbjct: 707 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 765

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 766 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 823

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 824 ASKAELRRIE 833


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            L++VD    +R++        GF VF A     A +   ++  P+ +V+D  +  +  F
Sbjct: 7   RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLV-RDTEPDLVVLDVMLPDMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V +L    D +  I G   G + ++ KPF+ E +   +R + + 
Sbjct: 66  TVTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 123


>gi|284037394|ref|YP_003387324.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816687|gb|ADB38525.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Spirosoma linguale DSM 74]
          Length = 488

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       V        G+ V  A     A E      LP+ +++D  M G+  F
Sbjct: 12  TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQA-TFALPDLILLDIMMPGMDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P    + V ++    +    + G   GA  ++ KPF  + +   +     +
Sbjct: 71  ETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLSL 130

Query: 121 QKSKDENQFLDA 132
           ++ +   + L A
Sbjct: 131 RRLQQSMEQLVA 142


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score =  146 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
 gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          G+   EA +  EA     +       ++D  +  + 
Sbjct: 1   MKKVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R     + + +  L         + G   GA+ ++ KPF+   L   +  L + 
Sbjct: 61  GFEVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRR 120

Query: 121 QKSKDEN 127
               ++ 
Sbjct: 121 TGGAEKE 127


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLL D +  +R   R + +   F V        A E      +P+ ++ D  M      
Sbjct: 613 RLLLADDNADMRDYVRRVLSSS-FEVEAVPDGQAALEAARA-CVPDLILTDVMMPRLDGF 670

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ PL   V V  L      E  + G  AGA+ +++KPF+   L   +    ++
Sbjct: 671 GLLRELRRDPLTRTVPVVMLSARAGEESAVEGLEAGADGYMVKPFSARELVARVCSTLEL 730

Query: 121 QKSKDENQFLDA 132
            + + E+   +A
Sbjct: 731 SRMRRESSLQEA 742


>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 237

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++        G+ V  A S  EA     +E   + +V+D  + G+ 
Sbjct: 1   MGHVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKV-REGNVDLVVLDVMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  + V +L    D    + G   G + ++ KPF    L   ++ + + 
Sbjct: 60  GLSLCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRR 119

Query: 121 QKSKDENQ 128
             +    Q
Sbjct: 120 AAASSRRQ 127


>gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
 gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
          Length = 576

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD   + R     L +  G+ +  A +  EA +    E +P+ +++D  M G+  F
Sbjct: 6   TILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKA-AESIPDLMLLDVMMPGMDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   ++ +  +    D +  + G  AGA+ F+ KPF+R  LR  +R + ++
Sbjct: 65  EVCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPFDRAELRARVRTITRL 124

Query: 121 QKSKDENQFLDAI 133
            + +   +  + +
Sbjct: 125 NRYRRLIETEEQL 137


>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    + ++ +      G+  FEA S   A E   K    + +++D  M    
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEIL-KHNKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLK 126


>gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL
           J2-003]
          Length = 225

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIIETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|119488886|ref|ZP_01621848.1| sensory box histidine kinase [Lyngbya sp. PCC 8106]
 gi|119455047|gb|EAW36189.1| sensory box histidine kinase [Lyngbya sp. PCC 8106]
          Length = 401

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+VD       +   +  + G+ V  A +   A     +   P+ +++D  M      
Sbjct: 7   SILIVDDIEDNLLLLTAILTEKGYQVQSAVNGLSALSLAVQN-RPDLILLDIMMPDINGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ + ++    +    +     GA  +L KP     L   ++    +
Sbjct: 66  EVCHRLKADPRTKDIPIIFISALGEVFDQVKAFSIGAVDYLTKPIRIPELLSRVKTHLSL 125

Query: 121 QKSKDENQFLDA 132
            + + E +  +A
Sbjct: 126 HQLQKELKEKNA 137


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + ++  +     G     A    EA    E E  P  +++D  +     F
Sbjct: 33  TVLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLE-ERRPQVIILDVMLPDTDGF 91

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    +  L         + G   GA+ ++ KPF+   L   ++ L +  +
Sbjct: 92  TLCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTE 151

Query: 123 SKDEN 127
            + + 
Sbjct: 152 GRRQQ 156


>gi|218440571|ref|YP_002378900.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7424]
 gi|218173299|gb|ACK72032.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7424]
          Length = 380

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    ++K+           V  A++  E  E   K L P+ ++ D  M G+ 
Sbjct: 1   MAQILIIDDDSAIQKLLSRALTRSHHEVILASNGTEGIEKAIK-LRPDLIICDWLMPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  V+ +P  +  F   L      E  I G  AGA+ FL KP     L+  +R   
Sbjct: 60  GIQVCRQVKMIPELSTTFFILLTALGSVEDRIIGLDAGADDFLCKPIEINELQARVRSGL 119

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + + L+
Sbjct: 120 RLHQLSHDLQQQKKLLE 136


>gi|323498262|ref|ZP_08103264.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326]
 gi|323316690|gb|EGA69699.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326]
          Length = 240

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        G+ V         ++  E    P+ +++D  + G   F
Sbjct: 4   RILVVDDDEEIRELLDEYLTKSGYQVATVGDGEALKQHLEVHGYPDLVLLDVMLPGDDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++R+      V +  L    D    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 64  TLCQYIRRESS---VPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAVLRR 120

Query: 121 QKSKDENQFLDAI 133
               +E++  DA+
Sbjct: 121 VHL-NEDKTSDAL 132


>gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28]
          Length = 202

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|126738480|ref|ZP_01754185.1| response regulator [Roseobacter sp. SK209-2-6]
 gi|126720279|gb|EBA16985.1| response regulator [Roseobacter sp. SK209-2-6]
          Length = 423

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
           + +L+VD S + R++       +GF V EA S   A E C +E  P+ ++ D  M G+  
Sbjct: 19  NRVLVVDDSRLQRRILVASLKKWGFEVIEADSGEAAMEICLQES-PDLILSDWMMPGMSG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           +EF    RQ       +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 78  IEFCQAFRQRSKDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 138 ILRMQRELSEKNRI 151


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A     A E  E E  P+ +++D  +  +  
Sbjct: 3   KKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAEN-PDLIILDLMLPKIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120

Query: 122 KSKD 125
            +  
Sbjct: 121 ATLK 124


>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 233

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +       + V  A    EA +   KE   + +++D  + 
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KETSFHLIILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 60  KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
 gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
          Length = 226

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G++V EA    EA E   +E     +++D  M  +   
Sbjct: 5   KILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPRMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QTCREIRQS---SQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
             +      +DA
Sbjct: 122 SHAIGTGDVIDA 133


>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ +       F + EA +   A E    E   + +++D  M  +   
Sbjct: 6   RILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMAL-ETEYDVILLDLMMPKLDGM 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  QVCEELRK---TKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRR 121

Query: 121 QKSKD 125
             +  
Sbjct: 122 ASATK 126


>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 230

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A    +  E   K+   + +++D  M  +  F
Sbjct: 4   KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKV-KDSNFDLIILDVMMPKIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++     + +  L  + D    I G   GA+ +++KPF+   L   ++ + +   
Sbjct: 63  TV-LRELRKTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYD 121

Query: 123 SKDE 126
            + E
Sbjct: 122 FETE 125


>gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
 gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
           DSM 18205]
          Length = 231

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ +      G+ V  A S  EA E        + L++D  M G+ 
Sbjct: 5   MKRILVVDDEQDLCEILKFNLETEGYEVETANSAEEALEMDIAS--FDLLLLDVMMGGMS 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P+  +V + +L         + G   GA+ ++ KPF+   +   +R + 
Sbjct: 63  GFQLAKQLKGNPMTANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVL 122

Query: 119 QMQKSKD 125
           +    + 
Sbjct: 123 RRTAEQA 129


>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
 gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
          Length = 230

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    + ++        G++  +A     A      +  P+ +++D  + G   
Sbjct: 4   KTILIVDDESAICEMVTVALEMAGYVCLQAADAKAA-HTLIVDKRPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++      + +  L  +V+ +  I G  +GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  +  +  +  G++V  A    EA      E  P+ +++D  +     +E
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMA-SERAPDLVILDWMLPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +V +  L    +    I G   GA+ +++KPF+   L   +R + +  
Sbjct: 64  VCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|332708874|ref|ZP_08428845.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya
           majuscula 3L]
 gi|332352416|gb|EGJ31985.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya
           majuscula 3L]
          Length = 381

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    ++ + +      G+ V  A++  E     EK L P  ++ D  M G+ 
Sbjct: 1   MNQILIIDDDPAMQMLLKRALCHQGYEVAVASNGEEGLVQVEK-LRPALVICDWIMPGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +      +      E  + G  AGA+ FL KP     L   +R   
Sbjct: 60  GLDVCRQLKVTPGLSTTIFILVTSRNSIEDRVEGLDAGADDFLCKPIEIAELNARVRAGL 119

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 120 RLHQLSHDLQHQKQLLE 136


>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R      G+ V  A    +A +       P+ LV+D +M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASN-RPDALVLDLNMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D+ +  L         ++G  AGA+ +L KPF  E L   MR L + 
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRR 118


>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A+   EA +   K+  P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLF-KDYEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++  + F + G+ V       EA      E +P+ +++D  +EG   +
Sbjct: 5   KLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAM-VLASEDVPDLIILDWMIEGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L      +  + G   GA+ +L KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRR 123

Query: 121 QKSKDENQFLD 131
            +     + ++
Sbjct: 124 IRPALAGETIE 134


>gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1299

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +   R        +  F + EA +  EA E       P+ +V D +M G+  L
Sbjct: 1051 KILVVEDNEDFRFYLLDNLREE-FALEEARNGEEAWEKVLS-YHPDLIVSDINMPGMSGL 1108

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +R+ P    + V  L         I G  +GA+ +++KPFN E L   +R   + 
Sbjct: 1109 ELCRKIRRDPRTKHIPVILLTAISSDSAQIEGLDSGASDYIIKPFNVELLLTKLRTQLKQ 1168

Query: 121  QKSKDE 126
            + S ++
Sbjct: 1169 KSSLEK 1174


>gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586]
 gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586]
          Length = 236

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+  +      GF V  A +     +  E    P+ +++D  M G   
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHN-PDLIILDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    +    + G   GA+ ++ K F+   L   ++ + +
Sbjct: 64  FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120

Query: 120 MQKSKD 125
             +  D
Sbjct: 121 RSQLSD 126


>gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223]
 gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223]
          Length = 236

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+  +      GF V  A +     +  E    P+ +++D  M G   
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHN-PDLIILDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    +    + G   GA+ ++ K F+   L   ++ + +
Sbjct: 64  FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120

Query: 120 MQKSKD 125
             +  D
Sbjct: 121 RSQLSD 126


>gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
 gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
          Length = 236

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+  +      GF V  A +        E    P+ +++D  M G   
Sbjct: 5   KQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHH-PDLIILDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    +    + G   GA+ ++ K F+   L   ++ + +
Sbjct: 64  FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120

Query: 120 MQKSKD 125
             +  D
Sbjct: 121 RSQLSD 126


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR----EFCEKELLPNYLVIDESM 56
           M  +LLVD    +      L    G+ V  A     A     +  ++  L + L++D  +
Sbjct: 1   MSQILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWML 60

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +E    +R         V +L  +   +  + G  AGA+ +L+KPF    L   +
Sbjct: 61  PKLSGIEVCQELRSQSQL--TPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARV 118

Query: 115 RELPQMQKSKDE 126
           R L +  +   +
Sbjct: 119 RALLRRSEQFSQ 130


>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 238

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    + ++        GF  F A     A+   +  +LP  +++D  + G   L
Sbjct: 13  RVLIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDA-VLPEVILLDWMLPGQSGL 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R       + +  L    D    +AG  AGA+ ++ KPF+ + L   +R + + 
Sbjct: 72  SLARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRR 131

Query: 121 QKSKD 125
           +  + 
Sbjct: 132 RAPEQ 136


>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-3-3Ab]
          Length = 210

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A++  E  E   +   P+ ++ D  M  +  
Sbjct: 5   KRLLLIDDDPNLILLVKDYLEFRGYEVVAASNGLEGLEAM-RHFTPDLIICDVMMPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  +R       + V +L         + G   GA+ +L+KPF  E L   +  + +
Sbjct: 64  YTFVQTIRSNSATDWIPVIFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVLK 123

Query: 120 MQKSKDENQ 128
             +   + Q
Sbjct: 124 HTERLLQMQ 132


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    + ++ +    + G+ V  +    +      KE  P+ +++D  +    
Sbjct: 1   MKKILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLK-TKEFQPDLILLDWMLPNIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +R       + V  L  +   E  + G   GA+ ++ KPF+ + +   +  + 
Sbjct: 60  GIDLLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVL 119

Query: 119 QMQK--SKDENQFLDA 132
           +  K  S ++ + L A
Sbjct: 120 RRYKYTSNEKIEVLKA 135


>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+LLVD    +  +        GF    AT+  +A     +  +P+ +++D  +    
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRR-RVPDLVLLDVMLPDVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    V V  L  + D    + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GTEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVL 119

Query: 119 QMQKSKDENQFLDAI 133
           +   ++   +  +++
Sbjct: 120 RRAGARPSERPPESV 134


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R +      + G    +A    EA +  E +   + +++D  M  +  
Sbjct: 3   TSILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLE-QKEFDLIILDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   +  
Sbjct: 62  IEACMKIREE-RNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRY 120

Query: 122 K 122
           K
Sbjct: 121 K 121


>gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1119

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD   +  +V R+      + + EA +  EA E  EK L+P+ +++D  M  +   
Sbjct: 717 TVLIVDDEPVNLQVIRNNLALQNYAITEANNGIEALEMIEKGLMPDLILLDVMMPHMTGY 776

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+  L  ++ +  L  +     ++ G  +GAN +L+KPF+++ L   ++   ++
Sbjct: 777 EVAKKLREKYLHIELPIIMLTAKPLVSDLVEGFVSGANDYLIKPFSKQELLARIKIHIRL 836

Query: 121 QK 122
            K
Sbjct: 837 SK 838


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R   + L    G+ V  A    EA E+      P+ LV D  M  +   
Sbjct: 6   TVLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAA-TSPDLLVADVVMPVMDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G  V +  L    D    +AG  AGA+ +L KPF  + L   +R + + 
Sbjct: 65  GLCRMLRA--AGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARR 122


>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+    + ++      + G+  F  ++   A +F  +   P  +++D  +    
Sbjct: 21  MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFV-QHRAPQLVLLDWMLPDRS 79

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L  ++ +R       + V  L  +   E  IAG   GA+ ++ KPF+   L   ++ L 
Sbjct: 80  GLHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALL 139

Query: 119 QMQKSKDENQFLDA 132
           + +  +   + + A
Sbjct: 140 RRKSPEHAQEVMSA 153


>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 229

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++   + +  G+ V  +T   EA    +KE  P+ +++D  +  +   
Sbjct: 5   KILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKES-PDLVILDLWLPDLDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + V  +    +    IAG   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  EVCRQLRAKYA---IPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRR 120

Query: 121 QKSKD 125
            +  D
Sbjct: 121 VQGSD 125


>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A    EA +   K+  P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLF-KDYDPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
              + 
Sbjct: 126 IDKEQ 130


>gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes str. Scott A]
          Length = 225

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + R      GF V  A       E    +   + +++D  + GV 
Sbjct: 1   MSRILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTD-QFDLVILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VRQ     +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICREVRQK---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    + +V +    + G+    A    EA++   K   P+ +++D  M    
Sbjct: 1   MSKILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQV-KGFKPDLILLDIIMPETD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R+        V  L  + D    + G   GA+ +++KPF+ + L   ++ + 
Sbjct: 60  GYEILKWIRRE---HQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R + +      G+ V    +  EA +  E    P+ +V+D  + G+   
Sbjct: 4   RILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARP-PDLVVLDLMLPGMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V+V  L         + G   GA+ ++ KPF+   L   +R   +  +
Sbjct: 63  EVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQ 122

Query: 123 SKDE 126
              E
Sbjct: 123 LDRE 126


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    V KV        G+ V +AT+  EA E   +E  P+ +V+D  +  +  F
Sbjct: 5   SILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRES-PDLIVLDVMLPKMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 64  AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120


>gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC
           12478]
          Length = 1405

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R+    L     + V   +   +A      E +P+ ++ D  M  +   
Sbjct: 647 RVLVADDNADMREYLTRLLRSADYRVEAVSDGRQALAVIRAE-VPDLVISDVMMPRLDGL 705

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R  P    V V  L      E  + G  AGA+ +L+KPF    L   +R   QM
Sbjct: 706 ALVAQLRADPRTAAVPVLLLSARAGQEASVEGLDAGADDYLVKPFAATELLARVRANVQM 765

Query: 121 QKSKDENQF 129
            + ++ +  
Sbjct: 766 TRLRNHHAR 774


>gi|218246672|ref|YP_002372043.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8801]
 gi|218167150|gb|ACK65887.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 8801]
          Length = 379

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +  + +      G+ V    +  +      +EL P+ ++ D  M G  
Sbjct: 1   MAQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKA-QELCPDLIICDWVMPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE  + V+  P     F   L      E  + G  AGA+ FL KP     L   +R   
Sbjct: 60  GLEVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + +
Sbjct: 120 RLHELSQDLK 129


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  +  +     GF+V       EA E    E +P+ +++D  + G   L
Sbjct: 29  RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEA-EIRLSETMPDLVILDWMLPGVSGL 87

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + V  L    +  + + G   GA+ +++KPF+   L   +R L + 
Sbjct: 88  EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147

Query: 121 QKSKDENQFLDA 132
            +       L A
Sbjct: 148 ARPDRVAAVLSA 159


>gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
 gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
          Length = 256

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+++    + ++        G     A +  +A +    ++LP+ +++D  + G    
Sbjct: 27  SILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQA-QRLISDVLPDLVLLDWMLPGKSGV 85

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    + +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 86  AFARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 145

Query: 121 QKSK 124
           +  +
Sbjct: 146 RAPQ 149


>gi|258591258|emb|CBE67555.1| Two-component response regulator (fragment) [NC10 bacterium 'Dutch
           sediment']
          Length = 329

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+VD +    ++   L    G+ V  A    EA         P+ +++D  M  +   
Sbjct: 12  RLLVVDDNAQNIELLTALMEAEGYEVISAADGLEALTHVAAAP-PDLILLDIMMPKLDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V +  L      E  I G  AGA+ F+ KPF+R  L+  +R L ++
Sbjct: 71  AVCRRLKEEAATRLVPIVLLTALGAEEARIRGIEAGADDFITKPFSRTELKARIRSLLRL 130

Query: 121 QKSKDENQFLDAI 133
           +   DE +  + +
Sbjct: 131 KSFTDELEHAETM 143


>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA +  E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161]
 gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 225

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 273

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + +   +  GF V       EA +   +E  P+ +++D  + G   +
Sbjct: 42  KILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEP-PDLILLDLMLPGTDGI 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+      + +  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 101 EICRKVREKYR---MPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRR 157

Query: 121 QKSKDE 126
            +   E
Sbjct: 158 VRDHGE 163


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V +A +  E       E +P+ +V+D  M     +
Sbjct: 7   TVLIVEDELAQREVLAYNLEADGFRVLKAENGEEGL-LVVDEQMPDVIVLDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 SRPSAVGLRLE 136


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ R      G+ V  A    EA       L P+ +++D  + G+   
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNA-LKPDIILLDIMLPGIDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  +  +V+    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  QVCREIRKK---SNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120

Query: 121 QKSKDENQFLDAI 133
                    +  +
Sbjct: 121 VGQSSAESEIKEV 133


>gi|239908712|ref|YP_002955454.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239798579|dbj|BAH77568.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 389

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +     RK+        G+ V   T+  EA +  ++   P   ++D  M  +   
Sbjct: 2   RILIAEDDPASRKILTVCLEKLGYQVVATTNGLEAWQAMQQADAPKLAILDWMMPEIDGV 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
                +R +      ++  L      E +  G  AGA+ +L KPFN   L+  ++    L
Sbjct: 62  EVCRRLRAINARQQPYLILLSALGTKEDIAKGLDAGADDYLTKPFNVLELQARIKVGVRL 121

Query: 118 PQMQ-KSKDENQFLDA 132
            +MQ + +   + ++A
Sbjct: 122 LEMQARLRQSMETIEA 137


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +    R       + +  A +  +A +    E+  + +++D  +  +   
Sbjct: 7   NILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIF-EITYDLILLDIMLPLMDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G +  V  L    D E  + G   GA+ +L KPF+   L   +R L +   
Sbjct: 66  SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125

Query: 123 SKD 125
            +D
Sbjct: 126 KRD 128


>gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 243

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    R      G  V  A +  +A E   +E +P+ +++D  M G+  
Sbjct: 11  KLILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKV-REDMPDAVLLDIMMPGLDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +   +R++   + + V +L  + + +  I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 70  Y-ETLRRLREFSSIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRRH 128


>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 224

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +    R      G+ V  A+   +A +   ++  P+ +V+D  + G+ 
Sbjct: 1   MSTILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQP-PDLVVLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   +DV +  L         +AG  AGA+ +L+KPF  E L   +R   + 
Sbjct: 60  GLEVA-RRLRAASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118

Query: 121 QKSKDENQFL 130
           ++ +D    L
Sbjct: 119 RQREDAATVL 128


>gi|75761471|ref|ZP_00741436.1| Two-component response regulator yycF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491032|gb|EAO54283.1| Two-component response regulator yycF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 173

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      GF +  A    EA E   +E  P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEE-QPDMVLLDIMLPGKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  LEVCREIRKSSE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RHQQ 123


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R    D G+ V  A    E     E E   + LV+D  + G+  
Sbjct: 5   RRVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLE-EGGWDALVLDLMLPGIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LEICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRT 123

Query: 122 KSKDENQFLDA 132
           ++ + N  +DA
Sbjct: 124 EALERNARIDA 134


>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+L+VD    + ++ +      G+  FEA S   A E   K    + +++D  M    
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEIL-KHNKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLK 126


>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 226

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ D   ++R++        G+ V EA    +A +   ++  P+ +++D  M G  
Sbjct: 1   MERILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQK-PDLVLLDVMMPGYD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V +  +  + +    +     G + ++ KPF+ + L   M+ L 
Sbjct: 60  GWTVCREIR---RTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALL 116

Query: 119 QMQKSKDENQFLDAI 133
           +    + E    DA+
Sbjct: 117 RRLHGEGEENGADAV 131


>gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1366

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+ + +  +R     L  +  + V +A    EA  +  K +LPN ++ D  M  +   
Sbjct: 1114 TVLIAEDNAELRDYMASLLENQ-YTVLKAADGQEALSWARK-VLPNLIISDLMMPRMDGM 1171

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   E  I G + GA+ +L KPF+ E L   +  L ++
Sbjct: 1172 ELTVSIKSDERTSHIPVILLTAKSGQESRIDGLKTGADDYLTKPFSVEELTVRVANLIEL 1231

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1232 RKKLAE 1237


>gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
 gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A +  +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDSS--IDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ+       V  L         + G   GA+ +L KPFN   L   +R L 
Sbjct: 59  GIETLKELRQI---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALL 115

Query: 119 QMQKSKDENQ 128
           +     ++ Q
Sbjct: 116 RRSNWSEQTQ 125


>gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6]
 gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6]
          Length = 234

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R   +  G+ V  A    EA E       P  +V+D  +  +   
Sbjct: 4   RILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAV-HWRPEVIVLDLGLPVMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V +  L         +     GA+ +L+KPF  + L   +R   + 
Sbjct: 63  EVCRRIR---GWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRH 119

Query: 121 QKSKDEN 127
                 N
Sbjct: 120 SSHIQAN 126


>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
 gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
          Length = 229

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V  A +  EA     +E  P+ +V+D  M     +
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVLRAENGEEAL-LIVEEDTPDIIVLDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPSTVGVRLE 136


>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 234

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R+  +    D  F V  A++  E  E  +K   P+ ++ D  M      
Sbjct: 8   RLLLVDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNP-PDLVISDIMMPQVDGY 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F++ +R+ P    + V +L  +      I G +AG ++++ KPF+ + L   +  L   
Sbjct: 67  QFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLLVR 126

Query: 121 QKSKDE 126
           + +  E
Sbjct: 127 RAAAKE 132


>gi|86608608|ref|YP_477370.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557150|gb|ABD02107.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 339

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD     R +   L    G+ V EA S  +A +   K   P+ +++D  M G+  F 
Sbjct: 24  LLIVDDQPNSRLLLGDLLQSIGYRVSEAESGNQALQML-KTFQPDLILLDVMMPGLDGFE 82

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  +    D +  + G  AGA+ FL KPF+   L   +R L + +
Sbjct: 83  VCRRIKANDETRLIPVVLVTAASDHKNRVRGIEAGADDFLSKPFDESELLARVRSLVRQK 142

Query: 122 KSKDEN----QFLDAI 133
              ++     Q L AI
Sbjct: 143 HLNEDLDHAAQVLFAI 158


>gi|312962809|ref|ZP_07777296.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311282836|gb|EFQ61430.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 244

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++ +   +  GF V               E   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGA-GFRQAMNEAPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ P    V +  L    D    + G   GA+ ++ KPF+   L+  ++ L +
Sbjct: 65  FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124

Query: 120 M 120
            
Sbjct: 125 R 125


>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+LLVD    +  +        GF    AT+  +A     +  +P+ +++D  +    
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRR-RVPDLVLLDVMLPDVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    V V  L  + D    + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GTEVCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVL 119

Query: 119 QMQKSKDENQFLDAI 133
           +   ++   +  +++
Sbjct: 120 RRAGARPSERPPESV 134


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + ++     GF V          +   KE   + +++D  + G+  
Sbjct: 3   KRILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRA-KEADFDLIILDLMLPGMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ  +   V +  L  + D    + G   GA+ ++ KPF+   +   +R + +
Sbjct: 62  MDVCRQLRQEQIF--VPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RIEQ 123


>gi|294505895|ref|YP_003569953.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Salinibacter ruber M8]
 gi|294342223|emb|CBH23001.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Salinibacter ruber M8]
          Length = 802

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D + +V  + R       + V EA    E        LLP+ ++ D  M     
Sbjct: 533 TTVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLART-LLPDLVISDVMMPEVDG 590

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++Q P    V V +L    D E  + G   GA+++L KPF  E L   +  L  
Sbjct: 591 FELCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLIA 650

Query: 120 MQKSKDE 126
            +++  E
Sbjct: 651 TRRTLRE 657


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + ++     G+ V  A    E  E    +  P+++V+D  +  +  
Sbjct: 3   KKILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDK-PDFIVLDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKNLRQQKMM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILR 119

Query: 120 MQK 122
             +
Sbjct: 120 RTQ 122


>gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 255

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V +A       E        +++++D  +  + 
Sbjct: 1   MKKVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAM-NHQLDFIILDLMLPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++RQ  +  +  +  L  + D  + I G   GA+ ++ KPF+   +   M+ + 
Sbjct: 60  GMDVCKNLRQNKI--NTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
 gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +       F V EA    EA +   +E     L++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
                 N  L A
Sbjct: 122 TGQDAGNDVLSA 133


>gi|115352497|ref|YP_774336.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282485|gb|ABI88002.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 251

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 11  MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 69

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 70  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 129

Query: 120 MQKS 123
            +++
Sbjct: 130 RRRA 133


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      G+ V  A    EA +   K++ P+ +++D  +  V  
Sbjct: 3   KKILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQV-KDVDPDLIILDLMLPKVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D  +  +  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 62  LEVA-REVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 120


>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    + ++ +      G+  FEA S   A E   K    + +++D  M    
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEIL-KHNKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLK 126


>gi|237725226|ref|ZP_04555707.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229436492|gb|EEO46569.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1446

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1247

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I G + G + ++ KPF+ + L+  +  L + 
Sbjct: 1248 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+AI
Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAI 1331


>gi|186476911|ref|YP_001858381.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193370|gb|ACC71335.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 241

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDASS-LERRIERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           K
Sbjct: 122 K 122


>gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 227

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + ++        GF   + +    A     KE LP  +++D  + G+  
Sbjct: 5   KKIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKI-KEELPLLIILDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    T+V +  L  + D    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  MTLCKEVRK---FTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120

Query: 120 MQKSKD 125
             + ++
Sbjct: 121 RYEHEE 126


>gi|83815858|ref|YP_444228.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83757252|gb|ABC45365.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Salinibacter ruber DSM 13855]
          Length = 802

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D + +V  + R       + V EA    E        LLP+ ++ D  M     
Sbjct: 533 TTVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLART-LLPDLVISDVMMPEVDG 590

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++Q P    V V +L    D E  + G   GA+++L KPF  E L   +  L  
Sbjct: 591 FELCRKIKQDPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLIA 650

Query: 120 MQKSKDE 126
            +++  E
Sbjct: 651 TRRTLRE 657


>gi|291568908|dbj|BAI91180.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 483

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++ +++    G+ V  ATS   A     +   P+ +++D  M  +   
Sbjct: 14  TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTR-FRPDLILLDIMMPEMDGY 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++++ P   D+ V +L         +   + G   +L KPF  E     ++    +
Sbjct: 73  QVCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQLTL 132

Query: 121 QKSKDENQ 128
           +  + + +
Sbjct: 133 RSLQKQLE 140


>gi|284050575|ref|ZP_06380785.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira platensis str. Paraca]
          Length = 487

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++ +++    G+ V  ATS   A     +   P+ +++D  M  +   
Sbjct: 18  TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTR-FRPDLILLDIMMPEMDGY 76

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++++ P   D+ V +L         +   + G   +L KPF  E     ++    +
Sbjct: 77  QVCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQLTL 136

Query: 121 QKSKDENQ 128
           +  + + +
Sbjct: 137 RSLQKQLE 144


>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 242

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E +    ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFK-FVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNEHKQIQ 143


>gi|212690595|ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
 gi|212666841|gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
          Length = 1440

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1241

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I G + G + ++ KPF+ + L+  +  L + 
Sbjct: 1242 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+AI
Sbjct: 1302 RKVLQSVFLSKYGAQPKKEPLEAI 1325


>gi|307152260|ref|YP_003887644.1| AraC family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982488|gb|ADN14369.1| two component transcriptional regulator, AraC family [Cyanothece
           sp. PCC 7822]
          Length = 265

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++   +   + +      GF +  A +  +  +   +  LP+ ++ D  M  + 
Sbjct: 1   MTRILLIEDDDLNCTLLQECLESEGFHIISAENGLQGLQQARQH-LPDLILCDIMMPELD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ P+   +   +L  +    +   G   GA+ +L KP   E +  A+    
Sbjct: 60  GYSVLLQLRQDPITAFIPFIFLTAKTTKAEQRRGMELGADDYLTKPLTAEEVIAAVEARL 119

Query: 119 QMQKSKDE 126
           + +   + 
Sbjct: 120 ERKAMLER 127


>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 231

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  + +++    + ++  + F   GF V    +   A E  ++E  P+ +V+D  M    
Sbjct: 1   MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEK-PDIVVLDLMMPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LEF   VR       + +  L  +      I G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALL 119

Query: 119 QMQKS 123
           +  KS
Sbjct: 120 RRSKS 124


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    V KV        G+ V +AT+  EA E   +E  P+ +V+D  +  +  F
Sbjct: 5   SILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRES-PDLIVLDVMLPKMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 64  AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120


>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 267

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 43  MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALD-AGLQGGIDLVVLDLGLPGMD 101

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 102 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 161


>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
 gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K         G  V  A    EA E+ +K    + +++D  +  +  
Sbjct: 3   KKILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKK-CEYDLVLLDVMLPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ V  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FQVCQQIRE---FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDEN 127
               + E 
Sbjct: 119 RTAKRKEE 126


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + +V +      GF         E++     E  P+ +++D  +  +   
Sbjct: 25  KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFI-EYNPDLVLLDIMLPSMDGI 83

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     +  V  L  + +    + G   GA+ +++KPF  + L   ++ + + 
Sbjct: 84  DVLKWIRKE---HETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRR 140


>gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
          Length = 230

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    +    R    +FG  V  A     A     +E + + LV+D  M  + 
Sbjct: 6   MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAML-QEGVFDLLVLDVIMPKMD 64

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   R         V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 65  GLEVCRQFRLKEGY-HTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 123

Query: 119 QMQKSKDENQF 129
           +  K + + Q 
Sbjct: 124 RRGKERPDRQL 134


>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R           F V EA +  EA    + E  P+ +++D  +  +  F
Sbjct: 4   RILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEK-PDLVLLDIMLPDMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                       + V  L         + G   GA+ +++KPF+   L   ++ + +   
Sbjct: 63  QVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAG 122

Query: 123 SKD 125
            ++
Sbjct: 123 KQN 125


>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 237

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +++LP+ ++ D  M      
Sbjct: 12  RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFSKA-QQMLPDVVITDVMMPRLDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 71  GLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 130

Query: 121 QK--SKDENQFLDA 132
           Q+   ++  +F DA
Sbjct: 131 QQRLLQEAARFADA 144


>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1322

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD + +   +   + + +G+ V  A     A +  E   LP+ +++D  M  +   
Sbjct: 12  NILVVDDNPVNLVILSKVLSKYGYKVRSAPDGEMALKSVEA-KLPDLILLDIMMSDMNGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      D+ V ++    +    +     G   ++ KPF  + +   +    ++
Sbjct: 71  EVCNRLKTNEKTRDIPVIFISALEEPLDKVKAFTLGGADYIAKPFQTQEVIARVENQLRI 130

Query: 121 QKSK----DENQFL 130
           ++ +    ++N+ L
Sbjct: 131 RRLQNQLVEQNEQL 144



 Score =  107 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             LL+V++    ++    L    GF V+ A +  E  E  ++   P+ + +D  M  +   
Sbjct: 1104 RLLIVENQWESQQFLAELLVPLGFEVYTAENGQEGVELWQR-CQPHLIFMDIQMPVMNGY 1162

Query: 61   EFIAHVRQMPLG------TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            E    +R M +           +  L      E+       G + F+ KPF  E L   +
Sbjct: 1163 EATQKIRAMEMNNLTDILQPTKIIALTASAFEEQRTYILSIGCDDFICKPFREEFLLNKL 1222

Query: 115  RELPQMQKSKDE 126
             E   ++    E
Sbjct: 1223 AEHLGIKYIYAE 1234


>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
 gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
          Length = 240

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLVD    + ++  +     G+    A     A +  E E   +++++D  +  +
Sbjct: 1   MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHY-DFILLDIMLPQL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G    +  +  + +    +     GA+ ++ KPF+   L   ++ + +
Sbjct: 60  DGIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum nigrificans DSM 574]
 gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum nigrificans DSM 574]
          Length = 454

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +           G+ V  AT   +  E    E +P+ +++D  M  +  
Sbjct: 3   RKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNE-VPSLVILDLKMPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR   +   + V  +      +  I   + GA  ++ KPF+ + L+  +++   + 
Sbjct: 62  LEVLVRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKLVVKQALMVN 121

Query: 122 KSKDENQFLDA 132
           + + E  FL +
Sbjct: 122 QLEVEVNFLRS 132


>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
 gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
          Length = 244

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ R       +++ EA +  EA     +    + +++D  + G   +
Sbjct: 12  KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDY-DLILLDLMLPGKDGI 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G  AG + +++KPF+   +   ++ L + 
Sbjct: 71  EVCKQLREK---KATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 127


>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CC9902]
 gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. CC9902]
          Length = 245

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +++LP+ ++ D  M      
Sbjct: 20  RLLLVDDEPGLRTAVQAYLEDEGFDVTTAVDGEEGFTKA-QQMLPDVVISDVMMPRLDGY 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 79  GLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQR 138

Query: 121 -QKSKDENQFLD 131
            Q+   E     
Sbjct: 139 QQRLLQEAARFA 150


>gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e]
 gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL
           R2-561]
 gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e]
          Length = 225

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  145 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E    E  P+ +++D  +  + 
Sbjct: 1   MKRILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAEN-PDVIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 242

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNEHKQIQ 143


>gi|170078959|ref|YP_001735597.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886628|gb|ACB00342.1| Two-component response regulator; GGDEF domain protein
           [Synechococcus sp. PCC 7002]
          Length = 602

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    +R++   L     + V EA +          E  P+ ++ D  M G+   
Sbjct: 9   TILVIEDEDSIRELIVTLLIAEDYQVLEAENGQIGVGIAI-ENRPDLIICDIMMPGMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++  P    +   +L  +   E +  G   GA+ +L KPF    L  A++   + 
Sbjct: 68  GVLEILQADPETETIPFIFLTAKGTKENIRQGMNLGADDYLTKPFTTYELLDAIKTRLRK 127

Query: 121 QKS 123
            +S
Sbjct: 128 HRS 130


>gi|158338729|ref|YP_001519906.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158308970|gb|ABW30587.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017]
          Length = 333

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD      ++   +  + G+ V +A +   A +       P  +++D  M  +   
Sbjct: 35  KILLVDDQPQNLRLLTDVLEEQGYEVLQALNGNVALQAV-SLDQPQLILLDIQMPEMDGY 93

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V ++    +    +     G   ++ KPF    +   ++   ++
Sbjct: 94  TVCQKLKADPSTQDIPVVFVSALDESWDKVKAFSVGGVDYITKPFKVVEVLARVQNQLKI 153

Query: 121 QKSKD--------------ENQFLDAI 133
           Q+ +               E Q L A+
Sbjct: 154 QQLQQALKTQNAQLHQANLELQRLAAL 180


>gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A +    +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIV--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     D+ Q
Sbjct: 116 RRSNWTDQQQ 125


>gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+++    + ++        G+    A       E       P+ +++D  + G  
Sbjct: 1   MKTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNP-PDLILLDLMLPGLM 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +++      + +  L  + +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GTEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    + ++ ++     G+   EA    E  +   +E  P+ +++D  +  +  F
Sbjct: 4   RILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLA-QEKNPDLILLDVMLPKMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R +       +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  TV-LRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRR 119


>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 248

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A+   EA +   K+  P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLF-KDYDPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
              + 
Sbjct: 126 IDKEQ 130


>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 238

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R + +       + V EA+   EA E        + +++D  M  +   
Sbjct: 6   KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALA-FDYDVILLDLMMPEMDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 65  EVCQKLRKQ---KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 121 QKSKD 125
             S  
Sbjct: 122 SSSTK 126


>gi|237709630|ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229456266|gb|EEO61987.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1446

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1247

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I G + G + ++ KPF+ + L+  +  L + 
Sbjct: 1248 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+AI
Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAI 1331


>gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland
           1988]
 gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S]
 gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
 gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
          Length = 225

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF   EA    +A E    E  P+ +++D  +  +  F
Sbjct: 4   KILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEK-PDLILLDIMLPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++       +  +  + +    + G   GA+ ++ KPF+   L   ++   +   
Sbjct: 63  TVC-RKLRESISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVA 121

Query: 123 SKDENQ 128
           S  E Q
Sbjct: 122 SSAETQ 127


>gi|302877367|ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580156|gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 632

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 6/132 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +R + + L    G  V  A +  EA E  +   +P  ++ D  M  +   
Sbjct: 322 RILLVDDDRAIRLLYKTLLEKSGHTVTTACNGREALESLQAS-VPQLIISDWMMPEMDGI 380

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
            F   +R+ P    ++V+ +  +   +++I    AGAN +L KP N + L   +R    +
Sbjct: 381 EFCRELRKNPEWHKIYVFIVTAQESTDRLIEAFEAGANDYLSKPINPKVLAARLRSAQRI 440

Query: 118 PQMQKSKDENQF 129
            QMQ++++E++ 
Sbjct: 441 VQMQEAQEEDRL 452


>gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A +    +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVL--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     D+ Q
Sbjct: 116 RRSNWTDQQQ 125


>gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 214

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R        D GF+V  A S         +E +P+ +V D  M  + 
Sbjct: 1   MQKILIVDDDRTLRAAITRYLEDRGFVVNSAASGLAGFNSFSQE-VPDLIVSDIVMPDMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R    G  +   +L    + E  I G   GA+ +L+KPF+   L   +    
Sbjct: 60  GFELCTKIRNTDAGQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQL 119

Query: 119 QM 120
             
Sbjct: 120 AR 121


>gi|134296588|ref|YP_001120323.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139745|gb|ABO55488.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|325521611|gb|EGD00393.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 241

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R++        GF V  A    EA  F E+ + P+ +V+D  +  +  F
Sbjct: 10  RLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAER-IRPDLVVLDVMLPDMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +G  + V +L      +  +AG R  A+ ++ KPF+ E +   +R + +  +
Sbjct: 69  AVAGRLREMGGQMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRRTR 127


>gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451]
 gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+  +      GF V  A +     +  E +  P+ +++D  M G   
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQN-PDLIILDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    +    + G   GA+ ++ K F+   L   ++ + +
Sbjct: 64  FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120

Query: 120 MQKSKD 125
             +  D
Sbjct: 121 RSQLSD 126


>gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
 gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
 gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
 gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+  +      GF V  A +     +  E +  P+ +++D  M G   
Sbjct: 5   KQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQN-PDLIILDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    +    + G   GA+ ++ K F+   L   ++ + +
Sbjct: 64  FTLCQKLRKHSS---VPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILR 120

Query: 120 MQKSKD 125
             +  D
Sbjct: 121 RSQLSD 126


>gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 246

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L    + +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 227

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +  + G+ V        A     +E  P+ +++D  + G+  F
Sbjct: 4   RILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQF-QEHNPDLVLLDVMLPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D  +  L    D   ++ G  AGA+ ++ KPF  + L   +R   + 
Sbjct: 63  DVCRAIRRV---SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119

Query: 121 QKSKDENQFLD 131
           ++    ++ L 
Sbjct: 120 REDSQADEGLS 130


>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +   N  G+ V EA    EA +        + LV+D  M  +  +
Sbjct: 5   KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              VR++   ++V +  L  +      + G   G + ++ KPF+ + L   +  + +  +
Sbjct: 65  -EVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTR 123

Query: 123 SKDENQFLDA 132
            +D  + L A
Sbjct: 124 QQD-GEVLKA 132


>gi|221199375|ref|ZP_03572419.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221205723|ref|ZP_03578738.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211588|ref|ZP_03584567.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221168949|gb|EEE01417.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221174561|gb|EEE06993.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180660|gb|EEE13063.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 241

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|220907491|ref|YP_002482802.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
 gi|219864102|gb|ACL44441.1| response regulator receiver modulated serine phosphatase
           [Cyanothece sp. PCC 7425]
          Length = 379

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D     R +     N  G+ V  A    E  E   K  LP+ ++ D  M    
Sbjct: 1   MFRILVIDDDPTTRLLLSRKLNQQGYGVEVARDGVEGLEQAAK-FLPHLVICDWMMPMID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P     F   L  + D    I G  AGA+ FL KP   + LR  ++   
Sbjct: 60  GLEVCRRLKADPRFATTFFVLLTAKDDIADRIQGLDAGADEFLSKPLEMDELRARVQAGL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  E  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +      G+ V  A     A+E       PN +V+D  + G+   
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFV-NFSPNLVVLDMILPGIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++V V  L  + +    +     GA+ +++KPF  + L   ++ + +   
Sbjct: 66  -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 123 SKDEN 127
            ++ +
Sbjct: 125 GEEPD 129


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +     E+       + +++D  +  + 
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDIS 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      V V  +    +    + G   GA+ +++KPF+ + +   ++ + 
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117

Query: 119 QMQKSKDENQFLD 131
                + E +  +
Sbjct: 118 ARTSGESEVEKTE 130


>gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A +    +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQIL--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     D+ Q
Sbjct: 116 RRSNWTDQQQ 125


>gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 227

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + ++        GF          A     KE LP  +++D  + G+  
Sbjct: 5   KKIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKI-KEELPLLIILDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    TDV +  L  + D    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  MTLCKEVRK---FTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLR 120

Query: 120 MQKSKD 125
             + ++
Sbjct: 121 RYEHEE 126


>gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 231

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
             +L+VD    + ++ + +F   GF  V  A+S   A + CE++  P+ +++D  M G+ 
Sbjct: 4   KRILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQE-PDMMILDVMMPGMD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A ++++   + + V  L    + E    G   GA+ +LLKPF  + L F ++ + + 
Sbjct: 63  GF-AALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKR 121

Query: 121 QKSKDENQ 128
              + E +
Sbjct: 122 VYPEKERK 129


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  A++  EA    ++   P+ +V+D  +  +  F
Sbjct: 9   RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQR-RRPDLIVLDVMLPDMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G+   V YL      E  + G   G + ++ KPF+ + +   +R + + 
Sbjct: 68  EIVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRR 125


>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V E  +  EA    +     +  ++D  + G+ 
Sbjct: 1   MSKVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R       + + +L  +V  +  +     GA+  + KPF+   L   ++ L + 
Sbjct: 61  GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRR 120

Query: 121 QKSKD 125
              + 
Sbjct: 121 VNVQR 125


>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 228

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + ++        GF    A       E   ++  P+ +V+D  + G+
Sbjct: 1   MKQRILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAA-RDSKPDLIVLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           L       +R+    + + V  +  + D    + G   GA+ +++KPF+   L   +R +
Sbjct: 60  LGTEVCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAI 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+      +   ++    GF V  A    +A +  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGA-DIVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     + V V  +  + D    + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQIRA---TSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|265754262|ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263234971|gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1446

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEE-VPDFIITDIMMPRMDGI 1247

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I G + G + ++ KPF+ + L+  +  L + 
Sbjct: 1248 ELIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+AI
Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAI 1331


>gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A +    +   + L++D  M    
Sbjct: 1   MNKILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIV--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     D+ Q
Sbjct: 116 RRSNWTDQQQ 125


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1134

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R+    L  D  + V    S  EA         P  ++ D  M G+  F
Sbjct: 636 RILLADDNPDMREYVERLLRDR-YDVTAVASGEEALHAAISNP-PGLILSDVMMPGLDGF 693

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P    + +  +      E  + G  AGA+ +L+KPF    L   +     M
Sbjct: 694 GLLKELRERPETRTIPLILVSARAGEESRVEGLGAGADDYLIKPFTARELLARVGAHLSM 753

Query: 121 QKSKDENQ 128
            + + + +
Sbjct: 754 SRRRRDAE 761


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R         V  A    EA +   +E   + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKA-REGDYDLILLDVMLPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R +   ++V +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +  
Sbjct: 62  FEVC-RAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRV 120

Query: 122 KSKDENQ 128
           +S++  +
Sbjct: 121 RSREAEE 127


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA +  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  VEVCREVRKK---YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+V+    +  + ++     G+ V  A    +A    E E  P+ +++D  +   
Sbjct: 1   MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAE-ETTPDLVMVDWMLPKV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R      +V +  L    +    + G   GA+ +++KPF+   L   +R +
Sbjct: 60  SGIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAV 119

Query: 118 PQMQK 122
            +  +
Sbjct: 120 LRRIR 124


>gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +  + +      GF    +     A    +++  P+ +++D  + G+    
Sbjct: 3   ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQP-PDLIILDLMIPGLDGLE 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +RQ P   D ++  L  + +    + G   GA+ +++KPF+   L   +R L +  
Sbjct: 62  VCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRRS 121

Query: 122 -KSKDENQ 128
            +   +NQ
Sbjct: 122 LRQGGQNQ 129


>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+++    +R + +       + + EA +  EA +   K+  P+ +++D  +  + 
Sbjct: 1   MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVKQ--PDLVILDLMLPDID 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  +   +  I G   GA+ ++ KPFN   +   ++   
Sbjct: 59  GLSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQL 115

Query: 119 QMQKSKDEN 127
           +  K  DEN
Sbjct: 116 RRYKQYDEN 124


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA    E E  P+ L++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAES-PDILILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQ 128
            +   E+Q
Sbjct: 119 TELTVESQ 126


>gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           ORS278]
          Length = 1231

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL D +  +R   R L     + V        A E   +   P+ ++ D  M  +   
Sbjct: 642 RILLADDNADMRDYVRRLLVTR-YDVEAVADGKAALEAIARAK-PDLVLSDVMMPQLDGM 699

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A VR     + V V  L      E  + G +AGA+ +L+KPF+   L   +    +M
Sbjct: 700 QLLARVRADAQFSTVPVILLSARAGEESRVEGMQAGADDYLIKPFSARELLARVEAHLKM 759

Query: 121 QKSKDEN-QFLDA 132
            + + E  + L A
Sbjct: 760 ARLRAEATERLRA 772


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V  A+    A +   KE   N +++D  +  + 
Sbjct: 1   MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKA-KEQQFNAILLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  +  + D    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GMTVLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 SQ 121


>gi|113477434|ref|YP_723495.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110168482|gb|ABG53022.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 351

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M +    +L+VD +   R +        G M+  A+   +A E   +    + +++D  M
Sbjct: 1   MKNDRGNVLVVDDNQFNRDLLARRVKRQGHMISSASDGFQALEMV-RNHSFDLVLLDIMM 59

Query: 57  EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +     +  ++  P    + V  +    D + ++     GA  +L KPFN   L+  +
Sbjct: 60  PQMNGYQVLETLKADPALRHIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPILLKARI 119

Query: 115 RELPQMQKSKDENQ 128
               + ++ +D+ Q
Sbjct: 120 NACLEKKRLRDQEQ 133


>gi|186685939|ref|YP_001869135.1| response regulator receiver modulated PAS/PAC sensor protein
           [Nostoc punctiforme PCC 73102]
 gi|186468391|gb|ACC84192.1| response regulator receiver modulated PAS/PAC sensor protein
           [Nostoc punctiforme PCC 73102]
          Length = 294

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD +    ++   +    G+ +    +   A +  +    P+ +++D  M  +   
Sbjct: 36  NILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAP-PDLILLDIMMPEMNGY 94

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   H++   +  D+ V ++    +    +     G   ++ KPF+ E +   +     +
Sbjct: 95  EVCQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSEEEVFARVENNLTI 154

Query: 121 QKSKDEN 127
           ++ + + 
Sbjct: 155 RRLQKQL 161


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    GF    AT   +A E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCRELRQRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 225

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +R++   +  + GF VFEA +  +A +   +E   +  V+D  M  + 
Sbjct: 1   MNKVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEK-IDLCVLDIMMPQMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   VR+     D+ +  L  + +  + + G   GA+ +L KPF  + L   ++ L 
Sbjct: 60  GYEFCKQVRR--YYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALL 117

Query: 119 QMQK 122
           +  K
Sbjct: 118 RRYK 121


>gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
 gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D +  +R++ R L    G+ V EA    E  +  +     + +V+D  M  +  
Sbjct: 3   TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDSS--IDLIVLDIMMPNMNG 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           +   ++     ++V + +L  +        G  +GA+ +L KPF+   L   ++ L +  
Sbjct: 61  YQTCLKLRE-TSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119

Query: 121 --QKSKDENQFLD 131
              K K E   LD
Sbjct: 120 QVYKGKKEETLLD 132


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +    + GF V EA    EA +    +     +++D  M  +  +
Sbjct: 5   KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R +   + V V  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  -EVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121


>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 229

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    VR + +   ++ GF V  A    EA     +E  P+ +++D  M  +  
Sbjct: 4   KTILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGRE-QPDLILLDVMMPKLDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F   ++      +  V  L   +     + G   GA+ ++ KPF    L   +R + + 
Sbjct: 63  F-QFMQTFRKRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRR 120


>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA      E  PN +++D  + G+  
Sbjct: 5   QRILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFP-EFKPNLVLLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YSVCREMRAQSP---VPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             + 
Sbjct: 121 RYQQ 124


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +  F   GF V  A    EA          + +++D  +  +  F
Sbjct: 4   RILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASD-FDLVILDIMLPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   + V +  L  + D    + G   GA+ ++ KPF+   L   +R + +  +
Sbjct: 63  TVC-REIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTR 121

Query: 123 SKDENQFLDA 132
             + ++   A
Sbjct: 122 VAESSRSRTA 131


>gi|209528443|ref|ZP_03276873.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
 gi|209491122|gb|EDZ91547.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
          Length = 352

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD + I R +        G+ V  A++  EA +   +    + +++D  M  +    
Sbjct: 8   VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIM-RSTALDLVLLDIMMPQMNGYQ 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++       + V  +    D + ++     GA  +L KPFN   LR  +    + +
Sbjct: 67  VLESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKK 126

Query: 122 KSKDENQ 128
           + +D+ Q
Sbjct: 127 RLRDQEQ 133


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E   KE   + +++D  +  +  
Sbjct: 3   RKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKA-KENKYDIILLDLMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
             +S+ E +
Sbjct: 119 RARSEHEEK 127


>gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  M G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMMPGGISGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++    +++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKTIDA 136


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R      G+ V  A    EA E   K+  P+  ++D  M  +   
Sbjct: 2   KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKD-RPDLAILDVMMPKLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D+ V  L       + +AG  AGA+ +L KPF  E L   +R L +   
Sbjct: 61  DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120

Query: 123 SK 124
            +
Sbjct: 121 LE 122


>gi|182415603|ref|YP_001820669.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842817|gb|ACB77069.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 376

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD   I  ++ +      G  V  A +  EA +   K   P+ +++D  M  +   
Sbjct: 5   SILVVDDQPINVQLLKRKLEREGIQVTAAYNGLEALDLVRKTK-PDLILLDVMMPDMDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                ++   L   + + ++      E  I G   GA  ++ KP + +     ++   + 
Sbjct: 64  EVCQRLQADELTRSIPIIFITARTSKEGKIEGLNVGAVDYITKPIDLDETLARVQTQLRF 123

Query: 120 ---MQKSKDENQFL 130
               ++  D  + L
Sbjct: 124 VTINREMLDLQRRL 137


>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 266

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    V +V        GF+V  A     A +  E+   P+ +V+D  + G+  
Sbjct: 40  RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAER-FHPDLIVLDRMLPGIDG 98

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      DV +  L      ++ IAG  AGA+ ++ KPF+   L   ++ + +
Sbjct: 99  SEVCRRIRSRG---DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILR 155

Query: 120 M 120
            
Sbjct: 156 R 156


>gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 266

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++        GF V  A    + RE        + +V+D  M G   
Sbjct: 33  KRLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGH-FDLIVLDIMMPGDDG 91

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +++   +++ +  L    D    I G   GA+ ++ KPFN   L   ++ + +  
Sbjct: 92  FTLC-KEVRTKSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRY 150

Query: 122 K 122
           +
Sbjct: 151 E 151


>gi|332708948|ref|ZP_08428919.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332352490|gb|EGJ32059.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 373

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L VD S     + + L  + G+ +  A +   A E  E    P  +++D  M  +  F 
Sbjct: 15  ILAVDDSPDNLFLLQTLLEEEGYEITLAENGRVALERIESSP-PELVLLDVMMPEMDGFE 73

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +        ++ G   GA+ F+ KP   + L   +R L +++
Sbjct: 74  VTKRIRSNPKLPFIPILLITAYDHPS-VVKGLDMGADDFIRKPVEVDELLARVRSLLRLK 132

Query: 122 KSKDENQFLD 131
            S DE   + 
Sbjct: 133 HSVDERDEIA 142


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V KV        G+ V+ AT+  EA E   ++  P+ +V+D  +  +  F
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDS-PDLIVLDVMLPKMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 64  AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +      GF V EA    EA +   ++     +++D  M  +  +
Sbjct: 5   KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++ +   + V +  L    + +  + G + G + ++ KPF+ + L   +  + + 
Sbjct: 65  -EVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRR 121


>gi|146306182|ref|YP_001186647.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574383|gb|ABP83915.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 243

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V       E       E   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFAVRAVADG-EGLRAALVEEPADLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V V  L    D    + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  FSLCRWIREHQRFAAVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124

Query: 120 MQKSKDE 126
                 E
Sbjct: 125 RASFAKE 131


>gi|260172987|ref|ZP_05759399.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|315921265|ref|ZP_07917505.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695140|gb|EFS31975.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1342

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD +   R   R+      + V  A +  EA E  ++E LP+ ++ D  M  +    
Sbjct: 1095 LLIVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEE-LPDLVISDVMMPQMDGNE 1152

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++Q      + V  L    + E  + G + GA+ ++ KPFN   L   +R+L ++ 
Sbjct: 1153 LCRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIELS 1212

Query: 122  KSKD 125
            +   
Sbjct: 1213 RYHR 1216


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL D    +  + +  F+  G+ V  A +  EA E    + +P+ +++D  M  + 
Sbjct: 1   MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAAD-MPDIVILDVMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++Q+   + V V  L  + D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 60  GF-ETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118

Query: 121 QKSKDEN 127
              + E+
Sbjct: 119 ASQERED 125


>gi|107023338|ref|YP_621665.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690421|ref|YP_836044.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733741|ref|YP_001765688.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|206560945|ref|YP_002231710.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|105893527|gb|ABF76692.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648510|gb|ABK09151.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816983|gb|ACA91566.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|198036987|emb|CAR52908.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 241

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E    E  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAEN-PDVIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQF 129
            +   + Q 
Sbjct: 119 SEFAADPQL 127


>gi|219847541|ref|YP_002461974.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
 gi|219541800|gb|ACL23538.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus aggregans DSM 9485]
          Length = 313

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+ D    +R +   +    GF V  A     A     +E LP+ +++D  + G    
Sbjct: 9   TVLIADDDPNLRFLLSDMLQRAGFDVLVAEDG-SALLQIAQEQLPDIILVDLMLPGVDGY 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R       + +  +    +   ++ G   GA+ ++ KPFN   L   +R L + 
Sbjct: 68  EAIRQLRNDTRTAHLPIIIVTARTNPADVVIGFDTGADDYVTKPFNEAELIARIRSLLRR 127

Query: 121 QKSK 124
              +
Sbjct: 128 TTQR 131


>gi|189351171|ref|YP_001946799.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189335193|dbj|BAG44263.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 241

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + K+ +       F    A     A +  + +  P+ +++D  +    
Sbjct: 1   MK-ILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQE-PDLIILDLMLPKLD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     D ++  L  + +    + G   GA+ +L+KPF+   L   +R L 
Sbjct: 59  GLEVCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 238

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R++ +      G+ + EA     A +          +++D  + G+  
Sbjct: 6   NRILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDY-GLILLDVMLPGIDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ+       V  L  + +    + G   GA+ +++KPF+   + + ++ + +
Sbjct: 65  VEVCNRLRQV---KATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMR 121

Query: 120 MQKSKD 125
              +  
Sbjct: 122 RASATA 127


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +        G+ V  A +   A      E  P+ +++D  +  +  
Sbjct: 28  TKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEE-PDLIIMDVMLPDMSG 86

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  R    G    V +L      E  I G   G + ++ KPF+ + +   +  + +  
Sbjct: 87  FAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRT 146

Query: 122 KSKD 125
           K  D
Sbjct: 147 KIDD 150


>gi|330466987|ref|YP_004404730.1| response regulator receiver modulated diguanylate cyclase
           [Verrucosispora maris AB-18-032]
 gi|328809958|gb|AEB44130.1| response regulator receiver modulated diguanylate cyclase
           [Verrucosispora maris AB-18-032]
          Length = 326

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    + +         GF V  A+   EA E  E++  P+  V+D  M     LE
Sbjct: 11  ILVVDDDEDIARFVEFNLRLHGFDVMLASDGQEALELIERQ-RPDLAVVDLMMPRIDGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P+   + V  L  +   +  + G  AGA+ +L+KPF+   L   +    +  
Sbjct: 70  LTRRLRADPMTAVLPVIMLTAKGMTQDKVNGLSAGADDYLVKPFDTLELLARVTSTLRRN 129

Query: 122 KSKDE 126
           K   E
Sbjct: 130 KEFRE 134


>gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 971

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R     +     + V EA +  E R+   +   P+ +V D  M  +   
Sbjct: 594 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQS-APDLIVSDVMMPVMSGL 651

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R+     D+ V  L    +  + + G   GAN ++ KPF+   L   +    ++
Sbjct: 652 QMLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRL 711

Query: 121 QKS---KDENQFLDA 132
           + +     EN+ L A
Sbjct: 712 RDAAVRAAENERLAA 726


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 9/134 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     + +VD    +R +        G+ V  A S   A     +    + +V+D  M 
Sbjct: 1   MQKAAHIAVVDDHADIRNLVGQYLEQQGYRVSVADSGV-ALRRILERSAVDLVVLDVMMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G        H+R      DV + +L    +    I G   GA+ +L+KPFN   L   +R
Sbjct: 60  GEDGLSVCRHLRA---TMDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIR 116

Query: 116 ELPQMQKSKDENQF 129
            + +   S  + Q 
Sbjct: 117 AVLRRANSVPQQQR 130


>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 233

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R+V         +    A +  EA    +++ + + +++D  M  + 
Sbjct: 1   MQNILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPV-DLIILDIGMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      V + +L    +    I G   G + ++ KPF+   L   +  + 
Sbjct: 60  GFEVCREIRKHSE---VPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 KR 118


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 280

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    +A E    E  P+ +V+D  +  +  F
Sbjct: 36  TILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSES-PDLVVLDVMLPKMDGF 94

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 95  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 151


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  145 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    R      GF V  A           +E   + +++D  + G+  F
Sbjct: 9   RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAA-RERPADLVILDIMLPGMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G+DV +  L  +      + G  +GA+ +L+KPF  E L   +R L + 
Sbjct: 68  EVCRRLRA---GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR 124

Query: 121 QKSKDE 126
             ++ E
Sbjct: 125 HVARTE 130


>gi|323525232|ref|YP_004227385.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382234|gb|ADX54325.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 241

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V KV        G+ V+ AT+  EA E   ++  P+ +V+D  +  +  F
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDS-PDLIVLDVMLPKMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 64  AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+  +  G+ V       EA +   KE  P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLDAEGYEVETVARGDEA-DTWLKERTPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFLD 131
              +     L 
Sbjct: 123 ASPERLATILS 133


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++ +      G+ V EA    +A E  ++    + +++D  +  + 
Sbjct: 1   MKKILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGY-DLVILDIMLPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  +   V V  L    +    I G    A+ ++ KPFN   L   ++ + 
Sbjct: 60  GWSVCREIRRESM---VPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIF 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus
           16]
 gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus
           16]
          Length = 235

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +  E  +  +K   P+ +++D  M G   
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHT-PDLIILDIMMPGDDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + + +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLRRD---SQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQKSKDENQF 129
             +   + Q 
Sbjct: 120 RSQLNPQTQL 129


>gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1349

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-------ELLPNYLVIDES 55
             +L+V+ +  +R   + L + + + V       EA               + + ++ D  
Sbjct: 960  KILIVEDNGDMRDYLKKLLDPY-YEVETVNDGLEALTLIRNVSDHNNNGGMYDLVLTDIM 1018

Query: 56   ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            M      E +  +R  P    + +  +      E  + G  AGA+ +L KPF+   L   
Sbjct: 1019 MPRLDGFELLRSLRNKPETQKIPIIMISARTGEESQVEGLEAGADDYLGKPFSARQLLTR 1078

Query: 114  MRELP---QMQKSKDENQFLDA 132
            +       +M+K +  N+ L+A
Sbjct: 1079 VESHLKLTRMRKVQALNETLEA 1100


>gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Erwinia amylovora CFBP1430]
 gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora CFBP1430]
 gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A    +     + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST--VDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GLDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQF 129
           +     ++   
Sbjct: 116 RRSNWSEQQHL 126


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
 gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
          Length = 224

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R      GF V EA    EA +   KE   + +V+D  M  + 
Sbjct: 1   MVKILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENY-DLIVMDIMMPNLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +V V  L    +    I G   G + +++KPF+ + L   +  + 
Sbjct: 60  GFSACREIRK--THENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAIL 117

Query: 119 QMQKSKDENQFLD 131
           +     ++ + + 
Sbjct: 118 KRTSQSEKKELIK 130


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD   ++ K  +         V  A    EA E   KE   + +++D  + G  
Sbjct: 1   MRKVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKA-KENQYDIILLDVMLPGLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    + V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GFEVCQAIRE---FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIL 116

Query: 119 QMQKSKDENQFLDA 132
           +     D  +   A
Sbjct: 117 RRSAHHDVKEEESA 130


>gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1631

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+VD +  +R   R +    G  V+ A    EA       L P  +V D  M      
Sbjct: 644 KLLVVDDNADLRDYMRRILTAAGHQVYVAADGMEALAAARA-LQPELVVSDVMMPKLDGF 702

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R      ++ V  L      E  + G  +GA+ +L+KPF    L   +    Q+
Sbjct: 703 GLLRALRADDGLREMPVLLLSARAGEEAKVDGLESGADDYLIKPFAARELLARVAGNLQL 762

Query: 121 QKSKDE--NQFLDA 132
            + + E  N+  + 
Sbjct: 763 ARLRRETGNRLREE 776



 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            ++L+V+    VR     + +  G+ V +A     A    E  +  + L  D  M G L  
Sbjct: 1361 TILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVPIDLLFTDVVMPGSLRS 1420

Query: 61   -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118
             E     R+      + V +     D   + AG    G    L KP++RE L   +    
Sbjct: 1421 TELARKARERQ--PGIAVLFTSGYTDNAIVHAGRLDEGV-ELLSKPYSREALARKIEHAL 1477

Query: 119  QMQKSK 124
             +Q ++
Sbjct: 1478 HVQYAR 1483



 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L V+   +VR     L   FG  V EA+   +A +    E   + L+ D  + G    
Sbjct: 1516 RILFVEDDELVRVSTAELLRTFGVEVAEASGAVQALDLL-HEKSFDVLLTDIGLAGASGI 1574

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA-GANSFLLKPFNRETLRFAMRELPQ 119
               +      + + V ++             R  GA+  L KP++   L  A+R   +
Sbjct: 1575 DLAIDATGRESRLRVIFVTGSDAALSPEQQLRLPGASQ-LRKPYDPLDLVNALRGCVE 1631


>gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
 gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + +    GF V EA +  +  E    +   + +++D  M  + 
Sbjct: 1   MAKILLVDDDIELTALLKDILELEGFDVIEANNGQQGLEKV--DNSIDLILLDVMMPVMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++       V  L  + D    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  G-TEMLRRLREAHSTPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLRR 117

Query: 121 QKSKDE 126
            ++ +E
Sbjct: 118 TQASNE 123


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +       F V EA +  EA +   +E     +++D  M  +   
Sbjct: 13  KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 73  EVCREIRKNSK---VPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 129

Query: 121 QKSKDENQFLDA 132
               +    + A
Sbjct: 130 TGQNNPEDVISA 141


>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 242

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFK-FVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNEHKQIQ 143


>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  + R      G+ V  A    EA +     L P+ +++D  +  V  F 
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRA-LQPDLILLDVMLPEVDGF- 62

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ-- 121
             +R +   + V V  L  + D    + G   GA+ ++ KPF+   L   ++   +    
Sbjct: 63  DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122

Query: 122 --KSKDENQF 129
             +   EN+ 
Sbjct: 123 VLREHRENER 132


>gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1846

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +LLVD +  +RK    + ++  F V        A      E +P+ ++ D  M  +    
Sbjct: 1477 VLLVDDNADMRKYLTRILSEH-FQVEAVADGKTALAVAI-EQVPDLILSDVMMPRLDGVE 1534

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             +  +R  P   +V    L      E +I G  AGA+ +L+KPF+ + L   +    QM 
Sbjct: 1535 LLQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHLQMA 1594

Query: 122  KSKDE 126
            K + E
Sbjct: 1595 KLRGE 1599


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  E  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A     A +    E   +++V+D  +  +  
Sbjct: 3   QHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNES-FDFIVLDLMLPEMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ  +     +  L  + D    + G   GA+ +L KPF+   +   +R + +
Sbjct: 62  LEVCKQLRQNKIM--TPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILR 119

Query: 120 MQKSKDENQ 128
             K+   ++
Sbjct: 120 RTKAAKRSE 128


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LLV+ +  + +V        G+ V  A     A +   +E  P+ +V+D  +    
Sbjct: 1   MTTILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLARE-QPDLVVLDWMLPQVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  +RQ        V  L    +    + G   GA+ +L KPF+   L   +R L 
Sbjct: 60  GLEVLRRLRQESP---TPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALL 116

Query: 119 QMQKSKDENQFLDA 132
           +        Q L+A
Sbjct: 117 RRTDLVR--QMLEA 128


>gi|170703741|ref|ZP_02894459.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170131352|gb|EDS99961.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 241

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++      +  + V +A    EA +   K    + +++D  M     L
Sbjct: 2   RVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNGL 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+   G +  V +L  +      I G  AGA+ ++ KPFN   +   ++ L + 
Sbjct: 62  EVLEEIRKQ--GLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRR 119

Query: 121 QKSKDE 126
           Q+  ++
Sbjct: 120 QQLLNQ 125


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R       + V EA     A +   +E     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPKMNGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L  + D E  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121

Query: 121 Q-KSKDENQFLD 131
             K+ +E + L 
Sbjct: 122 IGKAPEEGKLLS 133


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     GF V  A    EA +    E  P+ +++D  + G   +E
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEA-DLRLHETTPDLVLLDWMVPGLSGIE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + V  L    +    + G   GA+ +++KPF+   L   +R L +  
Sbjct: 65  LCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 124

Query: 122 K 122
           K
Sbjct: 125 K 125


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +  + R+     GF V       EA +   +E +P+ +++D  + G   
Sbjct: 3   TRILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEA-DIRLREQIPDLVLLDWMVPGLSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       + +  L    +    + G   GA+ +++KPF+   L   +R L +
Sbjct: 62  IELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121

Query: 120 MQK 122
             K
Sbjct: 122 RAK 124


>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 248

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD     R++     +  G+ V  A    EA E C + + P+ +V+D  M      
Sbjct: 10  TILVVDDEASSRRILETRLSMIGYNVITACDGNEALE-CFRNVEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
              + 
Sbjct: 126 VDKEQ 130


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +      G+ V  A     A E  E E  PN +++D  + G   
Sbjct: 3   QKILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEK-PNLILLDIMLPGKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  VR+     ++ V  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  NEVLREVRK---TQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLR 118

Query: 120 MQKSKDE 126
            ++  DE
Sbjct: 119 REQVPDE 125


>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
 gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V  +     GF    A    +A     +E  P+ +V+D  +     +E
Sbjct: 9   VLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQAL-MLVQEDRPDVMVLDWMLPNLSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   DV +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 68  VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 127

Query: 122 KSKDENQFL 130
           +     Q L
Sbjct: 128 RPSTVGQVL 136


>gi|113476774|ref|YP_722835.1| response regulator receiver protein [Trichodesmium erythraeum
           IMS101]
 gi|110167822|gb|ABG52362.1| response regulator receiver protein [Trichodesmium erythraeum
           IMS101]
          Length = 121

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ S   R++   L  + G  V  A    EA     K   P+ +V+D  M  + 
Sbjct: 1   MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRL-KNTKPDIVVLDIVMPKMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    + V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    V ++        G+ V  A    EA E   +E  P+ LV+D  +  +  F
Sbjct: 27  TILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHRE-QPDLLVLDVMLPKMDGF 85

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ ++ KPF+ + L   +  + + 
Sbjct: 86  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142


>gi|332667187|ref|YP_004449975.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
 gi|332336001|gb|AEE53102.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1381

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +L+V+ +  +R   R       + V EA +  E  E   ++L+P+ ++ D  M      E
Sbjct: 1122 VLVVEDNADIRTYIRRSL-YPDYEVIEAENGQEGLEK-TRKLIPDIIISDVIMPELDGFE 1179

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V+Q      + V  L         + G   GA+ ++ KPF+ + L+  +R L   +
Sbjct: 1180 LCRTVKQEEATAHIPVILLSARSSQMYQVEGYDTGADDYIAKPFSIDLLQARIRNLLNNR 1239

Query: 122  KSKDE 126
            +    
Sbjct: 1240 ERIQR 1244


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD +  +  +        G+    A    EA +  ++E  P+ +++D  M    
Sbjct: 1   MK-VLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRE-RPDIILLDVMMPKID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    ++V +  +    +  + I G   GA+ +++KPF+   +   ++ + 
Sbjct: 59  GFEVCRVIRK---TSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAIL 115

Query: 119 QMQKSKDEN 127
           +  + K EN
Sbjct: 116 RRIQPKTEN 124


>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ +  H +R          GF VFEAT+  EA    ++E   + +++D  M  + 
Sbjct: 1   MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREP-FDVVLLDVMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A      L  +V +  L      E  I G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 60  GFEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR 119

Query: 121 QK--SKDENQFLDA 132
            +   + +++ L +
Sbjct: 120 VEKVKRKDSKRLKS 133


>gi|223934982|ref|ZP_03626901.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223896435|gb|EEF62877.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 213

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R+         GF V  A       E       P+ ++ D  M G+ 
Sbjct: 1   MKKILVIEDQPEMRRSLETTLEMEGFEVLLAEDGRMGLELALAA-RPDLILCDVMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R       +   +L    D +    G   GA+ +L KP  +  L  A+    
Sbjct: 60  GHGLLQVLRADNRTAHLPFIFLTARADKQDARTGMNLGADDYLTKPVAKSDLLAAISS-- 117

Query: 119 QMQKSKDENQFLD 131
           ++Q+++ + + LD
Sbjct: 118 RLQRAEVQKRRLD 130


>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 237

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      ++LLP+ ++ D  M      
Sbjct: 12  RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFGKA-QQLLPDVVITDVMMPRLDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 71  GLLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 130

Query: 121 QK--SKDENQFLDA 132
           Q+   ++  +F DA
Sbjct: 131 QQRLLQEAARFADA 144


>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A     A +  E+E   + +++D  +  V 
Sbjct: 1   MSRILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQY-DAVLLDLMLPEVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +       + V  +  + D    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GMSVLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRR 119

Query: 121 QKSKDENQ 128
              +  N+
Sbjct: 120 YHEQSTNR 127


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
 gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD  + +R + R       F   E  ++ +A      E  P+ +++D  + G   +
Sbjct: 5   KILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDE-RPDLVLLDWMLPGGSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +++      + V  L  +   + +I G   GA+ +L KPF    L   ++ L + 
Sbjct: 64  ELLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRR 123

Query: 121 QKSKDENQFLD 131
            +  ++NQ L 
Sbjct: 124 SQGMEDNQRLA 134


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  R      G  V  A    EA E  +K    + +++D  +    
Sbjct: 1   MARVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEY-DIVLLDVMLPKYD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +D+ +  L  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GYEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAII 116

Query: 119 QMQKSKDENQFLDA 132
           +        +  +A
Sbjct: 117 RRSGKSKRQKREEA 130


>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 224

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R V +      G+ V EA    +A E  + +   + +++D  M  + 
Sbjct: 1   MKRLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQD-FDVIIMDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  +++    ++ V  L    +    + G   G + +++KPF+ + L   ++ + + 
Sbjct: 60  GFSAC-KEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|218708873|ref|YP_002416494.1| DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218321892|emb|CAV17879.1| DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 242

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++        GF V       E     + +  P+ +++D  + G   
Sbjct: 5   TRILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     ++V +  L    D    I G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  FTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123

Query: 122 K 122
           +
Sbjct: 124 Q 124


>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    + ++ +      G+  FEA S   A E   K    + +++D  M    
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEIL-KHNKVDLVILDIMMSDKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ V  L  + +    I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GYEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALL 119

Query: 119 QMQKSKD 125
           +  +S  
Sbjct: 120 RRVESLR 126


>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + ++  +     G+         E  +   +    + +++D  + G+  
Sbjct: 3   QKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTY-DLIILDIMLPGMNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +    G+   V  L      E+++ G + GA+ ++ KPF    L   +  + +  
Sbjct: 62  FEVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRT 121

Query: 122 KSKD 125
            +K+
Sbjct: 122 GNKE 125


>gi|312130834|ref|YP_003998174.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907380|gb|ADQ17821.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1291

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LLLV+ +  +R++ + + + + + + EAT   E      +E+ P+ ++ D  M  +    
Sbjct: 1046 LLLVEDNREIRQMIKEILSPY-YQIREATDGMEGWNMA-QEISPDLIISDIMMPQMDGIE 1103

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++  P  + + V  L           G   GA++++ KPF+   L   ++ L   +
Sbjct: 1104 LCGKLKTDPKTSHIPVILLTARATVAYKQEGYETGADAYITKPFSPNLLLVRIKNLLHQR 1163

Query: 122  K 122
            K
Sbjct: 1164 K 1164


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  + +     E        +++++D  + G+ 
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQY-DFIILDVMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D  +  L  + +    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QK 122
            K
Sbjct: 120 LK 121


>gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae
           Ep1/96]
 gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia pyrifoliae DSM 12163]
 gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A    +     + L++D  M    
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST--VDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQF 129
           +     ++   
Sbjct: 116 RRSNWSEQQHL 126


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +  +     GF+V  A    E      +E  P+++++D  +     
Sbjct: 26  KRVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEE-RPDFIILDLMLPKLDG 84

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 85  IEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 142

Query: 120 MQKSKDENQFLD 131
                 + +  +
Sbjct: 143 RTVIHGQEEKQE 154


>gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 212

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA +  E++ +P+ ++ D  M  +  
Sbjct: 10  KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  +R     + +   +L  +   +  I G R GA+ +++KPF  E L   +     
Sbjct: 70  YAFVEKLRDDARTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129

Query: 120 M 120
            
Sbjct: 130 R 130


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +++D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVILDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+     + + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|86146088|ref|ZP_01064414.1| Response regulator [Vibrio sp. MED222]
 gi|85836035|gb|EAQ54167.1| Response regulator [Vibrio sp. MED222]
          Length = 242

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++        GF V       E     + +  P+ +++D  + G   
Sbjct: 5   TRILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     ++V +  L    D    I G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  FTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRV 123

Query: 122 K 122
           +
Sbjct: 124 Q 124


>gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120]
 gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120]
          Length = 225

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA    EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEA-ERIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  + L F +R L + 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +++D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVILDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+     + + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|254412249|ref|ZP_05026024.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181215|gb|EDX76204.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 414

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    V+ V ++L       V  A +  EA     K   P+ ++ D  M    
Sbjct: 1   MAKILVVDDDLTVQLVLKNLLTSQNHDVAIANNGEEALRQV-KLFHPDLIICDWIMPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    V+  P     F+  L M       + G  AGA+ F+ KP + E L   +R   
Sbjct: 60  GLEVCRQVKADPELATTFIILLTMRDQITDRVQGLDAGADEFISKPIDMEELLARVRAGL 119

Query: 119 QMQKSKDEN 127
           + ++   + 
Sbjct: 120 RSRQLTQQL 128


>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    +R++     +  G+ V  A    EA +   K+  P+ +V+D  M      
Sbjct: 10  TILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLF-KDYEPDLVVLDVMMPKLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 69  GVCQELRKD---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125

Query: 121 QKSKD 125
              + 
Sbjct: 126 IDKEQ 130


>gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 946

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R     +     + V EA +  E R+   +   P+ +V D  M  +   
Sbjct: 569 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQS-APDLIVSDVMMPVMSGL 626

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R+     D+ V  L    +  + + G   GAN ++ KPF+   L   +    ++
Sbjct: 627 QMLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRL 686

Query: 121 QKS---KDENQFLDA 132
           + +     EN+ L A
Sbjct: 687 RDAAVRAAENERLAA 701


>gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 243

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++        GF V               E   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLETYLTRAGFQVRATADGA-GFRQALNEAPSDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  E  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    +R V R      GF V  A +  E  E   +E  P+ +++D ++ G+   
Sbjct: 4   TILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRE-RPDLVILDLNLPGMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +DVF+  L    +    +AG R GA+ +++KPF+   L   +  + + ++
Sbjct: 63  EVAARLRQE-SDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRR 121

Query: 123 SKD 125
           S  
Sbjct: 122 SAS 124


>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    VR+         G+ V  A    EA         P+ +++D  M  +    
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A       G DV +  L      +  + G  AGA+ +++KPF  + L   +R L +  + 
Sbjct: 64  ATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123

Query: 124 K 124
           +
Sbjct: 124 E 124


>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R+  +    D  F V  A++  E  +  EK  LP+ ++ D  M      
Sbjct: 7   KILLVDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKN-LPDLVITDVMMPQVDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R+ P    + V +L  +      I G +AG +++L KPF+ E L   +  L + 
Sbjct: 66  QFLQKLREEPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVNNLLER 125

Query: 121 QKSKD 125
           + S  
Sbjct: 126 RASAQ 130


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA E    E  P+ +++D  +  + 
Sbjct: 1   MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAEN-PDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-RTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QKSKDENQF 129
            +   + Q 
Sbjct: 119 SEFAADPQL 127


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    VR++ R  F      +  AT   EA E  EKE  P+ +++D  M  + 
Sbjct: 33  MK-VLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKE-QPDVVILDVMMPQLD 90

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  R++    D  +  L  + +    + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 91  GFEAC-REIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149

Query: 121 QKSKDENQFLDAI 133
            + K + +   A+
Sbjct: 150 LQPKPKVEDEAAL 162


>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
 gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA +    E   + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMA-TENHYDMILLDIMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +D+ +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQHIRE---FSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +  + R+     GF V       EA +   +E +P+ +++D  + G   
Sbjct: 3   TRILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEA-DIRLREQVPDLVLLDWMVPGLSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       + V  L    +    + G   GA+ +++KPF+   L   +R L +
Sbjct: 62  IELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121

Query: 120 MQK 122
             K
Sbjct: 122 RAK 124


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + ++  +  GF    A     A +    +   + +V+D  +  +  
Sbjct: 3   QRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLA-ADDSFDLIVLDLMLPEMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ+ +     +  L  + D    + G   GA+ +L KPF+   +   +R + +
Sbjct: 62  LEVCKSLRQLKV--STPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILR 119

Query: 120 MQKSKDENQ 128
                 +++
Sbjct: 120 RSAVPKQDK 128


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  ++L+V+    +  + R+     G+ V       EA +   KE  P+ +++D  + G 
Sbjct: 2   MKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEA-DLLLKERSPDLVILDWMLPGL 60

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       + +  L    +  + + G   GA+ +++KPF+   L   +R L
Sbjct: 61  SGIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRAL 120

Query: 118 PQM 120
            + 
Sbjct: 121 LRR 123


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  + +     E        +++++D  + G+ 
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQY-DFIILDVMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D  +  L  + +    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QK 122
            K
Sbjct: 120 LK 121


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++        G+ V    +  EA     ++   + +V+D  + G+  
Sbjct: 4   QHILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARV-RDGAFDCVVLDVMLPGMSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  R +   +DV + +L    +    I G   G + ++ KPF+   +   ++ L +  
Sbjct: 63  FEAC-RAIRAFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRY 121

Query: 122 KSKDEN 127
           +   E 
Sbjct: 122 RPSAEQ 127


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    + +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IDLVVLDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+     + + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 1427

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R     L  +  + V        A E   K+  P+ ++ D  M  +   
Sbjct: 650 RVLLADDNPDMRDYVARLLGES-YEVDAVGDGVAALEAAWKQ-RPDLVISDIMMPRLDGL 707

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R      DV V +L      E  + G  AGA+ +L KPF+   L   +R    +
Sbjct: 708 SLLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 767

Query: 121 QKSKDENQFLD 131
            + + E    +
Sbjct: 768 AEVRREALRTE 778



 Score = 84.9 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62
            +L+V+ +  V +    L +D G+    A+S  +A +  +++    N ++ D  M G+   
Sbjct: 1307 VLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGMDGV 1366

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDF--EKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+     ++ V           +    G        L KP++ E L   +R   
Sbjct: 1367 ALGREIRKR--LPNLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRAM 1419


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R    D G+ V  A    E     E E   + LV+D  + G+  
Sbjct: 5   RRVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLE-EGSWDALVLDLMLPGIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRS 123

Query: 122 KSKDENQFLDA 132
            + + N  +DA
Sbjct: 124 DALERNARIDA 134


>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 221

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +R+V        G  V EAT+  EA +        + +++D  +  + 
Sbjct: 1   MARVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLL---PQADVVILDLMLPQLT 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + I G   GA+ ++ KPF+   +   +R L + 
Sbjct: 58  GWQVAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRR 117

Query: 121 QKSKDEN 127
              K E 
Sbjct: 118 SGFKQEL 124


>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
 gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         +A    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDT-YAPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCRDIRSR---SNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +      G+ V  A    EA +   KE+  + +++D  + 
Sbjct: 1   MKKLFKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E+ + G   GA+ +L KPF+   L   ++
Sbjct: 60  KLSGEEVCSKIRES---SNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|158338214|ref|YP_001519391.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158308455|gb|ABW30072.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 545

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +++VD +    +V     +  G+ V  A S   A +       P  +++D  M  +  F 
Sbjct: 7   IMVVDDTPANLEVISETLSSAGYRVAAAISGERALKRLHTHP-PALILLDIQMPVMDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      ++ + ++    D + ++ G   GA  ++ KPF    L   +R   Q+
Sbjct: 66  VCRQIKANAATANIPIIFITARSDTQSILHGFEMGAVDYISKPFQEAELLARVRTHLQL 124


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +++D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVILDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+     + + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
 gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +    +      G+ ++EA +  EA E   KE   + +++D  M  + 
Sbjct: 1   MYNILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQI-KEHDIHLVLMDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      ++ V  L  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  GITAMLKIREET-NLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRR 118


>gi|153873722|ref|ZP_02002207.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
 gi|152069810|gb|EDN67791.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
          Length = 299

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD      KV         F +  A     A E    +  P+ +++D  M  +  F
Sbjct: 146 KILLVDDMPANIKVLFTFLKKQNFELLIAEDGEMALESVLWDH-PDLILLDVMMPKMDGF 204

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     D+ V ++    D    I G + GA  ++ KPF+ E +   ++    +
Sbjct: 205 EVCQRLKENEKTKDIPVIFMTALSDTIDKIKGFKLGAVDYISKPFDVEEVLLRIKTHLTI 264

Query: 121 QKSKDENQF 129
              + + Q 
Sbjct: 265 HHLQQQLQL 273


>gi|22299208|ref|NP_682455.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295390|dbj|BAC09217.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 288

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +    +V   L    G+ V  A S   A    E E  P+ +++D  M  +   
Sbjct: 12  RILIVDDTPENVEVLTTLLQLEGYDVRGAISGQMALMGIEAEP-PDVILLDIMMPDMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P    + + ++    D    +     G   ++ KPF +  +   ++    +
Sbjct: 71  ELCQTLKQNPKTKHIPIIFISALDDVFDKVKAFEIGGADYITKPFQQAEVLARVKNQLTI 130

Query: 121 QKSKDENQFLDA 132
              + + +  +A
Sbjct: 131 ALLQRKLRQKNA 142


>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
 gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
          Length = 241

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     N+ GF V  A+   +  +        + LV+D  + G    
Sbjct: 7   KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQ-MDRLLTRENYHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  L  + D    I G   GA+ +L KPFN   L   +R + + + 
Sbjct: 66  SICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRG 125

Query: 123 SKD 125
            + 
Sbjct: 126 VEA 128


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LLV+    +     +     G+ V  A +   A E  E+   P+ +V+D  +    
Sbjct: 1   MTTVLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN--PDIVVLDILLPEID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ      V +  L  + D    I G   GA+ +L KPF+   L   ++ L 
Sbjct: 59  GLEVCRRLRQRSS---VPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALL 115

Query: 119 QMQKS 123
           + +  
Sbjct: 116 RRRSL 120


>gi|269925905|ref|YP_003322528.1| response regulator receiver protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789565|gb|ACZ41706.1| response regulator receiver protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 278

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +  + +      G+ V  A S   A +       P+ +++D  + G  
Sbjct: 1   MSRILVVDDEPALLDLLKEHLTMEGYTVDTAPSGEYALDLMRIRP-PDLVILDIMLPGID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   D+ V  L  +     ++AG  +GA  ++ KPF+ + L   +R   
Sbjct: 60  GYEVCTRMQADPKLQDIPVIMLTAKSLTSDLVAGYESGAEDYVTKPFDIDELLIRIRARL 119


>gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
 gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
          Length = 238

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++ +      G++V EA +  +A +    E   + +++D  M      
Sbjct: 6   TVLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMAL-EKDYHCILLDLMMPEKDGV 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                ++       +  L  + +    + G  AGA+ +++KPF+   +   ++ + +   
Sbjct: 65  AVAT-ELRETKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSA 123

Query: 123 S 123
           +
Sbjct: 124 A 124


>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    VR+         G+ V  A    EA         P+ +++D  M  +    
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHL-SGTHPDAVIMDVMMPRLDGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A       G DV +  L      +  + G  AGA+ +++KPF  + L   +R L +  + 
Sbjct: 64  ATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123

Query: 124 K 124
           +
Sbjct: 124 E 124


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA E       P+ LV+D  M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELI-ASDRPDALVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 123 SKDENQ 128
            +DE +
Sbjct: 121 PEDEAE 126


>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 220

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    +R++   L    G+ V  A +  EA     +    + +++D  M  + 
Sbjct: 1   MTHILIAEDEFDIRELLTELLESSGYHVTSAANGMEAL-KLHQSATFDLMILDIMMPYLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +Q+   +   + +L    D +  + G   G + ++ KPF+   L   +  + + 
Sbjct: 60  GFEVA-QQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRR 118

Query: 121 QKSKDENQF 129
            ++ DE Q 
Sbjct: 119 IRTNDEEQL 127


>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
 gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
          Length = 237

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  V +      G+ V  A    EA E    E  P+ +++D+ +   +
Sbjct: 1   MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASEN-PDLVLLDQMLPE-I 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+   +   V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 59  EGTEVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRR 118

Query: 121 QKS 123
           Q +
Sbjct: 119 QDA 121


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A +  EA    +     N +++D  M     +
Sbjct: 5   RVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKY-NLIILDLMMPKVDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 64  EVCRRLRNK---TNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRR 120


>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R         V  A    EA E  +     + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKY-DIILLDLMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +DV +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LEVCQQIRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
               + + Q
Sbjct: 119 RAHLEAKTQ 127


>gi|224536541|ref|ZP_03677080.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521797|gb|EEF90902.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1493

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R + R++ +   + + EA +  E  +    E +P+ ++ D  M  +   
Sbjct: 1227 SILIVEDNRELRSLLRNILSKK-YTILEAANGEEGLKLA-SEAIPDMIISDVMMPVMDGL 1284

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +++      V +  L  +   +  I     G + ++ KPF+   L+  +  L   
Sbjct: 1285 EMIKRIKENKDICYVPIILLSAKASLDDRITALEQGIDDYITKPFSSSYLKARIASLFTK 1344

Query: 121  QKSKDE--NQFLDA 132
            +K   E   + L A
Sbjct: 1345 RKQLQEIFMKQLSA 1358


>gi|16329618|ref|NP_440346.1| CheY family protein [Synechocystis sp. PCC 6803]
 gi|1652101|dbj|BAA17026.1| CheY subfamily [Synechocystis sp. PCC 6803]
          Length = 147

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M+++LLV+ S   R++   +  D G+ V  A    EA E   +   P+ +V+D  M  + 
Sbjct: 27  MNAVLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKL-QNFSPDLVVLDIVMPRMN 85

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G R GA++++ KPF    L   +++L 
Sbjct: 86  GYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145

Query: 119 Q 119
           +
Sbjct: 146 R 146


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L++D    +  + R      G+ V  AT      +   +E  P+ +V+D  M     
Sbjct: 5   KKILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQE-RPDLVVLDLMMPKLSG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +RQ        V  L    +    I G   GA+ ++ KPF    L   ++ + +
Sbjct: 64  NDVCRIIRQESE---TPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLR 120

Query: 120 MQKSK 124
             + +
Sbjct: 121 RTEHR 125


>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
 gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA E  EK + P+ +V+D  +     
Sbjct: 3   QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEK-VQPDLIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDE 126
             +  +E
Sbjct: 120 RSQFVNE 126


>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 134 RRTNQRTQIQ 143


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 240

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD    +R++ +      G++V EA +  +A E    E   + +++D  M     L
Sbjct: 8   SVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEK-SLEKEYHCILLDIMMPEKDGL 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R+        +  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 67  EVCAEIRERAA---TPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 123

Query: 121 QKS 123
            ++
Sbjct: 124 SQA 126


>gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V EA    +  +    ++LP+ +V+D  +  V 
Sbjct: 1   MPRVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKG-QAFALQMLPDLIVLDLMLPQVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     ++ +  L      +  + G  AGA+ ++ KPF  E L   +R L 
Sbjct: 60  GLTICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALL 119

Query: 119 QMQKSKDENQFLDAI 133
           +      +      I
Sbjct: 120 RRTDRMPQAARHAEI 134


>gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF V  A    +A +    +   + L++D  M    
Sbjct: 1   MNKILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVL--DNTIDLLLLDVMMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIDTLKELRQQ---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDENQ 128
           +     D+ Q
Sbjct: 116 RRSNWTDQQQ 125


>gi|163742633|ref|ZP_02150019.1| response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384218|gb|EDQ08601.1| response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 422

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA S   A E CE +  P+ ++ D  M G+  
Sbjct: 18  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDP-PDLILSDWMMPGMNG 76

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R        +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 77  LEFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGER 136

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 137 ILRMQRELSEKNRI 150


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +        G+ V  A +   A      E  P+ +++D  +  +  
Sbjct: 4   TKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEE-PDLIIMDVMLPDMSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  R    G    V +L      E  I G   G + ++ KPF+ + +   +  + +  
Sbjct: 63  FAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRT 122

Query: 122 KSKD 125
           K  D
Sbjct: 123 KIDD 126


>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  M G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMMPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++    +++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKTIDA 136


>gi|238028314|ref|YP_002912545.1| putative two-component system, response regulator [Burkholderia
           glumae BGR1]
 gi|237877508|gb|ACR29841.1| Putative two-component system, response regulator [Burkholderia
           glumae BGR1]
          Length = 241

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  R    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 60  DGLTALRRLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 231

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            +LLVD    VR+  +        F V  A++  EA +   +E +P  ++ D  M     
Sbjct: 6   KVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAWDLLNQE-IPELVISDIMMPQVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R+      + V +L         I G  AG +++L KPF+ E L   ++ L +
Sbjct: 65  YQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIE 124

Query: 120 MQK----SKDENQFLDAI 133
            ++    +  EN  L+ I
Sbjct: 125 RRRQSLQATSENARLEEI 142


>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 233

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++      + G+    A    EA    E +   + +V+D  M  +
Sbjct: 1   MTRTILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQP-FDLIVLDVMMPRM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  +  + +    I G   GA+ ++ KPFN   L   ++ L
Sbjct: 60  DGLELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSL 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +       F V EA    EA +    +     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCREIRKNSK---VPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLD 131
               ++   L 
Sbjct: 122 TGQTNKEDVLS 132


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+++    VR+  R      G  V  A +  +  E   +   P+ +++D  + G+ 
Sbjct: 1   MPRVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELL-RSFRPDAVILDLMLPGMP 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R       V +       D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GLEVCRRIRAH---HQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD    +R++ +      G++V EA +  +A E    E   + +++D  M     L
Sbjct: 6   SVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEK-SLEKEYHCILLDIMMPEKDGL 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R+        +  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCAEIRERAA---TPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 121

Query: 121 QKS 123
            ++
Sbjct: 122 SQA 124


>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    VR+  R      G+ V  A    EA    E+E  P+  V+D  M    
Sbjct: 1   MK-ILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQE-QPDLTVLDVMMPQLD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLGVCRELR--SSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116

Query: 119 QMQKSKDENQ 128
           +  ++    Q
Sbjct: 117 RRARADAIQQ 126


>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ R      GF V  A     A     ++  P+ +++D  +    
Sbjct: 1   MAFVLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATA-RRLIRQERPDLVILDLMLPDED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R  P    + +  L   +D    I G   GA+ +++KPFN   +   ++ + 
Sbjct: 60  GFDIARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVL 119

Query: 119 QMQKSKDENQFLD 131
           +          L+
Sbjct: 120 RRVSGGTVRNRLE 132


>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
 gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+         G+ V EA S  +A      E LP+ +V+D  + G+   
Sbjct: 7   KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALL-TEFLPDLVVLDLMLPGIDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      D  +  L  +      I G   GA+ +++KPFN   L   ++ + + + 
Sbjct: 66  EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125

Query: 123 SKDENQ 128
             +  +
Sbjct: 126 RYEAGR 131


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A+   E  +   KE L + +++D  + G+  
Sbjct: 3   KKVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKL-DVIILDLMLPGMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +  +  L  + D    I G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  MDVCKQLRL--GKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|317479680|ref|ZP_07938804.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|316904181|gb|EFV26011.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 885

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+ +  + ++   L     + V  A +  EA    + E   + +V D  M  +   
Sbjct: 633 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNED-IDLIVSDVMMPVMDGI 690

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F  +V+     + + V  L  +   E        GA++F+ KPFN   L   +R L + 
Sbjct: 691 EFCRYVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKY 750

Query: 121 QKSKDEN 127
           ++ K  +
Sbjct: 751 KERKAHD 757


>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 224

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +  E  +   +      +++D  +  + 
Sbjct: 2   MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+    + V V  +    +    + G   GA+ +++KPF+   +   ++ + 
Sbjct: 62  GWSLLKTIRE---TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAIL 118

Query: 119 QM 120
             
Sbjct: 119 SR 120


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  AT+  E  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
 gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 246

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R+  +    D  F+V  A +     E  ++  LP+ ++ D  M      
Sbjct: 21  RLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQN-LPDLVITDIMMPEVDGY 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R  P    + V +L  +      I G +AG +++L KPF+ E L   ++ L + 
Sbjct: 80  QFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLER 139

Query: 121 QKSKDEN 127
           + +  + 
Sbjct: 140 RAATRQE 146


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    VR+  R      G+ V  A    +A E  EKE  P  +++D  M  + 
Sbjct: 1   MK-ILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKE-QPTLVILDVMMPQMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLR--STGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLF 116

Query: 119 QMQKSKDE 126
           +   ++ +
Sbjct: 117 RRSITESQ 124


>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
 gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
          Length = 234

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+VD    +R++         F V EA +     E    E  P+ +++D  +     
Sbjct: 4   NRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDE-RPDLVLLDWMLPSVTG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     +V +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLR 122

Query: 120 MQKSKDENQFLD 131
              S    + ++
Sbjct: 123 RASSVAAEKAIE 134


>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 228

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V  +     GF V  A +  EA     +E  P+ +V+D  +     +E
Sbjct: 7   VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEAL-VAVRETPPDVIVLDWMLPHVSGIE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  L    +    + G   GA+ ++ KP++   L   +R   +  
Sbjct: 66  VCRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRV 125

Query: 122 KSKDENQFLD 131
           +     + L+
Sbjct: 126 RPSTVAERLE 135


>gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P]
 gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P]
          Length = 232

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + ++  +   + G+ +F AT+  EA +  +K  +P+ +++D  M  +   
Sbjct: 7   KILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKN-IPHLILLDIMMPEMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++    +V + +L    +    +AG  AGA+ ++ KP   + L   ++ L + 
Sbjct: 66  EACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKSLLRR 125

Query: 121 QKSKDENQ 128
            KS+ +N+
Sbjct: 126 LKSEKQNE 133


>gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 246

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R +        G+ + +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ V  L      +  + G  AGA+ +L KPF    +   +R L 
Sbjct: 60  GFTVCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score =  144 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA +    E   + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMA-TENAYDMVLLDIMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +++ +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKD 125
              +  
Sbjct: 119 RTAASQ 124


>gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 230

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +R + R      GF V EA    +     + +  P+ +++D  M  + 
Sbjct: 1   MTKILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADS-PDLILLDIGMPEID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V + +L    D    I G   G + ++ KPF+   L   ++ + 
Sbjct: 60  GTEVCRRLRRESR---VPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 248

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   +VR V        G+ V EA    +A E   +E  P  +V+D  M  V   
Sbjct: 16  RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREK-PALVVLDIEMPRVGGL 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V  +      +  + G   GA+ +L KPFN+E L   +R L + Q 
Sbjct: 75  AVLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQA 134

Query: 123 SKDE-NQFLD 131
           + +   Q L 
Sbjct: 135 ATETPIQRLQ 144


>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 249

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    VR+  +    +FGF V  A++  +A +  ++   P  ++ D  M      
Sbjct: 25  KLLLVDDEPGVREAVKEYLAEFGFTVQVASNANDAWQMLQQNT-PELVISDIMMPKVDGY 83

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R  P    + V +L         I G +AG +++L KPF+ + L   ++ L + 
Sbjct: 84  QFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVQNLLER 143

Query: 121 QKSKDEN 127
           + +  E+
Sbjct: 144 RAASSED 150


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLVD    +  + R      GF V  A     A E  +K   P+ +++D  +  +  F 
Sbjct: 6   ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSP-PDLMILDVMLPELDGFE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +       + +  L    +    I G   GA+ ++ KPFN   L   ++ + +  + 
Sbjct: 65  VCKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRTRH 124

Query: 124 K 124
           +
Sbjct: 125 Q 125


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGV 59
           M  +L+ +   ++R          G+ V + ++  +A +   E +   +  ++D  M G+
Sbjct: 1   MKRILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    R     + + +  L  +      + G   GA+ ++ KPF+   L   +  + +
Sbjct: 61  DGFEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|172061354|ref|YP_001809006.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993871|gb|ACB64790.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 241

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|163737971|ref|ZP_02145387.1| response regulator receiver modulated serine phosphatase
           [Phaeobacter gallaeciensis BS107]
 gi|161388587|gb|EDQ12940.1| response regulator receiver modulated serine phosphatase
           [Phaeobacter gallaeciensis BS107]
          Length = 423

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA S   A E CE +  P+ ++ D  M G+  
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDP-PDLILSDWMMPGMNG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R        +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 78  LEFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGER 137

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 138 ILRMQRELSEKNRI 151


>gi|298675086|ref|YP_003726836.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288074|gb|ADI74040.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
          Length = 296

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++        G+    A +  EA    E +   + +++D  M      
Sbjct: 9   KILIVDDEPELVELLADYL--DGYNTIAAYNGQEAINIIESDN-IDVILLDVMMPDINGF 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   H++       + V  +    D +  I G  +GA+ FL KP + E L   +R   ++
Sbjct: 66  EVCTHIKNDDSLNYIPVLMITALSDHDNKIHGLDSGADDFLTKPVDGEELNARVRSALRI 125

Query: 121 QKSKDEN 127
           +K  DE 
Sbjct: 126 KKLHDEL 132


>gi|294775873|ref|ZP_06741372.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294450242|gb|EFG18743.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1344

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211

Query: 122  KSKDENQFLDAI 133
            K       L  I
Sbjct: 1212 KKIASLLALADI 1223


>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F          A     +   P+ +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFR-FKPDLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+     +  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRRE---NNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDEN 127
              +   N
Sbjct: 121 RYTATQSN 128


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  +       E        +++++D  + G+ 
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQY-DFIILDVMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D  +  L  + +    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QK 122
            K
Sbjct: 120 LK 121


>gi|254412104|ref|ZP_05025879.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181070|gb|EDX76059.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 450

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD +               F V  A     A E  +    P+ +++D  M G+  F
Sbjct: 10  KLLIVDDNPTNLGFLFEYLTQSDFKVLVALDGESAIEQVQYA-QPDLILLDVMMPGLDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++  P   D+ V ++    D    + G + GA  ++ KP   E +   ++    +
Sbjct: 69  TTCKHLKSDPSTQDIPVIFMTALSDTVDKVQGFKIGAVDYITKPLQPEEVLCRVQTHLAL 128

Query: 121 QKSKDEN 127
           +  +   
Sbjct: 129 RNLQKRL 135


>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 204

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +R+    L N  GF V EA +  E  E   +E  P+ ++ D +M  + 
Sbjct: 1   MKRILVIDDEAKLRRQFAELLNLEGFAVSEARNGREGVELARRE-RPDLVMCDITMPEMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R  P  + V   +L    + E +  G   GA+ +L+KP     L  A++   
Sbjct: 60  GHRVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPVEPADLIAAVQARL 119

Query: 119 QMQKSKDENQ 128
           +  ++ +  +
Sbjct: 120 RRAQAANPAR 129


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|150003100|ref|YP_001297844.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931524|gb|ABR38222.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1340

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1090 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1147

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1148 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1207

Query: 122  KSKDENQFLDAI 133
            K       L  I
Sbjct: 1208 KKIASLLALADI 1219


>gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3]
 gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3]
          Length = 241

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++         F V  A    E  +    +  P+ +++D  + G   
Sbjct: 5   KQVLVVDDDKDIRELLAEYLTKNNFSVITAGDGIE-MDAHLAQTEPDLIILDVMLPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ    + V +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FILCQRIRQ---TSMVPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALLR 120

Query: 120 MQKSKDEN 127
                +E 
Sbjct: 121 RNHFVNEQ 128


>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 249

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA E  EK + P+ +V+D  +     
Sbjct: 16  QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEK-VQPDLIVLDVMLPKKDG 74

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 75  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 132

Query: 120 MQKSKDE 126
             +  +E
Sbjct: 133 RSQFVNE 139


>gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1368

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             LL+VD ++ +        N   + V  A +  +A +  E     + ++ D  M  +   
Sbjct: 1118 KLLVVDDNYEIVDFLSSHLNK--YQVAVAYNGKQALDILE-NDSFDLIISDVMMPEIDGI 1174

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  + + +  I G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 1175 QLCKKIKQNINTCHIPVILLTAKNETQHQIKGLEAGADDYVTKPFSMSLLTAKVQSILKS 1234

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1235 RRRLKE 1240


>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 233

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ R      GF V EA     A E          +V+D  +  +   
Sbjct: 5   KILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDY-AVIVLDLMLPELDGR 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R+     D  V  L    D    I G   GA+ +++KPF+   L   ++ L + 
Sbjct: 64  EVCAQLRKQ---KDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKR 120


>gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 220

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EAR+  E E   +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETE-QVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNQHAQIQ 143


>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 242

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNQHAQIQ 143


>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
 gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
           [Lyngbya sp. PCC 8106]
          Length = 246

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R+  +    D  F V  A +  E  E  ++  LP+ ++ D  M      
Sbjct: 21  RLLLVDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQN-LPDLVITDIMMPEVDGY 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R+ PL   + V +L  +      I G +AG +++L KPF+ E L   ++ L + 
Sbjct: 80  QFLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLER 139

Query: 121 Q 121
           +
Sbjct: 140 R 140


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         EA    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDS-YSPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +D  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAK---SDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDEN 127
             ++  + 
Sbjct: 121 RYQAPRQE 128


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  A       +    E   +++++D  +  + 
Sbjct: 1   MKKILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSED-FDFIILDVMLPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +  +  L  + D    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GIEITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QKSK 124
            + +
Sbjct: 120 LEPR 123


>gi|330807931|ref|YP_004352393.1| two-component Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376039|gb|AEA67389.1| Putative two-component Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 243

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V               +   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLDTYLSRAGFQVRTTPDGA-GFRQALNDAPSDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRQAHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +    R      G+ V  A     A E  E +  P+ L++D  +  + 
Sbjct: 1   MNKVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDT-PDILLLDIMLPQLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + V V  L    +    ++G  +GA+ +L KPF  E L   MR + + 
Sbjct: 60  GL-EVLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 NEVR 122


>gi|298483673|ref|ZP_07001848.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298270243|gb|EFI11829.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1344

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1211 RKLLQQ 1216


>gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
 gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 40B]
          Length = 1128

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 785 SELRETHDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 844

Query: 124 K---DENQFLDA 132
           +    EN+ L++
Sbjct: 845 EMRHMENKVLES 856


>gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium cellulovorans 743B]
 gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium cellulovorans 743B]
 gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium cellulovorans 743B]
          Length = 366

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 1   MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
           M       +L+VD +    K+   +  + G+ ++  TS  EA E   K +  N +++D  
Sbjct: 1   MKDNSQIKILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMV-KNIRFNLILLDVM 59

Query: 56  MEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           M  +     I  ++      D+ + +L    D E ++     GA  +L+KPFN + L   
Sbjct: 60  MPEMDGYEVIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGAYDYLIKPFNPKELLSR 119

Query: 114 MRELPQMQKSKDENQ 128
           ++   +++ +++  +
Sbjct: 120 VKTHIELKFARENLE 134


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R++     +  G+ V  A S  EA E   +   P+ +++D  +  +  F
Sbjct: 8   TIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|95931140|ref|ZP_01313865.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
 gi|95132830|gb|EAT14504.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
          Length = 454

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+    +  D GF V  +     A +   +E  P+ +++D  M G+ 
Sbjct: 1   MKHILVVDDERNIRESITGILQDEGFQVTTSCDGATALDAVTEEK-PDLVLLDIWMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      D+ V  +      E  +   + GA  F+ KP + E L   +    ++
Sbjct: 60  GIETLTQIRNQYDDLQVIMMSGHATIETAVTATKLGAYDFIEKPLSLEKLLVCIHNALKV 119

Query: 121 QKSKDENQFLDA 132
            +  +EN+ L A
Sbjct: 120 HELVEENKTLKA 131


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      DV +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD   ++ K  R      G+ V  A    EA E   KE   + +++D  + G  
Sbjct: 1   MARVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERA-KEREYDVVLLDVMLPGHD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +++ +  L  + D    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GFEVCQTIRE---FSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAII 116

Query: 119 QMQKSKD 125
           +    K 
Sbjct: 117 RRNNKKS 123


>gi|224536597|ref|ZP_03677136.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521853|gb|EEF90958.1| hypothetical protein BACCELL_01472 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1364

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LLLV+ +  + KV     +   + + +AT+  EA E  EK      ++ D  M  +  
Sbjct: 1115 KKLLLVEDNEELLKVMADSLSRE-YHIIKATNGKEAIEQLEKTKDIVVVISDVMMPVMNG 1173

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E   ++++      + +  L  +     +I G  AGA+ ++ KPF    L   ++ L +
Sbjct: 1174 IELCHYMKKQDEWLHIPIILLTAKSSESDIIEGYEAGADDYITKPFQLTLLLVKIKSLLK 1233

Query: 120  MQKSKDEN 127
             +++  +N
Sbjct: 1234 NKENLLKN 1241


>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 233

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
 gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
          Length = 235

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 6   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|88602714|ref|YP_502892.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
 gi|88188176|gb|ABD41173.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
          Length = 393

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+VD    +R+  ++     G+ V EA    +A E  E+    + +++D  M G    
Sbjct: 7   RLLIVDDDPAIREFLKNRLMMEGYEVSEAEDAEKALERLEEHPDTDLILLDVIMPGASGF 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +++      + V  +      +      R GA  +L KPF+   +   +     +
Sbjct: 67  DLLRTLKEDRRYCQIPVIMVTALGLVQDKELAFRLGAGDYLTKPFDTREMLARIGTHITL 126

Query: 121 QKSKD----ENQFLDAI 133
           +K  D     NQ L  I
Sbjct: 127 KKKNDAITHTNQVLSTI 143


>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 242

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNEHKQIQ 143


>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
 gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +RK+ +       F V EA    EA +   K+   + ++ D  M  +  F
Sbjct: 5   KIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPKINGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + V +  L  + +    + G   G + ++ KPF+ + L   +  + +   
Sbjct: 65  -DVVKEIRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSN 123

Query: 123 SKDENQFLDA 132
           +    + L A
Sbjct: 124 NLSTGEVLKA 133


>gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 262

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + ++ +   +  GF          A +   + + P+ +++D  + G+    
Sbjct: 3   ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRF-RLIQPDLIILDLMIPGLDGLE 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A VRQ     D ++  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 62  VCARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRR 120


>gi|218778401|ref|YP_002429719.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759785|gb|ACL02251.1| response regulator receiver modulated diguanylate cyclase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 319

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      KV +    D  + +  A +  +A E    E  P+ +++D  M  +   
Sbjct: 6   RILIVDDERQNIKVLKDFLRD-DYKIMAAKTGEQALEAARSEHPPDLILLDIVMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + + ++           G   GA  ++ KPF    ++  ++   Q+
Sbjct: 65  DLCRILKEDEKTMHIPIIFVTGLGSTNDEAKGFELGAVDYITKPFRPVIVKARIKTHIQL 124

Query: 121 QKSKDENQFLDAI 133
           ++  D    L +I
Sbjct: 125 KRKSDLLDRLASI 137


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR   R   +  G+ V  A    +A E  +KE  P  +++D  M G+ 
Sbjct: 24  MK-ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKE-QPALVILDVMMPGMD 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G D  +  L    +    + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 82  GLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
 gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
          Length = 237

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + K+ +       F    A     A +  +++  P+ +++D  +    
Sbjct: 1   MK-ILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQ-APDLIILDLMLPKLD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     D ++  L  + +    + G   GA+ +L+KPF+   L   +R L 
Sbjct: 59  GLEVCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|167585829|ref|ZP_02378217.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 241

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
 gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
          Length = 980

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            + +VD   +  +V  +      + +  A++  EA    EK   P+ +++D  M  +   
Sbjct: 725 KIFVVDDEPVNIQVLINHLTLQNYAISIASNGLEALAQVEKGYKPDIILLDVMMPKMTGY 784

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R++    ++ +  L  +     ++ G  +GAN +L KP ++  L   ++   Q+
Sbjct: 785 EVCRKLREVFPVNELPIVMLTAKNQVSDLVEGLESGANDYLTKPISKHELIARLKMHLQL 844

Query: 121 QKS 123
            K 
Sbjct: 845 SKL 847


>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 231

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    + GF V  A++  E  +  ++   P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQST-PDLVISDVMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R+ P    + V +L  +      I G +AG +++L KPF+ + L   +  L   +
Sbjct: 64  FLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLLTRR 123

Query: 122 KSK 124
            SK
Sbjct: 124 NSK 126


>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
 gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G++V EA    EA +   ++     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIREHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
            +S +    +DA
Sbjct: 122 TQSTESGDVMDA 133


>gi|294495691|ref|YP_003542184.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292666690|gb|ADE36539.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 285

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD       +     +   + +  A S  E  +  E E   + +++D  M G+   
Sbjct: 8   KILIVDDEPQNLDLMEAYLSHL-YEITLAESGEECLQKVE-EKDIDLILLDIMMPGMSGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++      + +  +    + E  I     GA+ FL KP NR  L   ++ L ++
Sbjct: 66  DVAKTLKESESTRHIPIIMVTALSEKEDRIKSIEVGADDFLTKPVNRVELLTRVKSLLRI 125

Query: 121 QKSKDEN 127
           +   DE 
Sbjct: 126 KSLHDEL 132


>gi|294647220|ref|ZP_06724819.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|292637507|gb|EFF55926.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
          Length = 1344

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1211 RKLLQQ 1216


>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 225

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 231

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            +LLVD    VR+  +      G F V  A++  +A E  EKE +P+ ++ D  M     
Sbjct: 6   KILLVDDEPGVRESVQAYLEYSGDFNVKVASNANQAWELIEKE-IPDLIISDIMMPQVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R+ P    + V +L         I G  AG +++L KPF+ E L   ++ L +
Sbjct: 65  YQFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGCDAYLSKPFDPEELEAIVKNLLE 124

Query: 120 MQ----KSKDENQFLDAI 133
            +    K+  E+  L+ I
Sbjct: 125 RRKVSIKASSESVKLEEI 142


>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +  R +     + V  A++  EA +    + + + +++D  M  + 
Sbjct: 1   MMRVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLY-DAVFDLVILDVMMPHID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G ++ V  L  + D E  + G   GA+ +L KPF+ + L   +R L + 
Sbjct: 60  GLSLLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRR 119

Query: 121 QKSK 124
            + +
Sbjct: 120 SEGR 123


>gi|237714923|ref|ZP_04545404.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445248|gb|EEO51039.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1344

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1211 RKLLQQ 1216


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ R      G+ V  +    EA       L P+++++D  + G+   
Sbjct: 5   KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNA-LKPDFVLLDVMLPGLDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V V  L  + +    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  QVCREIRKK---SNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRR 120

Query: 121 QKSKDENQFLDAI 133
               ++   +  +
Sbjct: 121 LGQSNQQAEVKEV 133


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++     R+V  +  N  G+ V  A +  +       E  P+ +V+D  +     +E
Sbjct: 6   VLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGL-LVVAEDAPDVIVLDWMLPHVSGIE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + +  L    +    + G   GA+ +++KP+    L   +R   +  
Sbjct: 65  ICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124

Query: 122 KSKDENQFL 130
           +     Q L
Sbjct: 125 RPSKVGQVL 133


>gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 744

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L  D +  +R+  R L     + V  A     A     ++  P+ ++ D  M G+   
Sbjct: 225 RILCADDNADLREYLRSLL-AADYDVRIAADGATALRSARQDP-PDLVITDIMMPGMDGL 282

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       V V  L      E  + G  AGA+ +L+KPF+   L+  +    ++
Sbjct: 283 TLLQALRGDARTRTVPVILLSARAGQEARVEGLDAGADDYLVKPFSPAELQARVGAHLRL 342

Query: 121 QKSKDENQ 128
              + E Q
Sbjct: 343 AMLRQETQ 350



 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +         +   FG  V  A    +A    + E  P  +++D  M G+   
Sbjct: 604 RILVVDDNTDSADTTAMVLQAFGAQVGVARDGRQALAMLD-EFAPAVMLVDIGMPGMDGH 662

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P G  V +  +      E       AG +  L+KP +   L   +  L + 
Sbjct: 663 EVARRVRSAPSGQGVVLIAMTGWGQDEDRRHSHEAGFDHHLVKPVDFAALEQLLVSLARR 722

Query: 121 QKSK 124
           ++ +
Sbjct: 723 RQRR 726


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A    +A         P+ +V+D  M G+   
Sbjct: 8   RILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAV-IVASNFEPHVVVLDVMMPGMDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G DV V  L  + + +  + G   GA+ +++KPF+ E L   ++   + Q
Sbjct: 67  EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQ 125


>gi|312797029|ref|YP_004029951.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
 gi|312168804|emb|CBW75807.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
          Length = 240

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVIDDDQELRDLLRDYLTRQGIEVSVLHDAAS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 KS 123
           +S
Sbjct: 122 RS 123


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R++     +  G+ V  A S  EA E   +   P+ +++D  +  +  F
Sbjct: 8   TIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|160885098|ref|ZP_02066101.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483]
 gi|156109448|gb|EDO11193.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483]
          Length = 1325

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1131

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1132 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1191

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1192 RKLLQQ 1197


>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
          Length = 227

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +  + G+ V        A     +E  P+ +++D  + G+  F
Sbjct: 4   RILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQF-QEHNPDLVLLDVMLPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D  +  L    D   ++ G  AGA+ ++ KPF  + L   +R   + 
Sbjct: 63  DVCRAIRRV---SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119

Query: 121 QKSKDENQFLD 131
           ++    ++ L 
Sbjct: 120 REDSQADEGLS 130


>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 229

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+       + GF V  A++  E  ++ ++   P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNT-PDLVISDVMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R+ P    V V +L  +      I G +AG +++L KPF+ + L   +  L   +
Sbjct: 64  FLKQLREDPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLLSRR 123

Query: 122 KSKDENQFLDAI 133
            +K   +  + I
Sbjct: 124 LTKATGEESETI 135


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  +       E        +++++D  + G+ 
Sbjct: 1   MKKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQY-DFIILDVMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D  +  L  + +    I G   GA+ +L KPF+   +   M+ + + 
Sbjct: 60  GLEITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119

Query: 121 QK 122
            K
Sbjct: 120 LK 121


>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
 gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
          Length = 233

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++++VD    +R +      + G+ V +A +  +A E  EKE + + +++D  M  +  
Sbjct: 4   NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKV-DLIILDIMMPNMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +      ++ +  L  + +    I G  AGA+ ++ KPFN   L   ++   +  
Sbjct: 63  IEACTKIREE-KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRY 121

Query: 122 K 122
           K
Sbjct: 122 K 122


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+VD    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQ-RIDLVVLDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+     + + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +      G+ V EA    EA +        N LV+D  M  +  +
Sbjct: 5   KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + V +  L  +   +  + G   G + ++ KPF+ + L   +  + +   
Sbjct: 65  -EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRT- 122

Query: 123 SKDENQFLDA 132
            + E + ++A
Sbjct: 123 VQTEGEQIEA 132


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRSR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|126031095|pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D53a And Y102c
          Length = 127

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++   + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLAWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+R+  +  D+ V  L    + E  + G   GA+  + KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+++    VR   R      G  V  A +  +  E   +   P+ +V+D  + G+ 
Sbjct: 1   MPRVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQL-RSFRPDAVVLDLMLPGMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R       V +       D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GLEVCRRIRAHD---QVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVL 116

Query: 119 QMQKSKDENQ 128
           +      ++Q
Sbjct: 117 RRVGGTADDQ 126


>gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica]
          Length = 239

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R +      + GF V  A +  +  +        + +V+D  + G   
Sbjct: 5   NKILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQ-MDRLLTRESISLIVLDLMLPGEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       V +  +    +    I G   GA+ ++ KPFN   L   +R + + Q
Sbjct: 64  LSVCQRLRNQNNSVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123

Query: 122 KSK 124
            +K
Sbjct: 124 ANK 126


>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
 gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +   +  G+ V EA    +A +    +     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L  + D +  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIRRH---STVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRR 121

Query: 121 QKS 123
             +
Sbjct: 122 SGA 124


>gi|170691903|ref|ZP_02883067.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170143187|gb|EDT11351.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 241

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|160884659|ref|ZP_02065662.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483]
 gi|156109694|gb|EDO11439.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483]
          Length = 1346

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD +   R   R+      + V  A +  EA E  ++E LP+ ++ D  M  +    
Sbjct: 1099 LLVVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEE-LPDLVISDVMMPQMDGNE 1156

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++Q      + V  L    + E  + G + GA+ ++ KPFN   L   +R+L ++ 
Sbjct: 1157 LCRLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIELS 1216

Query: 122  KSKD 125
            +   
Sbjct: 1217 RYHR 1220


>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+ V +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKG-QALALQLQPDLIMLDLMLPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
 gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +R++   +     F V  A  V +A    +++  P+ +++D  + G   +
Sbjct: 5   NVLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQE-PDLILLDWMLPGVSGV 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E+   +++     D+ +  +    + E  I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 64  EWARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRR 123

Query: 121 QKSKDEN 127
              + + 
Sbjct: 124 SNRQSKL 130


>gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+   ++ +  R      G     A    EA +       P+ +V+D  + GV    
Sbjct: 14  ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEA-DRLALRHRPDLVVLDWMLPGVDGLA 72

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R         V  L    + +  +     GA+ +L KPF+ + L   ++ L + 
Sbjct: 73  LCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR 129


>gi|330997905|ref|ZP_08321739.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329569509|gb|EGG51279.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1370

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+V+     R           F V EA    E  E   +  LP+ +V D  M  +  
Sbjct: 1112 KKILVVEDHDEFRHFLVEQLQK-DFCVVEARDGVEG-ELAARTELPDLIVSDLMMPRMDG 1169

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++     + +    L      +  I G  AGA+S++ KPFN E L+  +R+L +
Sbjct: 1170 MELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIE 1229

Query: 120  MQKSKDEN 127
             ++ + + 
Sbjct: 1230 QKERRQKM 1237


>gi|295084690|emb|CBK66213.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1344

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1211 RKLLQQ 1216


>gi|262406809|ref|ZP_06083358.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262355512|gb|EEZ04603.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1325

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1131

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1132 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1191

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1192 RKLLQQ 1197


>gi|209516015|ref|ZP_03264875.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503475|gb|EEA03471.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 241

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 238

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+V+    + ++ R++    GF+    ++  +A       L P+ +++D  + G+
Sbjct: 1   MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADAL-RVVTVLQPDLVILDLMLPGL 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +RQ  L  D ++  L    +    I G   GA+ +L KPF+   L   +R L
Sbjct: 60  DGLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRAL 119

Query: 118 PQMQKSKDENQFL 130
            +     +++  L
Sbjct: 120 LRRSLRGEQSDHL 132


>gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1343

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R+       +  + +  A +  EA     KE   + ++ D  M  +   
Sbjct: 1098 NILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIV-KEQEIDLILTDVMMPVMDGL 1155

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + +  L  + D ++ + G + GA+ ++ KPF+   +   +R L + 
Sbjct: 1156 QLCKQIKQNLRTCHIPIIILSAKTDLKEQLEGLQVGADDYIPKPFSMAVIVAKIRNLFRT 1215

Query: 121  Q 121
            +
Sbjct: 1216 R 1216


>gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
 gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
          Length = 231

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  +     +  G+ V  AT+  EA +    + + + ++ D  M  + 
Sbjct: 1   MTHILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAV-DLIITDIMMPQMD 59

Query: 61  E-----FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                  +  +R+          ++  +      I     GA+ +L KPF+   L   ++
Sbjct: 60  GYDFIDAVLQLREDQ-----PFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVK 114

Query: 116 ELPQMQKSKDENQ 128
            L +  + K   Q
Sbjct: 115 NLLRRIQPKKAGQ 127


>gi|186682101|ref|YP_001865297.1| response regulator receiver modulated serine phosphatase [Nostoc
           punctiforme PCC 73102]
 gi|186464553|gb|ACC80354.1| response regulator receiver modulated serine phosphatase [Nostoc
           punctiforme PCC 73102]
          Length = 396

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 11/143 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D   IVR V +    + G+    A +  E     +  L P  ++ D  M    
Sbjct: 1   MFKILVIDDDPIVRTVLKKTLQNQGYDTSVAKNGEEGIRQAQL-LRPALIICDWMMSQLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLM----EVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            LE    +R  P     F   L        + E  + G  AGA+ F+ KP     L+  +
Sbjct: 60  GLEVCRRIRTDPELATTFFILLTAKGAARGEEEDRVRGLDAGADEFISKPIEMNELKARV 119

Query: 115 RELPQMQK----SKDENQFLDAI 133
           R   ++ +     + + + L+ +
Sbjct: 120 RAGLRLHQLNQDLQSQKEVLETL 142


>gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus
           10329]
          Length = 235

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +   A      +  P+ +++D  M G   
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGG-AMWQLLNDHHPDLIILDIMMPGEDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQKSKD 125
             +S  
Sbjct: 120 RSQSTA 125


>gi|302334934|ref|YP_003800141.1| response regulator receiver protein [Olsenella uli DSM 7084]
 gi|301318774|gb|ADK67261.1| response regulator receiver protein [Olsenella uli DSM 7084]
          Length = 303

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+       +   +   + + V  A     A +  ++E  P+ +++D  +    
Sbjct: 1   MKKILVVEDDPASLTLITEILKGYDYTVVSALDGRSALDVSKREN-PDLIILDVMLPALN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R M    +  +  L +  +  + I    AGAN FL KPF R  L   ++ L 
Sbjct: 60  GYQVCERLRSMSQFRNTPIIMLTVLNEDSQRIRALEAGANGFLSKPFKRVELLTRIKALL 119

Query: 119 QMQKSKDENQFLDAI 133
             Q + DE   L+ +
Sbjct: 120 SAQVNSDEMVSLNTV 134


>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G+MV EA    EA +   ++     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+    + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREVRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121

Query: 121 QKSKDENQFLDA 132
                 N  L+A
Sbjct: 122 TLGAVGNDSLEA 133


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     GF V  A    EA +    E  P+ +++D  + G   +E
Sbjct: 11  ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEA-DLRLHETTPDLVLLDWMVPGLSGIE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + V  L    +    + G   GA+ +++KPF+   L   +R L +  
Sbjct: 70  LCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 129

Query: 122 K 122
           K
Sbjct: 130 K 130


>gi|153809460|ref|ZP_01962128.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185]
 gi|149127920|gb|EDM19142.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185]
          Length = 1338

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +    G+ +    +  EA     +E  P+ ++ D  M  +  
Sbjct: 1078 QRILIVEDNDDLRNYLVDMLRT-GYNIQSCPNGKEAL-IIIREFNPDLVISDIMMPEMGG 1135

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A ++     + + V  L    D + M+ G   GA++++ KPF+   L+  ++ +  
Sbjct: 1136 DELCATIKGDLEMSHIPVVLLTALGDEKHMLEGLEIGADAYITKPFSVGILKATIKNILT 1195

Query: 120  MQKSKDE 126
             +     
Sbjct: 1196 NRALLRR 1202


>gi|115376892|ref|ZP_01464113.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825368|ref|YP_003957726.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366071|gb|EAU65085.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398440|gb|ADO75899.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 989

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD +  +R     L     F V       +A EF  +E  P+ ++ D  M   G  
Sbjct: 618 RVLVVDDNADMRAYIVGLLQPS-FAVEAVADGVKALEFL-REQTPDLILSDVMMPRLGGF 675

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VR       V    L      E  + G  AGA+ +L+KPF+   L   +R   +M
Sbjct: 676 GLLREVRAKAEWKAVPFIMLSARTGEEASVEGFEAGADDYLVKPFSARELLARVRSSLEM 735

Query: 121 QKSKDENQFLDA 132
            + + E    +A
Sbjct: 736 ARLRREAAVREA 747


>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 237

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +++LP+ ++ D  M      
Sbjct: 12  RLLLVDDEPGLRTAVQAYLEDEGFDVTTAEDGEEGFIKA-QQMLPDLVISDVMMPRLDGF 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 71  GLLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQR 130

Query: 121 -QKSKDENQFLD 131
            Q+   E     
Sbjct: 131 QQRLLQEAARFA 142


>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G+ V EA    +A +   KE   + +++D  M  +   
Sbjct: 5   KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  ETCKTIR---RYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRR 121

Query: 121 QKSKDENQFLDA 132
                  + L+A
Sbjct: 122 GSGTSTGEILEA 133


>gi|212692193|ref|ZP_03300321.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855]
 gi|212665314|gb|EEB25886.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855]
          Length = 1373

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+    +R   + LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 1113 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1170

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L + 
Sbjct: 1171 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1230

Query: 121  QKSKDE 126
            +    +
Sbjct: 1231 RTELKQ 1236


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    + ++        GF +  A +  EA    EKE + + +V+D  M 
Sbjct: 1   MKEQMHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPV-DLVVLDIMMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +  F     +RQ    + + + +L      E  I G   GA+ +++KPF+   L   + 
Sbjct: 60  DMDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIE 116

Query: 116 ELPQMQKSKDENQ 128
              +  +     +
Sbjct: 117 TTLRRIRGLSLKR 129


>gi|126658533|ref|ZP_01729680.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
 gi|126620120|gb|EAZ90842.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cyanothece sp. CCY0110]
          Length = 416

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 8/139 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD      KV      + G  +  AT+   A +       P  +++D  M  +  
Sbjct: 8   KHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQV-ANDPPELILLDVLMPEIDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++  P   D+ + ++    D    + G   GA  ++ KPF  E +   +    Q
Sbjct: 67  FETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFETEEVIARINTHLQ 126

Query: 120 MQKS----KDENQFL-DAI 133
           ++      + +NQ L +A+
Sbjct: 127 LRYLSKTVEQKNQQLTEAL 145


>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
          Length = 239

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ +       +++ EA +   A E    E   + +++D  M G+   
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMAL-EKEYDVILLDVMMPGMDGM 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 65  EVCKEIREK---KATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 134 RRTNQRTQIQ 143


>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 246

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R+  +    D  F+V  A +     E  ++  LP+ ++ D  M      
Sbjct: 21  RLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQN-LPDLVITDIMMPEVDGY 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R  P    + V +L  +      I G +AG +++L KPF+ E L   ++ L + 
Sbjct: 80  QFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLER 139

Query: 121 QKSKDEN 127
           + +  + 
Sbjct: 140 RAATRQE 146


>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    EA E    E  P+ +V+D  +  +  F
Sbjct: 11  TILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSES-PDLVVLDVMLPKMDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 70  AVCRRLRAESC---VPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRR 126


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|326800045|ref|YP_004317864.1| AraC family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326550809|gb|ADZ79194.1| two component transcriptional regulator, AraC family
            [Sphingobacterium sp. 21]
          Length = 1349

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD    +R+  R   +   ++V    +  +A +      +P+ ++ D  M  +  
Sbjct: 1097 KRILVVDDDIDIREFLRRELSPA-YLVNTYANGEDAYKSML-NAVPDLVISDVMMPIMDG 1154

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+ PL   V +  L  + +    + G   GA+ +++KPFN + L   ++ L +
Sbjct: 1155 MILCKKIRENPLTHHVPIVLLTAKGEDNHQLQGLGLGADLYIVKPFNMDVLTENIKSLLR 1214

Query: 120  MQKSKDENQF 129
             ++    N+ 
Sbjct: 1215 NREIVRVNER 1224


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF V  A     A    ++E  P+ +V+D  +  +  F
Sbjct: 15  RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEE-PDLVVLDVMLPDMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         + +L    D    + G   G + ++ KPF  E +   +R + +   
Sbjct: 74  TVARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133

Query: 123 S-KDEN 127
           + +DEN
Sbjct: 134 ATQDEN 139


>gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 256

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++ V        G+ V+ A     A       + P+ +++D  + G+  F
Sbjct: 22  TILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWA-VRPDLVILDIMLPGMDGF 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV++ +L    +    + G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 81  EVCRRIQQDF-DVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSR 139


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF         EA      E  P+ +++D  +  +
Sbjct: 25  MKTKILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNED-PDLILLDVMLPSM 83

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    + V +  L    D   ++ G  +GA+ ++ KPF  + L   +R  
Sbjct: 84  NGVDVCRAIRK---TSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQ 140

Query: 118 PQMQKS 123
            + ++ 
Sbjct: 141 LRRREQ 146


>gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 626

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V        GF V+ A+    A +  + E  P+ +++D  M  +  F 
Sbjct: 11  VLVVDDHASNLAVLSDYLEQVGFEVWVASDGESALQAVQYE-APDIILLDIMMPCLDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               ++  P   D+ + ++    +    + G   GA  ++ KPF  E +   +R   +M 
Sbjct: 70  TCRRLKANPRTKDIPLIFMSALSETVDKVKGLSLGAVDYITKPFQHEEVLVRLRLHLKMS 129

Query: 121 ---QKSKDENQFLDAI 133
              ++ +++N  L  +
Sbjct: 130 ILNKRMEEKNSLLSEL 145


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +  + ++     GF V  A    E       E  P+ +V+D  +  +  
Sbjct: 3   KKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKAL-EGKPDLIVLDLMLPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +         +  L  + D    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 62  IEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121

Query: 122 K-SKDENQF 129
           +    EN+ 
Sbjct: 122 QIIAQENEQ 130


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    + ++        GF +  A++  +A    EKE + + +V+D  M 
Sbjct: 1   MKEQMHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPV-DLVVLDIMMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +  F     +RQ    + + + +L      E  I G   GA+ +++KPF+   L   + 
Sbjct: 60  DMDGFEVCQRIRQ---TSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIE 116

Query: 116 ELPQMQKSKDENQ 128
              +  +     +
Sbjct: 117 TTLRRIRGLSLKR 129


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    + ++        GF V  A +  +A    E E  P+  V+D  +  +  F
Sbjct: 9   KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAED-PDLAVLDVMLPDIDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    + +L  + D +  +AG   G + ++ KPF+ + +   +R + +  +
Sbjct: 68  SVTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127

Query: 123 -SKDENQFLD 131
             ++E+  L 
Sbjct: 128 PLEEEDSRLK 137


>gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++        GF V  A    E R+   +   P+ +++D  M G   
Sbjct: 5   KQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHS-PDLIILDIMMPGEDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    D    + G   GA+ ++ KPF+   L+  ++ L +
Sbjct: 64  FTLCQQIRRD---SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLR 120

Query: 120 MQKSKDENQ 128
             + +   +
Sbjct: 121 RAEFRQPEK 129


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+    + ++ ++      F V       EA E  +     + +++D  + G   L+
Sbjct: 3   VLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSY-DLIILDLMLPGASGLD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+  +  DV V  L    D +  + G   GA+ ++ KPF+ + L   +  + + 
Sbjct: 62  ICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRR 120


>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V        GF V  A +  +A     KE + + +++D  +  +  
Sbjct: 5   KKILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLF-KEEVIHLVILDLMLPRISG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R +   +DV +  L  + + E  I+G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  EEICNKIRAV---SDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +      G+          A+     E  P+ +++D  +  +   
Sbjct: 7   KILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFF-EYKPDLVLLDVMLPHMDGI 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+      + V  L  + +    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRRDSE---IPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 121 QKSKDENQ 128
             ++  ++
Sbjct: 123 YNTESVDR 130


>gi|167765313|ref|ZP_02437426.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
 gi|167696941|gb|EDS13520.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
          Length = 1354

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R           F + EA +  EA E   K    + ++ D  M  +   
Sbjct: 1105 TILIVEDNQEIRHYLSSGLAAL-FNILEAGNGEEALEKL-KNHEADIIITDVMMPVMDGI 1162

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++Q      + V  L  + D +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1163 KLCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFSIAVLTSKIQNMMRT 1222

Query: 121  QK 122
            ++
Sbjct: 1223 RR 1224


>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 240

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60
             +LL++    + ++         + V  A    E  +    KE   + +V+D  +  + 
Sbjct: 3   KQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMD 62

Query: 61  E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R  +  +   V +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 63  GMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122

Query: 117 LPQMQKSKDE 126
           + +  +  ++
Sbjct: 123 VIRRHEQPNQ 132


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLVD    ++K+  H     GF V        A E       P+ +++D  +     
Sbjct: 6   RRILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNT-FEPHLIILDIMLPKLDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     +DV +  L  + D    + G   GA+ ++ KPF    L   +R + +
Sbjct: 65  TEVCRRIRAQ---SDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMR 121

Query: 120 MQK 122
             +
Sbjct: 122 RAQ 124


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A    EA     +EL P+ +V+D  +  +   
Sbjct: 66  RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRT-TRELRPDAVVLDVMLPDMDGL 124

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 125 TVLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 184

Query: 123 SKD 125
           +  
Sbjct: 185 AAA 187


>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 237

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++ +      GF V  A     A    E  + P+ +++D  +     L
Sbjct: 5   RILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAEL-VRPDLIILDIMLPQLDGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R M   +   +  L  + +    + G   GA+ ++ KPF+   +   ++   + 
Sbjct: 64  EVCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRA 123

Query: 121 QKSKDENQ 128
           ++  +  +
Sbjct: 124 KRILEAEK 131


>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 232

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + K         GF V  A +  +A     +   P+ LV+D  M  +  
Sbjct: 4   KKILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNR-WQPDLLVLDVMMPKMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V + +L  + +    I G   G++ +L KPF+   L   +R + +
Sbjct: 63  YEVCRKIREQ---SNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +  V +      G++   AT   E  +   +    + +++D  +  + 
Sbjct: 1   MERILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMS 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ   G  + + +L    D  + +     GA+ ++ KPF    L   +R + 
Sbjct: 61  GLDICKILRQ--EGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVL 118

Query: 119 QMQKSKDENQFLDA 132
           +  +     +   A
Sbjct: 119 RRYQLSGNGEQRTA 132


>gi|294809168|ref|ZP_06767884.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|294443562|gb|EFG12313.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1301

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERA-SSLQPQMIVSDIMMPVMSGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1151 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1210

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1211 RKLLQQ 1216


>gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
 gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
          Length = 230

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A ++ +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYIDSS--IDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQD---HQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDEN 127
           +     ++ 
Sbjct: 116 RRSNWSEQQ 124


>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
 gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
          Length = 247

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA E   +      +++D  +  +    
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +         +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 70  VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +     E+         +++D  +  + 
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDIS 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      V V  +    +    + G   GA+ +++KPF+ + +   ++ + 
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAIL 117

Query: 119 QMQKSKDENQFLD 131
                + E +  +
Sbjct: 118 ARTSGESEVEKTE 130


>gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
 gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           alginolyticus 12G01]
          Length = 1128

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 844

Query: 124 K---DENQFLDA 132
           +    EN+ L++
Sbjct: 845 EMRHMENKVLES 856


>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 238

 Score =  144 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++ +       F + EA     A E        + +++D  M     +
Sbjct: 6   KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDY-DVIILDIMMPEKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     D  V  L  + +    + G   GA+ +++KPF+       ++ L + 
Sbjct: 65  EVCKELRKE---KDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRR 121


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A    E      +E   + +V+D  +     
Sbjct: 3   KKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEE-RFDMIVLDLMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKELRQHKI--HTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 250

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R      GF V  A++   A      +  P  +++D  +  + 
Sbjct: 1   MTKILVVDDEPQILRALRINLTARGFDVTTASTGAGAL-RAAAQCHPEVVLLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +  +   T + V  L    D  + +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  GF-EVLAGLRGWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR 118


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
 gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
          Length = 1386

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R+    L    G+ V       +A E    E  P+ ++ D  M     L
Sbjct: 630 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGRQALEAIRAEP-PDLVISDVMMPRLDGL 688

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R       V V  L      E  I+G +AGA+ +L+KPF    L   +R   Q+
Sbjct: 689 GLVSELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRANIQL 748

Query: 121 QKSKD 125
            + ++
Sbjct: 749 ARLRE 753


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+ D    V ++      + G+ V +A     A E   ++  P  +V+D  +  +  
Sbjct: 8   KRILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQA-RQTSPALIVLDLMLPEMSG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +++      + V  L  + +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 67  LEVCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLR 126

Query: 120 MQKSKDE 126
              +  E
Sbjct: 127 RASNGAE 133


>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
 gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    + +V        GF V  A     A E       P  +++D  M G+ 
Sbjct: 1   MKKILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHS-PQLVILDIMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+        V  L    D +  + G   GA+ ++ KPF  + +   +  + 
Sbjct: 60  GWSVLEKIREKSA---CPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRSAN 121


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1175

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD +  +R + +       ++V  A++  EA      + +P+ +++D  M  +  
Sbjct: 7   NTILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSIA-ADKIPDLILLDVMMPDMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F   + ++      D+ V ++    + E  + G   GA  F+ KPF+   L   + ++ +
Sbjct: 66  FEVCSRLKADICTRDIPVVFITASGNKEHEVKGLDLGAEDFVHKPFHEGVLLARVGQILR 125

Query: 120 MQKSKDENQ 128
             +++++ +
Sbjct: 126 RLQAEEQLR 134



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK----ELLPNYLVIDESMEGVL 60
           L+VD +   R++ R  F  +G    EA +   A     +           V+D  M  + 
Sbjct: 675 LIVDDNSTNREILRVRFGSWGMRPGEAANGSAALSMLHQAKAENDPFVLAVLDMQMPDMD 734

Query: 61  E--FIAHVRQMPLGTDVFVYYL-LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 ++++     D  +  +                G +S L KP     L  ++ ++
Sbjct: 735 GETLGRNIKEDGQLKDTRLIMMSSATGQTGDSRRLHETGFDSILNKPVLPSELYASLEKI 794

Query: 118 PQMQKSKD 125
                + D
Sbjct: 795 LARTGAAD 802



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ + + + ++V   +    G       +  EA    E  +  + +++D  M  +   
Sbjct: 826 RILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALE-NIPYDLVLMDVQMPEMGGL 884

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDF----EKMIAGARAGANS 99
            A  R   +     V  L               G   GA  
Sbjct: 885 EATRRIRSMEHGTPVKPLSTTGSPLGCFTGQAGGMEHGAED 925



 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 19/56 (33%)

Query: 74   DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129
             + +  +      E       AG + +  KP N + L   + +    ++++     
Sbjct: 966  RIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWLSKERNQRTEDR 1021


>gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
 gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           furnissii CIP 102972]
          Length = 1113

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  +   +E  P  L++D  M G+    
Sbjct: 708 LLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEK-PELLLLDIMMPGMSGYQ 766

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + V  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 767 VCEELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 824

Query: 122 KSKDENQFLD 131
            SK E + L+
Sbjct: 825 ASKAEQRRLE 834


>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    + +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IDLVVLDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+     + + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  HIV ++ +      GF V   +   +     ++E  P+ +++D  + G  
Sbjct: 4   MGKVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDREN-PDVVILDIMLPGKD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +     + +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  GLTLC-RSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRR 121

Query: 121 QKSKD 125
            ++ +
Sbjct: 122 TQAVE 126


>gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 245

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G+   +A    +  +    +L+P+ +++D  +  V 
Sbjct: 1   MPRILVIDDDPAIVELVSINLEMAGYDTTQANDGIKG-QALAVQLVPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L    + +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 235

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 6   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 234

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      G+ V+EA +  EA    EK +  + +V+D  +  +  
Sbjct: 6   KKILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEK-VPLSLIVLDLMLPDLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  + + E ++ G   GA+ ++ KPF+ + L   +  + +
Sbjct: 65  EEICKIIRKKSR---VPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS278]
 gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       EA     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRL-KERIPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKD 125
              + 
Sbjct: 123 ASPER 127


>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       + V  A    EA +        N +++D  M  
Sbjct: 1   MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLF-THNTYNLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCRRLRNN---TNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia sp. TJI49]
          Length = 233

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A     A     +E +P+ +V+D  M G+  F
Sbjct: 8   RILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLA-QEFVPHVIVLDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    G++V V  L  + + +  + G   GA+ +L+KPF+ + L   +R   + Q
Sbjct: 67  ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQ 125


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ R      G+ V  A    EA       L P+ +++D  + G+   
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNA-LKPDIILLDIMLPGIDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  +  +V+    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  QVCREIRKK---SNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120

Query: 121 QKSKDENQFLDAI 133
                    +  +
Sbjct: 121 VGQSSAESEIKEV 133


>gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+ D    + ++ R      G+ V  A +  EA E  E+E  P+ +++D  M  
Sbjct: 1   MRKDLVLVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERE-RPDIVILDLMMPV 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F A  R   + ++  V  L         I G   GA+ ++ KPF+ + L   +  + 
Sbjct: 60  MDGFEAMQRIRQM-SNAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAVL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRAK 122


>gi|237708643|ref|ZP_04539124.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229457343|gb|EEO63064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1344

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211

Query: 122  K 122
            K
Sbjct: 1212 K 1212


>gi|212691763|ref|ZP_03299891.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855]
 gi|212665664|gb|EEB26236.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855]
          Length = 1344

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQA-RIPNIIVSDIMMPVMDGIE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211

Query: 122  K 122
            K
Sbjct: 1212 K 1212


>gi|171323011|ref|ZP_02911673.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171091604|gb|EDT37194.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A       E+ EK    N +++D  +  +  
Sbjct: 4   QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEK-YNYNTVILDIMLPEMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  +V+ +  I G + GA+ +++KPF+   L   +R L +
Sbjct: 63  WEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIR 122

Query: 120 M-QKSKDENQFLD 131
             Q  KD+++ L+
Sbjct: 123 RDQDFKDKDKILE 135


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    GF V  A +   A E  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGA-DLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    ++V V  L  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRTLRQK---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKD 125
           + + + D
Sbjct: 117 RRRTADD 123


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  +  +  +  G+ V  A    EA      E  P+ +++D  +     +E
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEAL-IMANERAPDLVILDWMLPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +V +  L    +    I G   GA+ +++KPF+   L   +R + +  
Sbjct: 64  VCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 227

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   L    GF V    +   A      +  P+ +++D  + G+  
Sbjct: 3   TRILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRAD-RPDLVLLDVMLPGLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +DV +  +    D   +IAG  AGA+ ++ KPF    L   ++   +
Sbjct: 62  VSVCRLIREE---SDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLR 118

Query: 120 MQKSKDE 126
            Q+ + E
Sbjct: 119 RQEPEHE 125


>gi|302878209|ref|YP_003846773.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302580998|gb|ADL55009.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 635

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +LLVD    +R + + L    G  V  A +  EA E  +    P  ++ D  M  +    
Sbjct: 326 ILLVDDDRAIRLLYKALLEKSGHSVTTANNGREALESVKASP-PQLIISDWMMPEMDGIE 384

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---ELP 118
           F   +R+ P    ++V+ +  +   EK+I    AGAN +L KP N + L   +R    + 
Sbjct: 385 FCRELRKNPDWHRIYVFIVTAQESTEKLIEAFEAGANDYLSKPINPKVLAARLRSAQRIV 444

Query: 119 QMQKSKDENQF 129
           QMQ++++E++ 
Sbjct: 445 QMQEAQEEDRL 455


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F      +  +A    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDT-YQPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   +     +  L  + +    + G   GA+ +++KPF+ + +   +R + +
Sbjct: 64  YQVCREIRAKSV---TPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLR 120

Query: 120 MQKSKDENQ 128
             +   + +
Sbjct: 121 RYQVGRQAE 129


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 1368

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+ D +  +R+    L +  G+ V        A E    +  P+ ++ D  M G   L  
Sbjct: 621 LVADDNADMREYLTRLLDGAGYQVDTVDDGLAALEAVRAD-APDLVISDVMMPGLDGLGL 679

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +A +R  P    V V  L      E  I G +AGA+ +L+KPF    L   +R   ++ +
Sbjct: 680 VAALRTDPRTVSVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVELAR 739

Query: 123 SKDENQF 129
            ++    
Sbjct: 740 LRNHQAR 746


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    G+ V  A +  +A    ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGA-DIVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    + V V  +  + D    + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQIRQ---TSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
          Length = 233

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+        G+ V  A+   EA     +E  PN +++D  +  +   
Sbjct: 9   KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQE-QPNLVILDIMLPKLDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R+    ++V +  L    D    + G   GA+ +++KPF  + L   +R L + 
Sbjct: 68  TVCSELRKK---SNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRR 124

Query: 121 QK 122
            +
Sbjct: 125 SE 126


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       EA +   KE +P+ L++D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLEAAGYEVETVARGDEA-DTGLKERIPDLLILDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P   ++ +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    + +   + F   GF     T+  EA     ++  P+ +V+D  + G    
Sbjct: 4   RILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGISGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R       + +  L    +      G  AGA+ ++ KPF+   L   ++ L + 
Sbjct: 64  DVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMRR 123

Query: 121 QK 122
            +
Sbjct: 124 AQ 125


>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 253

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R++     +  G+ V  A    +A E  ++E  P+ +V+D  M      
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRES-PDLVVLDVMMPRLNGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ +  L    D    I G   GA+ +L KPF+ + L   +  + + 
Sbjct: 74  GVCQKIREI---SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130


>gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi 1DA3]
 gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi 1DA3]
          Length = 1128

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASKA 844

Query: 124 KD---ENQFLDA 132
           +    EN+ L++
Sbjct: 845 EMRHIENKLLES 856


>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RKV R      G+ V EA +  EA   C      + +++D  M  + 
Sbjct: 1   MAHILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDY-DLIIMDVMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            + A  +++    ++ V  L    +    + G   G + +++KPF+ + L   ++ + + 
Sbjct: 60  GYSAC-KEIHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKR 118

Query: 121 QKSKDENQFLD 131
              ++ +  LD
Sbjct: 119 SARQESDAQLD 129


>gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
 gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
          Length = 223

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + +    +     + V    +   A ++ E E + + +++D  M  +   
Sbjct: 2   RILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLE-EDIYDAVIMDIMMPVMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G+++ V  L  + + +  + G   GAN +L KPF+   L   +R L + +K
Sbjct: 61  TALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIRVLTRSEK 120

Query: 123 SKD 125
            +D
Sbjct: 121 QQD 123


>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 242

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNEHKQIQ 143


>gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 240

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++ +      GF V  A    E  +       P  +++D  M G   F 
Sbjct: 7   ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALST-PELIILDIMMPGDDGFS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    + V +  L    D    + G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 66  LCQQIRRK---SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRA 122

Query: 122 KSKDENQ 128
           + +   +
Sbjct: 123 EFRQPEK 129


>gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio
           furnissii NCTC 11218]
          Length = 1113

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  +   +E  P  L++D  M G+    
Sbjct: 708 LLVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEK-PELLLLDIMMPGMSGYQ 766

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + V  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 767 VCEELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 824

Query: 122 KSKDENQFLD 131
            SK E + L+
Sbjct: 825 ASKAEQRRLE 834


>gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  + L +    +  + +    + G+ +       +A E        + +++D  M G  
Sbjct: 1   MFKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINH-FDLVILDIMMPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      ++ +  L      +  + G +AGA+ +L KPF+ + L   +  L 
Sbjct: 60  GIELCRQLR--SSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 240

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ +       F + EA    EA +          +++D  +  + 
Sbjct: 1   MTKILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMAL-NTDYACILLDLMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L + 
Sbjct: 60  GIEVANRLRE-YKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 118


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + K+  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K + E
Sbjct: 122 KGEQE 126


>gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
 gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
          Length = 227

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  ++ G+ V  A++  E  +  +K   P+ +++D  M
Sbjct: 1   MKKKEIKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNN-PHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R++P   +  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKV 119

Query: 115 RELPQMQKSKDE 126
           + L +  K ++E
Sbjct: 120 KALLRRLKEEEE 131


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    + ++ +      GF V  + +  E+ E   K    + +V+D  + G   
Sbjct: 4   KNILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELV-KNNDVDLIVLDLMLPGIDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+M       +  L    +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IEVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLR 122

Query: 120 MQKSKDENQFLD 131
             + K   + + 
Sbjct: 123 RSEEKQTVRAIK 134


>gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL
           J1-208]
          Length = 225

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEA-EKIVELEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ +V+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLI-ASDRPDAVVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L + 
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120


>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  144 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 253

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R++     +  G+ V  A    +A E  ++E  P+ +V+D  M      
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRES-PDLVVLDVMMPRLNGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   +D+ +  L    D    I G   GA+ +L KPF+ + L   +  + + 
Sbjct: 74  GVCQKIRAI---SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130


>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFK-FVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++  +     G+ +  A    +A     +   P  +++D  + G+  F
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALS-VYRLFKPALVILDVMIPGIDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L         + G  AGA+ +L KPF  + L   M+ L + 
Sbjct: 64  ELCRLIRAESS---VPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRR 120

Query: 121 QKSKD 125
            + ++
Sbjct: 121 SQMQN 125


>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +    G+ V       +A     +E  P+ +++D  + G+  F
Sbjct: 4   RILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAF-QEHHPDLVLLDVMLPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R     ++V +  L    D   ++ G  AGA+ ++ KPF    L   +R   + 
Sbjct: 63  EVCAALRAE---SNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRG 119

Query: 121 QKSKDENQ 128
           ++   E +
Sbjct: 120 REDAGEER 127


>gi|301155678|emb|CBW15146.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Haemophilus parainfluenzae T3T1]
          Length = 234

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  +   +    GF V  A +  EA +          +++D  M  + 
Sbjct: 1   MSKILLVDDDIELTDLLAEVLRLTGFEVEIANNGQEALDKLNSSHQ--LVLLDVMMPVLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   ++V V  L    +    + G   GA+ +L KPFN   L   ++ + + 
Sbjct: 59  G-IETLKKIRQTSNVPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILRR 117

Query: 121 QKSKDENQFLDAI 133
               + +Q   A+
Sbjct: 118 VSPSESSQNSTAL 130


>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 250

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E      + + +V+D  + G+ 
Sbjct: 26  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGV-DLVVLDLGLPGMD 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 85  GLEVARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 144


>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++VD    +R++      + GF + EA    EA +  E  +    +++D  M  + 
Sbjct: 1   MTTIMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLES-VAAQLVILDIMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  L  + +  + I G   G + +L+KPF+ + L   ++ L 
Sbjct: 60  GWELCRKLREHYDF---PLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALL 116

Query: 119 QMQKSKDENQ 128
           +  +    +Q
Sbjct: 117 KRYRIAASHQ 126


>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
 gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +RK+ +      G+ V EA    EA ++  ++     +++D  M  +  
Sbjct: 10  TKILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPKMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L    +    + G   G + ++ KPF+ + L   +  + +
Sbjct: 70  WQVCREIRMHSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILR 126

Query: 120 MQK 122
             +
Sbjct: 127 RTQ 129


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    VR V R      G+ V  A     A      E  P+ +V+D  + G   L
Sbjct: 10  RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETAL-RLHAERKPDLVVLDLMLPGVGGL 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V V  L    +    + G   GA+ +++KPF+   L   +  + + 
Sbjct: 69  EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125

Query: 121 QKSKDENQ 128
            ++    +
Sbjct: 126 ARTSQPAE 133


>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 235

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 6   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +  + ++     GF V  A    E       E  P+ +V+D  +  +  
Sbjct: 3   KKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKAL-EGKPDLIVLDLMLPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +         +  L  + D    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 62  IEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121

Query: 122 K-SKDENQF 129
           +    EN+ 
Sbjct: 122 QIIAQENEQ 130


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA +    E   + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMA-TENAYDMVLLDIMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R+    +++ +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQHIRE---FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKD 125
              +  
Sbjct: 119 RTAASQ 124


>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 239

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +  + R      GF V  A S  EA         P+ LV+D  +      
Sbjct: 7   RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTA-RRPDLLVLDIMLPDGDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +V V +L         IAG   G + ++ KPF+ + L   +R + +  +
Sbjct: 66  ELCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTR 125

Query: 123 SKD 125
            + 
Sbjct: 126 REQ 128


>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 237

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+     R+   +     G+ V    +  EA    + E  P+ +++D  + G  
Sbjct: 1   MTRILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDE-QPDLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      DV V  L  +      + G   GA+ ++ KP++   L   MR + 
Sbjct: 60  GTEVCRELRSRG---DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVL 116

Query: 119 QMQKSKDENQ 128
           +   S   ++
Sbjct: 117 RRHTSASASE 126


>gi|307728990|ref|YP_003906214.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307583525|gb|ADN56923.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 241

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|187923123|ref|YP_001894765.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187714317|gb|ACD15541.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 241

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +  V +      GF V  A +   A     KE   + +++D  + G+   
Sbjct: 2   RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLF-KENSYDLVLLDLMLPGLSGE 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++       V  L  +V+ E  + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 61  EICREIRKISA---TPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRR 117

Query: 121 QKSK 124
              +
Sbjct: 118 THIE 121


>gi|300867146|ref|ZP_07111811.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
 gi|300334847|emb|CBN56977.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
          Length = 461

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V     ++ G+ V  ATS   A +  E+   P+ +++D  M G+  F 
Sbjct: 45  ILIVDDTPTNLDVISEALSNAGYKVAFATSGERALQQVERRP-PDLILLDVMMPGIDGFE 103

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V ++    D +  + G + GA  ++ KPF  + +   ++   Q++
Sbjct: 104 TCKRLKANEKTCDIPVMFMTALADVDNKVKGLKLGAVDYVTKPFQEQEVLARVKTHLQLR 163

Query: 122 KSKDENQF 129
                 + 
Sbjct: 164 LLTQNLEQ 171


>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++RK+        G++  EA    +A +    E   + +++D  +     
Sbjct: 4   KKILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPEYDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +   +  L    +    + G   GA+ ++ KPF+   L   +  + +
Sbjct: 64  WTVCREIRKK---SSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     K    N +++D  M  
Sbjct: 30  MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNY-NLVILDLMMPK 88

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 89  VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 145

Query: 117 LPQM 120
           L + 
Sbjct: 146 LMRR 149


>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      GF V  A+   EA +  E E  P+  ++D  M G+  
Sbjct: 6   TKVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAE-ESRPDAFILDVMMPGMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +    G D  V +L  +   E  I G   GA+ +++KPF+ E +   +R + +  
Sbjct: 65  FELLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRG 124

Query: 122 KSKDENQ 128
           K+++  +
Sbjct: 125 KAEETEE 131


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    +  + +      GF V  A    EA E  +K  +P  +++D  +     +E
Sbjct: 6   ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKH-VPALILLDIMLPYRDGME 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +  
Sbjct: 65  VCREVRKE---HDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRN 121

Query: 122 KSKDEN 127
           +   E+
Sbjct: 122 QRSAED 127


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + ++         +    A +  +A +  E++ + + +++D  MEG+  
Sbjct: 4   KTVLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAV-DLVILDVMMEGMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ      + V  L    +    + G + GA+ +++KPF+ + L   +    +
Sbjct: 63  FHVCERIRQK---HSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALR 119

Query: 120 MQKSKD-ENQFL 130
                    + L
Sbjct: 120 RANMDKIRGRRL 131


>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 234

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++        G  V  A+   E     ++E  P+ +++D  +  + 
Sbjct: 1   MSHILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQE-QPDLVILDWMLPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  +   V V  L  + D  + + G   GA+ ++ KPF+   L+  +R L 
Sbjct: 60  GVEVCRKIRETSI---VPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|295675889|ref|YP_003604413.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295435732|gb|ADG14902.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 241

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        GF V    +  +A     +E  P+ +++D  +  +  F
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEE-PDLIILDVMLPDMNGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    + +L  + D E  I G   G + ++ KPF+ + +   ++ + +   
Sbjct: 65  GVTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124

Query: 123 SKDENQFLDA 132
             DE+  + A
Sbjct: 125 HADEDAIIRA 134


>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 247

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA E   +      +++D  +  +    
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +         +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 70  VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128


>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       EA     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRL-KERVPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFLD 131
              +     L 
Sbjct: 123 ASPERLATVLS 133


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R+V     +  G+   EA +  +A +   +E+  + +++D  +  + 
Sbjct: 1   MKNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALD-IHREVAVDLIILDLMLPDLS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +V+    + G   GA+ +++KPF+   +   ++ + 
Sbjct: 60  GEEVCREIRRQSA---VPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|91782444|ref|YP_557650.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|296159047|ref|ZP_06841874.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|91686398|gb|ABE29598.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|295890608|gb|EFG70399.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 241

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV  
Sbjct: 3   TQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGS-LERRLERERPDLIVLDLMMPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +    G D+ V  L    D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 62  LTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR 121

Query: 122 K 122
           +
Sbjct: 122 R 122


>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
 gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
          Length = 229

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++     R+V  +     GF V  A +  E      +E +P+ +V+D  M     +
Sbjct: 7   TVLIIEDELAQREVLAYNLEADGFRVIRAENGEEGL-LLVEEDMPDIIVLDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPSTVGMRLE 136


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R++        GF V  A     A    E E  P+ +V+D  +  V  F
Sbjct: 12  RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAE-EYHPDLVVLDVMLPDVDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V +L    +    + G   G + ++ KPF+ E +   +R + +   
Sbjct: 71  EVTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 130

Query: 123 S 123
           S
Sbjct: 131 S 131


>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
 gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  + ++     G+ V       EA +   +E LP+ L++D  + G  
Sbjct: 1   MPKVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEA-DLRLRESLPDLLLLDWMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + V  L    +  + I G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GIELCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 232

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EA+   EA          +  ++D  + G+ 
Sbjct: 1   MSKVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R       + + +L  +V  +  +     GA+  + KPF+   L   ++ L + 
Sbjct: 61  GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRR 120

Query: 121 QKSKDE 126
                E
Sbjct: 121 VNVHRE 126


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A +  EA     +EL P+ +++D  +  +   
Sbjct: 21  RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEAL-RITRELRPDAVLLDIMLPDMDGL 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 80  TLLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139

Query: 123 SKD 125
           +  
Sbjct: 140 AAA 142


>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  R      G  V  A    EA E   +E   + +++D  +    
Sbjct: 1   MAKVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMA-REKEYDIVLLDVMLPKRD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +++ +  L  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GFEVCQAIRE---FSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116

Query: 119 QM--QKSKDENQ 128
           +   ++S+ + Q
Sbjct: 117 RRSTRRSRKDAQ 128


>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++        G+    A           +   P+ +++D  + G++
Sbjct: 1   MPTVLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARR-CKPDLILLDLMLPGMM 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++   L   + V  L    +    + G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GTEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVL 119

Query: 119 QMQKSKDE 126
           + +    E
Sbjct: 120 RRKLPAAE 127


>gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 251

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R++        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 1   MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 60  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKAL 119

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 120 LRRTNRAQLN 129


>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 240

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60
             +LL++    + ++         + V  A    E  +  + KE   + +V+D  +  + 
Sbjct: 3   KQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMD 62

Query: 61  E--FIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R  +  +   V +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 63  GMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122

Query: 117 LPQMQKSKDE 126
           + +  +  ++
Sbjct: 123 VIRRHEQPNQ 132


>gi|329956519|ref|ZP_08297116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524416|gb|EGF51486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1449

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +S+L+V+ ++ +R   +   +   + V  A++  E  +      +P+ ++ D  M  +  
Sbjct: 1188 NSILVVEDNNELRHFLKSSLSGS-YNVITASNGKEGLQRAIDN-VPDLIISDVMMPIMDG 1245

Query: 62   FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++       + +  L  +   +  IAG   G + ++ KPF+   L+  +  L +
Sbjct: 1246 LEMIGQIKANNNICHIPIIVLSAKASLDDRIAGLEHGIDDYITKPFSSTYLKIRITSLLR 1305

Query: 120  MQKSKDEN 127
             +K   E 
Sbjct: 1306 QRKELQEM 1313


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 25  KRILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGW-DALILDLMLPGVDG 83

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 84  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 143

Query: 122 KSKDENQFLDA 132
            +  ++  ++A
Sbjct: 144 DALAKDSRIEA 154


>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
 gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
          Length = 235

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 6   NILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 65  AFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|229525275|ref|ZP_04414680.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae bv. albensis VL426]
 gi|229338856|gb|EEO03873.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
           cholerae bv. albensis VL426]
          Length = 619

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 214 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAMKREK-PELVLLDIMMPGMSGYQ 272

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 273 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 330

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 331 ASKAELRRIE 340


>gi|224537165|ref|ZP_03677704.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521220|gb|EEF90325.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1288

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+VD +  +R   +  F +  + + EA +  EA E  +KE  P  ++ D  M  +  F 
Sbjct: 1043 ILIVDDNKDLRNFLKCSFENQ-YNILEAGNGNEAWELLQKES-PELIISDVMMPDMDGFE 1100

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L    D    + G   GA  ++ KPF+   L   ++ L + +
Sbjct: 1101 LCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMRNR 1160

Query: 122  KSKDE 126
            +   E
Sbjct: 1161 EIVRE 1165


>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
 gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+V+    +R   +       F V EA +  E  E   +E  P  +++D  + G+ 
Sbjct: 1   MDKILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKA-REHKPEVVILDIMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    T++ +  L  +      + G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GLEVCKILRQ--EFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAIL 117

Query: 119 QMQKSKDEN 127
           +   +  EN
Sbjct: 118 RRVNAVKEN 126


>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    +R V R      GF V  A S  E  E    E  P+ +++D ++ G+   
Sbjct: 4   TILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHEC-PDLVILDLNLPGMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +DVF+  L    +    +AG R GA+ +++KPF+   L   +  + + ++
Sbjct: 63  EVAARLRQD-SDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRR 121

Query: 123 S 123
           S
Sbjct: 122 S 122


>gi|298489751|ref|YP_003719928.1| response regulator receiver modulated serine phosphatase ['Nostoc
           azollae' 0708]
 gi|298231669|gb|ADI62805.1| response regulator receiver modulated serine phosphatase ['Nostoc
           azollae' 0708]
          Length = 378

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D  + ++   + +    G+ V  A++  E          P  ++ D  M G  
Sbjct: 1   MFQILVIDDDYSIQIFLKRMLEKQGYEVITASNGQEGILQALA-CPPALIICDWIMPGLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E   H+++ P  +  F   L         + G  AGA+ F+ KP  +  L+  +R   
Sbjct: 60  GIEVCDHIKKDPNLSTTFFILLTSLDSVADRVKGLDAGADDFISKPIEQNELQARVRAGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + Q
Sbjct: 120 RLHQLNRDLQ 129


>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 239

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++ R       +++ EA+   EA E   +    + +++D  M     +
Sbjct: 6   RILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSY-DCILLDIMMPEKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 65  EVCQAIREK---KATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121

Query: 121 QKSKD 125
             ++ 
Sbjct: 122 TSTQS 126


>gi|153872512|ref|ZP_02001384.1| adenylate cyclase [Beggiatoa sp. PS]
 gi|152071021|gb|EDN68615.1| adenylate cyclase [Beggiatoa sp. PS]
          Length = 681

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+LLV+ S +  ++   L     F VF A +   A E  +K+  P+ +++D ++ G+  F
Sbjct: 552 SILLVEDSALNARLLSFLLTKNAFNVFVAKNGNSALEMVKKQH-PHLILLDINLPGINGF 610

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++    D    + G   GA  ++ KPF +E +   +R   ++
Sbjct: 611 EICKRLKSNTHTQDIPVIFMSAYTDTLDKVKGFELGAVDYITKPFQQEEVLARIRTHLKL 670

Query: 121 QKSKDENQF 129
              + + +F
Sbjct: 671 SHLQKQLKF 679



 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEG--VLE 61
           ++VD   + R+V  +  +   +   +AT   EA     E E+ P+ +++D  M      +
Sbjct: 1   MIVDDEPVNRQVLVNHLSLQNYKTIQATDGQEALNLVLEGEIKPDLILLDIMMPYKTGYD 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L  +     ++ G   GAN +L KP +++ L   ++    + 
Sbjct: 61  VTQKIRKKWPADELPIILLTAKNQVSDLVVGLEMGANDYLTKPVSKDELLARIKTHLHIL 120

Query: 122 KSKDENQFLD 131
           + K E+  L 
Sbjct: 121 QLKAESLQLA 130


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +  V +      GF V  A +   A    ++    + +++D  + G+   
Sbjct: 2   RILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPY-DLVLLDLMLPGLSGE 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     V +  L  +++ E  I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 61  EICKEIRKISA---VPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRR 117

Query: 121 QKSK 124
              +
Sbjct: 118 TDIE 121


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRSR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    +  +     +  G+   +  S   A ++ E   + + +++D  M  + 
Sbjct: 1   MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKV-DLVLLDIMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+    ++V +  +        ++ G + GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWETCKRIRE---FSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 244

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  V +      G+ V  A    EA E    E  P+ +++D+ +   +
Sbjct: 8   MSKILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASEN-PDLVLLDQMLPE-I 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+   +   V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 66  EGTEVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRR 125

Query: 121 QKS 123
           Q +
Sbjct: 126 QDA 128


>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    V  V        G+ V  A               P+ +V+D  + G  
Sbjct: 1   MARVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHA-ALATAAATRPDLVVLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+      V V  L         I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GLEVCRRLRE---TGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++     R+V  +     G+ V  A    +      +E  P+ +V+D  +     +E
Sbjct: 6   VLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGL-LMVEEDAPDVIVLDWMLPHVSGIE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + +  L    +    + G   GA+ +++KP+    L   +R   +  
Sbjct: 65  VCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124

Query: 122 KSKDENQFL 130
           +     Q L
Sbjct: 125 RPSKVGQVL 133


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  +  +  +  G+ V  A    EA      E  P+ +++D  +     +E
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEAL-IMANERGPDLVILDWMLPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +V +  L    +    I G   GA+ +++KPF+   L   +R + +  
Sbjct: 64  VCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
 gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
          Length = 236

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  M G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMMPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++    +++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKSIDA 136


>gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
 gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
          Length = 226

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ +   ++R+    +F D G+ + EA +  EA +    E  P+++ +D  M    
Sbjct: 1   MK-VLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEK-PDFICLDIMMPEIN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R++   +D+ V +L  +   E  + G   GA+ ++ KPF  + +   +R + 
Sbjct: 59  GYDVCREIRKVD--SDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVT 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    + ++ ++     G+ V  A +  +A +  + ++ P+ +++D  + G+  F 
Sbjct: 6   ILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVD-DIAPDLIILDIMLPGLDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++M     + + +L  + + E  + G   GA  +L KPF+   L   ++ + +  
Sbjct: 65  VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRI 124

Query: 122 KS 123
             
Sbjct: 125 NQ 126


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R++     +  G+ V  A S  EA E   +   P+ +++D  +  +  F
Sbjct: 13  TIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 72  TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 131

Query: 123 SKDEN 127
            + E+
Sbjct: 132 EQVED 136


>gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 246

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R +        G+ + +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L      +  + G  AGA+ +L KPF    +   +R L 
Sbjct: 60  GFTVCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|46014953|pdb|1NXO|A Chain A, Micarec Ph7.0
 gi|46014954|pdb|1NXP|A Chain A, Micarec Ph4.5
 gi|46014955|pdb|1NXS|A Chain A, Micarec Ph4.9
 gi|46014957|pdb|1NXV|A Chain A, Micarec Ph 4.2
 gi|46014958|pdb|1NXW|A Chain A, Micarec Ph 5.1
 gi|46014959|pdb|1NXX|A Chain A, Micarec Ph 5.5
 gi|116666718|pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
           Essential Response Regulator From S.Pneumoniae In
           Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
           Possible Phosphate In The Active Site
 gi|116666719|pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
 gi|116666720|pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-Rec On Bef3 Bound
          Length = 120

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++D  +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILDLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SQ 120


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A    EA +  E E  P+ +++D+ +   L
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESED-PDLVLLDQMLPE-L 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+   +   V  +  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 59  EGTEVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRR 118

Query: 121 Q 121
           Q
Sbjct: 119 Q 119


>gi|309791481|ref|ZP_07685985.1| signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226478|gb|EFO80202.1| signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 495

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     +     L    G+ +  A+S  EA     + + P+ +++D  M  +  F 
Sbjct: 7   ILVVDDQPRSQMALSSLLEPEGYRLAFASSGPEALAQM-RLIAPDLILLDVMMPDMDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + V  +    D E ++ G R+GA+ F+ KPFNR  LR  +R + ++ 
Sbjct: 66  VCERIRADPAFATIPVVMVTALDDQESLLRGIRSGADDFVTKPFNRTELRARIRTITRLN 125

Query: 122 K---SKDENQFLDA 132
           +     DE + +++
Sbjct: 126 RFRTLLDEQRIVNS 139


>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +       + V  A    EA +   KE   + +++D  + 
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KETSFHLIILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 60  KLSGEEVCSKIRES---SNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ LL++D   +  K  +    + GF V  A    E  +        + +++D  +  + 
Sbjct: 1   MEKLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNY-DLVILDIMLPKLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +++ +  L    D    I G   GA+ +L KPFN   L   +R L 
Sbjct: 60  GFSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALL 116

Query: 119 QMQ-----KSKDENQF 129
           +       K KDE + 
Sbjct: 117 RRATNPYTKRKDEIRR 132


>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
 gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. BL107]
          Length = 245

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +++LP+ ++ D  M      
Sbjct: 20  RLLLVDDEPGLRTAVQAYLEDEGFDVATAVDGEEGFTKA-QQMLPDVVISDVMMPRLDGY 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q 
Sbjct: 79  GLLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQR 138

Query: 121 Q-KSKDENQFLD 131
           Q +   E     
Sbjct: 139 QHRLLQEAARFA 150


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            L+LV+    + ++    F + G+ V       EA      E +P+ +++D  +EG   +
Sbjct: 5   KLILVEDDPALAELLEFRFANEGYQVRVTADGDEAL-LMASEDVPDLIILDWMIEGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L      +  + G   GA+ +L KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRR 123

Query: 121 QKSKDENQFLD 131
            +     + ++
Sbjct: 124 IRPALAGETIE 134


>gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
 gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G+ V EA S   A E   K    +  ++D  + G+ 
Sbjct: 1   MKRVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMD 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +  +  +      I G   GA+ ++ KPF+   L   +  L 
Sbjct: 61  GLSLCETIRRDDN--DIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALT 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRIK 122


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + +V +      G++V  A       +   +E  P+ +++D  + G+
Sbjct: 1   MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLA-REHRPDLIILDWMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R      +  +  L  +   +  + G  AGA+ ++ KPF  E L   +R L +
Sbjct: 60  DGLEVCQRLR-TLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLR 118

Query: 120 MQKSKD 125
             + + 
Sbjct: 119 RTQMER 124


>gi|268317907|ref|YP_003291626.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
 gi|262335441|gb|ACY49238.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
          Length = 523

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  + +      G+ V    +  EA E+  +    + +++D  + G+  
Sbjct: 396 RRILLVEDDPDIAALIQIRLQRDGYEVVHLANGREAAEWARQHTA-DLVILDVKLPGMDG 454

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  +A +R  P   +V +  L      + ++ G   GA+ +++KPF+   L   +R L  
Sbjct: 455 FELLAFLRAQPAFAEVPIVMLTSLSQEQHVVRGFELGADDYVVKPFSPVELSARVRRLLH 514

Query: 120 MQ 121
            Q
Sbjct: 515 RQ 516



 Score = 94.5 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LLLV+    +  +   +       +    +  EA+++ +++   + ++ +  +  +   
Sbjct: 103 RLLLVEPDDGLADLLTAMLQTPYRQIHRVATAAEAQQWLQQQRSAHLIITELFLPDLDGR 162

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +RQ P    + +  L   +           GA+  L KPF+   L   +  L Q 
Sbjct: 163 SLILWIRQQPQTQQMPILVLSAHLSSAVKAECYALGADDVLEKPFDPAELSLIVASLLQR 222


>gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36]
 gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36]
          Length = 237

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    ++++     +  GF V  A    E  +       P+ +V+D  M G   
Sbjct: 5   KQILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKE-MQRVLATNTPDLIVLDVMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     + V +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQKIR---RTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLR 120

Query: 120 MQKSKDENQ 128
                   Q
Sbjct: 121 RSSYTKPTQ 129


>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    A     A+   +  +LP+ +++D  + 
Sbjct: 1   MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L      R       V +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK--ELLPNYLVIDESMEG 58
           M  +LLVD    +           G+ V  A +   A E  +K   L  N LV+D  +  
Sbjct: 1   MARILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPE 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       R   +     + +L  +   +  + G  AGA+ +L+KPF    L   +R L 
Sbjct: 61  LSGLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALL 120

Query: 119 QM 120
           + 
Sbjct: 121 RR 122


>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
           [Variovorax paradoxus EPS]
 gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus EPS]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    + ++        GF    +     A+   +   LP+ +++D  + G
Sbjct: 1   MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDA-FLPDLILLDWMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              L+     R+ P    + +  L    D    +AG  AGA+ ++ KPF+ + +   +R 
Sbjct: 60  QSGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRA 119

Query: 117 LPQMQKSKDENQFLD 131
           + + +  +   + ++
Sbjct: 120 VLRRRAPEVVTERVE 134


>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 358

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +  +     +  G+ VF A S  EA +  +  + P+ +V+D  + G   L
Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDI-VQPDLIVLDLMLPGLSGL 191

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     + V +  L  +   + ++ G   GA+ ++ KPF+ + L   +  + + 
Sbjct: 192 EVCKKIR---DSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRR 248

Query: 121 QKSK 124
            + +
Sbjct: 249 VQPE 252


>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R + +    + GF   EA    +A +     +  + ++ID  M  +  
Sbjct: 6   KTVLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVL-ANVKVDAVLIDIMMPKMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     +DV + +L    +    + G + G + +++KPF+   L   +  + +
Sbjct: 65  FSLCERIRWQ---SDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 233

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R+  +    D  F V  A++  E  E  ++E +PN L+ D  M      
Sbjct: 7   KILLVDDEPGLRESVQAYLEDSDFEVRVASNAQEGWELLQQE-IPNVLISDIMMPQVDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  VR+      + V +L         I G +AGA+++L KPF+ E L   +  L + 
Sbjct: 66  QFLKQVREDARFQALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVTSLIER 125

Query: 121 QKSKDEN 127
           + ++  +
Sbjct: 126 RAAQAPD 132


>gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
 gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           AND4]
          Length = 1129

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  ++        G+ V       E     E+E  P  L++D  M G+      
Sbjct: 727 VADDEPVNLRILESFLRLEGYRVRTIADGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 785

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 786 SKLREHFDHAELPIIMLTGMSQTEDRVKGFEAGANDYLTKPFNKQELAARIQAHLTASKA 845

Query: 124 KD---ENQFLDA 132
           +    EN+ L++
Sbjct: 846 EMRHIENKLLES 857


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +         EA      E  P+ +++D  + G+  
Sbjct: 5   QRILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFP-EFRPHLVLLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREMRS---ASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
 gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    + ++        GF    +     A+   +   LP+ +++D  + G
Sbjct: 1   MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDA-FLPDLILLDWMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              L+     R+ P    + +  L    D    +AG  AGA+ ++ KPF+ + +   +R 
Sbjct: 60  QSGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRA 119

Query: 117 LPQMQKSKDENQFLD 131
           + + +  +   + ++
Sbjct: 120 VLRRRAPEVVTERVE 134


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score =  144 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +     E+       + +++D  +  + 
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      V V  +    +    + G   GA+ +++KPF+ + +   ++ + 
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117

Query: 119 QMQKSKDENQ 128
                  E +
Sbjct: 118 SRTYGASEEE 127


>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    +R + R   +  GF V EA++  E  +    +   + +V+D  M  +   
Sbjct: 5   RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTH-DVVVLDVMMPDMDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     V +  L    + +  + G   GA+ +++KP + E L   +  L + 
Sbjct: 64  QVCKKMREIAP---VPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRR 120

Query: 121 QKSKD 125
              + 
Sbjct: 121 SSHQA 125


>gi|294055133|ref|YP_003548791.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614466|gb|ADE54621.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 382

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I+RK+ R +    GF+V E+ S   A + C  E  P+ +++D  M+G+  F
Sbjct: 13  RILVVDDDEIIRKLLRRVLERSGFIVDESDSGEAAIQ-CIVENQPDLILLDVVMDGIDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ M     V + ++    D   ++ G  AG + ++ KP NR      +R   +M
Sbjct: 72  ITCRKIKSMEGMESVPIIFVTGRSDTGSIVEGLDAGGSDYITKPINRHESLARIRNHLKM 131

Query: 121 QKSKD-ENQFLDAI 133
           +K    +++F+  +
Sbjct: 132 RKLMQMQSEFISGL 145


>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
 gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD   ++ K  R      G  V  A    EA +   KE   + +++D  +     
Sbjct: 3   RRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLA-KENAYDMILLDIMLPKHDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    +DV +  L    D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQQIRE---FSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
               +D+ Q
Sbjct: 119 RTSKRDKAQ 127


>gi|104783385|ref|YP_609883.1| two-component response regulator GltR [Pseudomonas entomophila L48]
 gi|95112372|emb|CAK17099.1| two-component response regulator GltR [Pseudomonas entomophila L48]
          Length = 240

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++ +      GF V       +           + +++D  +     
Sbjct: 6   KSILMVDDDQDIRELLQTYLARSGFQVHAEADG-QGFRRALDSSPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P  + V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRLSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAE 127


>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 265

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R + R  F   GF V EA+   EA      E + +  ++D  M  +  
Sbjct: 45  KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 103

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++R++   ++  +  L  +   E  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 104 LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLR 160

Query: 120 MQKSKDENQFLD 131
              + ++   LD
Sbjct: 161 RTGTLNDKNILD 172


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +     E+       + +++D  +  + 
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      V V  +    +    + G   GA+ +++KPF+ + +   ++ + 
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117

Query: 119 QMQKSKDENQ 128
                  E +
Sbjct: 118 SRTYGASEEE 127


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF V  A     A      E  P+ +V+D  +  +  F
Sbjct: 29  RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTEN-PDLIVLDVMLPDMDGF 87

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    GT + V +L    D    I G   G + ++ KPF  E +   +R + + 
Sbjct: 88  TVTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 145


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +         EA +    E  PN +++D  + G+  
Sbjct: 5   QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFP-EFKPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCRELRAS---SQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RYQA 124


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + K+  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  IEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K K E
Sbjct: 122 KGKQE 126


>gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 228

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL+D    +R+V R      G+ V EA++  EA      E  P+ +V+D  M  +   
Sbjct: 4   TILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEK-PDLVVLDLMMPEMNG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +      ++  V  L   V+    I G   GA+ ++ KPFN   L   +R + + 
Sbjct: 62  TEFLLAFSKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVLRR 119


>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   ++ + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA +  E+ + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIER-VHPDLIVMDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
             DE+
Sbjct: 127 DPDED 131


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    VR V R      G+ V  A     A      E  P+ +V+D  + G   L
Sbjct: 13  RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETAL-RLHAERKPDLVVLDLMLPGVGGL 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V V  L    +    + G   GA+ +++KPF+   L   +  + + 
Sbjct: 72  EVCRRLRERGE---VPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 128

Query: 121 QKSKDENQ 128
            ++    +
Sbjct: 129 ARTSQPAE 136


>gi|187921731|ref|YP_001890763.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187720169|gb|ACD21392.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 1646

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+VD +  +R+    +    G  V  A+          +   P+ ++ D  M      
Sbjct: 659 RLLVVDDNADLREYMSRILRAAGHDVRLASDGQA-ALEAARAEAPDLVLSDVMMPRLDGF 717

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P   D  V  L      E  + G   GA+ +L KPF+   L   +    Q+
Sbjct: 718 GLLRALRADPHLRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARVSGNLQL 777

Query: 121 QKSKDENQF 129
            + + E + 
Sbjct: 778 ARLRRETEM 786



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 13/139 (9%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            ++L V+    VR     + +D G+ V +A     A    E  +  + L  D  M G L  
Sbjct: 1376 TILAVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDMLFTDVVMPGPLRS 1435

Query: 61   -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118
             E     +       + V +     D   + +G    G    L KP+  E L   +R + 
Sbjct: 1436 TELAR--KARERLPAIAVLFTSGYTDNAIVHSGRLDEGI-ELLSKPYTHEALARKVRYVL 1492

Query: 119  QMQK------SKDENQFLD 131
            Q Q       ++ E   L+
Sbjct: 1493 QAQNPQAAEIAEAEQHLLE 1511



 Score = 62.5 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLV+   ++R     L   F F + EA    +A +    E   + ++ D  + G    
Sbjct: 1531 RILLVEDDELIRVSTAELLRTFDFDILEAEGEHDA-KQILSEHAISVMLTDVGLAGKSGV 1589

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +       D+ V +L                 A   + KP++   L  A++   +
Sbjct: 1590 DLALDVCRERPDLRVIFLTGYDLVLTPAQRAVLPHAM-LMRKPYDPLDLIDALKTPLR 1646


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium kansasii ATCC 12478]
          Length = 240

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A++  +A +   +E  P+ +++D  M G+  F
Sbjct: 15  RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRA-REARPDAVILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + +   
Sbjct: 74  GVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 123 ---SKDENQFL 130
              ++  N  L
Sbjct: 134 KGSAEPRNSRL 144


>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|91789740|ref|YP_550692.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
           JS666]
 gi|91698965|gb|ABE45794.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
           JS666]
          Length = 1003

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R     L     + V       EA     ++  P+ ++ D  M     L
Sbjct: 643 RVLVADDNRDLRTFLSSLLAPH-YDVQVVADGREALAAI-QQRKPDLVLSDVMMPNLDGL 700

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P    + V  L      E  + G  AGA+ +L KPF  + L   +R    M
Sbjct: 701 GLVRALREDPETRTLPVILLSARAGQEASLEGLSAGADDYLAKPFTSQELLARVRTHLTM 760

Query: 121 QKSKDE--------NQFLDA 132
            +++DE        N+ L+A
Sbjct: 761 ARARDELNTELMHANEELEA 780


>gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + ++  +  +  G+ V  A++  E  +  +KE  P+ +++D  M  +   
Sbjct: 7   KILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEK-PHLIILDVMMPEMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++P   +  + +L    +    +AG  AGA+ ++ KP   + L   ++ L + 
Sbjct: 66  EACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125

Query: 121 QKSKDEN 127
            K+++ N
Sbjct: 126 LKAEEGN 132


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    ++ +  +     GF V  A    +A +   ++   + +++D  +    
Sbjct: 1   MTKVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQK-IDIVLLDIMLPEES 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +R       + +  L    D    + G   GA+ ++ KPF+   +   +  + 
Sbjct: 60  GVDVTRELRAEKN--QIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVL 117

Query: 119 QM--QKSKDENQF 129
           +   QK++ E + 
Sbjct: 118 RRFSQKTQTEKEQ 130


>gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA
           regulates genes involved in folding/degrading
           periplasmic proteins OmpR family protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila]
 gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 230

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + + L    GF V  A    +A ++ +     + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYIDSS--IDLLLLDIMMPRKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 59  GIETLKELRQ---YHQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

Query: 119 QMQKSKDEN 127
           +     ++ 
Sbjct: 116 RRSNWSEQQ 124


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    + +  R+     G+ V  A    +  +   ++  P+ +V+D  +  + 
Sbjct: 1   MATVLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRD-QPDLVVLDIMLPRLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ    +DV +  L    D    IAG   GA+ ++ KPF+       +R + 
Sbjct: 60  GFSVCRILRQE---SDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAIL 116

Query: 119 QMQKSK 124
           +  + +
Sbjct: 117 RRSERQ 122


>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 224

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D    +RK+        G+ + EA    +A +        + +++D  M G    
Sbjct: 5   KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    +    + G   GA+ ++ KPF+ + L   ++ L + 
Sbjct: 65  TVCREIRKS---SQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR 121

Query: 121 QKSKDENQFLDAI 133
            ++    +  D +
Sbjct: 122 VQNNRTVRSFDGL 134


>gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 224

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +  +    F   G++V+ A +  EA     K   P+ +++D +M  +  
Sbjct: 3   QSILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAITKN--PDIILLDINMPDMNG 60

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R         + +L   V+    I G   GA+ +++KPF+ + L   +    +
Sbjct: 61  FTVCEAIRN---YVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHLR 117

Query: 120 MQK 122
            +K
Sbjct: 118 REK 120


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    VR   R   +  G+ +  A    +A +  EKE  P+ +++D  M  + 
Sbjct: 1   MK-IVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKE-QPDLVILDVMMPKMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 H+R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRHLRSH--GDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116

Query: 119 QMQKSKD 125
           +   ++ 
Sbjct: 117 RRAAAEA 123


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     GF+V  A    EA +    E  P+ +++D  + G   +
Sbjct: 5   RILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEA-DLRLHETTPDLVLLDWMVPGLSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + V  L    +    + G   GA+ +++KPF+   L   +R L + 
Sbjct: 64  ELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123

Query: 121 QK 122
            K
Sbjct: 124 AK 125


>gi|159897134|ref|YP_001543381.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890173|gb|ABX03253.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 355

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S   R + +       + V  A +  +A ++ +     + +++D  M  +  F
Sbjct: 7   RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHT-IDLILLDIMMPVMNGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + +++Q      + V  +    D E ++ G + GA  +L KPFN   LR  +    + 
Sbjct: 66  EVLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNTTLLRARIEASLEK 125

Query: 121 QKSKDENQ-FLDAI 133
           ++  D+ Q +L AI
Sbjct: 126 KRLHDQEQAYLQAI 139


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  + R+     G+ V       EA E   +E  P+ L++D  + G  
Sbjct: 1   MPKVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEA-EIRLRESQPDLLLLDWMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + V  L    +  + I G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GIELCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAIL 119

Query: 119 QMQKSK 124
           +  + +
Sbjct: 120 RRARPE 125


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D    +    R   +  G+ V  A +  E  +       P+ +++D  M  +    
Sbjct: 6   ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSN-APDLVILDWLMPDMDGIE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R      ++ +  L  + +    + G  AGA+ +L+KPF  E L   ++ L + 
Sbjct: 65  VCKRLRSAD---NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRR 120


>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +  + +      G+ V  A    EA    E E+ P+ +++D  +     
Sbjct: 3   RTILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVE-EIQPDLILLDIMLPLKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMR 118

Query: 120 MQ 121
             
Sbjct: 119 RH 120


>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
          Length = 233

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFIA 64
           VD    +R++     +  G+ V  A    EA E   K   P+ +V+D  M          
Sbjct: 2   VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAD-PDLVVLDVMMPKLDGYGVCQ 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 61  ELRKE---SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  E+ + PN +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIER-VNPNLIVMDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
             DE 
Sbjct: 127 EPDEE 131


>gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator
           [Prosthecochloris aestuarii DSM 271]
 gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family
           [Prosthecochloris aestuarii DSM 271]
          Length = 236

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+  H + K+ ++     G+    A S  EA +  + +   + +++D  + G+  F 
Sbjct: 6   ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSY-DIMLLDIMLPGMDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               VRQ  L  D+ +  L  + +    + G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRD 124

Query: 121 QKSKDENQ 128
           ++ K E Q
Sbjct: 125 RRGKREIQ 132


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  E+ + PN +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIER-VNPNLIVMDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
             DE 
Sbjct: 127 EPDEE 131


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ +    +R++         + V+EA +  EA +   K    +  ++D  M G+  F
Sbjct: 2   NILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKND-IDLAILDIMMPGLDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   +++ V ++    + E  I G   GA+ +++KPF+   +   ++ L +   
Sbjct: 61  -KVLKKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVG 119

Query: 123 SKDEN 127
           +  +N
Sbjct: 120 TYSQN 124


>gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 233

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + ++        G+ V  A +  +A +     +LP+ +++D  + G  
Sbjct: 1   MSRVLVVEDESAIAELISINLRHAGYEVTIAATADQA-QLAIDSVLPDLVILDWMLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L      R      ++ V  L    +    +AG  AGA+ +L KPF+   L   +R + 
Sbjct: 60  GLALAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVL 119

Query: 119 QMQKSKDENQFLD 131
           + +  +  +  ++
Sbjct: 120 RRKAPEALDSAVE 132


>gi|315922180|ref|ZP_07918420.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313696055|gb|EFS32890.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1322

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+V+ +   R+      +   + V+EA++  EA E    E   + +V D  M G+  
Sbjct: 1074 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEA-EAIANEKEVDIIVSDVMMPGMDG 1131

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F     +++    + +F+  L      E  +AG ++GA+ +L KPFN + L+  ++ L  
Sbjct: 1132 FELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLLA 1191

Query: 120  MQKSKDE 126
            +Q+ + +
Sbjct: 1192 LQQKRKQ 1198


>gi|260173915|ref|ZP_05760327.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1308

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+V+ +   R+      +   + V+EA++  EA E    E   + +V D  M G+  
Sbjct: 1060 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEA-EAIANEKEVDIIVSDVMMPGMDG 1117

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F     +++    + +F+  L      E  +AG ++GA+ +L KPFN + L+  ++ L  
Sbjct: 1118 FELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLLA 1177

Query: 120  MQKSKDE 126
            +Q+ + +
Sbjct: 1178 LQQKRKQ 1184


>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 244

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA E   +      +++D  +  +    
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +         +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 67  VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125


>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
 gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
          Length = 244

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++         +         EA +  EKE +   +++D  + G   
Sbjct: 5   QKILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPV-ALIILDLMLPGIDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     ++V +  L  + +    + G   GA+ ++LKPF+ + L   ++ + +
Sbjct: 64  YEVCRRIR---TSSNVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RSQ 123


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++  +     GF+    T    A    E+E   +++V+D  +  +  
Sbjct: 10  KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPY-DFIVLDIMLPQLDG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G+   +  +  + D    +     GA+ ++ KPF+   L   ++ + +  
Sbjct: 69  IEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 128

Query: 122 KSK 124
           +++
Sbjct: 129 EAE 131


>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 234

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A +  +A +  + E  P  +++D  + G+  F
Sbjct: 5   KILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAEN-PKLILLDLMLPGLDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V++     ++ +  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123


>gi|126031096|pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D53a And Y102c
          Length = 127

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++   +    GF   EA     A      E  P+ +++   + G   
Sbjct: 3   RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLAWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+  + KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ +V+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLI-ANNRPDAVVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L + 
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120


>gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
           Bacillus Subtilis
          Length = 136

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 4   KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 63  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120

Query: 120 MQKSKD 125
             + + 
Sbjct: 121 RSEIRA 126


>gi|163849322|ref|YP_001637366.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527316|ref|YP_002571787.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
 gi|163670611|gb|ABY36977.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451195|gb|ACM55461.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
          Length = 390

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   +LL+VD    V ++   +    G+ V  A S  EA +   K  LP+ L+ D  + G
Sbjct: 1   MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN-LPDALICDVLLPG 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        VRQ PL   + +  L  + D    IAG  AGAN +L KPF  + L + ++ 
Sbjct: 60  IDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKN 119

Query: 117 LPQM 120
           +   
Sbjct: 120 ILAR 123


>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    + +    +    G+ V  A +     E  ++    + L++D  +    
Sbjct: 1   MK-ILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNY-DLLILDWMLPQQS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+   ++R    G    V +L  +   +  +AG  AGA+ +L+KPF    L   +R L 
Sbjct: 59  GLQICQYLRNQ--GDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 1128

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      ++
Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQA 844

Query: 124 KD---ENQFLDA 132
           +    EN+ L++
Sbjct: 845 EMRHIENKLLES 856


>gi|299147450|ref|ZP_07040515.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514728|gb|EFI38612.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1459

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+V+ ++ +R    ++ ++  + V EA +  E  ++  ++ +P+ ++ D  M  +  
Sbjct: 1196 TSILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYA-QQYIPDLIISDVMMPVMDG 1253

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  ++       + +  L  +   +  IAG   G + ++ KPF+   L+  +  L +
Sbjct: 1254 LDMVKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLR 1313

Query: 120  MQKSKDEN 127
             +K   E 
Sbjct: 1314 QRKQLQEL 1321


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +  + R    D G+ +       +A    E + + + +++D  + GV  
Sbjct: 3   KTILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQ-VWDAVILDLMLPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   + V  +         + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 62  LEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQ 121

Query: 122 KSKDENQFLDA 132
           ++  +N  +DA
Sbjct: 122 EAMGQNLLMDA 132


>gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +         F   +A+   EA +    + +P+ +++D  + G   
Sbjct: 3   KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREA-QAVIADCVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  +E+
Sbjct: 122 RTRDDEED 129


>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 227

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +  + GF V       +A     +E  P+ +++D  + G+  F
Sbjct: 4   RILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQF-QEHHPDLVLLDVMLPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +DV +  L    D   ++ G  AGA+ ++ KPF  + L   +R   + 
Sbjct: 63  DVCRAIR---HVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119

Query: 121 QKSKDENQ 128
           +     ++
Sbjct: 120 RDDNQADE 127


>gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 298

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++ +VD    +R++      D G+ V   T   +     E +  P+ +V+D  + G    
Sbjct: 63  TIWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQ-RPDLVVLDLMLPGDDGL 121

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D+ V  L    +    I G   GA+ +L KPF    L   +  + + +
Sbjct: 122 TLLRRLRDSSDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRRR 180


>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
 gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
          Length = 221

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           +LV+     R +  +     GF V  A +  EA      E+ P+ +V+D  +     +E 
Sbjct: 1   MLVEDEPAQRDILTYNLEADGFEVAAAENGEEAL-LLVDEVSPDIIVLDWMLPNVSGIEV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++       V +  L    +    + G   GA+ +++KP++   L   +R   +  +
Sbjct: 60  CRQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRTR 119

Query: 123 SKDENQFLD 131
                  L+
Sbjct: 120 PAAMGARLE 128


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+VD   ++ K  R+     G+ +  A+   EA +   K    + +++D  +     L
Sbjct: 4   KLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGS-FDLIILDLMLPKIDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    +   +  L  + +    I G   GA+ ++ KPFN   L+  ++ + + 
Sbjct: 63  EVCQTIRQ---TSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRR 119

Query: 121 QKSKDEN 127
            +SK+ N
Sbjct: 120 AQSKEGN 126


>gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 227

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    + ++        GF    A    EA     +   P  +++D  + G+  F
Sbjct: 5   SILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTP-PAGIILDLMLPGLDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P      +  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  EVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123

Query: 121 QKSKDENQF 129
              + E + 
Sbjct: 124 HAPETEKRQ 132


>gi|237711528|ref|ZP_04542009.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454223|gb|EEO59944.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1379

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+    +R   + LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1176

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L + 
Sbjct: 1177 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1236

Query: 121  QKSKDE 126
            +    +
Sbjct: 1237 RTELKQ 1242


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+++    +R + +       + + EA +  +A +   K+  P+ +++D  +  + 
Sbjct: 1   MEKILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVKQ--PDLVILDLMLPDID 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  +  +   +  I G   GA+ ++ KPFN   +   ++   
Sbjct: 59  GLSICKSIRKKYYY---PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQL 115

Query: 119 QMQKSKDEN 127
           +  K  DEN
Sbjct: 116 RRYKQYDEN 124


>gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
 gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
          Length = 1128

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      ++
Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQA 844

Query: 124 KD---ENQFLDA 132
           +    EN+ L++
Sbjct: 845 EMRHIENKLLES 856


>gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 239

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 7/129 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  ++ G+ V  A +  E  E  +KE  P+ +++D  M
Sbjct: 13  MKKKDIKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEK-PHLIILDVMM 71

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R +P  ++  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 72  PEMDGIEACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKV 131

Query: 115 RELPQMQKS 123
           + L +  KS
Sbjct: 132 KALLRRFKS 140


>gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R +  +      F   +A+   EA +    + +P+ +++D  + G   
Sbjct: 3   KRVLIVDDEVAIRDMVAYALRKGEFESLQASDAREA-QAVIADCVPDLILLDWMLPGTSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE     R+  L  ++ +  L    +    + G  AG + +++KPF+   L   +R + +
Sbjct: 62  LELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMR 121

Query: 120 MQKSKDEN 127
             +  +E+
Sbjct: 122 RTRDDEED 129


>gi|332828802|gb|EGK01494.1| hypothetical protein HMPREF9455_02327 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1473

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+    +R+   ++   + + V +A    E  +      +P+++V D  M  +   
Sbjct: 1215 TILVVEDDSDLRRFIVNILEPY-YNVLDAADGKEGYDKAVAN-VPDFIVSDIMMPEMDGT 1272

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R     + + V  L  + D E  +     GA+ ++ KPF+ + LR  +  + + 
Sbjct: 1273 ELLQKIRSTTEISHIPVILLTAKTDMESKLDSLDYGADDYITKPFSVKYLRARIENIIRQ 1332

Query: 121  QK 122
            +K
Sbjct: 1333 RK 1334


>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 242

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNQHAQIQ 143


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F      +  +A    E    PN +++D  + G+  
Sbjct: 5   QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFET-YEPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L  + +    + G   GA+ ++LKPF+ + +   +R + +
Sbjct: 64  YQVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLR 120

Query: 120 MQK 122
              
Sbjct: 121 RYH 123


>gi|75907014|ref|YP_321310.1| response regulator receiver domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75700739|gb|ABA20415.1| Response regulator receiver domain protein (CheY) [Anabaena
           variabilis ATCC 29413]
          Length = 125

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    + +   +     G+ V        A +   K+ +P+ +++D  +    
Sbjct: 1   MPHVLLVDDEVALCESLAYTLQKEGYTVTTVADGQSAIKQFHKQ-VPDVILLDLMLPEVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R     +DV +  L  +      I G  AGA+ ++ KPFN   L   ++ + 
Sbjct: 60  GMEVCWRIRA---FSDVPIVMLTAKDQDIDKIWGLEAGADDYVTKPFNTRELLARIKAVL 116

Query: 119 QMQKSKD 125
           + +  + 
Sbjct: 117 RRRAGEQ 123


>gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 428

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +    KV      + G+ +  AT    A +  E    P+ +++D  M  +  F
Sbjct: 10  TILIVDDNPTNLKVLSEAIANSGWEILVATDGETAIDQSEYAT-PDLILLDVIMPVMDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ V ++    D    I G   GA  ++ KPF  E +   ++   Q+
Sbjct: 69  ETCRRLKSNPATNEIPVIFMTALNDTVDKIKGLSLGAVDYITKPFQTEEVLARLKVHLQL 128

Query: 121 ----QKSKDENQFLDA 132
               ++ +D+N +L+ 
Sbjct: 129 HFLTKQLEDQNLYLEE 144


>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFK-FVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 242

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +  A    +  E  +  + P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIIIAVDGEDGWEKAQT-IFPDLIISDVMMPRANGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  DLLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V KV        G+ VF AT+  EA E   ++  P+ +V+D  +  +  F
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDS-PDLIVLDVMLPKMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 64  AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +  +     GF V  A    EA E    E  P ++++D  +     
Sbjct: 3   KKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAE-RPEFIILDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +     +  L  + D    I G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  VEVCKQLRQQKVM--TPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQK-SKDENQFLDAI 133
             + S  E + +D I
Sbjct: 120 RTQFSNGETEAIDKI 134


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD LL+++    +R   R L  + G+ + EA    E  +  +     + L+ID  M    
Sbjct: 1   MDKLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDST--FDLLIIDIMMPNIS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R+    + V + +L  +      +    AG + +L+KPF+   L   ++ L 
Sbjct: 59  GIEVCRRIREK---SYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALI 115

Query: 119 QMQKSKD 125
           +  +  D
Sbjct: 116 RRCRVYD 122


>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 269

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R + R  F   GF V EA+   EA      E + +  ++D  M  +  
Sbjct: 49  KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 107

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++R++   ++  +  L  +   E  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 108 LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLR 164

Query: 120 MQKSKDENQFLD 131
              + ++   LD
Sbjct: 165 RTGTLNDKNILD 176


>gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 260

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R++        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 1   MKISILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 60  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 120 LRRTNRAQLN 129


>gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase
           [Parvibaculum lavamentivorans DS-1]
          Length = 457

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F VF+A S  EA E   KE  P+ +++D  M G+  F
Sbjct: 4   RVLIVDDVPANLKLLDAKLTAEYFDVFKAASGPEALEAA-KEQQPDIILLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ MP    + V  +      +  + G  AGA+ FL KP N   L   +R L ++
Sbjct: 63  EVCRRLKAMPETEHIPVVMVTALDQPKDRVQGLEAGADDFLTKPLNDLALFARVRSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KMVTDELRMREA 134



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVLE 61
            +L +D      K            V  A +  E  +         + + +       L 
Sbjct: 157 RILAIDDRPTSLKRITETLASE-HNVTVAETQEELLQLANSGNFDLHIVSLTLQEFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +       +  ++ E D  +++     G N +L++P  R  L    R   + +
Sbjct: 216 LCSQLRSLEATRQTPILAIVEEGDTGRLVRALDMGVNDYLVRPVERNELVARARSQLRRK 275

Query: 122 KSKD 125
           + +D
Sbjct: 276 RYQD 279


>gi|186682033|ref|YP_001865229.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464485|gb|ACC80286.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 421

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V     N  GF    A     A    E+   P  +++D  M G+  F 
Sbjct: 10  ILIVDDNPTNLSVLCAALNSEGFRFRVAVDGETAIAQAERN-QPELILLDVQMPGIDGFE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   ++ + +     D E    G   GA  ++ KPF +E +   +R   Q++
Sbjct: 69  TCRRLKANPATQNIPIIFTTALADTESKTKGFSLGAVDYIPKPFAQEEVIARVRVHLQLK 128

Query: 122 KSKDENQF 129
           K  +  + 
Sbjct: 129 KLTESLEQ 136


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V KV        G+ V+ AT+  EA E   ++  P+ +V+D  +  +  F
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDS-PDLIVLDVMLPKMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 64  AVCRRIRAESV---VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 120


>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 297

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + ++   L +  GF V  A +  E  +   +++ P+ +++D  + G   
Sbjct: 65  RTILVVDDDPEIGRLVAALLSREGFDVRTAENGME-LDDVLRKVRPDLIILDLMLPGEDG 123

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         +  L  + D    + G   GA+ ++ KPF    L   +R L +
Sbjct: 124 LSICRRMRSEGAF---PILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLR 180

Query: 120 MQKSK 124
             +S+
Sbjct: 181 RTQSQ 185


>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFIA 64
           VD    +R++     +  G+ V  A    EA      E  P+ +V+D  M          
Sbjct: 2   VDDEASIRRILETRLSMIGYEVVTAADGEEAIATF-HESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 61  ELRKE---SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113


>gi|293368763|ref|ZP_06615367.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292636068|gb|EFF54556.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1343

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQA-SSLQPQMIVSDIMMPVMSGL 1149

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1150 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1209

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1210 RKLLQQ 1215


>gi|237712721|ref|ZP_04543202.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|229447235|gb|EEO53026.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
          Length = 1026

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+V+ +  +R     L  +  ++V   ++  +A     +E  P+ ++ D  M  +  
Sbjct: 780 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 837

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E  A V+     + + V  L    D + M+ G   GA++++ KPF+   LR  +R +  
Sbjct: 838 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 897

Query: 120 MQKSKDE 126
            +     
Sbjct: 898 NRALLRR 904


>gi|237726015|ref|ZP_04556496.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435823|gb|EEO45900.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1379

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+    +R   + LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1176

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L + 
Sbjct: 1177 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1236

Query: 121  QKSKDE 126
            +    +
Sbjct: 1237 RTELKQ 1242


>gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1172

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD +  +R     +     F V  A    E  EF E    P+ ++ D  M     
Sbjct: 814 TTILVVDDNPDLRNYVSRILRKSNFNVVLARDGAEGFEFAEIHH-PHVIITDLMMPVVSG 872

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+ I  +R+        +  L  + D +  I G   GA+++L KPFN   L   +R L  
Sbjct: 873 LDLIKMIREEKQLRGTPIILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLLV 932

Query: 120 MQKSKDENQFLD 131
           +++++   Q L+
Sbjct: 933 LKENERHMQELN 944



 Score = 96.4 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 13/144 (9%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD       +    F    + V  A    EA E  EK      ++ D+ M  +  
Sbjct: 10  TKILVVDDEPYNLDLLYRTF-FQNYKVLRAEGGSEALEVLEKSGEVAVIISDQRMPKMSG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMR----- 115
                       +     L    D E ++    +G    ++ KP++   L+  ++     
Sbjct: 69  TEFLSLTAEKYPNTIRIILTGYTDVEDLVEAINSGKVFKYVTKPWDDHELKALVKQGVDT 128

Query: 116 -ELP-----QMQKSKDENQFLDAI 133
             +      +++++  +   L A+
Sbjct: 129 HNVLKSHTEELRRALQQESLLYAV 152


>gi|294776618|ref|ZP_06742087.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294449533|gb|EFG18064.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1441

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1185 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1242

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I G + G + ++ KPF+ + L+  +  L + 
Sbjct: 1243 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1302

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+AI
Sbjct: 1303 RKVLQSAFLSKYGAQPKKEPLEAI 1326


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 234

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA +  E +  PN +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFE-QYSPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR      +V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 246

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R +        G+ + +A    +  +    +L P+ +++D  +  V 
Sbjct: 1   MPRILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKG-QALAVQLQPDLIMLDLMLPKVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L      +  + G  AGA+ +L KPF    +   +R L 
Sbjct: 60  GFTVCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D  V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|148546293|ref|YP_001266395.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510351|gb|ABQ77211.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 260

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++ +   +  GF V              +    + +++D  +     
Sbjct: 25  KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRHALETTPCDLVILDVMLPDEDG 83

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 84  FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 143

Query: 120 MQK 122
             +
Sbjct: 144 RSE 146


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA E       P+ LV+D  M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMI-ASDRPDALVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 123 SKDEN 127
             DE+
Sbjct: 121 PDDED 125


>gi|167032026|ref|YP_001667257.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858514|gb|ABY96921.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++ +   +  GF V              +    + +++D  +     
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRRALESTPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAE 127


>gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 231

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ LLLVD    +  + + L    GF +  A +  +A          + L++D  M    
Sbjct: 1   MNKLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQALSKL--NDTIDLLLLDIIMPKKN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +R+      + +  L         I G   GA+ ++ KPFN+  L   ++ + 
Sbjct: 59  GIDTLKEIRKNK--QHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAIL 116

Query: 119 QMQKSKDE 126
           +     ++
Sbjct: 117 RRSYLFNQ 124


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR   R   +  G+ V  A    +A E  +KE  P  +++D  M G+   
Sbjct: 2   KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKE-QPALVILDVMMPGMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G D  +  L    +    + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 118


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +     +     GF    A +  E       E  P+ +++D  + G   +
Sbjct: 4   NILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGVSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + V  L    +    + G  AGA+ +++KPF    L   +R + + 
Sbjct: 64  EVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILRR 123

Query: 121 QKSKD 125
            + + 
Sbjct: 124 VQPEQ 128


>gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712]
          Length = 269

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 2/116 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    V +V        G  V  A    EA      E   + +V+D  + G+   
Sbjct: 12  RILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRA-AERWADLIVLDLMLPGLDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R    G  V V  L    D E  I G   GA+ ++ KPF+   L   +  + 
Sbjct: 71  EVCRRLRATGP-VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVL 125


>gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 224

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+V+    +R++ R+     G+ V EA    +A +    + + + +++D  M  + 
Sbjct: 1   MNTILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTV-DLIILDIMMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              FI  +R   L     +  +  + D   +I     GA+ +L KPF+   L   +R + 
Sbjct: 60  GLSFIKTLR-FSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|265752955|ref|ZP_06088524.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236141|gb|EEZ21636.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1379

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+    +R   + LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 1119 KLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKE-IPDLVITDVMMPIMNGF 1176

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L + 
Sbjct: 1177 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIKS 1236

Query: 121  QKSKDE 126
            +    +
Sbjct: 1237 RTELKQ 1242


>gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein
           [Pseudomonas fluorescens SBW25]
 gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
           fluorescens SBW25]
          Length = 409

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LL+VD    VRK+   L    G+    A S  EA +   ++  P+ +++D  M G+   
Sbjct: 7   TLLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQP-PDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++       + +  L    +    + G  AGA  F+ KP  R  L   +R L ++
Sbjct: 66  EVASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
 gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
          Length = 234

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA +  E +  PN +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFE-QYNPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR      +V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
          Length = 240

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 15  RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + +   
Sbjct: 74  GVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 123 ---SKDENQFL 130
              ++  N  L
Sbjct: 134 KGSAEPRNSRL 144


>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  +     +  G  V++A    +A    E+   P  +++D  + G+ 
Sbjct: 1   MARVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQH-QPQLIILDWMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR   L   + +  L    +    I G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GLSVCRRVRLNYL---MPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAIL 116

Query: 119 QMQKSKDENQFLD 131
           +     D +Q L 
Sbjct: 117 RRV---DLDQRLA 126


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++ ++      + V  A    EA +  +KE  P+ +++D  + G   +
Sbjct: 5   KILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEK-PSLILLDLMLPGISGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +++ +  L  + D    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  EVCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRR 123


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    EA      +  P+ +V+D  +  +  F
Sbjct: 25  TVLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIF-HQDQPDLIVLDVMLPKLDGF 83

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 84  AVCRRLRAESC---VPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
 gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + R      GF V  A           KE   + +++D  + GV  
Sbjct: 3   KRILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEE-FDLIILDLMLPGVDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VR      +  +  +  + D    I G   GA+ ++ KPF+   L   ++    
Sbjct: 62  FEICREVRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLS 118

Query: 120 MQK 122
             +
Sbjct: 119 RYE 121


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          +     G+ V  A +  +           + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGA-DLVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  L  + D    + G   GA+ ++ KP++   L   ++ + 
Sbjct: 60  GTEVCREIR---RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVL 116

Query: 119 QMQKSKDENQ 128
           + +    E +
Sbjct: 117 RRRHDSGEAE 126


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|218781907|ref|YP_002433225.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763291|gb|ACL05757.1| cyclic nucleotide-binding protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 884

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I   V     +   + V  A +  EA    + +  P+ +++D  M  +  F
Sbjct: 7   KILIVDDEKIHISVLTKFLSG-DYDVSIALNGAEALMRAKADPPPDLILLDVMMPEMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V +L  + D E    G   GA  F+ KPF    L   +R    M
Sbjct: 66  EVCRRLKSDKSLKSIPVIFLTTKDDEENTARGFELGAVDFIRKPFRPAVLSARIRTHLAM 125

Query: 121 QKSKDENQF 129
              K   + 
Sbjct: 126 SNQKQLLEQ 134


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ LL++D   +  K  +    + GF V  A    +  +        + +++D  +  + 
Sbjct: 1   MEKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNY-DLVILDIMLPKLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +++ +  L    D    I G   GA+ +L KPFN   L   +R L 
Sbjct: 60  GFSVCREIR---TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALL 116

Query: 119 QMQ-----KSKDENQF 129
           +       K KDE + 
Sbjct: 117 RRATNPYIKRKDEIRR 132


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+VD    +R +        G+ V  A +  +A +   +   P+ +++D ++   G  
Sbjct: 28  RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHD-PDLILLDVNLPDLGGF 86

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G  V V +L      +  + G   G + F+ KPF  + +   +R L + 
Sbjct: 87  EVCRTLR--DRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRR 144


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +  + +      GF V  A       E  EK+     +V+D  +  +   
Sbjct: 4   KVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAV-LIVLDLMLPEMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  +  L  + D    + G   GA+ +L KPF+   +   ++ + +   
Sbjct: 63  EVCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSA 122

Query: 123 SKD 125
            ++
Sbjct: 123 PQE 125


>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
 gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+         G+ VF+A    E  +  EKE   +  ++D  M  + 
Sbjct: 3   MNHVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEE-IHLAIVDVMMPRMD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D  V +L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 62  GIQMTIKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 120

Query: 121 QK--SKDENQF 129
            +  ++  NQ 
Sbjct: 121 YRKFAEKLNQR 131


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R      GF+V EA    +A +     +  + +++D  +  +  +
Sbjct: 6   RILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMI-SSVSYDLIILDLMLPVIDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      D  V  L    +    + G   GA+ +++KPF+   L   ++ L +   
Sbjct: 65  TVCKKIREKY-DTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMA 123

Query: 123 SKD 125
           SK 
Sbjct: 124 SKQ 126


>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   E  +  E E   +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETE-QVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDENQ 128
                E +
Sbjct: 120 SNQASEAK 127


>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 231

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R       F V EA    EA     ++     +++D  M  +   
Sbjct: 5   KILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIRKESK---VPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLD 131
                 ++ L 
Sbjct: 122 TNQISADETLS 132


>gi|312889015|ref|ZP_07748575.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311298533|gb|EFQ75642.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1377

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +LL++D +  +R+  R +F    + ++EA +  E  E   KE LP+ ++ D  M G+  
Sbjct: 1111 KTLLVIDDNQDIREYIRQVF-KLDYNIYEANNGEEGYELI-KEHLPDIVISDVMMPGMSG 1168

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E  + V++    + + V  L      E  + G   GA+ ++ KPF++E L+  +  L +
Sbjct: 1169 IELCSLVKEDMAISHIPVILLTASSSPEIKLKGIEGGADDYISKPFDKEILKARVTGLLK 1228

Query: 120  MQKSKDE 126
             + +  +
Sbjct: 1229 SRNTLQQ 1235


>gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1111

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 767

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 768 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 827

Query: 124 K---DENQFLDA 132
           +    EN+ L++
Sbjct: 828 EMRHMENKVLES 839


>gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           Peru-466]
 gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
           AN-5034]
 gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 1111

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 767

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 768 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 827

Query: 124 K---DENQFLDA 132
           +    EN+ L++
Sbjct: 828 EMRHMENKVLES 839


>gi|260909644|ref|ZP_05916341.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 472 str. F0295]
 gi|260636255|gb|EEX54248.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 472 str. F0295]
          Length = 935

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D +  V        +D  + +  A    +  E  E +L+P+ +V D  M G+  
Sbjct: 683 QRVLVIDDNADVAAFIGSQLSDK-YGIIYAHDGQDGLEKAE-QLVPDVIVTDLMMPGIDG 740

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R   + + + +  +  ++     + G  AGA+++L KPFNR+ LR  + +L +
Sbjct: 741 LEVCRRIRANEVTSHIPIIVVTAKITENDRVKGLEAGADAYLSKPFNRDELRMRVEKLLE 800

Query: 120 MQKSKD 125
            ++   
Sbjct: 801 QRRMLR 806


>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 224

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E       P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 117 RRVKKKE 123


>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 224

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 116

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 117 RRVKKKE 123


>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
 gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
          Length = 235

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+         G+ V++A    E  E  E+E   +  ++D  M  + 
Sbjct: 3   MNHVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIERED-IHLAIVDVMMPRMD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR      D  V  L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 62  GITMVVRLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRR 120

Query: 121 QKSKDE 126
            +   E
Sbjct: 121 YRKFAE 126


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
          Length = 240

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 15  RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + +   
Sbjct: 74  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 123 ---SKDENQFL 130
              ++  N  L
Sbjct: 134 KGSAEPRNSRL 144


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
 gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E   K    + L++D  +  +  
Sbjct: 3   KRVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELA-KNNEYDLLLLDVMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     +DV +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FAVCQQIR---DFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDE 126
               K+E
Sbjct: 119 RTGRKEE 125


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+          + +  A    EARE C     P+ +++D  M G    
Sbjct: 5   KILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTA-QPDLVLLDIMMPGEDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R+        V  L    D    I G   GA+ ++ KPFN   L   ++ + +   
Sbjct: 64  -SLLREWQATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRAG 122

Query: 123 SKDEN 127
            +  N
Sbjct: 123 GEGAN 127


>gi|224538431|ref|ZP_03678970.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519936|gb|EEF89041.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1426

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R    ++     + + EA       +      +P+ ++ D  M  +    
Sbjct: 1179 ILIVEDNEELRHFLVNMLQK-DYRILEAADGKSGLD-LTVSAMPDLIISDIMMPVMDGIE 1236

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             +  V++    + +    L  +   +  I G   GA+ ++ KPF+   L+  +  L + +
Sbjct: 1237 LLEAVKKNHDISHIPFILLSAKASLDDRIQGLEYGADDYITKPFSSSYLKARISSLLKQR 1296

Query: 122  KSKDE 126
             +   
Sbjct: 1297 DALRR 1301


>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
 gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
          Length = 236

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  + R+     G+ V       EA E   +E  P+ L++D  + G  
Sbjct: 6   MPKVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEA-EIRLRETQPDLLLLDWMLPGLS 64

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + V  L    +  + I G   GA+ +++KPF+   L   +R + 
Sbjct: 65  GIELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAIL 124

Query: 119 QM 120
           + 
Sbjct: 125 RR 126


>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 233

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   NILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|319640287|ref|ZP_07995012.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388062|gb|EFV68916.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1346

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1208 ESRKLLAE 1215


>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 719

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+  H +  + R    D G+++        A +  EK+   + +++D  +  V 
Sbjct: 1   MKQILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPW-DAVILDLMLPNVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   +   + V  +         I G   GA+ +L KPF+ + L   ++ L + 
Sbjct: 60  GLEICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 119

Query: 121 QKSKDENQ 128
           Q++  + Q
Sbjct: 120 QQAMGQAQ 127


>gi|294777704|ref|ZP_06743155.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448772|gb|EFG17321.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1346

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1208 ESRKLLAE 1215


>gi|265753055|ref|ZP_06088624.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236241|gb|EEZ21736.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1351

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1095 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1152

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1153 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1213 ESRKLLAE 1220


>gi|254881285|ref|ZP_05253995.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254834078|gb|EET14387.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1351

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1095 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1152

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1153 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1212

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1213 ESRKLLAE 1220


>gi|237711636|ref|ZP_04542117.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454331|gb|EEO60052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1356

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1100 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1157

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1158 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1217

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1218 ESRKLLAE 1225


>gi|237725922|ref|ZP_04556403.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435730|gb|EEO45807.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1344

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1088 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1145

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1146 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1205

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1206 ESRKLLAE 1213


>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
 gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +    + GF V EA    EA +    +     +++D  M  +  +
Sbjct: 5   KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   + V V  L    +    + G   G + ++ KPF+ + L   +  + +   
Sbjct: 65  -EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123

Query: 123 S 123
            
Sbjct: 124 M 124


>gi|212695343|ref|ZP_03303471.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855]
 gi|212662072|gb|EEB22646.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855]
          Length = 1346

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1208 ESRKLLAE 1215


>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 237

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD      ++ +      G+ V  A    EA     + LLPN +++D  +     L
Sbjct: 14  KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKA-RSLLPNLIILDLMIPEVDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           E    +R+    + + +  L  +      + G   GA+ ++ KPF+   L   ++ L +
Sbjct: 73  EVCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLR 131


>gi|218780205|ref|YP_002431523.1| response regulator receiver protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761589|gb|ACL04055.1| Protein with response regulator receiver domain [Desulfatibacillum
           alkenivorans AK-01]
          Length = 305

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D   + R++         + V  A    +  E  ++   P+ +++D  M G+  F 
Sbjct: 6   ILITDDEPMQRELLEEYLKLSHYRVTHAKDGNQCLEMMQQHE-PDLVLLDIQMPGMDGFA 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R++P   D  V +L         + G   GA+ ++ KPF+   L   ++   +  
Sbjct: 65  TLTQIRKIPAIADTPVLFLSSLDRQHLKVKGLELGADDYITKPFHPPELLARVKASLRRT 124

Query: 122 KSKDENQFLDA 132
               + + L A
Sbjct: 125 MRYRKTEGLMA 135


>gi|150003414|ref|YP_001298158.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931838|gb|ABR38536.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1346

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQAL-GCIPDIIVSDIMMPVMN 1147

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1148 GIVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLL 1207

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1208 ESRKLLAE 1215


>gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
 gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
          Length = 242

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +        GF V  A    E   F + +  P+ +++D  + G   
Sbjct: 5   THILVVDDDEEIRLLLDEYLTKSGFQVSTAEDGVEMELFIKAKGYPDLILLDVMLPGDDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     + V +  L    D    I G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  FTLCQRVR-RDSQVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRT 123

Query: 122 KS 123
             
Sbjct: 124 HL 125


>gi|156743164|ref|YP_001433293.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus castenholzii DSM 13941]
 gi|156234492|gb|ABU59275.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus castenholzii DSM 13941]
          Length = 443

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    VR++   +    G+ VF   +  +      +E +P+ +++D  M  +  
Sbjct: 3   KRILIADDEPAVRQLLELVLRSQGYEVFVTQNGDQ-LVRTAQEWIPDLVIVDLMMPQMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +R       V +  L      E ++ G   GA+ ++ KPFN   L   +R   +
Sbjct: 62  YEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYITKPFNIPELLARIRAHLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
 gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
 gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
          Length = 225

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   E  E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEG-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDENQ 128
                E +
Sbjct: 120 SNQASEAK 127


>gi|302338300|ref|YP_003803506.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635485|gb|ADK80912.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    V K+        G+    A +  E  E       P+ +++D  + G   
Sbjct: 10  KTILVVDDEEHVVKLLSMNLTSRGYDCLCAYTGEEGLEQARSHH-PDLIILDVMLPGIDG 68

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    ++  P    + V  L  + +    I G   GA+ ++ KPF+   L   +    +
Sbjct: 69  IEVCRLLKSDPRTQLIPVLMLSAKSEGIDKIHGLEGGADDYITKPFSLRELFLRVEASLR 128

Query: 120 M 120
            
Sbjct: 129 Q 129


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA E       P+ LV+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMI-ASDRPDALVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 123 SKD 125
            +D
Sbjct: 123 LED 125


>gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 249

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    + ++        G+ V +A    +  +    +L+P+ +++D  +  V
Sbjct: 1   MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKG-QALAVQLVPDLIMLDLMLPRV 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L
Sbjct: 60  DGFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRAL 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLL++    + ++    F   GF V +     +A    E E +P+ +++D  +E    +E
Sbjct: 6   LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVE-ERVPDIVLLDWMIESLPGIE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+ P   +V +  L    + E  I G   GA+ ++ KPF+   L   +  + +  
Sbjct: 65  VCRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRL 124

Query: 122 KSKDENQFLD 131
           +     + L 
Sbjct: 125 RPALAGEMLS 134


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +  + +      G+ V  A    EA +  E E  P+ +++D+ +    
Sbjct: 1   MSKILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEE-PDLVLLDQMLPEVE 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R     +   V  +  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GTEVLRQIR---TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANL 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 773

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    +  E  ++E  P  +++D  M G+    
Sbjct: 368 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREK-PELVLLDIMMPGMSGYQ 426

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 427 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 484

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 485 ASKAELRRIE 494


>gi|119488053|ref|ZP_01621497.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119455342|gb|EAW36481.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 469

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    KV      DFGF V  A          EK + P+ +++D  M GV  F 
Sbjct: 9   ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEK-IKPDLILLDVMMPGVDGFE 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++ +    D+ V ++    D    + G   GA  ++ KP   E     +    +++
Sbjct: 68  TCRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQHEEAIARVNVHLKLR 127

Query: 122 ----KSKDENQFLDA 132
               + + +N  L+ 
Sbjct: 128 SLTKQLEQQNHLLEE 142


>gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 242

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +++VD    +R++     +  GF V  A           + + P+ +++D  + G   
Sbjct: 6   KHIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGET-LFKLLEGVTPDLIILDIMLPGDDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    D    I G   GA+ ++ KPFN   L   M+ + +
Sbjct: 65  FTICQRLRKS---STVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILR 121

Query: 120 MQKSKD 125
             + K 
Sbjct: 122 RVQPKQ 127


>gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 225

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA    EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +     TD+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F      +  +A    E    PN +++D  + G+  
Sbjct: 5   QRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFET-YEPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L  + +    + G   GA+ ++LKPF+ + +   +R + +
Sbjct: 64  YQVCREIRAKSG---VPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLR 120

Query: 120 MQK 122
              
Sbjct: 121 RYH 123


>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
 gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +RK+        G+ V EA    EA +   ++     LV+D  M      
Sbjct: 5   KILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPRINGF 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    + V +  L  + D    + G   GA+ ++ KPF+ + L   +  L + 
Sbjct: 65  EVCREIRQ---TSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRR 121


>gi|77919939|ref|YP_357754.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546022|gb|ABA89584.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Pelobacter carbinolicus DSM 2380]
          Length = 455

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R+    +  D GF    A +  +A      E  P+ +++D  + G+ 
Sbjct: 1   MKTILIVDDEQSIRESLDGILQDEGFRTLSAETGEDALTLLCGEN-PDLILLDIWLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  +      E  +   + GA  F+ KP + E +  ++    ++
Sbjct: 60  GLETLRRIRDNDPEQIVIMMSGHGTIETAVKATKLGAYDFIEKPLSLEKVLISIENALKV 119

Query: 121 QKSKDENQFLDA 132
            +  +EN+ L A
Sbjct: 120 GRLVEENRSLKA 131


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + ++  +     G     A    EA   C +E  P  +++D  +     F 
Sbjct: 33  VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEAL-RCIEERRPQVIILDVMLPDTDGFT 91

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                   G    +  L         + G   GA+ ++ KPF+   L   ++ L +  + 
Sbjct: 92  LCRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEG 151

Query: 124 KDEN 127
           + + 
Sbjct: 152 RRQQ 155


>gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
 gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
          Length = 1382

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R+    L    G  V        A +       P+ +V D  M  +   
Sbjct: 632 RVLVADDNADMREYLTRLLRSAGHEVRAVADGRAALDAARAHT-PDLVVSDVMMPRLDGL 690

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R         V  L      E  I G  AGA+ +L+KPF    L   +R   ++
Sbjct: 691 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRANVEL 750

Query: 121 QKSKDENQF 129
            + ++ +  
Sbjct: 751 ARLRNHHAR 759


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  EA +  EK    + +++D  +    
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGA-DIVLLDLMLPEKS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V +  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRELR---TTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
 gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
          Length = 234

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+VD    +R++         F V EA +     E    E  P+ +++D  +     
Sbjct: 4   NRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDE-RPDLVLLDWMLPSVTG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     +V +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLR 122

Query: 120 MQKSKDENQFLD 131
              S    + ++
Sbjct: 123 RASSVAAEKAIE 134


>gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp]
 gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp]
          Length = 245

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++    F++ G+ V    +V +  +      L N +V+D  + G    
Sbjct: 13  KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQ-MDRLLARELFNLVVLDLMLPGEDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 72  SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 130


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R +     +  GF V  AT+  EA +   +   P+ +V+D  +  +  F
Sbjct: 8   TIVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTN-PDLIVMDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V +L    D +  + G   G + ++ KPF+ E +   +R + +  K
Sbjct: 67  TVTRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTK 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQAED 131


>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD   ++R++ +      G  V EA    EA E C+     + +++D  M  + 
Sbjct: 1   MYKLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMN-QFDLIIMDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    TD  V  L    +    I G   G + +++KPF+ + L   +  + 
Sbjct: 60  GFSACREIRK---FTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAII 116

Query: 119 QMQKSKDE 126
           +  K K+E
Sbjct: 117 KRGKVKEE 124


>gi|290960601|ref|YP_003491783.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260650127|emb|CBG73243.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 464

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL++    + +        FG  V    +  +      +    + +++D  +  +   
Sbjct: 4   RVLLIEDDETIAEPLADGLRHFGLTVHHVATGADGL----RGPYGDVVLLDLGLPDMDGI 59

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +DV +  L    +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 60  DVCRGIR---RTSDVPLIILSARGEEADRVLGLELGADDYLAKPFSIRELVARIRAVSRR 116

Query: 121 QK 122
            +
Sbjct: 117 HR 118


>gi|260174235|ref|ZP_05760647.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315922504|ref|ZP_07918744.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696379|gb|EFS33214.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1343

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQA-SSLQPQMIVSDIMMPVMSGL 1149

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1150 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1209

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1210 RKLLQQ 1215


>gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 235

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    +     A+   +  +LP+ +++D  + 
Sbjct: 1   MKKLPRVLIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L      R       + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLMLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|237718248|ref|ZP_04548729.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452432|gb|EEO58223.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1324

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +RKV   +F    + V+ A    E  E     L P  +V D  M  +   
Sbjct: 1073 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQA-SSLQPQMIVSDIMMPVMSGL 1130

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  + G + GA+ ++ KPFN + L      + Q 
Sbjct: 1131 EMCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQT 1190

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1191 RKLLQQ 1196


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +   F V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 27  SIVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 85

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 86  TVTRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 145

Query: 123 SKDEN 127
            + E 
Sbjct: 146 EQTEE 150


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +  F   G++V  A +  EA    ++    + +++D  M  +  F
Sbjct: 4   KILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNY-DLILLDIMMPKLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R++   +DV V  L    +    + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  -EALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRR 119


>gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 275

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +     +  GF    A    E     E     + +V+D  + G     
Sbjct: 7   ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRY-DLVVLDVMLPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R++   +++ V  L    D    I G   GA+ ++ KPFN   L   +R + +  ++
Sbjct: 66  LC-RKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARA 124

Query: 124 KDEN 127
             EN
Sbjct: 125 LPEN 128


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + K+  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  IEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K + E
Sbjct: 122 KGEQE 126


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + K+  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K + E
Sbjct: 122 KGEQE 126


>gi|208702171|ref|YP_002267282.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|208658026|gb|ACI30396.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 226

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+V+   I+R+   H F+  G+ V  A       +   E+E   + +++D  +  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 61  DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117

Query: 118 PQMQKSKDENQ 128
            +    + ++Q
Sbjct: 118 FKDTNQQVQHQ 128


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F          A    +    PN +++D  + G+  
Sbjct: 4   QKILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDT-YKPNLILLDLMLPGIDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 63  YQVCREIRTR---SNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLR 119

Query: 120 MQK 122
             +
Sbjct: 120 RYQ 122


>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|284993166|ref|YP_003411721.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
 gi|284066412|gb|ADB77350.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
          Length = 919

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD +  +R     L +   + V  AT+  EA +       P+ +V D  M G+  
Sbjct: 598 TSVLVVDDNADMRAYLTRLLSPV-WTVRTATNGQEALDAVRAA-RPHVVVTDVMMPGLDG 655

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  +  +R  P   DV V  L      E  + G  AG + +L KPF    L   +R + +
Sbjct: 656 FDLLRALRADPALRDVPVVMLTARAGQEAAVEGFDAGVDDYLAKPFESAELIGRLRAVVE 715

Query: 120 MQKSKD 125
               + 
Sbjct: 716 RAAGRA 721


>gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 228

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+V+    +R++     +   + V EA     A         P  +++D  M G   
Sbjct: 3   NKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKL--GEKPELILLDWMMPGRSG 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +  I ++++ P    + +  L      E  I G  AGA+ ++ KPF+ + L   +  + +
Sbjct: 60  IHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
 gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
          Length = 235

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + K+ +       F    A     A +  +++  P+ +V+D  +    
Sbjct: 1   MK-ILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQ-APDLIVLDLMLPKLD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     D ++  L  + +    + G   GA+ +L+KPF+   L   +R L 
Sbjct: 59  GLEVCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|331243018|ref|XP_003334153.1| transcriptional activator protein copR [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|309313143|gb|EFP89734.1| transcriptional activator protein copR [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 2152

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+ D +  +R   + + + + + V EA    +A +  +    P+ LV D  M G+  F
Sbjct: 1378 TVLIADDNSDMRAFLKSVLSRY-YNVVEAVDGQQAYQLAKLN-RPDILVSDVMMPGMDGF 1435

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++       + V  L      E  I G   GA+ +L+KPF  + L   +    Q+
Sbjct: 1436 ELLRRLKADSDTAGMSVILLSARAGSESRIEGLAEGADDYLVKPFEAKELVARVNTHLQI 1495

Query: 121  QKSKDENQ 128
             K +   +
Sbjct: 1496 AKMRQRLE 1503



 Score =  109 bits (275), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 13/137 (9%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDE 54
              +L+V+ + I  KV +      G+MV  A    EA      +          + +++D 
Sbjct: 2015 THVLVVEDNTINVKVIKRQLTLKGYMVSVAMDGREALNRLYADASETSELPPIDIVLMDI 2074

Query: 55   SMEGVLEFIA--HVRQMPLGTDV----FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
             M  +    A  H+R      ++     V  +      E+      +G +S  +KP+  +
Sbjct: 2075 QMPVMNGLEAITHLRAAEKTGEIKKRYPVIAVTGNARKEQTEQCLASGFDSICVKPYKID 2134

Query: 109  TLRFAMRELPQMQKSKD 125
             ++  M  L    +  D
Sbjct: 2135 DVQSRMEALLANLELND 2151


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  R         V  A    EA     K+   + +++D  +    
Sbjct: 1   MARILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLA-KQKEYDVVLLDVMLPKFD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +++ +  L  + +    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GYEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116

Query: 119 QM--QKSKDENQ 128
           +   +K++ E++
Sbjct: 117 RRNTKKNRRESR 128


>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 230

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V        GF    A+    A    +++  P+ +V+D  +  +   
Sbjct: 4   RILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAIN-AQQQEDPDLIVLDIGLPEMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     V + +L    +    I G   GA+ +L KPF+   L   ++ + + 
Sbjct: 63  EVCREIRKISE---VPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKR 119


>gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
 gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio
           mimicus VM603]
          Length = 769

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V  A    E  E  ++E  P  L++D  M G+    
Sbjct: 364 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREK-PELLLLDIMMPGMSGYQ 422

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 423 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 480

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 481 ASKAELRRIE 490


>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 224

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+    +         +FG  V  A       E   +E + + L+ID  M G+ 
Sbjct: 1   MAKILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQE-VFDLLIIDIIMPGMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     R+      V V  L      E ++ G  AGA+ +L+KPF+ + L   ++ + 
Sbjct: 60  GLELCRLYRRQYGYL-VPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAIL 118

Query: 119 QMQKSKDENQF 129
           +  +     Q 
Sbjct: 119 RRGREDSARQL 129


>gi|159030410|emb|CAO91308.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 378

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D   +++   R       + VF A+   E  +    +L P  ++ D  M G+ 
Sbjct: 1   MVRILVIDDDGVIQTFLRRALQKE-YEVFVASDGEEGLKQA-GQLKPAMIICDWMMPGID 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +  F   L      E  + G  AGA+ FL KP     L+  +R   
Sbjct: 59  GLEVCRQIKLNPQLSTTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEINELKARVRAGM 118

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 119 RLHQLSHDLQAQKQLLE 135


>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
           132]
 gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
 gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
 gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
 gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus MW2]
 gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
 gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 04-02981]
 gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
 gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
 gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 241

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA E   +      +++D  +  +    
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +         +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 64  VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122


>gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
           3_1_45B]
          Length = 241

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++        G+    A S  EA +   +   P+ +V+D  M G+  
Sbjct: 3   KRILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGR-FSPDLVVLDVMMPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  + H+R     + + V  L  +   +  I G   GA+ +L KPF  + L   +  + +
Sbjct: 62  FEVLEHLR---HASSIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSR 121


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R    D G+ +  A          E+    + LV+D  + GV  
Sbjct: 5   KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHW-DALVLDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRT 123

Query: 122 KSKDENQFLDA 132
            +   N  L++
Sbjct: 124 DALARNARLES 134


>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 232

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 8/138 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            +LLVD    VR+  +        F V  A++  EA +   +E +P  ++ D  M     
Sbjct: 7   KVLLVDDEPGVRESVQAYLQYGDEFEVRTASNANEAWDLLNQE-IPELVISDIMMPQVDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R+      + V +L         I G  AG +++L KPF+ E L   ++ L +
Sbjct: 66  YQFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIE 125

Query: 120 MQK----SKDENQFLDAI 133
            ++    +  EN  L+ I
Sbjct: 126 RRRQSLQATSENARLEEI 143


>gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 1129

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V  A    E  E  EKE  P  L++D  M G+      
Sbjct: 727 IADDEPVSLRVLDSFLKLEGYRVRTACDGPETIELIEKEK-PELLLLDIMMPGMSGYQVC 785

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R+      + +  L      E  + G  AGAN +L KPFN++ L   +        S
Sbjct: 786 ETLRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHL--SAS 843

Query: 124 KDENQFLD 131
           K E + L+
Sbjct: 844 KAEQRRLE 851


>gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus AQ3810]
 gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio
           parahaemolyticus 10329]
          Length = 1128

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ V   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++      K+
Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKA 844

Query: 124 K---DENQFLDA 132
           +    EN+ L++
Sbjct: 845 EMRHMENKVLES 856


>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 248

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 6/123 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    +R++     +  G+ V  A++  EA E   + L P+ +V+D  M       
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKF-RNLEPDLVVLDVMMPKLDGYG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + +  
Sbjct: 70  VIQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRI 126

Query: 122 KSK 124
           + +
Sbjct: 127 EKE 129


>gi|300867936|ref|ZP_07112576.1| response regulator receiver modulated serine phosphatase
           [Oscillatoria sp. PCC 6506]
 gi|300334073|emb|CBN57754.1| response regulator receiver modulated serine phosphatase
           [Oscillatoria sp. PCC 6506]
          Length = 377

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    V+++ R      G+ V  A++  +      ++L P  ++ D  M    
Sbjct: 1   MFQILVIDDDTAVQELLRRTLKKQGYEVTVASNGEDGITQA-QQLRPALIICDWIMPRLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    V+  P  +    + L         + G  AGA+ F+ KP     L+  +R   
Sbjct: 60  GIEVCRRVKANPDLSTTQFFLLTSLGSVADRVKGLDAGADDFISKPIELNELQARVRAGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + Q
Sbjct: 120 RLHQLSRDLQ 129


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR   R   +  G+ V  A    +A E  +KE  P  +++D  M  + 
Sbjct: 24  MK-ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKE-QPALVILDVMMPRMD 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G D  +  L    +    + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 82  GLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141


>gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 254

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK--ELLPNYLVIDESMEG- 58
             LL+V+    +R+         GF V        A            + +V+D  + G 
Sbjct: 25  RRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGL 84

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L+    +R++       +  +         + G   GA+ +L+KPF    L    R L
Sbjct: 85  GGLDLCRELRRLNNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRAL 142

Query: 118 PQMQKSKD 125
            +     +
Sbjct: 143 LRRSSQSE 150


>gi|291569601|dbj|BAI91873.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 379

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD +    +V      D  + V  A +   A         P+ +++D  M  +   
Sbjct: 10  SILIVDDTPDNLRVLSATLGDRDYDVQCAINGQLAL-MAVANQPPDLVLLDIKMPEMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V +L    D    +     G   ++ KPF  E +   +     +
Sbjct: 69  QVCEALKSQQKTADIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTI 128

Query: 121 QKSKDENQ 128
           ++ + + Q
Sbjct: 129 RRLQKQLQ 136


>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA +  E +  PN +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFE-QYNPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR      +V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 229

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ VF A +  E     +K + P+ +++D  M  +  
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKK-VHPDLIILDIMMPKMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R +P   + F+ +L    +    IAG   GA+ ++ KP     L   +  + +
Sbjct: 65  IEACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124

Query: 120 MQKSKDE 126
              S DE
Sbjct: 125 RNSSSDE 131


>gi|332885780|gb|EGK06026.1| hypothetical protein HMPREF9456_02290 [Dysgonomonas mossii DSM 22836]
          Length = 1335

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L++D    +R        +  F V  A    +  +    + LP+ ++ D  M  +   
Sbjct: 1078 KILIIDDEEEIRDFLSQELGEL-FKVITAVDGVDGLQVAI-DRLPDLIISDVMMPNMDGL 1135

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++     + + +  L  + +++  I G   GA+++L KPFN E L   +  L   
Sbjct: 1136 NLLKRLKNNNNVSHIPIILLTSKAEYQDRIQGLDRGADAYLSKPFNIEELIVTINNLILN 1195

Query: 121  QKSKD 125
            ++   
Sbjct: 1196 RRLLK 1200


>gi|313497378|gb|ADR58744.1| GltR_2 [Pseudomonas putida BIRD-1]
          Length = 241

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++ +   +  GF V              +    + +++D  +     
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRHALETTPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RTE 127


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A    EA     +EL P+ +V+D  +  +   
Sbjct: 21  RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAI-RITRELRPDAVVLDVMLPDMDGL 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D+ V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 80  TVLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139

Query: 123 SKD 125
           +  
Sbjct: 140 AAA 142


>gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 242

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    ++++        G MV  A     A +     +LP+ +++D  +     L
Sbjct: 4   TILIVEDELAIQELIALNLKKAGHMVLCAGDATHA-KLLINNVLPDLVLLDWMLPDITGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   +R+      + +  L   +     IAG  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EFARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
           +  +  ++ +D
Sbjct: 123 RLPEMSDEIID 133


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  A +  +A    ++   P+ +V+D  +  +  F
Sbjct: 8   RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRH-RPDLIVLDVMLPDMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    GTD  V +L      E  I G  AG + ++ KPF+ E +   +R + +   
Sbjct: 67  DVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTG 126

Query: 123 S 123
           +
Sbjct: 127 A 127


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+  +  G+ V       EA     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRL-KERVPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKD 125
              + 
Sbjct: 123 ASPER 127


>gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 260

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R +        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 60  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 120 LRRTNRAQLN 129


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 121 RRIEVHDE 128


>gi|26987748|ref|NP_743173.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982439|gb|AAN66637.1|AE016291_6 DNA-binding response regulator GltR [Pseudomonas putida KT2440]
          Length = 241

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++ +   +  GF V              +    + +++D  +     
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGK-GFRHALETTPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RTE 127


>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 10/140 (7%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+ D    + ++        G+ V +AT   +A E  + +   + +V+D  M  
Sbjct: 1   MKPITILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQ-AIDLVVLDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+    ++ + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRTKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM------QKSKDENQFLDA 132
           +        K ++E   L+A
Sbjct: 119 RRFLTLNQPKVEEETSVLEA 138


>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 238

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+     R+   +     G+ V  A    +A E  E+    + +++D  + G  
Sbjct: 1   MTRILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R   L +DV V  L  + D    + G   GA+ ++ KP++   L   MR + 
Sbjct: 60  GTEVCRRLR---LTSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVL 116

Query: 119 QMQK 122
           + ++
Sbjct: 117 RRRE 120


>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R++ +       F + EA    EA E   +      +++D  +  +
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNY-ACILLDLMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 60  DGIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118

Query: 120 MQKSKDENQ 128
             ++ +  Q
Sbjct: 119 RTQTANTEQ 127


>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
 gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V  A    EA     +E +P+ +++D  M     +
Sbjct: 7   TVLVVEDEMAQREVLAYNLEADGFRVLRAGHGEEAL-LVVEEDMPDIIILDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ V  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPSTVGVRLE 136


>gi|254414953|ref|ZP_05028716.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178100|gb|EDX73101.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1317

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D +    K+      D GF V  A S  +  +  EK L P+ +++D  M  +  F 
Sbjct: 10  ILVIDDTPENLKLVSDFLRDAGFEVRIAKSGEQGLKLLEK-LNPDLILLDVMMPDMDGFE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDF---EKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              H++      D+ V ++   VD    E  + G   GA  ++ KP   + +   ++   
Sbjct: 69  ACRHLKAWEKTKDIPVIFMTAAVDTSNCEAKVKGLSLGAVDYISKPIQLDEVLARVKIHL 128

Query: 119 QMQ 121
            ++
Sbjct: 129 HLK 131


>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
 gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++ +       +++ EA    EA E    E   + +++D  M G   
Sbjct: 5   TKILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAF-ETDYDVILLDLMMPGKDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        V  L  + +    + G  AG + +++KPF+   +   ++ L +
Sbjct: 64  IEVCRELRER---KATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +  V +      GF V  A     A +    E   + +V+D  +  +   
Sbjct: 6   KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNEN-IHLIVLDLMLPKMTGE 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +     V +  L  + + ++ I G   GA+ +L KPF+   L   +R L + 
Sbjct: 65  EVCNRIRAVSS---VPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRR 121


>gi|313620820|gb|EFR92044.1| transcriptional regulatory protein WalR [Listeria innocua FSL
           S4-378]
          Length = 199

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L++D    +  +   +    G+ V +A        F E    P+ +++D  +     
Sbjct: 4   KKILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFES-FRPDLIILDIMLPDING 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    VR       + +  L  + D    I G   GA+ +L KPF+   L   ++ L +
Sbjct: 63  NEVCKMVRSNSS---IPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLR 119

Query: 120 MQKSKDEN 127
               KD N
Sbjct: 120 RTGLKDVN 127


>gi|254883604|ref|ZP_05256314.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254836397|gb|EET16706.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1446

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1247

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I   + G + ++ KPF+ + L+  +  L + 
Sbjct: 1248 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1307

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+A+
Sbjct: 1308 RKVLQSAFLSKYGAQPKKEPLEAV 1331


>gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
 gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella
           flavida DSM 17836]
          Length = 1400

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R+    L    G  V   T    A +    E  P+ ++ D  M G+   
Sbjct: 648 RVLIADDNADMREYLARLLRGAGHRVSAVTDGYAALDRARAET-PDLIISDVMMPGLDGL 706

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R       + V  L      E  I G  AGA+ +L+KPF+   L   ++   ++
Sbjct: 707 RLVADLRADGRTAGIPVLLLSARAGQEASIEGLEAGADDYLVKPFSAAELLARVQTNVKL 766

Query: 121 QKSKDENQF 129
            + ++++  
Sbjct: 767 VRLRNQHAR 775


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +       +G+ V    S     E  +    P  +++D  M G     
Sbjct: 7   VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSS-PAIVILDIMMPGKDGL- 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R +   ++V V  L  + +    I G   GA+ ++ KPFN   L   ++ + +  K 
Sbjct: 65  EVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG 124

Query: 124 KDEN 127
            + N
Sbjct: 125 PENN 128


>gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 237

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ +    D G+ +  A          E+    + L++D  + G+  
Sbjct: 5   KKILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGW-DALILDLMLPGIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 64  LEICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123

Query: 122 KSKDENQFLDA 132
           ++   N  +DA
Sbjct: 124 EAMSRNLRMDA 134


>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLV+  + + K+        G+ VF A    +A +  E+   P+ +++D  +    
Sbjct: 10  MEKILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERH-QPDVVLLDWMLPRLN 68

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  +RQ        V  L    +    + G   GA+ +L KPF+   L   +R L 
Sbjct: 69  GLEVLRRLRQSSA---TPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALL 125

Query: 119 QMQKS 123
           +  + 
Sbjct: 126 RRAEL 130


>gi|270295181|ref|ZP_06201382.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274428|gb|EFA20289.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1303

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD ++   K          + V +AT+   A    EKE   + +V D  M  +   
Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKED-IDLVVSDIMMPEMDGL 1111

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + ++     + + +  L  +   E  + G   GA+ ++ KPFN E L+  + ++ +M
Sbjct: 1112 ELCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIEM 1171

Query: 121  QKSKDE 126
               + E
Sbjct: 1172 NVKRQE 1177


>gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
 gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +    +      G+ VFEA +  EA E  +KE   + +++D  M  + 
Sbjct: 1   MYRILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKED-IHLVLMDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++   + ++V V  L  + +    + G   GA+ ++ KPFN   L+  ++   + 
Sbjct: 60  GITAMLKIREV-SNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRR 118


>gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 263

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R +        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 4   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 62

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 63  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 122

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 123 LRRTNRAQLN 132


>gi|160891726|ref|ZP_02072729.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492]
 gi|317478215|ref|ZP_07937381.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|156859133|gb|EDO52564.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492]
 gi|316905608|gb|EFV27396.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1303

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD ++   K          + V +AT+   A    EKE   + +V D  M  +   
Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKED-IDLVVSDIMMPEMDGL 1111

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + ++     + + +  L  +   E  + G   GA+ ++ KPFN E L+  + ++ +M
Sbjct: 1112 ELCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIEM 1171

Query: 121  QKSKDE 126
               + E
Sbjct: 1172 NVKRQE 1177


>gi|83721603|ref|YP_441449.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           E264]
 gi|83655428|gb|ABC39491.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           E264]
          Length = 259

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 19  MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 78  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 137

Query: 120 MQK 122
            ++
Sbjct: 138 RRR 140


>gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 224

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA  + EK+    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFK-FVLLDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    + +   + + +  +        ++ G + GA+ ++ KPF+ E L   +  + + 
Sbjct: 60  GWETC-KNIRSFSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEELLARIEAVLRR 118

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 119 TNEHEQIQ 126


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL D    +  + +  F+  G+ V  A +  EA +   K+  P+ +++D  M  + 
Sbjct: 1   MVKLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQS-PDLVILDVMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++ +   + V V  L  + D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 60  GF-ETLKLIRAKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118

Query: 121 QKSKDENQF 129
             +  E   
Sbjct: 119 AANDKEEDL 127


>gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
 gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
          Length = 389

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD       + + +    G+ +  AT   EA E  E E  P+ +++D  M  +   
Sbjct: 12  KILVVDDIATNVLLLKTILGKAGYRIVTATGGREALEKVESES-PDLILLDIMMPDMNGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  ++       + V +L    D E ++ G + GA+ ++ KPFN E L   +     +
Sbjct: 71  EVIERLKADERFCRIPVIFLSALHDSENIVKGFKMGASDYVSKPFNHEELITRVAHHMFI 130

Query: 121 QKSK----DENQFLDA 132
            +++     +N+ L  
Sbjct: 131 AEAQRVIVRQNEELQE 146


>gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
 gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
          Length = 228

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+V+    +R++     +   + V EA     A         P  +++D  M G   
Sbjct: 3   NKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKL--GEKPELILLDWMMPGRSG 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +  I ++++ P    + +  L      E  I G  AGA+ ++ KPF+ + L   +  + +
Sbjct: 60  IHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        GF V    +  +A     +E  P+ +V+D  +  +  F
Sbjct: 9   RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEE-PDIIVLDVMLPDMNGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    + +L  + D E  I G   G + ++ KPF+ + +   ++ + +   
Sbjct: 68  GVTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 127

Query: 123 SKDENQFLDA 132
             DE+  + A
Sbjct: 128 QADEDAVIRA 137


>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 225

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA E  E   +P+ ++ D  M  +  
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILE-HDVPDMIICDVMMPEMDG 78

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ    + + V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138

Query: 120 MQKSKDENQ 128
                 E+Q
Sbjct: 139 QTIRWKEHQ 147


>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 235

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A +    ++LP+ +++D  + G   +
Sbjct: 6   NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 65  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 124

Query: 121 QKSK 124
           +  +
Sbjct: 125 RAPQ 128


>gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
 gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
          Length = 245

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++    F++ G+ V    +V +  +      L N +V+D  + G    
Sbjct: 13  KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQ-MDRLLARELFNLVVLDLMLPGEDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 72  SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 130


>gi|315185413|gb|EFU19185.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta thermophila DSM 6578]
          Length = 431

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +    ++   +  +  ++V  A S  EA    EK    + +++D  M  +  F
Sbjct: 10  RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTP-FDLILLDIMMPEMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P   D+ + +L  + D E ++ G   G   +++KP++   L   ++    +
Sbjct: 68  EVCRRVRNNPKTRDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQLSL 127

Query: 121 QKSKDENQFLD 131
           ++ + + + L 
Sbjct: 128 REQQKKIEELS 138


>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis MSMB43]
          Length = 233

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A +    ++LP+ +++D  + G   +
Sbjct: 4   NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   +++++    + +  R+     G F V   T+         +   PN +++D ++  
Sbjct: 1   MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHP-PNLILLDINLPL 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R+      V +  L    D    I G   GA+ ++ KPF+   L   +  
Sbjct: 60  MNGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINA 119

Query: 117 LPQMQK 122
           + +  +
Sbjct: 120 VLRRTE 125


>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 241

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R++ +       F + EA++  EA     +      +++D  +  +
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDY-ACILLDLMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 60  DGIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118

Query: 120 MQKSKDENQ 128
             +S    Q
Sbjct: 119 RTQSSKPEQ 127


>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 231

 Score =  143 bits (363), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D      KV  H     GF V +A+   EA +    +  P+ +++D  M  V  
Sbjct: 5   RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQ-RPDLVILDVMMPKVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     + V +  L    D    + G R GA+ ++ KPF+   L   +  + +  
Sbjct: 64  FAVCGRIRAA-SAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM 122

Query: 122 KSKDENQFL 130
            +  E++ L
Sbjct: 123 PTLPESRTL 131


>gi|328951840|ref|YP_004369174.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109]
 gi|328452164|gb|AEB07993.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109]
          Length = 357

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD + + R +        G     A +  +A      E   + +++D  M  +    
Sbjct: 17  ILVVDDNRMNRLMLARGLEKQGHQAAFAENGRQALAML-AEQDFDLILLDIEMPEMNGYQ 75

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            + H+       D+ V  +    + + ++     GA  +L KPFN   L+  +    + +
Sbjct: 76  VLDHLAANVRWRDLPVIMISAVDEIDSVVRCIELGAEDYLTKPFNPVLLKARVDASLEKK 135

Query: 122 KSKDENQFL 130
           + +DE + L
Sbjct: 136 RLRDEQRAL 144


>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
 gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   NILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
 gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  G+ + EA +  EA +  +       +++D  M  +  
Sbjct: 3   TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHS-FQLIILDVMMPEMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + +  L    +    + G   GA+ +L KPF  E L   +  L +
Sbjct: 62  WEVCEEIRK--ENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|158333299|ref|YP_001514471.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
 gi|158303540|gb|ABW25157.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
          Length = 343

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       +      D GF V+ ATS   A +      LP+ +++D  M G+   
Sbjct: 9   NILIVDDVPTNLTILAQTLRDQGFTVWVATSGNAALKQL-AHGLPDLILLDIQMPGMNGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      D+ V ++    +    + G   GA  ++ KPF    +   ++    +
Sbjct: 68  ETCAKLKADLRTQDIPVIFMSALSEQANKVEGLSLGAVDYITKPFQEAEVLARVKVHLSI 127

Query: 121 QKSKDENQF 129
           ++     Q 
Sbjct: 128 RELTQNLQR 136


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ +V+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLI-ASDRPDAVVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L + 
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R+  +    + G  VFEA    +A     +E   + +++D  M  +  
Sbjct: 4   NNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDAL-MLLQEQEIHLILMDIMMPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  +      D+ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 63  IKATFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120


>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis TXDOH]
 gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis Bt4]
 gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
 gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
          Length = 233

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A +    ++LP+ +++D  + G   +
Sbjct: 4   NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
 gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Sphingobium chlorophenolicum L-1]
          Length = 722

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD +     V      D G  V  A    EA +  +  + P+ +++D  M G+  
Sbjct: 13  RTVLIVDDNPANLGVIVDHLEDAGLHVSVAQGGEEALKRAQF-IQPDLILLDVMMPGIDG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      ++ V ++    D    +A   AG   ++ KPF  E L   +    +
Sbjct: 72  FETCRRLKANEATREIPVIFMTALDDIHDKVAAFAAGGVDYVSKPFQVEELLARVITHLE 131

Query: 120 MQKSKDEN 127
           ++ ++   
Sbjct: 132 LRSARQRL 139


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA +  E+ + P+ +V+D  +  +  F
Sbjct: 12  SIVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIER-VHPDLIVMDVMLPDIDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 71  TVTRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 130

Query: 123 SKDEN 127
             DE+
Sbjct: 131 DPDED 135


>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
 gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V  A       +        + +++D  + GV 
Sbjct: 1   MSKILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGD-FDLVILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR      +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICRKVRAE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQK-----SKDENQFLD 131
              +     + +EN+ ++
Sbjct: 117 ARYERLIGSAVEENKVIE 134


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
          Length = 240

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 15  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 74  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131


>gi|150002960|ref|YP_001297704.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931384|gb|ABR38082.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1440

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1241

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I   + G + ++ KPF+ + L+  +  L + 
Sbjct: 1242 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1301

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+A+
Sbjct: 1302 RKVLQSAFLSKYGAQPKKEPLEAV 1325


>gi|186681390|ref|YP_001864586.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Nostoc punctiforme PCC 73102]
 gi|186463842|gb|ACC79643.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Nostoc punctiforme PCC 73102]
          Length = 409

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R     L    G+ V EA            +  P+ +++D  M G+  F
Sbjct: 96  KVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLV-TQKQPDLILLDVMMPGMDGF 154

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V ++    D    I G   GA+ FL KPF+R  L   ++ L + 
Sbjct: 155 EVCQLLKQDEQTRLIPVIFITALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKSLVRQ 214

Query: 121 QKSKDENQFLDAI 133
           ++  ++    + +
Sbjct: 215 KRLNEDLDHAEQV 227


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +    R   +  G+ V  A       E        + +V+D  + G+ 
Sbjct: 1   MTRILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTY-DLIVLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L         +AG  AGA+ +L+KPF  E L   +R   + 
Sbjct: 60  GLEVA-RRLRADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRR 118

Query: 121 QKSKDENQFL 130
           ++S      L
Sbjct: 119 RQSGQAQDVL 128


>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      G+ V+ A +  EA +       P+ +++D +M+G+   
Sbjct: 6   KILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKL--SYSPDIVLLDINMDGMNGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         + +L   V  +  I G  AG + ++ KPF+   L   +    + 
Sbjct: 64  DLCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRR 120

Query: 121 QK 122
           ++
Sbjct: 121 EQ 122


>gi|313145398|ref|ZP_07807591.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
 gi|313134165|gb|EFR51525.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
          Length = 1361

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+++ +  VR+  R LF    + V EA    E  +   KE +P+ ++ D  M     
Sbjct: 1113 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKE-IPDLIISDVMMPVKDG 1170

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L    +   ++ G+R+GA+ +++KPFN E L+  +  L  
Sbjct: 1171 FACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLIL 1230

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1231 QRERLKR 1237


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLVD +  +R     L       V  AT+  +A E    +  P+ ++ D  M G+  F
Sbjct: 1657 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQP-PDLVLADVMMPGLDGF 1715

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R       + +  L      E  + G ++GA+ +L+KPF+   L   +R    M
Sbjct: 1716 GLVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDM 1775

Query: 121  QKSKDE 126
             + + E
Sbjct: 1776 ARVRRE 1781



 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LL D +  +R     L +   + V   +    A         P+ ++ D  M G   L
Sbjct: 642 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANP-PSLIISDVMMPGVNGL 699

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R       + +  L      E  I G  +GA+ +L+KPF+ + L   +  L  +
Sbjct: 700 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 759

Query: 121 QKSKD 125
            + + 
Sbjct: 760 SQLRQ 764


>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 223

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +   +  GF V EA++  EA +   ++     +++D  M  +   
Sbjct: 5   KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  ETCKTIRK---YSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKS 123
             +
Sbjct: 122 SNA 124


>gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +      + GF   EA    EA     +  + + +++D  M     
Sbjct: 4   RTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPV-DAVLLDVMMPKQDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     +DV + +L    +    + G + G + +++KPF+   L   +  + +  
Sbjct: 63  FAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRV 121

Query: 122 KSKDEN 127
           +   EN
Sbjct: 122 QRVREN 127


>gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
           M21/2]
          Length = 231

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
             +L+VD    + ++ + +F   GF  +  A+S   A + CE++  P+ +++D  M G+ 
Sbjct: 4   KRILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQE-PDMMILDVMMPGMD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A ++++   + + V  L    + E    G   GA+ +LLKPF  + L F ++ + + 
Sbjct: 63  GF-AALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKR 121

Query: 121 QKSKDENQ 128
              + E +
Sbjct: 122 VYPEKERK 129


>gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++ R    + G+ V    +  E     EK   P+ +++D  + G   
Sbjct: 10  QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNT-PDLIILDLMLPGIGG 68

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +++      + +  +  +    + + G   GA+ ++ KPF+   L   +R + +
Sbjct: 69  MDLCKKIKEKYS---MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125

Query: 120 MQKSKDENQF 129
             K ++E++F
Sbjct: 126 RIKDEEEDEF 135


>gi|167037177|ref|YP_001664755.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|166856011|gb|ABY94419.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 318

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD + + RK+ + +  + G+ V EA    EA +   +  LP+ +++D  M G+  
Sbjct: 12  RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-RNKLPDMVILDIVMPGMNG 70

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  +  +R+      + +  L  + +FE+ I G   GA+ +L+KPFN + L F +  L Q
Sbjct: 71  FDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNLFQ 130

Query: 120 MQK 122
             +
Sbjct: 131 RIE 133


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + +V +      G+          A E    E  P+ +++D  +  +   
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYETKVVNDGKTA-ETMFLEYKPDLVLLDIMLPNIDGI 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V  L  + +    + G   GA+ +++KPF  + +   ++ + + 
Sbjct: 66  DVLKWIRKEYE---TPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRR 122

Query: 121 QKSKDENQ 128
               +EN+
Sbjct: 123 YSVDNENK 130


>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    VR+         G  V  A +  +      +E  P+ +V+D  + G+ 
Sbjct: 1   MAVVLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKL-RERAPDLVVLDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +     V +  L    D   ++AG  AGA+ +++KP     L   +R + 
Sbjct: 60  GFETCRRIRALG---QVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVL 116

Query: 119 QMQKSK 124
           +   ++
Sbjct: 117 RRTAAE 122


>gi|87121149|ref|ZP_01077040.1| Response regulator [Marinomonas sp. MED121]
 gi|86163641|gb|EAQ64915.1| Response regulator [Marinomonas sp. MED121]
          Length = 264

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++ +VD    +R + +       F V  A S        E++   + +++D  + G   
Sbjct: 5   KTVFVVDDDAEIRNLLKTYLEKHQFNVRTADSGESFLADFEQDSAADLIILDIMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R   L   V V  L    D    I G   GA+ +L KPFN   L   M+ + +
Sbjct: 65  FSVCRSLRMKSL---VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAIFR 121

Query: 120 MQKSKDENQ 128
             +    +Q
Sbjct: 122 RIEQIALSQ 130


>gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 228

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    + ++ R      GF V       EA +    +  P+ +++D  +  + 
Sbjct: 1   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSF-TQRKPSLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QM--QKSKDENQFL 130
           +   +K++ E+Q L
Sbjct: 117 RRLERKAEPEDQSL 130


>gi|284037861|ref|YP_003387791.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283817154|gb|ADB38992.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1311

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            M  +L+V+ +  +R    +  +   + V  A +  E  E    E LP+ ++ D  M  + 
Sbjct: 1064 MPLILVVEDNIELRDFIANELSQS-YRVLTARNGQEGWEQVRSE-LPDVVISDIMMPDLD 1121

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   ++   L   + V  L      E  + G   GA+ +L KPF+   L+  +  L 
Sbjct: 1122 GYALTRQLKTNTLTNHIAVILLTARASQESRMNGLMQGADDYLTKPFSISELKQRICNLL 1181

Query: 119  QMQKSKD 125
              Q++  
Sbjct: 1182 TRQQALR 1188


>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 237

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    +R+          F V EA S  EA     K   P+ +V+D  + 
Sbjct: 1   MKGQERILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTR-SKTFRPHLMVLDIMLP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           G+       R       + V  L         + G   GA+ +++KPFN   L   +R +
Sbjct: 60  GMDGLEVCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAV 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E       P+ L++D  +    
Sbjct: 2   MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 60  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 117

Query: 119 QMQKSKD 125
           +  + ++
Sbjct: 118 RRVRKEE 124


>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 262

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    ++ +      + GF V    S  E       +   + LV+D  + G    
Sbjct: 16  RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R  P      V  L    +    I G   GA+ ++ KPFN   L   +R + + Q+
Sbjct: 76  SIARRLDPKTR-PPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134

Query: 123 SKDENQ 128
            + + +
Sbjct: 135 MEPDAR 140


>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 226

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ R    + GF V EA    EA +    +     +++D  M  +  +
Sbjct: 5   KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   + V V  L    +    + G   G + ++ KPF+ + L   +  + +   
Sbjct: 65  -EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123


>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 229

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V +A +  EA     +E +P+ +V+D  M     +
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEAL-LLVEEDMPDIIVLDWMMPNLTGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EICRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPATVGMRLE 136


>gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 235

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    +R+  R      G     A++  EA +  +     + +++D  M  
Sbjct: 1   MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNE-IHLILMDVMMPK 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +      + +R+    ++V +  L  + +    I G   GA+ ++ KPFN   L   ++ 
Sbjct: 60  MDGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKS 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|256829806|ref|YP_003158534.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578982|gb|ACU90118.1| response regulator receiver modulated diguanylate cyclase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 310

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD   +  +    +  D    +  AT+   A E    E  P+ +++D  M G+  
Sbjct: 8   NTILIVDDEPVNIRALEIVLGDE-HDLTYATTGEMALEMARAEPQPDLILMDIVMPGLDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F   A +++     ++ V +L  + +  +   G   GA  ++ KPF+   +R  +R   +
Sbjct: 67  FEVCAELKKDDKTRNIPVVFLTAKWETSEEAKGLELGAVDYIRKPFSPPIIRARIRNHLE 126

Query: 120 MQKSKDENQFLDAI 133
           +++++D  + L  +
Sbjct: 127 LKRNRDLLENLSTL 140


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +  +     GF V  A    EA E    E  P  +++D  +  +  
Sbjct: 3   KKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFE-QPALIILDLMLPKLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  L    D    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 62  VEVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121

Query: 122 KSKD 125
               
Sbjct: 122 DLAQ 125


>gi|284052602|ref|ZP_06382812.1| response regulator receiver modulated serine phosphatase
           [Arthrospira platensis str. Paraca]
          Length = 374

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L++D   I+R++ +      G+ V  A++  E  E   KEL P  ++ D  M     +E 
Sbjct: 1   LVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKA-KELRPALMICDWIMPRLTGIEV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+ MP  +    + L      +  + G  AGA+ FL KP     L   +R   ++ +
Sbjct: 60  CRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLRLHQ 119

Query: 123 ----SKDENQFLD 131
                + + Q L+
Sbjct: 120 LSQDLQTQKQLLE 132


>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 232

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   S+L+ D    +  +        G+ V +A    EA    + +   + +V+D  M  
Sbjct: 1   MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 239

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF+V    +  +A +        + +V+D  + G    
Sbjct: 6   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQA-DRLLTRENFSLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + V  L  + D    I G   GA+ +L KPFN   L   +R + +  
Sbjct: 65  SICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRH 123


>gi|94263702|ref|ZP_01287510.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455901|gb|EAT06060.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 407

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD   I   + +       + +  A +  +A +  +    P+ +++D  M G+   
Sbjct: 9   TILVVDDVAINIMIIKGALKSE-WNLLTAENGKQALDLAQGTPRPDLILLDIMMPGMDGH 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V ++    D      G + GA  ++ KP   E LR  +R   ++
Sbjct: 68  EVCRQLKADPETRGIPVIFVTAMGDAVSEEQGLQLGAIDYISKPIKPEILRVRVRNHIKL 127

Query: 121 QKSKDENQ 128
           ++ +   +
Sbjct: 128 KRYQSALE 135


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR+  R      G+ V  A    EA E    E  P  L++D  M  + 
Sbjct: 1   MK-ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAEN-PELLILDVMMPNMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLR--SEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLV 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRASA 121


>gi|218439149|ref|YP_002377478.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171877|gb|ACK70610.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 384

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +    ++   + +  G+ V +A +   A       + P+ +++D +M  +   
Sbjct: 7   NILVVDDTPDNLRLLAAMLSKKGYTVRKALNGQIAIATVHS-VPPDIILLDINMPNMNGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                ++      D+ + ++    D    +     G   ++ KPF  E +   +      
Sbjct: 66  QVCQTLKADEQTKDIPIIFISALDDVIDKVKAFNMGGVDYITKPFQGEEVIARIENQLTI 125

Query: 120 -MQKSKDENQFLD 131
             QK + + + LD
Sbjct: 126 CRQKKQLQQEILD 138


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R + +      GF   EA    +A E C KE   + +++D  M  + 
Sbjct: 1   MSRLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKES-FDLIIMDVMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + VR++   +   V  L    +    I G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GF-SAVREIRKTSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKR 118

Query: 121 QKSKDENQ 128
               +  +
Sbjct: 119 SGGGEAQR 126


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  IEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K + E
Sbjct: 122 KGEQE 126


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    VR+      +  G+ V  A    EA E  E+E  P  +++D  M  + 
Sbjct: 1   MK-IVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIERE-QPELVILDVMMPRMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLR--GSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116

Query: 119 QMQKSKD 125
           +   ++ 
Sbjct: 117 RRAAAES 123


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|255007701|ref|ZP_05279827.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 1362

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+++ +  VR+  R LF    + V EA    E  +   KE +P+ ++ D  M     
Sbjct: 1114 KTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKE-IPDLIISDVMMPVKDG 1171

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L    +   ++ G+R+GA+ +++KPFN E L+  +  L  
Sbjct: 1172 FACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLIL 1231

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1232 QRERLKR 1238


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score =  143 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       + V  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    + ++ R      GF V    +  +A E   K   PN +V+D  + G   
Sbjct: 5   TKVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAF-KTFAPNIVVLDIMLPGADG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ+   +++ +  L  + +    + G   GA+ +++KPF  + L   ++ + +
Sbjct: 64  WQVCREIRQV---SNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLR 120

Query: 120 MQKSKD 125
             + K+
Sbjct: 121 RYEHKE 126


>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 225

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA E  E E +P+ ++ D  M  +  
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHE-VPDMIICDVMMPEMDG 78

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ    + + V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138

Query: 120 MQKSKDENQ 128
                 E+Q
Sbjct: 139 QTIRWKEHQ 147


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    E +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQS-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 11/132 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-------KELLPNYLVID 53
           M  +LLV+    +R+         G+ V  A     A +  +       +    + +++D
Sbjct: 1   MGQILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILD 60

Query: 54  ESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
             + G   ++    +R+   G+ V V  L  +      + G   GA+ +L KPF    L 
Sbjct: 61  IMLPGINGIDLCRFIRR--EGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELI 118

Query: 112 FAMRELPQMQKS 123
              R L + Q+ 
Sbjct: 119 ARCRALLRRQRL 130


>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. 16M]
 gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
 gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
           melitensis bv. 1 str. 16M]
 gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
          Length = 255

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 33  RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 91

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 92  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151


>gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 239

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R   R      GF   EA S  EA E  E+       ++D  + G+ 
Sbjct: 1   MQKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGID 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++       + +  L  +      ++G   GA+ +++KPF+ + L   +  L 
Sbjct: 61  GFEVCRILK--ERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALI 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++ +  + ++ R  F + G  V  A       +        + +++D  +  +  F
Sbjct: 2   RLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKY-DCVILDIMLPEMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G DV V  L  +   E  + G   GA+ +L KPF+ + L   +  L +   
Sbjct: 61  EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120

Query: 123 SKDE 126
            +  
Sbjct: 121 DQRR 124


>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 233

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+++    + ++        G     A +  +A      ++LP+ +++D  + G   +
Sbjct: 4   SILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  SFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|189463997|ref|ZP_03012782.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM
            17393]
 gi|189438570|gb|EDV07555.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM
            17393]
          Length = 1329

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+     F+   + +  AT+  E  E   K  +P+ ++ D  M  +    
Sbjct: 1076 ILIVEDNDDIREYIATSFS-NNYHIMTATNGKEGIEQALK-YIPDIIISDIMMPVMDGIE 1133

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1134 LCKLIKEDVRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLHSRVHNLLESR 1193

Query: 122  KSKD 125
            K   
Sbjct: 1194 KKLA 1197


>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 233

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A +    ++LP+ +++D  + G   +
Sbjct: 4   NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQA-QSLISDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD +   RK+        G+ V E      A E   KE LP  +++D  M  + 
Sbjct: 572 MSKILVVDDNLNTRKMLCRHLTKSGYEVSETDRGKIALEKI-KEELPEVILLDVMMPDMT 630

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+ P    +++  L    D +  I G   GA+ ++ KPF+   L   +R + 
Sbjct: 631 GFEVCQQLRKTPQYELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFDISELLARIR-VG 689

Query: 119 QMQKSKDENQFLDAI 133
           +    K     +D +
Sbjct: 690 ERTAIKKREATIDGL 704


>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    ++ +        G+    A    EA    +     + +++D  M  + 
Sbjct: 1   MAKILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNN-IDLMILDIMMPYLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R     T++ +  L  + + E  + G   GA+ ++ KPF+ + L   +  L + 
Sbjct: 60  GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118


>gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118]
 gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    +R + R      GF V +A                + +V+D  M G    
Sbjct: 10  KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKS-LTRLLVREPVDLIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + + 
Sbjct: 69  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128

Query: 123 SKD 125
           +++
Sbjct: 129 TQE 131


>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
 gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
          Length = 236

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 61/132 (46%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  + G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQ-RPALILLDWMLPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++    +++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             + + ++ +DA
Sbjct: 125 ANALNGDKVIDA 136


>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
 gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding [Nitrosomonas
           europaea ATCC 19718]
          Length = 240

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 60/131 (45%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    ++++  +   + G+      S  +A      E+LP+ +++D  + G   +
Sbjct: 4   TVLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQA-AAMVNEVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+ P    + V  L   VD    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  ELARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRR 122

Query: 121 QKSKDENQFLD 131
              +  ++ LD
Sbjct: 123 SLPEASDEILD 133


>gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
 gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
          Length = 1314

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD S  +R+   + F D  + +  A    EA    ++    + ++ D  M  +    F
Sbjct: 1066 LIVDDSEDMRQFLENNFKDK-YHIITAGDGIEALHLLQQH-QVSIIISDWMMPRMDGAEF 1123

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               VRQ PL + +    L  + D    + G   GA++++ KPF+ + L   +R + Q+++
Sbjct: 1124 CRRVRQNPLTSHIPFVMLTAKTDDNSKVKGMDVGADAYIEKPFSVQYLEACIRNILQIRR 1183

Query: 123  SKDE 126
               E
Sbjct: 1184 QLME 1187


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR+  R      G+ V  A    EA E    E  P  L++D  M  + 
Sbjct: 1   MK-ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAEN-PELLILDVMMPNMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLR--SEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLV 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRASA 121


>gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 236

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  E E  P  +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDE-QPELIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
             K   E +
Sbjct: 120 RSKFVSEIE 128


>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 225

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +  +        G+    A           +   P+ +++D  + G++
Sbjct: 1   MPTVLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARR-CKPDLILLDLMLPGMM 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++   L   + V  L    +    + G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GTEVCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVL 119

Query: 119 QMQ 121
           + +
Sbjct: 120 RRK 122


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       +A     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRM-KERIPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFLD 131
              +     L 
Sbjct: 123 AAPERLATVLA 133


>gi|294776315|ref|ZP_06741797.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294449832|gb|EFG18350.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1329

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+    +R+   H  ++  + V   T+  EA +    E  P+ ++ D  M  +  
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++   L + + V  L    D + ++ G   GA+ +L+KPFN   L+ ++  +  
Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188

Query: 120  MQKSKD 125
             +    
Sbjct: 1189 NRALLR 1194


>gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 230

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R+         G+ V EA S  EA         P+ +++D  +  +  
Sbjct: 6   KTILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHG-PDVILLDLGLPDMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +P+     V  L +       +     GA+ +L KPF+   L   +R   + 
Sbjct: 65  -EELLRTLPVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRR 122


>gi|254885151|ref|ZP_05257861.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319641338|ref|ZP_07996033.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837944|gb|EET18253.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387019|gb|EFV67903.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1329

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+    +R+   H  ++  + V   T+  EA +    E  P+ ++ D  M  +  
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++   L + + V  L    D + ++ G   GA+ +L+KPFN   L+ ++  +  
Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188

Query: 120  MQKSKD 125
             +    
Sbjct: 1189 NRALLR 1194


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A+S  +  +       P+ +V+D  M G+  F
Sbjct: 9   RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVART-FRPDAIVLDVMMPGMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D  V +L  +   +  I+G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 68  GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125


>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 117 RRTNQRTQIQ 126


>gi|150006322|ref|YP_001301066.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149934746|gb|ABR41444.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1329

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+    +R+   H  ++  + V   T+  EA +    E  P+ ++ D  M  +  
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++   L + + V  L    D + ++ G   GA+ +L+KPFN   L+ ++  +  
Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188

Query: 120  MQKSKD 125
             +    
Sbjct: 1189 NRALLR 1194


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA     K+   + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAL-VFAKQKEYDVILLDVMLPRMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +++ V  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQQIRE---FSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 238

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD    +R++ +      G++V EA +  +A      E   + +++D  M     L
Sbjct: 6   SVLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMAL-EKDYHCILLDIMMPEKDGL 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R+        +  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCAELREK---KTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 121


>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
 gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 225

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++     R     + +  GF V  A    +     ++    + +++D  M G  
Sbjct: 1   MSRILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGA-DLVLLDLMMPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +RQ    +DV V  +         + G   GA+ ++ KPF++  L   +R + 
Sbjct: 60  GIEVCKALRQR---SDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVL 116

Query: 119 QMQKSKD 125
           +  ++++
Sbjct: 117 RRGRAEE 123


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A    EA     ++  P+ +++D  +  +   
Sbjct: 22  RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEAL-RAARDFRPDAVILDVMLPDMDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      DV V +L      E  IAG  AG + ++ KPF+ E +   +R L + 
Sbjct: 81  TVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 138


>gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278]
 gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response
           regulator receiver domains) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  EA + C++    + +++D  M  +  F
Sbjct: 4   RILVVDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAEC-DIILLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61
            +LLVD      +    +       V       EA     +       + +D      L 
Sbjct: 157 RILLVDDRPSSYERLGPMLATE-HSVDVEPHPAEAVFNAADGNYDLVIVSLDLDDFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + +R +     V +  +  E +    +  G   G N +LL+P ++  L    R   + 
Sbjct: 216 LCSQLRSLERTRHVPILAI-AEAENNSRLLRGLEIGVNDYLLRPVDKNELLARARTQIRK 274

Query: 121 QKSKDENQ 128
           ++  D  +
Sbjct: 275 RRYTDHLR 282


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L VD    VR+  R   +  G+ V  A    EA E   ++  P+ LV+D  M  +   
Sbjct: 27  RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARD-RPDALVLDVMMPRLDGL 85

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   +R L +  K
Sbjct: 86  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 145

Query: 123 SKDENQ 128
             D  +
Sbjct: 146 PDDAAE 151


>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  143 bits (362), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +     + FG           A +    E   + +V+D  + G   
Sbjct: 6   TRILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGA-AMKKALTESSFDLVVLDLMLPGEDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R +   +D+ V  L    D    + G   GA+ ++ KPF    L   ++ + +  
Sbjct: 65  LTLC-RSLRGESDIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRA 123

Query: 122 KSKDENQ 128
           + + E +
Sbjct: 124 RHEREPE 130


>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 239

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L  D    + ++         + V  A+   +A    EK+ LP+ +++D  M  V  F 
Sbjct: 8   ILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQ-LPDLILLDVMMPRVDGFT 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H+R+    + V +  +         + G   GA+ +L KPF+ E L   +R + +  
Sbjct: 67  VCKHIRE---FSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRS 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 223

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + R      G+ V EA    +A +  ++    + +++D  M  + 
Sbjct: 1   MKKILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENSDYDVIIMDVMMPELD 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F   + ++++    D+ V  L    +    I G  AG + +++KPF+ + L   +  + 
Sbjct: 61  GFSACSEIKKI---KDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVNVVT 117

Query: 119 QMQKSKD 125
              K + 
Sbjct: 118 SRSKPEA 124


>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 230

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  R      G  V  A    EA E  +K    + +++D  +    
Sbjct: 1   MPRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEY-DIVLLDVMLPKLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +D+ +  L  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GYEVCQAIRE---FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAII 116

Query: 119 QMQKSKDENQFLDA 132
           +        +  +A
Sbjct: 117 RRSSKNKRLKKEEA 130


>gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
 gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
          Length = 236

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  E+E  P  +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEE-QPELIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
             K  +E +
Sbjct: 120 RSKFVNEIE 128


>gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 260

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R +        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 60  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 120 LRRTNRAQLN 129


>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 232

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    VR+         G+ V       EA         P+ +++D  M  +    
Sbjct: 5   ILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHL-SGSHPDAVIMDVMMPRLDGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A       G DV +  L      +  + G  AGA+ +++KPF  + L   +R L +  + 
Sbjct: 64  ATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSRP 123

Query: 124 K 124
           +
Sbjct: 124 E 124


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRVR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D  V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
 gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
          Length = 255

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 33  RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 91

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 92  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD   ++ K  +         V  A    EA     KE   + +++D  +    
Sbjct: 1   MKKVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLA-KENQYDIILLDVMLPKLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    + V +  L  + D    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GYEVCQAIRE---FSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium
           gilvum PYR-GCK]
 gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum
           PYR-GCK]
          Length = 1361

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R+    L    G+ V       +A E    E  P+ ++ D  M     L
Sbjct: 605 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGWQALEAIRAEP-PDLVISDVMMPRLDGL 663

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R       V V  L      E  I+G +AGA+ +L+KPF    L   +R   Q+
Sbjct: 664 GLVAELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRANIQL 723

Query: 121 QKSKD 125
            + ++
Sbjct: 724 ARLRE 728


>gi|119485362|ref|ZP_01619690.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457118|gb|EAW38244.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 372

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L VD       + +      G  V        A E  E    PN +++D  M  +    
Sbjct: 12  ILAVDDLPDNLFLLKLALEQEGHNVVLVEDGKTALEQIEASP-PNLVLLDVMMPEMDGYE 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +    +   ++ G  AGA+ F+ KP   + L+  +R L +++
Sbjct: 71  VTKRIRSNPKYPYIPILLITAH-EQSSVVEGLDAGADDFIRKPVQIDELQARVRSLLRLK 129

Query: 122 KSKDENQ 128
           +S D+ +
Sbjct: 130 QSIDQRE 136


>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 238

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL +    +R          GF V EA++  EA    ++E  P+ L++D  M  +  
Sbjct: 6   KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQE-APHLLILDVMMPRMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VRQ    + V +  L         +A    GA+ +L KPF  E L   +R   +
Sbjct: 65  LEVCQRVRQS---STVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALR 121

Query: 120 MQKSKD 125
               ++
Sbjct: 122 RTNWEE 127


>gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 247

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+         G+ V  A    EA +   ++  P+ +V+D  M  V   
Sbjct: 2   RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRD-RPDIVVLDVMMPRVDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            A  R    G D+ V  L         ++G   GA+ +L+KPF  E L   +R L
Sbjct: 61  EACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|307153766|ref|YP_003889150.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306983994|gb|ADN15875.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 374

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S     + + +  + G  V  A     A     +E LP  +++D  M  +  F 
Sbjct: 15  ILVVDDSPDNLFLIQTILEEQGLKVVLAQDGLAALNRI-QESLPKLILLDVMMPKMDGFE 73

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  +         + G  AGA+ F+ KP + + L   +R L +++
Sbjct: 74  VTRRIRANENLPFIPILLITAYDQPS-AVKGLDAGADDFIRKPVDVDELLARVRSLLRLK 132

Query: 122 KSKDENQFL 130
            S D+ + +
Sbjct: 133 HSVDKQEQM 141


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +  ++  ++A
Sbjct: 124 DALAKDSRIEA 134


>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 226

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +  + +    D GF      +  +   + +   + + +++D  + G    
Sbjct: 5   TILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPV-DLILLDIMLPGKDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR +   + V +  L  +V+    I G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 64  QVCKEVRTI---SQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRR 120

Query: 121 QKSKDEN 127
              + EN
Sbjct: 121 SSLRQEN 127


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       EA     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRL-KERVPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +     N+ GF V +A +  EA E   K+     +++D  M  +  
Sbjct: 4   RTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEIL-KDTEVQLVLLDIMMPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      +  +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 63  ITTCMKIRED-KNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRR 120


>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 244

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R + R   +  GF V  A     A          + +V+D  + G    
Sbjct: 11  RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAK-ALNRVLTRDTVDLIVLDLMLPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  +V+    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 70  SICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRR 128


>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++++ R      GF V    SV +A E   ++ +P+ +V+D  + G    
Sbjct: 12  RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHL-RDPMPHLIVLDWMLPGESGV 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      + +  L    +    + G  +GA+ +L KPF+   L   ++ L + 
Sbjct: 71  AWCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRR 130


>gi|256396664|ref|YP_003118228.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362890|gb|ACU76387.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 273

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+L+V+    + +         GF    A     A     +E LP+ +V+D  + G  
Sbjct: 1   MTSILVVEDEPTLAEAIAARLRAEGFATHLAGDGPAAVRTA-QEHLPDLIVLDVMLPGFD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++       V V  +    D   +I G R GA+ +L KPF+   L   +  L 
Sbjct: 60  GLEVCRRIQAE---RAVPVLMVTARDDESDLIEGLRTGADDYLTKPFSMRELIARVHALL 116

Query: 119 QMQKSKDEN 127
           +  +   E 
Sbjct: 117 RRVERAAEL 125


>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
 gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
          Length = 225

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFK-FVLLDIMMPTMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 117 RRTNQRTQIQ 126


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++D    + ++        G+ V +A    EA +  E   + +  ++D  + G+  
Sbjct: 4   KNILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDV-DMFIVDIMLPGMDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    ++R         V +L  + +    + G   GA+ ++ KPF+       +R + +
Sbjct: 63  FELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFR 122

Query: 120 MQKS 123
             + 
Sbjct: 123 RIQQ 126


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +       V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    GF    A +  EA E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QMQKSKDEN--QFLDA 132
           +     +E   Q L+A
Sbjct: 117 RRGGESEELLPQVLEA 132


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +    R      G+ V  A    +A E   +E  P+ +V+D  + G+ 
Sbjct: 1   MSAILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIA-RERPPDLVVLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   +DV +  L         +AG  AGA+ +L+KPF  E L   +R   + 
Sbjct: 60  GLEVA-RRLRAASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118

Query: 121 QKSKDENQFL 130
           ++ +D    L
Sbjct: 119 RQREDTATVL 128


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++   +  + V  A     A +   ++   + +++D  + G+ 
Sbjct: 1   MTKILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQ-QFDAILLDLMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                           V  +  + D    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GMTVLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 SQ 121


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + +      G++ FEA+   E  E        + +++D  M G  
Sbjct: 1   MQKILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKL-TNHSFDLILLDVMMPGKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++    +  V  +    +    + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 60  GF-QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKR 118


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    + ++    F    F V       EA     +E +P+ +++D  +E    +
Sbjct: 5   RMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEAL-LLAQETVPDIVLLDWMVESLSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R++    +V +  L    + E  + G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123

Query: 121 QKSKDENQFL 130
            +     + L
Sbjct: 124 VRPALAGETL 133


>gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 498

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      +    +  D G+ V  A S             PN +++D  M  +   
Sbjct: 10  KILIVDDQPSNLRFLSKILTDQGYNVKRAISGQLGLNAALGSP-PNLILLDIMMPDMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ M     V + +L    D +  I   + G   ++ KPF  E +   +     +
Sbjct: 69  ELCQKLKSMESTRSVPIIFLSGLDDVQYKIKAFQVGGVDYITKPFQVEEVLARIDTQIAL 128

Query: 121 QKSKDENQFLDAI 133
           QK +++ +  +A+
Sbjct: 129 QKLQNKLEEQNAL 141


>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
 gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R++     N  GF + EA++  EA +  E E   +  +ID  M  +
Sbjct: 1   MKPRVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENE-YVDLGIIDVMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   V  +    D+ V  L  + + +  + G   G + +++KPF+   L   ++ + +
Sbjct: 60  DGF-ELVENLKEFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|126659636|ref|ZP_01730766.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126619082|gb|EAZ89821.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 377

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD +    ++   + ++ G+ V +A +   A      ++  + +++D +M  +   
Sbjct: 7   NILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTI-HQVPADLILLDINMPSMNGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P+  D+ + ++    D    +     G   ++ KPF  E +   +     +
Sbjct: 66  EVCQQLKNDPITQDIPIIFISALDDVLDKVKAFDLGGVDYITKPFQAEEVIARIENQLTI 125

Query: 121 QKSKDENQF 129
           Q+ K + Q 
Sbjct: 126 QRQKKQLQQ 134


>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
 gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPTMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|260431985|ref|ZP_05785956.1| response regulator [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415813|gb|EEX09072.1| response regulator [Silicibacter lacuscaerulensis ITI-1157]
          Length = 421

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA S  EA + C ++ LP+ ++ D  M G+  
Sbjct: 17  QKVLVVDDSRLQRRILVASLKRWGFTVVEADSGEEALDLC-RQGLPDLVLSDWVMPGMGG 75

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R+M      +   L  + + +++  G  AGA+ FL+KP   + LR  +     
Sbjct: 76  LEFCRAFREMEKDQYTYFILLTSKSEKQEVARGLDAGADDFLIKPLEADELRARISAGAR 135

Query: 117 LPQMQKSKDENQFL 130
           +  MQ+   E   L
Sbjct: 136 ILGMQRELSEKNRL 149


>gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 260

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R +        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 60  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 120 LRRTNRAQLN 129


>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
 gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
          Length = 236

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + K+  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K + E
Sbjct: 122 KGEQE 126


>gi|150025574|ref|YP_001296400.1| two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772115|emb|CAL43591.1| Two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
          Length = 229

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +       V +     + + +  A    EA     +    +  V D  M  + 
Sbjct: 1   MKKVLLAEDDFDFADVLKQYLELYNYHITWAKDGEEAL-LLFENETFDICVFDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + + +  +    +L      E  + G + GA+ +++KPF  + L   +  + + 
Sbjct: 60  GFTLAQKIIDMNPETPFVFLTARKLKEDKLKGLQLGADDYIVKPFEADELVLRLNNILKR 119

Query: 121 QKSKDE 126
            + K++
Sbjct: 120 GEQKNQ 125


>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
 gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    ++ +        G+    A    EA    +     + +++D  M  + 
Sbjct: 1   MAKILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNN-IDLMILDIMMPYLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R     T++ +  L  + + E  + G   GA+ ++ KPF+ + L   +  L + 
Sbjct: 60  GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118


>gi|86607232|ref|YP_475995.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555774|gb|ABD00732.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 332

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE---KELLPNYLVIDESMEG-- 58
           + ++D   + R+    +     + V    S   A E  +   +   P+ ++ D  M G  
Sbjct: 8   IWVIDDDPVNRRYIGEVLKSSNYRVESWESGQLAWEHLQTLDESEWPDLIICDWVMPGLS 67

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    ++ +P G  ++   L    + E  + G  AGA+ F+ KP + E LR  +R   
Sbjct: 68  GVELCRRLKNLPAGQFIYFILLTARSEVEDRVQGLDAGADEFIAKPIDPEELRARVRAGL 127

Query: 119 QMQK-----------SKDENQFLDAI 133
           ++Q+            +  N+ L+++
Sbjct: 128 RLQRLTQALAQANRQLRARNELLESL 153


>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
 gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
          Length = 249

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LL+VD  + +RK+ +      G+ V  A +  EA +        + +++D  M       
Sbjct: 14  LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHS-IDLIILDVMMPKLDGYG 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    +D+ +  L    D    + G   GA+ +++KPF+   L   ++ + +  
Sbjct: 73  VCQEIRKE---SDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRI 129

Query: 122 KSKD 125
           ++++
Sbjct: 130 QTRN 133


>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +R++   +  D GF V EA +  +A E   +E   +  V+D  M  + 
Sbjct: 1   MNKILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEK-IDLCVLDIMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +      D+ +  L  + +  + + G   G + +L KPF  + L   ++ L + 
Sbjct: 60  GYEFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      DV +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
 gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
          Length = 244

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA +   +      +++D  +  +    
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNY-ACILLDLMLPEMDGIQ 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +         +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 67  VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125


>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA +   +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|218778183|ref|YP_002429501.1| response regulator receiver modulated serine phosphatase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759567|gb|ACL02033.1| response regulator receiver modulated serine phosphatase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 445

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    V+   + L + +G+ V  A    +A E  +    P   VID  M G+ 
Sbjct: 44  MK-ILVADDDRTVQIALKTLLSKWGYEVVTAQDGAQAWEILQDPKAPRLAVIDWMMPGME 102

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ  L +  ++  L  +    +++ G  AGA+ F+ KPFN   L+  +    
Sbjct: 103 GPALCKKIRQSSLSSYTYLILLTAKTSKSELMEGLEAGADDFISKPFNAGELKARITAAE 162

Query: 119 QMQKSKDENQ 128
           ++   + E +
Sbjct: 163 RILSLEKELK 172


>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
 gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
          Length = 233

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  + R+     G+ V       EA E   +E LP+ L++D  + G  
Sbjct: 1   MPKVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEA-EIRLRESLPDLLLLDWMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       + V  L    +  + I G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GIELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|94264856|ref|ZP_01288631.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454677|gb|EAT04942.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 409

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD + I   + +    +  + +  A S  +A E       P+ +++D  M G+   
Sbjct: 15  TILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDGH 73

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V ++    D      G + GA  ++ KP   E LR  +R   ++
Sbjct: 74  EVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHIKL 133

Query: 121 ---QKSKDENQFLDA 132
              Q + +E +   A
Sbjct: 134 KLYQSALEEARRRAA 148


>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 239

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +  + +      G+ V  AT+  E  +       P  +++D ++    
Sbjct: 1   MLRILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRA-FQPGLVILDLNLPDVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +++      V+V  L   V+    + G + GA+ +L KPF+   L+  ++ + 
Sbjct: 60  GYDLCQQMQKETG---VYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAIL 116

Query: 119 QMQKSKDE 126
           +  +++ E
Sbjct: 117 RRGRTRTE 124


>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    + GF V  A++  E  +  ++   P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQST-PDLVISDVMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R+ P    + V +L  +      I G +AG +++L KPF+ + L   +  L   +
Sbjct: 64  FLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLLIRR 123

Query: 122 KSKDE 126
            SK +
Sbjct: 124 NSKPQ 128


>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 277

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    VR+V        G+ V  A    EA E   +E  P+ +V+D  +  +  F
Sbjct: 33  TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRES-PDLVVLDVMLPKLDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 92  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 148


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEK-PDLIVLDLMLPEMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      DV +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 66  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 123 SKDE 126
            K E
Sbjct: 126 GKAE 129


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA E       P+ LV+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMI-ASDRPDALVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 123 SKD 125
            +D
Sbjct: 123 PED 125


>gi|94264441|ref|ZP_01288230.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455131|gb|EAT05353.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 409

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD + I   + +    +  + +  A S  +A E       P+ +++D  M G+   
Sbjct: 15  TILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDIMMPGMDGH 73

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V ++    D      G + GA  ++ KP   E LR  +R   ++
Sbjct: 74  EVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKPEILRVRVRNHIKL 133

Query: 121 ---QKSKDENQFLDA 132
              Q + +E +   A
Sbjct: 134 KLYQSALEEARRRAA 148


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVL 60
            ++L+VD    +R +      D GF +FEA++  EA           + +++D  M  + 
Sbjct: 5   KTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLD 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + +   + + +  L      E  + G   GA+ +L KPF  E L   ++ L + 
Sbjct: 65  GFEVC-KIVREYSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRR 123


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + +      G++ FEA    E  E        + +++D  M G  
Sbjct: 1   MQKILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKL-TNHSFDLILLDVMMPGKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++    +  V  +    +    + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 60  GF-QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKR 118


>gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
          Length = 225

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA    EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|298531125|ref|ZP_07018526.1| response regulator receiver modulated serine phosphatase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509148|gb|EFI33053.1| response regulator receiver modulated serine phosphatase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 381

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD S +  ++   +  D  + V  A    +A +    +  P+ +++D  M G    
Sbjct: 10  KILVVDDSPLNIRILSSILKD-DYRVQTALHGDKALQIIFGDDPPDLILLDIMMPGIDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + V ++    D E    G   GA  ++ KPF+   ++  ++   ++
Sbjct: 69  EVCRRIKADPGTAGIPVIFVTGRSDVEDEAYGLSLGAVDYITKPFHFPIIKARVKNHLEL 128

Query: 121 QKSKDENQ 128
            ++K   Q
Sbjct: 129 LQAKRSAQ 136


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         +A         PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKAL-IAYDTYQPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAK---SNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RYQA 124


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M +LL+ D +  +  +        G+    A   C A E   ++L P+ +++D  M    
Sbjct: 1   MLTLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELF-QQLQPDLVLLDVMMPKVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    ++V +  +    +  + I G   GA+ +++KPF+   +   +R + 
Sbjct: 60  GFEVCREIRK---TSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAIL 116

Query: 119 QMQKSKDENQ 128
           +     DE +
Sbjct: 117 RRISQNDEEK 126


>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 225

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA E  E + +P+ ++ D  M  +  
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILE-QDVPDMIICDVMMPEMDG 78

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ    + + V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 79  YTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138

Query: 120 MQKSKDENQ 128
                 E+Q
Sbjct: 139 QTIRWKEHQ 147


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +  + R    D G+ +        A    EK+   + +++D  +    
Sbjct: 1   MKQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSW-DAVILDLMLPSVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQM     + V  +         I G   GA+ +L KPF+ + L   ++ L 
Sbjct: 60  GLEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117

Query: 119 QMQKSKDENQ 128
           + Q++  + Q
Sbjct: 118 RRQQAMGQAQ 127


>gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 260

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R +        GF V +A    +  +    +  P+ +++D  +   
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKG-QALALQYSPDLILLDLMLPSV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+    +++ +  +      +  + G  +GA+ ++ KPF+ E L   ++ L
Sbjct: 60  DGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKAL 119

Query: 118 PQMQKSKDEN 127
            +       N
Sbjct: 120 LRRTNRAQLN 129


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + +V        G+ V +A    E  E        + +++D  +  + 
Sbjct: 1   MPKILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGG-FDLVLLDIMLPSMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + V V  +         ++G  +GA+ ++ KPF  E L   +R   + 
Sbjct: 60  GM-EVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRK 118

Query: 121 QKSKDENQFLDA 132
           +  + E+  L A
Sbjct: 119 RPVRQESAVLTA 130


>gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1253

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +H +R     L N + F +  A +  +A      + +P+ ++ D  M  +  
Sbjct: 646 TRILIVDDNHDMRDYLVRLLNPY-FTIDTALNGQDALLKIGAQ-MPDLVLSDVMMPVMDG 703

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R       + V +L      E  I G   GA+ +L+KPF+   L   +R    
Sbjct: 704 KAMLERIRSNENTLRLPVIFLSARAGEEARIDGLEMGADDYLVKPFSAAELLTKVRAQIH 763

Query: 120 MQKSK--DENQF 129
           + KS+   E Q 
Sbjct: 764 ISKSRGYAEQQL 775


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 1991

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLVD +  +R     L       V  AT+  +A E    +  P+ ++ D  M G+  F
Sbjct: 1620 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQP-PDLVLADVMMPGLDGF 1678

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R       + +  L      E  + G ++GA+ +L+KPF+   L   +R    M
Sbjct: 1679 GLVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDM 1738

Query: 121  QKSKDE 126
             + + E
Sbjct: 1739 ARVRRE 1744



 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LL D +  +R     L +   + V   +    A         P+ ++ D  M G   L
Sbjct: 605 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANP-PSLIISDVMMPGVNGL 662

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R       + +  L      E  I G  +GA+ +L+KPF+ + L   +  L  +
Sbjct: 663 ELVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 722

Query: 121 QKSKD 125
            + + 
Sbjct: 723 SQLRQ 727


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score =  143 bits (362), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +  + +      G+ V  A    EA +    E  P+ +++D  + G   +
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSE-QPDLILLDLMLPGKDGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR         +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  DVCREVRAKLE---TPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 119

Query: 121 QK 122
           Q+
Sbjct: 120 QQ 121


>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD    + ++ +   +  GF V  AT+  +A +   +E  P+ +++D  +  + 
Sbjct: 1   MPLILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIA-REKKPDLIILDVMLPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  ++         V  L  + +    + G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GYDVLQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARL 119

Query: 119 QMQKS 123
           + + +
Sbjct: 120 RRKSA 124


>gi|186683964|ref|YP_001867160.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186466416|gb|ACC82217.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 440

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +   +  + GF V        A +  E E LP+ +++D  M G+  F 
Sbjct: 18  ILVVDDTTTNLGIVFDILTNVGFKVVTENDGSRALKQAE-EQLPDLILLDVMMPGIDGFE 76

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++     D+ V ++    D    + G   GA  ++ KPFN E L   ++   Q++
Sbjct: 77  TCKRLKENSATYDIPVIFMTANSDTNSKVRGLNIGAVDYITKPFNEEELLARIKTHLQLR 136

Query: 122 KSKDENQFLDA 132
                 +   A
Sbjct: 137 NLTKTLEKRVA 147


>gi|330817959|ref|YP_004361664.1| Putative two-component system, response regulator [Burkholderia
           gladioli BSR3]
 gi|327370352|gb|AEA61708.1| Putative two-component system, response regulator [Burkholderia
           gladioli BSR3]
          Length = 241

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAAT-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|319642327|ref|ZP_07996985.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317386050|gb|EFV66971.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1343

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R+    + +   + V        A E  E+E +P++++ D  M  +   
Sbjct: 1087 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEE-IPDFIITDIMMPRMDGI 1144

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I H+++     D+ +  L  +   E  I   + G + ++ KPF+ + L+  +  L + 
Sbjct: 1145 ELIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQ 1204

Query: 121  QK-----------SKDENQFLDAI 133
            +K           ++ + + L+A+
Sbjct: 1205 RKVLQSAFLSKYGAQPKKEPLEAV 1228


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 241

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA E   +      +++D  +  +    
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNY-ACILLDLMLPEMDGIE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      +  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 64  VASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 124 KDENQ 128
            +  Q
Sbjct: 123 ANSEQ 127


>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 219

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62
           LLVD    +R++     ++FG+   EA +  +A    + E   +++++D  M  +  +E 
Sbjct: 2   LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHY-DFVILDIMMPEMNGIEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R+    +DV + +L  + +    + G R GA+ +++KPF+   L   M  + + 
Sbjct: 61  CKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRE-NRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    +  +  +     GF V  ATS  EAR         + +++D  + G  
Sbjct: 1   MATILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHP-IDLMLLDVMLPGKS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +R       + +  +    D    I G   GA+ ++ KPF+   +   +R + 
Sbjct: 60  GVDLTRELRGEQN--RIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVL 117

Query: 119 QMQKSKDENQ 128
           +    + E Q
Sbjct: 118 RRLDKQQEPQ 127


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+  H +  + R    D G+ +        A +  E +   + +++D  +    
Sbjct: 7   MKQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPW-DAVILDLMLPNVD 65

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQM     + +  +         I G   GA+ +L KPF+ + L   ++ L 
Sbjct: 66  GLEICRRIRQM--TRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 123

Query: 119 QMQKSKDENQ 128
           + Q++  + Q
Sbjct: 124 RRQQAMGQAQ 133


>gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
            CCY0110]
 gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
            CCY0110]
          Length = 1324

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 13/142 (9%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-------KELLPNYLVIDES 55
             +LLV+ +  +R   + L + + + V  A    EA               + + ++ D  
Sbjct: 945  KILLVEDNADMRNYLKRLLDPY-YEVETANDGLEALTLIRNVSDHNNHGAMYDLILTDIM 1003

Query: 56   ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            M      E +  +R       + +  L      E  I G  AGA+ +L KPF+   L   
Sbjct: 1004 MPRLDGFELLQSLRDNSEMQKIPIIMLSARAGEEFQIEGLEAGADDYLWKPFSARQLLAR 1063

Query: 114  MRELP---QMQKSKDENQFLDA 132
            ++      QM++ +  N+ L+A
Sbjct: 1064 VKTHLKLTQMRQVQALNETLEA 1085


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1296

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD +  +R    +L     + V  A    EA    E+  +P+ ++ D  M       
Sbjct: 657 VLVVDDNADMRAYIANLLKAH-YEVVLAGDGVEALAAVER-RMPDLVLTDVMMPRLDGFG 714

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +A +R       + V  L      E  +AG   GA+ +L KPF    L   ++   ++ 
Sbjct: 715 LLAALRTDERTRALPVIVLSARAGEEATLAGLERGADDYLSKPFAARELLGRVKANLELS 774

Query: 122 KSKDENQFL 130
           + + E   L
Sbjct: 775 RLRGETARL 783


>gi|119487004|ref|ZP_01620876.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455933|gb|EAW37067.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 355

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD + + R +        G+ V  A++  EA E    + L + +++D  M  +    
Sbjct: 10  VLIVDDNEVNRDLLARRITREGYQVMLASNGFEALEMMRSQPL-DLVLLDIMMPQMNGYQ 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  V+       + +  +    D E ++     GA  +L KPFN   LR  +    + +
Sbjct: 69  VLEAVKADQSLRYIPMIMISAVNDIESVVRCIELGAEDYLSKPFNPVLLRARINACLEKK 128

Query: 122 KSKDENQ 128
           + +D+ +
Sbjct: 129 RLRDQER 135


>gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1012

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           + +VD   I  +V  ++ +   + + +A+   EA    E    P+ +++D  M  +   E
Sbjct: 639 VFIVDDEPINLQVLMNMLSLHDYTITQASDGEEALAILETGYKPDIILLDVMMPKMTGYE 698

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    T++ +  L  +   + ++ G   GAN +L KP  ++ L   M+    M 
Sbjct: 699 VTQKIRERFTTTELPILLLTAKTQVQDIVTGLGFGANDYLNKPIAKDELLARMKTQINMC 758

Query: 122 KSKDENQFLDA 132
           + + EN  L A
Sbjct: 759 RLRAENIRLSA 769


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V  A+    A +   KE   N +++D  +  + 
Sbjct: 5   MTKILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKA-KEQQFNAILLDLMLPEMD 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  +  + D    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 64  GMTVLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRR 123

Query: 121 QK 122
            +
Sbjct: 124 SQ 125


>gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis
           C6786]
          Length = 345

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +              G+ V  A S  +A +   + + P+ +++D  M  +  F 
Sbjct: 35  ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 93

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q      + V ++    + E ++ G R G   ++ KP   E L   +    +  
Sbjct: 94  TCLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 153

Query: 122 KSK 124
           +++
Sbjct: 154 RAQ 156


>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 239

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF+V    +  +A +        + +V+D  + G    
Sbjct: 6   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQA-DRLLTRENFSLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + V  L  + D    I G   GA+ +L KPFN   L   +R + +  
Sbjct: 65  SICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRH 123


>gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein sphR
 gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942]
 gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 257

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 12/132 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54
            +L+V+   ++R +   +    GF V  A     A  +   +          P+ +V+D 
Sbjct: 25  RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84

Query: 55  SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            +     L+F   +R+   G  V +  L  +      + G   GA+ +L KPF    L  
Sbjct: 85  MLPAVNGLDFCRLLRRQ--GVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVA 142

Query: 113 AMRELPQMQKSK 124
             R L +  +++
Sbjct: 143 RCRALLRRSQNQ 154


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 8/130 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M  +  L+ D    +  +        G+ V +A    EA +  +   + +  ++D  M  
Sbjct: 1   MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSV-DLAILDIMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E I  +R+      + + +L  +      IAG   GA+ ++ KPFN   L   +  
Sbjct: 60  LDGYEVIRQIREQ---HHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNA 116

Query: 117 LPQMQKSKDE 126
             +      +
Sbjct: 117 HLRRYMQMSQ 126


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  +         V  A    EA E  +     + +++D  +    
Sbjct: 1   MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDY-DIVLLDIMIPVYT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GIEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 116

Query: 119 QMQKSKD 125
           +    K 
Sbjct: 117 RRSNRKQ 123


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ D    +  +        G+ V +A    EA    + +   + +V+D  M  
Sbjct: 1   MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQP-IDLVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---YHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis
           EO147]
          Length = 347

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +              G+ V  A S  +A +   + + P+ +++D  M  +  F 
Sbjct: 37  ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 95

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q      + V ++    + E ++ G R G   ++ KP   E L   +    +  
Sbjct: 96  TCLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRRS 155

Query: 122 KSK 124
           +++
Sbjct: 156 RAQ 158


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD    +  V +      GF V  A +   A     KE   + +++D  + G+   
Sbjct: 2   RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLF-KENSYDLVLLDLMLPGLSGE 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++       V  L  +V+ E  + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 61  EICREIRKISA---TPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRR 117

Query: 121 QKSK 124
              +
Sbjct: 118 THIE 121


>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 231

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + K+  H      F V  A +  EA E   K + P+ +++D  +  +  F
Sbjct: 5   KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAK-VSPDLVLLDLMLPDIDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     +D+ +  L  + D    I G + G + +  KPF+   L   +R + + 
Sbjct: 64  EVCRRIKSR---SDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRR 120

Query: 121 QKSKDE 126
            K   E
Sbjct: 121 SKGCKE 126


>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 260

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E    +   + +V+D  + G+ 
Sbjct: 36  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGTQGAIDLVVLDLGLPGMD 94

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 95  GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    +  + R+     G+ V       EA     +E +P+ +++D  + G   +
Sbjct: 4   RILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRL-RESVPDLVILDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + V  L    +  + + G   GA+ +++KPF+   L   +R L + 
Sbjct: 63  ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122

Query: 121 QKSKDENQFLDA 132
            K +     L A
Sbjct: 123 AKPEHVATLLRA 134


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R      GF+V EA    EA +   ++     +++D  M  +   
Sbjct: 5   KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    + +  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCRTIRK---YSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDEN 127
             +  + 
Sbjct: 122 SSTMSQE 128


>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 231

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    + GF V  A++  E  E  ++   P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNT-PDLVISDIMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R  P    + V +L  +      I G +AG +++L KPF+ + L   +  L + +
Sbjct: 64  FLKQLRDDPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLLEKR 123


>gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
 gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
          Length = 235

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +     +       P+ +++D  M G   
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHH-PDLIILDIMMPGEDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQKSKD 125
             +S  
Sbjct: 120 RSQSTA 125


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD   I  +V  +  +   + + +ATS  EA    E+   P+ +++D  M  +   
Sbjct: 579 TILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILDIMMPKMSGY 638

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    T++ +  L  +     ++ G   GAN +L KP ++  L   ++    +
Sbjct: 639 EVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISKHELIARIKTHLHL 698

Query: 121 QKSKD 125
                
Sbjct: 699 SNINR 703



 Score =  110 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 3   SLLLVDSSHI----VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
            +L+VD        +R+  R            A +  +A E    +   + ++ D +M  
Sbjct: 4   KILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHAQPDIDMVLTDINMPE 63

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL----RFAM 114
           +                    L    D E +      GA  FL KP + + L       +
Sbjct: 64  MDGLTLLTHLAQDYPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPIDFQDLDITTHKTL 123

Query: 115 RELPQMQKSKDENQFLD 131
             + Q  K+  + ++L 
Sbjct: 124 NHV-QQLKAAQQQEYLA 139


>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L+V+    +R   +       F V EA +  E  E   K   P+ +V+D  + G  
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PDVVVLDIMLPGVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     ++ +  L  +      ++G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117

Query: 119 QMQKSKDE 126
           +   +  E
Sbjct: 118 RRVNAVKE 125


>gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1481

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R   + +F    F V EA +     E   K   P+ +V D  M G+   
Sbjct: 1209 SILIVEDNQELRFFLKTIFIQH-FNVIEAENGKSGLEK-SKNCQPDIIVSDVMMPGMDGI 1266

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+    + + +  L  + + E  I G + GA+ ++ KPF+   L+  +  L + 
Sbjct: 1267 EMVRALREDITTSHIPIVLLTAKSNTESKIEGMKQGADDYITKPFSAAYLKARIFNLLEQ 1326

Query: 121  QKSKD 125
            +K   
Sbjct: 1327 RKKLQ 1331


>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 230

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +      GF V  A       +    E   + +++D  + GV  
Sbjct: 3   KRILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKK-GLEGEFDLIILDLMLPGVDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R      +  +  +  + D    I G   GA+ ++ KPF+   L   ++    
Sbjct: 62  FEICRQIRSQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118

Query: 120 MQKSK-----DENQFLD 131
             +       ++N+ ++
Sbjct: 119 RYERLIGSNVEQNEVIE 135


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++     ++ G+ V +A    EA          + L++D  M  + 
Sbjct: 1   MK-ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ + + 
Sbjct: 60  GM-EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 121 QKSKDENQFLDAI 133
            + +   +  D +
Sbjct: 119 SRMQLTKEEPDEL 131


>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
 gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++         F    A     A     +E  P+ +++D  + G   
Sbjct: 5   KKILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLF-QEYQPDLILLDIMLPGKDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R+    + V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YDVCREIRK---TSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 226

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+V+   I+R+   H F+  G+ V  A       +   E+E   + +++D  +  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 61  DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117

Query: 118 PQMQKSKDENQ 128
            +    + + Q
Sbjct: 118 FKDTNQQVQYQ 128


>gi|148656813|ref|YP_001277018.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1]
 gi|148568923|gb|ABQ91068.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1]
          Length = 969

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    VR++ + L ++ G+ V  AT+  EA  + E  + P+ +++D ++ GV    
Sbjct: 7   ILVVDDDASVRRMLQILLSNAGYRVSLATTGEEALAYLEL-VTPDLVLLDVALPGVSGRQ 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  P    + V  +    D E  +A   AGA+ FL+KP +   L   +R + ++Q
Sbjct: 66  VMERIKSDPDRPFIPVILVTGHSDPEAKVAALDAGADDFLVKPVDLAELLARVRAMLRLQ 125

Query: 122 KSKDENQ 128
           +S+   +
Sbjct: 126 RSQRSLR 132


>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus epidermidis FRI909]
 gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU144]
 gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU045]
 gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU028]
          Length = 236

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +  E E  P  +V+D  +     
Sbjct: 3   QKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETE-QPELIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQ 128
             +  +E +
Sbjct: 120 RSQFVNEIE 128


>gi|73748021|ref|YP_307260.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73659737|emb|CAI82344.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 233

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD   I+ K  +  F   G++V  A +  EA     +  +P+ +V+D  M  
Sbjct: 1   MRKNNILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQN-IPDIIVLDVLMPV 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++     + + +  L  +      I   + GA+ +L KPF+ + L   +  + 
Sbjct: 60  MDGMETCIQIRKQ-SSIPIIMLSAKGSSFDKIQCLKLGADDYLTKPFDIDELTARVESVL 118

Query: 119 QMQKSKD 125
           +   +K+
Sbjct: 119 RRAGNKN 125


>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1609

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +L+VD   + ++V ++  N   + + +  S  EA +  + +   + +++D  M  +   E
Sbjct: 1200 ILIVDDEVVNQQVLKNFLNKAIYRITQVLSGEEALQVLDDDDTIDLVLLDVMMPRMSGYE 1259

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R+  L +++ V  +  +     ++ G   GAN ++ KPF+++     +     + 
Sbjct: 1260 VCQKIREKHLPSELPVLMITAKNQVSDLVTGLNTGANDYIAKPFSKDEFLARLNMHLSLH 1319

Query: 122  K 122
            K
Sbjct: 1320 K 1320


>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 231

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    + GF V  A++  E  E  ++   P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNT-PDLVISDVMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R  P    + V +L  +      I G +AG +++L KPF+ + L   +  L + +
Sbjct: 64  FLKQLRDDPRFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLLEKR 123


>gi|255034345|ref|YP_003084966.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254947101|gb|ACT91801.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1324

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++L+V+ +  +R   R LF    F   EA +     +    E LP+ ++ D  M  +  
Sbjct: 1072 NTILIVEDNDQLRVFIRELFESE-FNTLEAENGLRGLQLA-NEHLPDIVLSDIMMPDMNG 1129

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +H+++    + + V  L      +++I G  +GA+ +L+KPF+   L   +R L +
Sbjct: 1130 LQLCSHLKKNITTSHIPVVLLTARAQNQQIIEGLASGADDYLVKPFDPRILELKVRNLIR 1189

Query: 120  MQ 121
            ++
Sbjct: 1190 LR 1191


>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 252

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IA 64
           V+    V +V        GF V       EA      E +P+ +V+D  + G+       
Sbjct: 2   VEDDPTVNEVVCRYLKASGFQVETVADGLEAV-RVATERMPDLVVLDRMLPGLDGLEVCR 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +R     + V V  L      E  + G  AGA+ +L KPF+   L   +R + + 
Sbjct: 61  RIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 116


>gi|167753811|ref|ZP_02425938.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216]
 gi|167658436|gb|EDS02566.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216]
          Length = 225

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A S  +A          + L++D  M  +  F
Sbjct: 5   KILVVDDEESLCEILKFNLELEGYEVDVAYSAEQALAM--HPERYSLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    V + +   +   +  +AG   GA+ ++ KPF+   +   +R + + 
Sbjct: 63  KMARMLKSSPETAAVPIIFCTAKDTEDDTVAGLNLGADDYISKPFSMREVTARVRSVLRR 122

Query: 121 QKSKDENQFL 130
            +++ E + +
Sbjct: 123 SQARQEEEAI 132


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L++D    +  + +   N  GF V+ A    EA E  E E+ P+ +++D  + G   
Sbjct: 4   KKILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE-EVQPDLILLDIMLPGRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  IEVCREVRKK---YDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLR 119

Query: 120 MQ 121
             
Sbjct: 120 RH 121


>gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 226

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+V+   I+R+   H F+  G+ V  A       +   E+E   + +++D  +  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 61  DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117

Query: 118 PQMQKSKDENQ 128
            +    + + Q
Sbjct: 118 FKDTNQQVQYQ 128


>gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella buccae D17]
 gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella buccae D17]
          Length = 1340

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+    +       F   G+ V  A +  E  E   KE   + +V D  M  +   
Sbjct: 1096 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERL-KEHTVSLIVSDWMMPVMDGA 1153

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   VR     + + +  L  + D +    G   GA++++ KPF+ + L   +R +  M
Sbjct: 1154 EFCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNMLDM 1213

Query: 121  QKSKDE 126
            ++   +
Sbjct: 1214 RRLLMQ 1219


>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 117 RRTNQRTQIQ 126


>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++  +     GF+    T    A    E+E   +++V+D  +  +  
Sbjct: 3   KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPY-DFIVLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G+   +  +  + D    +     GA+ ++ KPF+   L   ++ + +  
Sbjct: 62  IEVCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 121

Query: 122 KSK 124
           +++
Sbjct: 122 EAE 124


>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
 gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
          Length = 226

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +      G+ V EA    EA +        N LV+D  M  +  +
Sbjct: 5   KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + V +  L  +   +  + G   G + ++ KPF+ + L   +  + +   
Sbjct: 65  -EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRT- 122

Query: 123 SKDENQFLDA 132
            + E + ++A
Sbjct: 123 VQTEGEQIEA 132


>gi|160890899|ref|ZP_02071902.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492]
 gi|156859898|gb|EDO53329.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492]
          Length = 658

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+ +  + ++   L     + V  A +  EA    + E   + +V D  M  +   
Sbjct: 406 TILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNED-IDLIVSDVMMPVMDGI 463

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   V+     + + V  L  +   E        GA++F+ KPFN   L   +R L + 
Sbjct: 464 EFCRCVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKY 523

Query: 121 QKSKDEN 127
           ++ K  +
Sbjct: 524 KERKAHD 530


>gi|71905989|ref|YP_283576.1| PAS [Dechloromonas aromatica RCB]
 gi|71845610|gb|AAZ45106.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 513

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD +     + +      G  V  A +  EA    E +  P+ +++D  M  + 
Sbjct: 8   MK-VLAVDDNRTNLHILQVFLKKLGHEVVLAENGEEAVRRFETD-APDLVLLDIMMPVMD 65

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++ M       V +L      E ++ G  AGA+ +L KP N   L   +R + 
Sbjct: 66  GFEAARRIKAMTRDRWTPVIFLSALNRDENLVEGLDAGADDYLTKPINFVVLEAKLRSMQ 125

Query: 119 Q----MQKSKDENQFLDAI 133
           +     Q+S D  + + AI
Sbjct: 126 RSLTMQQQSIDSLRRVQAI 144


>gi|86136783|ref|ZP_01055361.1| response regulator [Roseobacter sp. MED193]
 gi|85826107|gb|EAQ46304.1| response regulator [Roseobacter sp. MED193]
          Length = 410

 Score =  143 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD S + R++       +GF V EA S   A E C K+  P+ ++ D  M G+  L
Sbjct: 7   RVLVVDDSRLQRRILVASLQKWGFDVVEAESGEAAMEICRKDP-PDLILSDWMMPGMNGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---REL 117
           EF    R+       +   L  + +  ++  G  AGA+ FL KP + + LR  +     +
Sbjct: 66  EFCQAFREQSRDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 125

Query: 118 PQMQKSKDENQFL 130
            +MQ+   E   +
Sbjct: 126 LKMQRELSEKNRI 138


>gi|240143855|ref|ZP_04742456.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257204143|gb|EEV02428.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 195

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R       + V EA     A +   +E     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEAALDIFYQEKNIALIILDVMMPKMNGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L  + D E  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCREIRE---TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRR 121

Query: 121 Q-KSKDENQFLD 131
             K+ +E + L 
Sbjct: 122 SGKAPEEGKLLS 133


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A+      E        + L++D  +     L
Sbjct: 2   RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTG-EQLATHQPYDLLILDWMLPERSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VRQ      V V +L      +  + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 61  DLCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118

Query: 121 QKSKDENQ 128
              ++ ++
Sbjct: 119 SPRQETSE 126


>gi|75908369|ref|YP_322665.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75702094|gb|ABA21770.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    ++        GF V  A    +A E  +   +P+ +++D  M  +  F 
Sbjct: 11  ILVVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQS-RVPDLILLDVMMPVMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++  P   D+ V ++    D    +     GA  ++ KPF++  +   +    Q++
Sbjct: 70  TCKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISAHLQLR 129

Query: 122 KSKDENQ 128
                 +
Sbjct: 130 SLNKNLE 136


>gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 247

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    +R++     +  G+ V  A +  EA +       P+ +V+D  M       
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQF-HNCEPDLVVLDVMMPKLDGYG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + +  
Sbjct: 70  VIQELRKE---SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRV 126

Query: 122 KSKD 125
           + + 
Sbjct: 127 EKEQ 130


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score =  143 bits (361), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +  + +      G+ +  +    +A    + E   + +++D  +  +  F 
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNEN-FDMVLLDVMLPKMDGFT 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM--Q 121
              +++   ++V +  +  + D    + G   GA+ ++ KPF    L   +R   +   Q
Sbjct: 65  VC-KKVREFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123

Query: 122 KSKDENQFLDA 132
           +S  + + L A
Sbjct: 124 QSNSDGKVLKA 134


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+    +  +     +  G+ + +A     A E C  E LP+ +++D  +  +   
Sbjct: 5   KILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICY-ESLPDLIILDLMLPIMDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P+  D+ +  L    D   +I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  EVCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRR 123


>gi|156740320|ref|YP_001430449.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus castenholzii DSM 13941]
 gi|156231648|gb|ABU56431.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus castenholzii DSM 13941]
          Length = 331

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D +  +R+         G++   A +  EA      E LP+ +++D +M      
Sbjct: 4   KILVADDNPAMREAIVRFVEAEGYVALAARNGREALNLALAE-LPDLVLLDVTMPDYDGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + V  L +    E    G  AGA+ FL KPF+   LR  ++   + 
Sbjct: 63  EVCRRLKADPRTALIPVTMLTVLDAPEHRWRGIEAGADDFLTKPFDERLLRARIQSQLRT 122

Query: 121 QKSKDENQFLDAI 133
           ++  D+ +  +++
Sbjct: 123 KRLTDQLERTESV 135


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    ++++  +     GF V  A S  EA     +E   + +++D  + G
Sbjct: 1   MAKLHILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLARE-AFDCILLDIMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDV--FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              LE    +RQ     D    +  +  + + E +I G   GA+ ++ KPF+ + L   +
Sbjct: 60  ISGLEVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARV 119

Query: 115 RELPQMQKSKD 125
           + + +  +  +
Sbjct: 120 KAVVRRGQKAE 130


>gi|330998135|ref|ZP_08321963.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329569224|gb|EGG51015.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 865

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+ + +   R   + L     F V  A    E      +E  P+ ++ D  M  +   
Sbjct: 610 TVLVAEDNEQFRTFMKDLLRQE-FTVLTAADGQEGLAMA-REYGPDLIISDVMMPHMDGY 667

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   V+       + +  L  +   E       AGA+SF+ KPF+ + L   +R+L + 
Sbjct: 668 AFCRAVKDDVQCCHIPLILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIRQLLEQ 727

Query: 121 QKSK 124
           ++ +
Sbjct: 728 RERR 731


>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 223

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+VD    +R++  +     GF VF A +       C KE  P+ +++D  M G+ 
Sbjct: 1   MDKILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISIC-KEEKPDLVILDVMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      +V + +L    +    IAG  AGA+ ++ KP     L   +  L 
Sbjct: 60  GIEVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALL 119

Query: 119 QMQKS 123
           + ++S
Sbjct: 120 RRKES 124


>gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
 gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. L5]
          Length = 1381

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R+    L    G  V        A +       P+ +V D  M  +   
Sbjct: 631 RVLVADDNADMREYLTRLLRSAGHEVQAVADGRAALDAARAHT-PDLVVSDVMMPRLDGL 689

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R         V  L      E  I G  AGA+ +L+KPF    L   +R   ++
Sbjct: 690 QLVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRANVEL 749

Query: 121 QKSKDENQF 129
            + ++ +  
Sbjct: 750 ARLRNHHAR 758


>gi|170723373|ref|YP_001751061.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169761376|gb|ACA74692.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+ D    +R++ +   +  GF V       +      +    + +++D  +     
Sbjct: 6   KSILMADDDQEIRELLQTYLSRAGFQVHAEADG-QGFRHALENTHCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P  + V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRQSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAE 127


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ LV+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 123 SKDENQFLD 131
            +D  + + 
Sbjct: 123 PEDAAESMA 131


>gi|317486008|ref|ZP_07944863.1| sigma-54 interaction domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922781|gb|EFV44012.1| sigma-54 interaction domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 467

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +R   R +  D G+ V EA +  E  E  + E  P+ + +D  + G+ 
Sbjct: 1   MARILIIDDEEPIRFSLRGILEDEGYEVLEAATAEEGLEVADAE-RPDLVFLDIWLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  R      D+ V  +      E  ++  + GA  F+ KP + E +        + 
Sbjct: 60  GLTAQARLKGNHPDLPVVMISGHGTIETAVSAIQQGAYDFIEKPLSLEKVVIVAARALEA 119

Query: 121 QKSKDENQFLDAI 133
              + ENQ L  +
Sbjct: 120 GSLRRENQVLRTV 132


>gi|315919295|ref|ZP_07915535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313693170|gb|EFS30005.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1347

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LLLV+ +  +  + R + +   + V  A +  EA E   KE   + +V D  M  +   
Sbjct: 1096 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALE-VMKEYEADIIVSDVMMPEMDGL 1153

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + +  L  +   E  I    AGAN+++ KPF  + L   +      
Sbjct: 1154 ELCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1213

Query: 121  QKSKDENQFLDA 132
            +KSK E    DA
Sbjct: 1214 KKSKQEEFRSDA 1225


>gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ VF A +  EA    ++  LP+ +++D  M  +  
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRS-LPDLIILDIMMPKMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R MP   + F+ +L    +    IAG   GA+ ++ KP     L   +  + +
Sbjct: 65  IEACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124

Query: 120 MQKSKDEN 127
                +E 
Sbjct: 125 RNSPSEEL 132


>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L+V+    +R   +       F V EA +  E  E   K   P+ +V+D  + G  
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PDVVVLDIMLPGVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     ++ +  L  +      ++G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117

Query: 119 QMQKSKDE 126
           +   +  E
Sbjct: 118 RRVNAVKE 125


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +V      D  + V    +  +     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
           ++   +   +A
Sbjct: 124 EALSRDTRSEA 134


>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ D    +  + +      G+     ++  E  E  +     + L++D  M  + 
Sbjct: 1   MNRVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEY-DLLILDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R++   + + V  L  + D    + G   GA+ +++KPF+   L   ++   + 
Sbjct: 60  GF-ETLRELRKFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRR 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10]
 gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10]
          Length = 1104

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D   +  +V  +  +  G+    A+S  E  +F   E   + +++D  M G    
Sbjct: 694 RILIADDEPVNLQVLTNQLSLEGYETHLASSGEEVLDFIAAES-FDLIILDLMMPGISGY 752

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     D+ +  L  +   +  +    AGAN +L+KP  R  L   +R L ++
Sbjct: 753 EVCVSLREDFSLVDLPILMLTAKSGLDDKVIAFEAGANDYLVKPCERLELTSRVRTLIRI 812

Query: 121 QKSKDENQFLD 131
           +K  +E + L+
Sbjct: 813 KKMNEELKALN 823


>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    ++ +        G+    A    EA    +     + +++D  M  + 
Sbjct: 1   MAKILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNN-IDLMILDIMMPYLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R     T++ +  L  + + E  + G   GA+ ++ KPF+ + L   +  L + 
Sbjct: 60  GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  E E  P+ +++D  +     
Sbjct: 30  KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVE-EYDPDLMILDLMLPKKDG 88

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 89  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 147

Query: 122 KSKDENQ 128
               + +
Sbjct: 148 DIVKKAE 154


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +  +  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRGEPEE 124


>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +         +FG  V  A +  +  +  + E   + LV+D  M  + 
Sbjct: 1   MAKILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEP-FDLLVLDIIMPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   RQ+    D  V  L      + ++ G  AGA+ +L+KPF+ + L   +  L 
Sbjct: 60  GLDLCRQYRQLYGY-DSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALL 118

Query: 119 QMQKSKDENQF 129
           +  K K  ++ 
Sbjct: 119 RRSKEKRTSEL 129


>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R++ +       F   EA+   EA +   +      +++D  +  +
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDY-ACILLDLMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                   Q+    D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 60  DGIEVAT-QLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118

Query: 120 MQKSKDENQ 128
             +S    Q
Sbjct: 119 RTQSTTPEQ 127


>gi|330997764|ref|ZP_08321599.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
 gi|329569652|gb|EGG51417.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1320

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R      F D G+ V  A +  E     ++ L+P+ +V D  M  +    
Sbjct: 1070 VLVVEDNDDIRDYVASSF-DEGYRVVTAMNGREGWREAQR-LVPDIIVSDIMMPEMDGIG 1127

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V++    + + V  L  +        G  +GA+S+L KPF+   L   +R L  M+
Sbjct: 1128 LCRRVKEDVRTSHIPVILLTAKDSIRDKEEGYDSGADSYLTKPFSATLLNSRVRNLLDMR 1187

Query: 122  KSKDEN 127
            +     
Sbjct: 1188 RKLARM 1193


>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 222

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + R      G  V EA    EA +  + +   + +++D  M  + 
Sbjct: 1   MYRILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQD-FDIIILDIMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D  V  L    +    I G   G + +++KPF+ + L   +  + 
Sbjct: 60  GFSACKEIRK---YKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAIL 116

Query: 119 QMQKSKDENQ 128
           + +    EN+
Sbjct: 117 KRRGGAQENK 126


>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
 gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 117 RRTNQRTQIQ 126


>gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica]
          Length = 231

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    G  V  A    +A +  ++    + L++D  M    
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLDES--IDLLLLDIMMPRKN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             IA ++++ L     V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 59  G-IATLKELRLHHQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SNWSEQQQ 125


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 94_M4241A]
 gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T92]
 gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T17]
 gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis 210]
 gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN R506]
 gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN V2475]
 gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium bovis AF2122/97]
 gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis W-148]
 gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
          Length = 247

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 22  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 81  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|322419913|ref|YP_004199136.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
 gi|320126300|gb|ADW13860.1| response regulator receiver modulated diguanylate cyclase
           [Geobacter sp. M18]
          Length = 311

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ +     R + + +   +G+ V  A    EA +  + E  P  +++D  M G  
Sbjct: 1   MK-ILIAEDEPQFRDLLKEILEKWGYEVVVARDGNEAWQVLQSEDAPRLVILDWMMPGLK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    VR+      V++  L  +   + ++AG  AGA+ +++KPF    LR  +R   
Sbjct: 60  GIDICRKVREGSQDPYVYIILLTAQRQDDDLVAGMEAGADDYIIKPFKSNELRVRLRA-- 117

Query: 119 QMQKSKDENQFLDA 132
             +  + +N+ L A
Sbjct: 118 GRRIIELQNELLAA 131


>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 227

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    + ++        GF    A    E      +   P  +++D  + G+  F
Sbjct: 5   SILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNP-PAAVILDLMLPGLDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P      +  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  EVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKR 123

Query: 121 QKSKDENQFLDA 132
              + E + + A
Sbjct: 124 HAPEPEKRQVLA 135


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLE-EKEFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119


>gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 249

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    + ++        G+ V +A    +  +    +L+P+ +++D  +  V
Sbjct: 1   MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKG-QALAVQLVPDLIMLDLMLPRV 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L
Sbjct: 60  DGFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRAL 119

Query: 118 PQM 120
            Q 
Sbjct: 120 LQR 122


>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
           chloroplast
 gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
 gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
          Length = 255

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R++     +  G+ V  A     A     KE  PN +V+D  M      
Sbjct: 9   KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEH-PNLVVLDVMMPKIDGY 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 68  GVCQEIRKE---SDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124


>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
 gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V +A +  EA     +E +P+ +V+D  M     +
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEAL-LLVEEDMPDIIVLDWMMPNLTGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EICRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPATVGMRLE 136


>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
          Length = 240

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 15  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 74  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131


>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU144]
 gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU045]
 gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R++ +       F + EA    EA E   +      +++D  +  +
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNY-ACILLDLMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 60  DGIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118

Query: 120 MQKSKDENQ 128
             ++ +  Q
Sbjct: 119 RTQTANTEQ 127


>gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD  + +R++ R      G+ V +A    +  E    +  P+ +++D  M  +  
Sbjct: 4   RTILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQ-RPDLVILDVMMPEMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  +     + + V  L  +V  E +I G   GA+ +LLKPFN   L   +R L + 
Sbjct: 63  VEACTKLRE-FSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRR 120


>gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + +V   L    GF  F A +   A E  E E   + +++D  M  +  
Sbjct: 6   KNVLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESEN-ISLIILDLMMPDISG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  +VD   ++ G   GA+ +++KPF  + L   +  + +
Sbjct: 65  EEVCRAIRKKSR---VPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLR 121

Query: 120 MQKS 123
             +S
Sbjct: 122 RTES 125


>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A S   A +  + E  P+  ++D  M G+  
Sbjct: 9   TKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVD-EYQPDAFILDVMMPGMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +    G D  V +L  +   E  I G   GA+ ++ KPF+ E +   +R + +  
Sbjct: 68  FSLLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRV 127

Query: 122 KSKDENQ 128
             +DE +
Sbjct: 128 SPEDEKE 134


>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 237

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLVD    ++ +  +     G+ V +AT   EA    E E   + +V+D  +     
Sbjct: 6   TRILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFE-ERPFDLVVLDVMLPQLDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R       V +  L  + +    + G   GA+ ++ KPF+    R  ++   +
Sbjct: 65  LEVCRRLRSRSS---VPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALR 121

Query: 120 MQKSKDENQF 129
             +     + 
Sbjct: 122 RSELSRSAER 131


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF V  A    EA +  +     +  V+D  +  +  F
Sbjct: 10  TVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDH-QAGAHLDLAVLDVMLPDMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      ++ V +L    D +  I G   G + ++ KPF+ E +   +R + +   
Sbjct: 69  TILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTH 128

Query: 123 SKDEN 127
             D +
Sbjct: 129 PSDAD 133


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++        G+M     S  EA    ++   P+ +++D  +  +   
Sbjct: 7   SILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQR-FRPDVVLLDWMLPDLSGM 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R+      + V  L  +   E  +AG   GA+ ++ KPF+ + L   +  L + 
Sbjct: 66  RLLSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125

Query: 121 QKSKDENQFLDA 132
           +  +     L A
Sbjct: 126 KAPERAKSLLRA 137


>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 238

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++         F         EA     +E  PN +++D  + G   
Sbjct: 5   QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQY-REYQPNLILLDLMLPGIDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    VR+    + + +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YEVCREVRK---TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|265752180|ref|ZP_06087973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236972|gb|EEZ22442.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1441

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+VD +  +R     +     + + EA +  +  E    E LP+ ++ D  M  +   
Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLE-LPDLVLSDVMMPCMDGI 1232

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  V++    + +    L  +   +  I G   GA+ ++ KPF+   LR  +  L + 
Sbjct: 1233 ELLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLLKQ 1292

Query: 121  QKS 123
            ++ 
Sbjct: 1293 REM 1295


>gi|212691822|ref|ZP_03299950.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855]
 gi|237708028|ref|ZP_04538509.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|237724821|ref|ZP_04555302.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|265756177|ref|ZP_06090506.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|212665578|gb|EEB26150.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855]
 gi|229437016|gb|EEO47093.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
 gi|229457856|gb|EEO63577.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|263233768|gb|EEZ19377.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1329

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 67/155 (43%), Gaps = 25/155 (16%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R+   H  ++  + V   T+  EA +    E  P+ ++ D  M  +  
Sbjct: 1071 QRILVVEDNDDLREYLFHTLSEA-YQVETCTNGKEALKIIP-EFKPDLVLSDIMMPEMRG 1128

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM----- 114
             E  + ++   L + + V  L    D + ++ G   GA+ +L+KPFN   L+ ++     
Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188

Query: 115  -RELPQMQKSKDE---------------NQFLDAI 133
             R L + + +  E                QFL+A+
Sbjct: 1189 NRALLRRKYADMELHNDSISINYSNTLDQQFLEAV 1223


>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++ +      G+++ EA     A            +++D  + G+   
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDY-ALILLDVMLPGIDGV 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +RQ+       V  L  + +    + G   GA+ +++KPF+   + + ++ + + 
Sbjct: 66  EVCSRLRQV---KATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRR 122

Query: 121 QKSKD 125
             +  
Sbjct: 123 SSATA 127


>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H     GF V EA+   EA    +     + +++D  M  + 
Sbjct: 1   MACILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKA-DLVIMDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R      D+    L  + +  + + G   GA+ +L+KPF    L   ++ L 
Sbjct: 60  GWELCAEIR---DHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALL 116

Query: 119 QMQKSKDEN 127
           +  +     
Sbjct: 117 KRYRIASSQ 125


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ LV+D  M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 123 SKDENQ 128
            +D+ +
Sbjct: 121 PEDDAE 126


>gi|320160702|ref|YP_004173926.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
 gi|319994555|dbj|BAJ63326.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
          Length = 381

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++   +    G+ +  A++  +A      E  P+ +++D  M  V  F
Sbjct: 4   KILIVDDDVQTLRLVGLMLERQGYKILAASNGTQAISMARTE-RPDLILLDVMMPDVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P   D+ +     +   E  IAG  AGA+ +L KP +   L   MR +   
Sbjct: 63  SVARTLRKEPETADIPILMFTAKAQVEDKIAGYEAGADDYLTKPIHPAELTAHMRAILSR 122

Query: 121 QKSK 124
            K +
Sbjct: 123 NKGR 126


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +   +  GF V EA++  EA +   ++     +++D  M  +   
Sbjct: 13  KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 73  ETCRTIRK---YSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRR 129

Query: 121 QKS 123
             +
Sbjct: 130 SNA 132


>gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
 gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC341]
          Length = 1112

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V       E  E  ++E  P  L++D  M G+    
Sbjct: 707 LLVADDEPVNLRVLDSFLRLEGYRVHTVQDGHEVLEAVKREK-PELLLLDIMMPGMSGYQ 765

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +       
Sbjct: 766 VCEKLRQSYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHL--T 823

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 824 ASKAELRRVE 833


>gi|237799640|ref|ZP_04588101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022495|gb|EGI02552.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 140

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD    +R++        G+   EA +  +A      +  P+ +++D  + G   
Sbjct: 4   RSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQA-HAIIVDRKPDLILLDWMLPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++  L  D+ +  L  + + +  I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +RKV R      G++V EA    E  +    E  P+ +++D  M    
Sbjct: 1   MK-ILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFY-EWNPDLVLLDVMMPKKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++         V  L  +   E  I G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 59  GYEVCRAIKSE---KTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLL 115


>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|94500875|ref|ZP_01307401.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
 gi|94426994|gb|EAT11976.1| diguanylate cyclase (GGDEF domain) [Oceanobacter sp. RED65]
          Length = 294

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD       +      D  + V EAT+  +A +  +     + +++D  M  + 
Sbjct: 1   MTHILIVDDVASNLVLLGSHLEDQDYSVIEATNGPQALDLLQSHDDIDLVLLDVEMPKMS 60

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  ++Q     D+ V  +    D + ++ G   GA  +++KP++   L   +R   
Sbjct: 61  GLEVLRKIKQDEQIKDLPVILVTANGDDQNVVDGLDLGAVDYVIKPYSLSVLLARVRSAL 120

Query: 119 QMQKSKDENQ 128
           + ++  D  +
Sbjct: 121 REKERLDLME 130


>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 237

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +  + R+      F V  AT   +A     ++   +++++D  +  + 
Sbjct: 1   MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQK-FDFIILDLMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  L  + +    I G   GA+ ++ KPF+   +   +R + + 
Sbjct: 60  GIAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERR 119


>gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1348

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+ +  +R+          + + EA +  EA     KE   + ++ D  M  +   
Sbjct: 1102 KILIVEDNFDIRRYLSDELGKS-YHISEAGNGEEALALM-KEQEADLILTDVMMPVMDGL 1159

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + +  L  + D ++ + G + GA+ ++ KPF+   +   +R L + 
Sbjct: 1160 QLCKQIKQNLRTCHIPIIILSAKADLKEQLEGLQVGADDYIPKPFSMAVITTKIRNLFRT 1219

Query: 121  Q 121
            +
Sbjct: 1220 R 1220


>gi|265755299|ref|ZP_06090069.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263234441|gb|EEZ20031.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1344

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQV-RIPNIIVSDIMMPVMDGIE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211

Query: 122  K 122
            K
Sbjct: 1212 K 1212


>gi|237724088|ref|ZP_04554569.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229437548|gb|EEO47625.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1344

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQV-RIPNIIVSDIMMPVMDGIE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211

Query: 122  K 122
            K
Sbjct: 1212 K 1212


>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
 gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
 gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
 gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    ++ +        G+    A    EA    +     + +++D  M  + 
Sbjct: 1   MAKILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNN-IDLMILDVMMPYLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R     T++ +  L  + + E  + G   GA+ ++ KPF+ + L   +  L + 
Sbjct: 60  GFSVC-RVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 23  SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 81

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 82  TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 141

Query: 123 SKDEN 127
            + E+
Sbjct: 142 EQVED 146


>gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
 gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           RC586]
          Length = 1112

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+ D   +  +V        G+ V       E  E  ++E  P  L++D  M G+    
Sbjct: 707 LLVADDEPVNLRVLDSFLRLEGYRVHTVQDGNEVLEAVKREK-PELLLLDIMMPGMSGYQ 765

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ     ++ +  L      +  + G  AGAN +L KPFN++ L   +  +  + 
Sbjct: 766 VCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARI--IAHLT 823

Query: 122 KSKDENQFLD 131
            SK E + ++
Sbjct: 824 ASKAELRRIE 833


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  +  H     GF     +          + L P+ +++D  + G+  
Sbjct: 3   KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARR-LKPDAILLDLMLPGIDG 61

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++Q P  +   V  +  + +    + G   GA+ +++KPF+ + +   ++ + +
Sbjct: 62  LTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLR 121

Query: 120 MQKSKDEN 127
            ++++   
Sbjct: 122 RRETQQRL 129


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +++VD    +RK+ R      G+ V EA    EA +   ++     +++D  +  +  
Sbjct: 11  QKIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++   + V +  L  + D +  + G   G + ++ KPF+ +TL   ++ + +  
Sbjct: 71  FDVA-REIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRS 129

Query: 122 KSKDENQFLDA 132
             +++ + L+A
Sbjct: 130 GVEEQAKLLEA 140


>gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA    EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      D+ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 SNQASE 125


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    + +V        GF V EA    +A E        + +++D  +   G L
Sbjct: 2   KVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELF---PQADLVILDLMLPKVGGL 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ     ++ +  L  + + E  + G   GA+ +++KPF+   +   ++ L + 
Sbjct: 59  EVARLIRQ--ERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRR 116

Query: 121 QKSKDEN 127
              ++E 
Sbjct: 117 AGLREEL 123


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     G+ V       EA     +E +P+ +++D  + G   +E
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRL-RESVPDLVILDWMLPGLSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + V  L    +  + + G   GA+ +++KPF+   L   +R L +  
Sbjct: 64  LCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRA 123

Query: 122 KSKDENQFLDA 132
           K +     L A
Sbjct: 124 KPEHVATLLRA 134


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+V+    +  + ++     GF V  A       +   ++  P+ +++D  +     
Sbjct: 3   KTVLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQS-PDLILLDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R++ +  ++ +  L    D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  VEVCKELRRLRI--NIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1403

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            SLL+V+ +  + ++   L     +MV+ A +  EA +  E+E   + +V D  M  +   
Sbjct: 1142 SLLIVEDNEELLQLMTKLL-GADYMVYTANNGKEAIDVVEQEE-IDLIVSDVMMPEMDGI 1199

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F  +++     + + V  L  +   E  +    +GA+ F+ KPFN   L   +  L + 
Sbjct: 1200 EFCQYIKNKFETSHIPVVLLTAKNKEEDRVEAYESGADGFISKPFNLSVLHARISNLLRS 1259

Query: 121  QK 122
            ++
Sbjct: 1260 RE 1261


>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 245

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++        G+      S  EA E   ++ LP+ +++D  + G  
Sbjct: 1   MGRILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAV-RDALPDLVILDWMLPGES 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   R      ++ +  L      + M+ G  AGA+ +L KPF+   L   +R + 
Sbjct: 60  GVSLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVL 119

Query: 119 QMQ 121
           + +
Sbjct: 120 RRK 122


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+           +    GF V        A    ++    + +++D  + G  
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGA-DLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V +  L         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRTLRTRSS---VPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRSETEE 124


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+           +    GF V        A    ++    + +++D  + G  
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGA-DLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     + V +  L         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRTLRTR---STVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRSENEE 124


>gi|17228581|ref|NP_485129.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130432|dbj|BAB73043.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 378

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    ++ + + +    G+ +  A++  E          P  ++ D  M G  
Sbjct: 1   MFQILIIDDDLSIQILLKRILQKQGYQIVTASNGEEGITQALTS-RPALIICDWIMPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P  +  F   L         + G  AGA+ F+ KP  +  ++  +R   
Sbjct: 60  GLEVCHRIKTDPNLSTTFFILLTSLDSVADRVKGLDAGADDFITKPIEQNEMQARVRAGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + +
Sbjct: 120 RLHQLSRDLR 129


>gi|262195404|ref|YP_003266613.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262078751|gb|ACY14720.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 395

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +            + GF V  A    EA  +     LP+ +++D  M G+  F
Sbjct: 22  TVLIVDDNPENLGFLFEYLEECGFKVLVALDGEEALSYA-THALPDMILLDVMMPGIDGF 80

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++ MP   D  V ++    D +  +     G   ++ KP N+E +   +     +
Sbjct: 81  DTCARLKTMPEARDTPVIFMSALSDPQDKLRAFELGGVDYVTKPINKEEVLARINAHVSL 140

Query: 121 QKSK 124
           ++ +
Sbjct: 141 RRLQ 144


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +   +E  P+ +++D  + G   
Sbjct: 50  RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 108

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 109 MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 165

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 166 RHYSQPAQE 174


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      ++   +  + G+ V    S  +A      +  P+ +++D  M  +    
Sbjct: 13  ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDP-PDLILLDIKMPEMDGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V +L    +    +     G   ++ KPF  E +   ++    ++
Sbjct: 72  VCQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEVIARVKTQLTLR 131

Query: 122 KSKDENQ 128
             + + Q
Sbjct: 132 HIQQQLQ 138



 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL + + + +KV   L    G+     ++  E  +   ++   + +++D  M  +   
Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSY-DVILMDVQMPEMDGL 620

Query: 63  IAHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A        +    +  L      E      +AG + ++ KP  +  L    + +P  Q
Sbjct: 621 TATRYICQNYSQRPWIIALTANAMQEDRETCLKAGMDDYISKPIRQADLIRVFKMIPLRQ 680



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D +    ++       +G +     S  EA  +  ++   +  +ID  M  +  
Sbjct: 416 KRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDVAIIDRQMPEMNG 475

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +       ++ +  L          +       + L KP     L   + ++  
Sbjct: 476 LTLGLQIHNQSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLG 535

Query: 120 MQ 121
            Q
Sbjct: 536 RQ 537


>gi|218247529|ref|YP_002372900.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|257061135|ref|YP_003139023.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
 gi|218168007|gb|ACK66744.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|256591301|gb|ACV02188.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
          Length = 395

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      LL+VD +    ++   + ++ G+ V +A +   A      ++ P+ +++D +M
Sbjct: 5   MTKDKGNLLVVDDTPDNLRLLSAMLSEQGYKVRKALNGQIALNTV-SQVPPDVILLDINM 63

Query: 57  EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            G+   E    ++      D+ V ++    D    +     G   ++ KPF  E +   +
Sbjct: 64  AGMNGYEVCKILKSDQETQDIPVIFISALDDVLDKVKAFEVGGVDYITKPFQCEEVIARI 123

Query: 115 RELPQMQKSKDENQF 129
                +Q+ + + Q 
Sbjct: 124 ENQLTIQRQRKQLQQ 138


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D    +R++     +  GF+V  A    EA +   +   P+ +++D  M     
Sbjct: 6   QKILVADDEASIRRILETRLSMMGFVVITAADGEEALQVF-QHQEPDLIILDVMMPKLNG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +RQ    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + +
Sbjct: 65  YQVCQSLRQE---SDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|119488494|ref|ZP_01621667.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455305|gb|EAW36445.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 396

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++   +  +  + V +AT+  +A +  E +  P+ +++D  M  +    
Sbjct: 11  ILIVDDTPENLRLLSSMLEEQSYKVRKATNGKQALKAIEAQS-PDLILLDILMPEMNGYQ 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
              H++ +    D+ + +L    D    +     G   ++ KPF  + +   +R      
Sbjct: 70  IAKHLKSLDSTRDIPIIFLSALNDTMDKVFAFDVGGVDYITKPFQVQEVLVRVRTQITLR 129

Query: 119 -QMQKSKDENQFLD 131
            Q ++ +++NQ L 
Sbjct: 130 NQQKQLREQNQKLQ 143


>gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030]
 gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
 gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466]
 gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
 gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466]
 gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
 gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
 gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +     +       P+ +++D  M G   
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHH-PDLIILDIMMPGDDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQKSKD 125
             +S  
Sbjct: 120 RSQSTA 125


>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +          A    + E  P+ +++D  + G+  
Sbjct: 5   QRILIVDDDENIAELISLYLMKECYETKIVGDGESALADFD-EFKPHLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAKSG---TPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIR 120

Query: 120 MQKS 123
              S
Sbjct: 121 RYHS 124


>gi|320156983|ref|YP_004189362.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
 gi|319932295|gb|ADV87159.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
          Length = 242

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++     +  G+ V       + + +  +   P  +++D  + G   
Sbjct: 5   TRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    +    I G   GA+ ++ KPFN   L   ++ + +
Sbjct: 65  FSLCQFMRRE---STVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121

Query: 120 MQKSKDE 126
                 E
Sbjct: 122 RVHVTQE 128


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    V K+  +  +  GF     T+  +A    E E   +++++D  +  +  
Sbjct: 3   KQVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  MEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRT 121

Query: 122 KSKDE 126
           K + E
Sbjct: 122 KGEQE 126


>gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 249

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    VR V R      G+ V  A       E       P+ +V+D  + G+    
Sbjct: 12  VLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAE-PDLIVLDIMLPGLDGLQ 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R    G+ V +  L    + +  IAG  +GA+ +++KPF+ + L   +  + + 
Sbjct: 71  ICERLR-REDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRR 128


>gi|295085550|emb|CBK67073.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1350

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +++VD +  +      + ++  + V  A+S  EA +  EK    + ++ D  ME +  F 
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1144

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + V V  L  + D E  I G  AGA++++ KPF+   L+  +  L + +
Sbjct: 1145 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204

Query: 122  KSKDE 126
            +S+ +
Sbjct: 1205 ESQQK 1209


>gi|262406003|ref|ZP_06082553.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294806907|ref|ZP_06765732.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|262356878|gb|EEZ05968.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294445936|gb|EFG14578.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1342

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +++VD +  +      + ++  + V  A+S  EA +  EK    + ++ D  ME +  F 
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1144

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + V V  L  + D E  I G  AGA++++ KPF+   L+  +  L + +
Sbjct: 1145 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204

Query: 122  KSKDE 126
            +S+ +
Sbjct: 1205 ESQQK 1209


>gi|237718991|ref|ZP_04549472.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451769|gb|EEO57560.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1342

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +++VD +  +      + ++  + V  A+S  EA +  EK    + ++ D  ME +  F 
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1144

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + V V  L  + D E  I G  AGA++++ KPF+   L+  +  L + +
Sbjct: 1145 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204

Query: 122  KSKDE 126
            +S+ +
Sbjct: 1205 ESQQK 1209


>gi|237717236|ref|ZP_04547717.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229443219|gb|EEO49010.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1337

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +++VD +  +      + ++  + V  A+S  EA +  EK    + ++ D  ME +  F 
Sbjct: 1082 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNN-IDLIISDVMMEEMDGFE 1139

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + V V  L  + D E  I G  AGA++++ KPF+   L+  +  L + +
Sbjct: 1140 LCGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1199

Query: 122  KSKDE 126
            +S+ +
Sbjct: 1200 ESQQK 1204


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A+S  +  +       P+ +V+D  M G+  F
Sbjct: 17  RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVART-FRPDAIVLDVMMPGMDGF 75

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D  V +L  +   +  I+G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 76  GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 133


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    V KV        G+ V  A    EA E   +E  P+ +V+D  +  +  F
Sbjct: 26  TILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRES-PDLVVLDVMLPKLDGF 84

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 85  AVCRRIRGESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 141


>gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
 gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R+         G+ VF+A    E  E  E+E   +  ++D  M  +   
Sbjct: 11  RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREE-IHLAIVDIMMPRMDGV 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R      D  V +L  + +    I G   GA+ ++ KPF    L   +    +   
Sbjct: 70  TMVIRLREHY-DFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYN 128


>gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 239

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +  +R+V   L  + G+ V EA     A    E     + +++D  M  +  F
Sbjct: 14  RILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAE---DMDLIILDVMMPKMDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               RQ+   T+  + +L  +   +    G  +G + +L KPF+   L   ++ L + 
Sbjct: 71  -KACRQIREVTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRR 127


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD   ++ K  +      G+ V  A    EA  + +     + +++D  +     L
Sbjct: 4   KILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKY-DVMLLDVMLPKYDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR+    +++ +  L  + +    I G   GA+ ++ KPFN   L+  ++ + + 
Sbjct: 63  QVCQLVRE---FSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRR 119

Query: 121 QKSKDE 126
            +  ++
Sbjct: 120 SQHAEK 125


>gi|144898960|emb|CAM75824.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 388

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     V   L  D  + V  A+S  +A +       P+ +++D  M G    
Sbjct: 11  TILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAAAANPPDLILLDIMMPGLDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ V +L  + D +    G   GA  ++ KP +   +   +R   ++
Sbjct: 70  EVCQRLKLDPATRDIPVIFLTAKSDVDSERHGLELGAVDYISKPISPPIVLARVRTHLEL 129

Query: 121 QK----SKDENQFLD 131
           +      +D+N+FL+
Sbjct: 130 KASSDYLRDQNEFLE 144


>gi|260170975|ref|ZP_05757387.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1361

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LLLV+ +  +  + R + +   + V  A +  EA E   KE   + +V D  M  +   
Sbjct: 1110 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALE-VMKEYEADIIVSDVMMPEMDGL 1167

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + +  L  +   E  I    AGAN+++ KPF  + L   +      
Sbjct: 1168 ELCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAE 1227

Query: 121  QKSKDENQFLDA 132
            +KSK E    DA
Sbjct: 1228 KKSKQEEFRSDA 1239


>gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ VF A++  EA     KE+ P+ +++D  M  +  
Sbjct: 6   QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQA-KEVNPDLIILDVMMPQMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R MP     F+ +L    +    IAG   GA+ ++ KP     L   +  + +
Sbjct: 65  IEACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILR 124

Query: 120 MQKSKDE 126
              ++DE
Sbjct: 125 RNTAEDE 131


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    ++++ ++   + G+ V  A    EA      E   + +V+D  +    
Sbjct: 1   MQRILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERY-DLIVLDIMLPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +DV +  L      E  I G     + ++ KPF+   L   +  + 
Sbjct: 60  GYGVCELIRKQ---SDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVL 116

Query: 119 QMQKSKDENQ 128
           +    + + +
Sbjct: 117 RRSNRETDEK 126


>gi|119486865|ref|ZP_01620840.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
 gi|119456158|gb|EAW37291.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
           8106]
          Length = 564

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R+    L     F V  A +  +  E  +K  +P+ ++ D  M  + 
Sbjct: 1   MTKVLIIEDEDSIRENIAELLEIEDFEVETAANGIQGLETAKK-TIPDLILCDVMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     +    +L  + +   +  G   GA+ +L KP + + L  A+    
Sbjct: 60  GYQVLTELRKHSETANTPFIFLTAKAERMDLRQGMNLGADDYLTKPCSSQELLEAIVARL 119

Query: 119 QM 120
           Q 
Sbjct: 120 QR 121


>gi|300868140|ref|ZP_07112774.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
 gi|300333875|emb|CBN57954.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillatoria sp. PCC 6506]
          Length = 440

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V   L ++  F V+ A     A E      LP+ +++D  M G+  F 
Sbjct: 11  VLIVDDNSNNLGVLYDLLDNASFEVWVAQDGESAIEKVGYA-LPDLILLDIMMPGIDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               ++  PL  D+ V ++    +    + G   GA  ++ KPF +E +   ++   ++ 
Sbjct: 70  TCNRLKANPLTADIPVIFMSAMSESIDKVKGLSLGAVDYITKPFQQEEVLARVKLHLKLY 129

Query: 121 ---QKSKDENQFLD 131
              +K + +NQ L+
Sbjct: 130 YLTKKIEKQNQELE 143


>gi|237726665|ref|ZP_04557146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435191|gb|EEO45268.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1441

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+VD +  +R     +     + + EA +  +  E    E LP+ ++ D  M  +   
Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLE-LPDLVLSDVMMPCMDGI 1232

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  V++    + +    L  +   +  I G   GA+ ++ KPF+   LR  +  L + 
Sbjct: 1233 ELLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLLKQ 1292

Query: 121  QKS 123
            ++ 
Sbjct: 1293 REM 1295


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A    +A    E+    + +++D  M     +
Sbjct: 5   RVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHY-HLVILDVMMPKIDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 64  EVCRRMRNH---TNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R++     +  GF V  A S  EA +   K   P+ +V+D  +  +  F
Sbjct: 11  TIVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTD-PDLIVLDVMLPDIDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 70  TVTRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 129

Query: 123 SKDEN 127
            + E+
Sbjct: 130 EQVED 134


>gi|262409757|ref|ZP_06086294.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262352374|gb|EEZ01477.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1321

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     L  +  ++V   ++  +A     +E  P+ ++ D  M  +  
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A V+     + + V  L    D + M+ G   GA++++ KPF+   LR  +R +  
Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186

Query: 120  MQKSKDE 126
             +     
Sbjct: 1187 NRALLRR 1193


>gi|237717798|ref|ZP_04548279.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452897|gb|EEO58688.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1321

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     L  +  ++V   ++  +A     +E  P+ ++ D  M  +  
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A V+     + + V  L    D + M+ G   GA++++ KPF+   LR  +R +  
Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186

Query: 120  MQKSKDE 126
             +     
Sbjct: 1187 NRALLKR 1193


>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
           raciborskii T3]
          Length = 272

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R++        G+ V  A     A E          EL  + LV+D  +
Sbjct: 42  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  + +  L  +      + G   GA+ +L KPF+   +    
Sbjct: 102 PQINGLDICRLLRHQ--GNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARC 159

Query: 115 RELPQMQK 122
           R L + Q+
Sbjct: 160 RALLRRQR 167


>gi|189467281|ref|ZP_03016066.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM
            17393]
 gi|189435545|gb|EDV04530.1| hypothetical protein BACINT_03667 [Bacteroides intestinalis DSM
            17393]
          Length = 1330

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +F   G+ V    +  EA     +E  P+ ++ D  M  +  
Sbjct: 1078 QRILIVEDNDDLRNYLIDMFKT-GYNVQSCPNGKEAL-VIVREFDPDLVISDIMMPEMGG 1135

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G   GA++++ KPF+   L+  ++ +  
Sbjct: 1136 DELCSVIKGDLEISHIPVILLTALGDEKNMLEGLEIGADAYITKPFSVGILKATVKNILA 1195

Query: 120  MQKSKDE 126
             +    +
Sbjct: 1196 NRTLLRQ 1202


>gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G +     +  EA     +    + +++D  M  +   
Sbjct: 4   RILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGK-IDLIILDIGMPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + + + +L    +    + G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  DVCRQIRK---TSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKR 119

Query: 121 QKSKDENQFLDAI 133
             ++ E +   AI
Sbjct: 120 SGNEAEPERRRAI 132


>gi|167580218|ref|ZP_02373092.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           TXDOH]
 gi|167618327|ref|ZP_02386958.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           Bt4]
 gi|257139875|ref|ZP_05588137.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
           E264]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119

Query: 120 MQK 122
            ++
Sbjct: 120 RRR 122


>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 227

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 9/136 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD    +R++      + G+ V++A +  +A +  +  +  +  ++D  M  + 
Sbjct: 1   MASVLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIID-NMSIDITILDVMMADMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L  +      + G  AGA+ +L KPFN   L   ++   
Sbjct: 60  GITLCMEIRKK---SNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQL 116

Query: 119 QMQK---SKDENQFLD 131
           +  K   ++ ++  L+
Sbjct: 117 RRYKDFNNQKQSNILE 132


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+++    +  + ++     G+ V  A    E     + E  P+ +++D  +     +E
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQID-ERTPDLILLDWMLPKLSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR      ++ +  L    +    + G   GA+ ++ KPF+   L   +R + +  
Sbjct: 64  VCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|309791478|ref|ZP_07685982.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308226475|gb|EFO80199.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 407

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD + +  K+        G+ +  AT+   A +       P+  ++D  M      
Sbjct: 7   RILIVDDTPLNLKMVSAALASGGYQIETATTGHMALDRAVT-FRPDLFILDVMMPDIDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+M       +  L      E+ + G  AGA+ ++ KPF    L+  ++ L + 
Sbjct: 66  EVCRRLRRMTTFAQHPILMLTANDTLEERVRGLEAGADDYMSKPFQPIELQARVKALLRR 125


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         +         +A     +   PN L++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECYDTKIVNDGEQAL-IAFEHYKPNMLLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  + +    + G   GA+ ++LKPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAK---SDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    A     A+   +  +LP+ +++D  + 
Sbjct: 1   MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L      R       V +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
 gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    VR+  +      G +V  A S     E   +   P+ +V+D  + G+ 
Sbjct: 1   MAEVLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRH-RPDLVVLDLMLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R    G  V +  L    D   ++AG  AGA+ ++ KP     L   +R + + 
Sbjct: 60  GFETCRRMRAAGP-VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRR 118

Query: 121 QKSKDEN 127
              +  +
Sbjct: 119 AAVERPD 125


>gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
 gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
           [Synechococcus sp. PCC 7335]
          Length = 617

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +     V   L    G+ V ++++  EA     +   P  +++D  M  +   
Sbjct: 22  RILIVDDTPTNLFVLSKLLTSAGYEVIQSSNGLEAL-MLAQSHQPALILLDIMMPDMDGH 80

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +     + V +L         I   R+GA  ++ KPF  E +   ++   ++
Sbjct: 81  EVCRRLRTVSATAHIPVIFLSALDAPLNKIQAFRSGAADYVTKPFQTEEVIARVQLQIEL 140

Query: 121 QKSKDENQFLD 131
           + ++   + ++
Sbjct: 141 RLARKRQEQIN 151


>gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria
           sp. TM1040]
 gi|99039007|gb|ABF65619.1| Phosphoserine phosphatase rsbU [Ruegeria sp. TM1040]
          Length = 423

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA S  +A + C  +  P+ ++ D  M G+  
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADP-PDLILSDWMMPGMNG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           +EF    R     T  +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 78  IEFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 138 ILRMQRELFEKNRI 151


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A +  +A         P+  ++D  M G+  F
Sbjct: 8   KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAAT-YKPDAFILDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D    +L  +   E  I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 67  TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 126

Query: 123 SKDENQ 128
           S+DE +
Sbjct: 127 SEDEQE 132


>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +          A    + E  PN +++D  + G+  
Sbjct: 5   QRILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFD-EFKPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         V  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAKSG---TPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIR 120

Query: 120 MQKS 123
              S
Sbjct: 121 RYNS 124


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK   P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    + ++    F    F V       EA     +E +P+ +++D  +E    +
Sbjct: 5   RMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEAL-LLAQENMPDIVLLDWMVESLSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+M    +V +  L    + E  + G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123

Query: 121 QKSKDENQFL 130
            +     + L
Sbjct: 124 VRPALAGETL 133


>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++     ++ G+   +A    EA            L++D  M  + 
Sbjct: 1   MK-ILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKD 125
            K + 
Sbjct: 119 TKMQA 123


>gi|307153190|ref|YP_003888574.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306983418|gb|ADN15299.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 589

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R++   L     F V EA    +  E      LP+ ++ D  M    
Sbjct: 1   MSKILVIEDELSIRELINELLTLADFEVVEAEDGQQGIEQALS-TLPDLILCDIMMPYKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  ++  P    +   +L  +     +  G   GA+ +L KPF  + L   +    
Sbjct: 60  GYEVLQELQCHPETESIPFIFLTAKGTKFDIRQGMNLGADDYLTKPFTEDELLQTINIRL 119

Query: 119 QMQKSKDENQFLD 131
           + + S ++   L+
Sbjct: 120 KKRFSIEQRYALE 132


>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD    +R++ +    + G   V EA+   EA    E ++  + +V+D  M  +
Sbjct: 1   MAKILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVME-QVSVDLVVMDIMMPNM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      + V  L  + +  +++ G   G + +L+KPF    L   ++ L
Sbjct: 60  DGWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKAL 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LKRYQ 121


>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 246

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    + G+ V       +  +      L N +V+D  + G    
Sbjct: 13  RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQ-MDKALSRELYNLMVLDLMLPGEDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G  AGA+ +L KPFN   L   ++ + + Q
Sbjct: 72  SICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQ 130


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A++  E  +       P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTART-FRPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D  V +L  +   E  I+G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 73  GLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 130


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK   P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|218262520|ref|ZP_03476947.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223331|gb|EEC95981.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii
           DSM 18315]
          Length = 963

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            ++LL D +  V +          ++V +A +  EA    E E  P+ ++ D  M  +  
Sbjct: 712 QTILLADDNQEVLQYLEQQL-CLDYVVVKAFNGKEALAMIE-ESYPHIVISDVMMPEMNG 769

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +++      + V  L  +    ++  G  AGA+ +++KPF    L+  +R +  
Sbjct: 770 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNILS 829

Query: 120 MQKSKDEN 127
           +++     
Sbjct: 830 LREKMKTM 837


>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 248

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            S+L+ D    +R++     +  G+ V+ A    EA +    +  P+ +++D  M     
Sbjct: 13  QSILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQC-PDLIILDVMMPKLDG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    + V +  L    + +  I G   GA+ +++KPF+ + L   +R + +
Sbjct: 72  YGVCQAVRK---TSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILR 128

Query: 120 M 120
            
Sbjct: 129 R 129


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    GF    AT+  EA E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116

Query: 119 QMQKSKDEN--QFLDA 132
           +     ++   Q L+A
Sbjct: 117 RRGGEAEDMLPQVLEA 132


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A++  E  +       P+ +++D  M G+  F
Sbjct: 9   RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTART-FRPDAVILDVMMPGMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D  V +L  +   E  I+G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 68  GLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125


>gi|332879261|ref|ZP_08446958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682681|gb|EGJ55581.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1414

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+V+     R           F V EA    E  E   +  LP+ +V D  M  +  
Sbjct: 1156 KKILVVEDHDEFRHFLMEQLQK-DFCVVEARDGVEG-EQAARTELPDLIVSDLMMPRMDG 1213

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++     + +    L      +  I G  AGA+S++ KPFN E L+  +R+L +
Sbjct: 1214 MELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIE 1273

Query: 120  MQKSKDEN 127
             ++ + + 
Sbjct: 1274 QKERRQKM 1281


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        GF V    +  +      +E  P+ +V+D  +  +  F
Sbjct: 5   RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEE-PDLIVLDVMLPDMNGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    + +L  + + E  I G  AG + ++ KPF+ + +   ++ + +   
Sbjct: 64  SVTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTM 123

Query: 123 SKDENQFL 130
             DE   +
Sbjct: 124 QADEESII 131


>gi|288929443|ref|ZP_06423288.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288329545|gb|EFC68131.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 963

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D +  V        +D  + +  A +  +     E +++P+ +V D  M G   L
Sbjct: 712 RVLVIDDNVDVAAFIGSQLSDK-YAIIYAHNGRDGLNKAE-QMVPDVIVTDLMMPGVDGL 769

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R   + + + +  +  ++     + G  AGA+++L KPFNR+ LR  + +L + 
Sbjct: 770 EVCRRIRANEVTSHIPIIVVTAKITEADRVKGLEAGADAYLAKPFNRDELRMRVEKLLEQ 829

Query: 121 QKSKDE 126
           ++   E
Sbjct: 830 RRLLRE 835


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLE-EKEFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1559

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R     L  +  + +        A     +   P+ ++ D  M G+  F
Sbjct: 638 RVLLADDNADMRDYVMRLLREH-YDIAAVADGQAALALV-RHWKPDLVLADIMMPGLDGF 695

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P    + V  L      E    G  AGA+ +L+KPF+   L   ++    +
Sbjct: 696 ELLQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHL 755

Query: 121 QKSKDENQ 128
            + + + +
Sbjct: 756 AELRRKAE 763



 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              +LLV+     R     L    GF V  A S  EAR     E   + L+ D  +     
Sbjct: 1439 RRVLLVEDHAPTRSALESLLVRRGFSVTAAASATEARALAASEH-FDLLISDIGLPDGSG 1497

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             + +A  R+           L      E ++   RAG    L KP   + L  A+  L
Sbjct: 1498 YDLMAEFRERYGLVG---IALTGYGMEEDVMRSRRAGFKMHLTKPVRIQHLDQALATL 1552


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    V  + ++     G+ V  A+   EA +  E E  P+ +V+D  +     
Sbjct: 3   KKILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEK-PDLIVLDVMLPKLDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  L     +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 61  IEVCKQLRQQKLMF--PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 118

Query: 120 MQKSKD 125
             +   
Sbjct: 119 RSEMAA 124


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    V ++        G+ V  A    EA E   +E  P+ LV+D  +  +  F
Sbjct: 27  TILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHRE-QPDLLVLDVMLPRLDGF 85

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ ++ KPF+ + L   +  + + 
Sbjct: 86  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD   ++ K  R      G  V  A    EA E  + +   + +++D  +     
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEY-DLILLDIMLPKYTG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    +DV V  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQMIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    + +         G+ V  A +  +A +   +   P+ +V+D  +  + 
Sbjct: 1   MNRILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHP-PDLVVLDLGLPDLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   T V +  L      +  +    AGA+ ++ KPF  + L   +R + + 
Sbjct: 60  GV-EVIRGLRGWTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAVTRR 118

Query: 121 QKSKD 125
             + D
Sbjct: 119 HTTAD 123


>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++  +     G+ V  A     A E  +K   P  +++D  M     +
Sbjct: 8   KVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQK-FQPQLILLDIMMPNQDGV 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+ P   + F+ +L    +    +A    GA+ ++ KP     L   +    + 
Sbjct: 67  ETCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFRR 126

Query: 121 --QKSKDENQ 128
             +K KD N+
Sbjct: 127 DVKKQKDNNK 136


>gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4]
          Length = 234

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M  +L+V+ +  V  +    F   G+    AT   E     E      +++++D  + G+
Sbjct: 1   MK-ILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +   +  +V V  L  +      + G   GA+ ++ KPF+  TL   ++ + +
Sbjct: 60  DGITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRR 119

Query: 120 MQK 122
             +
Sbjct: 120 RYE 122


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    VR V        G  V  A     A         P+ +V+D  + G   LE
Sbjct: 34  VLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTP-PDVVVLDLMLPGLGGLE 92

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G    +  L    + +  + G   GA+ ++ KPF+   L   +  + +  
Sbjct: 93  VCRALRAD--GDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRT 150

Query: 122 KS 123
            +
Sbjct: 151 AA 152


>gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 235

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    +R+  R      G     A++  EA +  +     + +++D  M  
Sbjct: 1   MKDSRVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNE-IHLILMDVMMPK 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +      + +R+    ++V +  L  + +    I G   GA+ ++ KPFN   L   ++ 
Sbjct: 60  MDGIVTTSLIRE---FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKS 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|53718676|ref|YP_107662.1| putative two-component system, response regulator [Burkholderia
           pseudomallei K96243]
 gi|76812145|ref|YP_332663.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710b]
 gi|126441195|ref|YP_001058144.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126452418|ref|YP_001065379.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134281110|ref|ZP_01767819.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|167823237|ref|ZP_02454708.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 9]
 gi|167851424|ref|ZP_02476932.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           B7210]
 gi|167900223|ref|ZP_02487624.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           7894]
 gi|167916733|ref|ZP_02503824.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 112]
 gi|167918062|ref|ZP_02505153.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           BCC215]
 gi|217419788|ref|ZP_03451294.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226194482|ref|ZP_03790080.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237811364|ref|YP_002895815.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           MSHR346]
 gi|242317517|ref|ZP_04816533.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254181365|ref|ZP_04887962.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254190765|ref|ZP_04897272.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254196970|ref|ZP_04903394.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254260088|ref|ZP_04951142.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254298308|ref|ZP_04965760.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|52209090|emb|CAH35031.1| putative two-component system, response regulator [Burkholderia
           pseudomallei K96243]
 gi|76581598|gb|ABA51073.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710b]
 gi|126220688|gb|ABN84194.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226060|gb|ABN89600.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134247416|gb|EBA47501.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|157808251|gb|EDO85421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157938440|gb|EDO94110.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|169653713|gb|EDS86406.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184211903|gb|EDU08946.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217397092|gb|EEC37108.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225933567|gb|EEH29556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503023|gb|ACQ95341.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           MSHR346]
 gi|242140756|gb|EES27158.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254218777|gb|EET08161.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
 gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae 10810]
 gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2846]
 gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 231

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +R++     +   + V EA+    A    ++   P  +++D  + G   
Sbjct: 3   RKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++FI ++++      + +  L  +   E  IA   AGA+ ++ KPF+ + L   +  + +
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 MQKSKDEN 127
               +   
Sbjct: 121 RIYEQQSQ 128


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E   K+   + +++D  +  +  
Sbjct: 3   RKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKA-KDKKYDIILLDLMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LEVCQQIRE---FSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKS-KDENQFLDAI 133
              S  +E +   +I
Sbjct: 119 RAGSDHEEKEKAKSI 133


>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
 gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
          Length = 236

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA +   KE+ P  +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKV-KEVKPELIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKD 125
             +  +
Sbjct: 120 RSQIAN 125


>gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
 gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
          Length = 239

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRILTRESIHLIVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|219847767|ref|YP_002462200.1| response regulator receiver protein [Chloroflexus aggregans DSM
           9485]
 gi|219542026|gb|ACL23764.1| response regulator receiver protein [Chloroflexus aggregans DSM
           9485]
          Length = 390

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   +LL+VD    V ++   +  + G+ V  A S  EA +   K   P+ L+ D  + G
Sbjct: 1   MKPPTLLIVDDDDAVAEMIELMLRNAGYEVRRAASGEEALQQIFKSP-PDALICDVLLPG 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        VRQ PL   + +  L  + D    IAG  AGAN +L KPF    L + ++ 
Sbjct: 60  IDGYTLCKRVRQHPLTRMLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPPELVYRVKN 119

Query: 117 LPQM 120
           L   
Sbjct: 120 LLTR 123


>gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase
           domain [Syntrophus aciditrophicus SB]
          Length = 402

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D S  +R +        G+ + EA    +     +    P+ +++D  M G+
Sbjct: 1   MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKA-WKPDLILLDIVMPGI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   ++      D+ V +L    +    I G   G   ++ KPF+R  +   +   
Sbjct: 60  DGYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQ 119

Query: 118 PQMQKS 123
            +++  
Sbjct: 120 FKIRHL 125


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +V        GF V EA    +A E        + +++D  +  +  F
Sbjct: 2   RVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELF---PRADLIILDLMLPKLDGF 58

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      ++ +  L    + E+ + G   GA+ +++KPF+ + +   ++ L +   
Sbjct: 59  KVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAG 118

Query: 123 SKDEN 127
            K+E 
Sbjct: 119 LKEEL 123


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +    + G+ V  A +     E+       + +++D  +  + 
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDIS 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      V V  +    +    + G   GA+ +++KPF+ + +   ++ + 
Sbjct: 61  GWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAIL 117

Query: 119 QMQKSKDEN 127
                  E 
Sbjct: 118 SRTYGASEE 126


>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +  V      +  + V  A    +  +  E     + +++D  +  +   
Sbjct: 2   RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEA-FPYDLILLDVMLPKLDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V  L  +   E  + G   GA+ +++KPF+   L   +R L + 
Sbjct: 61  SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118


>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
 gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
          Length = 224

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +         +FG  V          +  + E   + L++D  M    
Sbjct: 1   MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEP-FDLLILDIIMPKIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQM     + V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLELCRLYRQMFGY-QIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRNK 122


>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 233

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+++    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   SILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L++D    +R + +      GF V  A S  E       E  P+ +++D  +  +  F 
Sbjct: 12  VLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSE-RPDLILLDVLLPDISGFD 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R      DV V YL         + G   G + ++ KPF+ E L   +R L +  K
Sbjct: 71  VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVK 129


>gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 248

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57
             +L+V+   ++R++      + G+ V  A+    A    +         + L++D  + 
Sbjct: 19  KQVLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLP 78

Query: 58  --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               L+    +R    G  + +  L  +      + G   GA+ +L KPF+   L    R
Sbjct: 79  QVNGLDLCRLLR--YRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCR 136

Query: 116 ELPQMQKS 123
            L + Q  
Sbjct: 137 ALIRRQHL 144


>gi|293369031|ref|ZP_06615630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292635903|gb|EFF54396.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1321

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     L  +  ++V   ++  +A     +E  P+ ++ D  M  +  
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A V+     + + V  L    D + M+ G   GA++++ KPF+   LR  +R +  
Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186

Query: 120  MQKSKDE 126
             +     
Sbjct: 1187 NRALLKR 1193


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R++        GF V  ATS   A E   +   P+ +V+D  +     F
Sbjct: 18  RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRH-RPDLIVLDVMLPDFDGF 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    GT   V +L         I G   G + ++ KPF+ E +   +  + +  +
Sbjct: 77  AVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR 136


>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 237

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
           L+V+    + ++ R +     F V  A    +  E    +   N +++D  +      E 
Sbjct: 9   LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPY-NLIILDLMLPTLDGWEI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R         +  L  + +    + G + GA+ +L KPF        +  L + 
Sbjct: 68  CRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRR 125


>gi|224536005|ref|ZP_03676544.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522372|gb|EEF91477.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1219

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+     F+   + +  A +  E  E   K+ +P+ ++ D  M  +    
Sbjct: 1072 ILVVEDNDDIREYIASSFSS-NYRIITAINGKEGLEQALKQ-IPDIIISDIMMPIMDGIE 1129

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1130 LCKQVKEDIRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLLESR 1189

Query: 122  KSKD 125
            K   
Sbjct: 1190 KKLA 1193


>gi|167561993|ref|ZP_02354909.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
           EO147]
 gi|167569245|ref|ZP_02362119.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
           C6786]
          Length = 241

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 60  DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|190015554|ref|YP_001967362.1| DNA-binding response regulator [Bacillus cereus]
 gi|217956894|ref|YP_002335990.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|116584461|gb|ABK00578.1| DNA-binding response regulator [Bacillus cereus]
 gi|217068621|gb|ACJ82869.1| DNA-binding response regulator [Bacillus cereus AH187]
          Length = 226

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+V+   I+R+   H F+  G+ V  A       +   E+E   + +++D  +  +
Sbjct: 1   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 61  DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117

Query: 118 PQMQKSKDENQ 128
            +    + + Q
Sbjct: 118 FKDTNQQVQYQ 128


>gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
          Length = 236

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA E    E+ P  +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKV-NEIQPELVVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKTIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDENQFLD 131
             K   E +  D
Sbjct: 120 RSKFASEIEKAD 131


>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +      + GF   EA    EA     +  + + +++D  M     
Sbjct: 4   RTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPV-DAVLLDVMMPKQDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     +DV + +L    +    + G + G + +++KPF+   L   +  + +  
Sbjct: 63  FAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRV 121

Query: 122 KSKDEN 127
           +   EN
Sbjct: 122 QRVREN 127


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  E+ L P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIER-LQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V YL    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 QQVED 131


>gi|220907975|ref|YP_002483286.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219864586|gb|ACL44925.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 381

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD S     + + +    G+ V  AT    A E       P+ +++D  M G+   E
Sbjct: 15  ILVVDDSADNLFLIQTILESEGYEVSTATHGKAALEQVV-NAPPDLVLLDVMMPGMNGYE 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  +        +  G   GA+ F+ KP   + L   +R L +++
Sbjct: 74  VTRRIRLNKSLPFMPILLITAHDRPR-VAEGLDLGADDFIRKPVEYDELLARVRSLLRLK 132

Query: 122 KSKDENQFLD 131
           +S DE   + 
Sbjct: 133 RSVDERDEIA 142


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         +A    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDT-YHPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +  +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRARA---NTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RYQA 124


>gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 396

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD     R++ R      G+          A         P+ +V+D  + G   LE
Sbjct: 5   VLIVDDDAETRRLLREYLQKQGYRATAVADGR-ALRAALGTARPDLIVLDLMLAGKDGLE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +++ +  L    +    + G   GA+ +++KPFN   L   ++ + +  
Sbjct: 64  LCRDLRTR---SNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRRA 120

Query: 122 KSKDEN 127
           +S  +N
Sbjct: 121 RSLPDN 126


>gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae Rd KW20]
 gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Haemophilus influenzae F3031]
 gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB)
           [Haemophilus influenzae Rd KW20]
 gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2866]
 gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3031]
          Length = 231

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +R++     +   + V EA+    A    ++   P  +++D  + G   
Sbjct: 3   RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++FI ++++      + +  L  +   E  IA   AGA+ ++ KPF+ + L   +  + +
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 MQKSKDEN 127
               +   
Sbjct: 121 RIYEQQSQ 128


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD      ++   L  + G+ V   +    A +   K   P+ +++D  M  +   
Sbjct: 12  SILIVDDMVDNLRLLSDLLTEQGYKVRGVSKGTMALKAA-KSFSPDLILLDIMMPEMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++      D+ + ++    D    +     G   ++ KPF  E +   ++   ++
Sbjct: 71  EVCQHLKAAENTCDIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLRL 130

Query: 121 QKSKD----ENQFLD 131
           ++ +     +N+ L+
Sbjct: 131 RELQKKLAQQNERLE 145



 Score =  124 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 3/119 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LL + +              G+ V  A +  EA +   +EL PN +++D  M  +    
Sbjct: 979  ILLAEDNEANISTIVEYLEAVGYRVATALNGVEAIQMA-RELKPNLVLMDIQMPAMDGLE 1037

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L               G N +L KP + + L  A+      
Sbjct: 1038 ATRQLRADVEFVQLPIIALTSLAMPGDREKCLEVGVNEYLAKPVSLKKLVEAIAFQLDR 1096



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+ S    +   H   + G       S+         ++ P+ +++D  +      +
Sbjct: 845 VLIVEDSAPAAEQIAHYLAELGINNSAIYSLGTGIVQEAIQINPDAIILDLQLPDRSGWD 904

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +A ++  P   ++ +  + +  +    +    A    +L+KPF+R   + A+R+L
Sbjct: 905 VLAQLKAEPRTQNIPILIVSVADEP---VRSPAASVYEYLVKPFSRHQFQLALRKL 957


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A +  +A         P+  ++D  M G+  F
Sbjct: 10  KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAAT-YKPDAFILDVMMPGMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D    +L  +   E  I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 69  TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 128

Query: 123 SKDENQ 128
           S+DE +
Sbjct: 129 SEDEQE 134


>gi|153867938|ref|ZP_01998111.1| two component system response regulator [Beggiatoa sp. SS]
 gi|152144742|gb|EDN71889.1| two component system response regulator [Beggiatoa sp. SS]
          Length = 258

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L VD   +  +V  +L +   + V       E  E  E+   P+ +++D  M  +   
Sbjct: 25  TILAVDDEPVNLQVVTNLLSLENYTVKTVMGGAETFELLEQGEKPDLILLDIMMPKMTGY 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T++ +  L  +     ++ G   GAN ++ KP ++  L   ++    +
Sbjct: 85  EVCQKLREQYSATELPIMLLTAKNQVSDLVEGLNVGANDYITKPVSKNELLARIKTHLNL 144

Query: 121 QKSKDENQFLDA 132
            + K EN  L+A
Sbjct: 145 SRLKTENIRLNA 156


>gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 238

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +          + V  A     A +    + LP+ +++D  +  + 
Sbjct: 3   MSRILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQ-LPDLVILDLGLPDID 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +   V  L    D    +     GA+ ++ KPF  + L   +R   + 
Sbjct: 62  GV-DVLRRIRETSQTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALRR 120

Query: 121 QKSKD 125
            + + 
Sbjct: 121 TQDES 125


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+V+    +  + R+     G+ V       EA     +E +P+ L++D  + G   
Sbjct: 3   TNILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRL-RESVPDLLILDWMLPGLSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   +R L +
Sbjct: 62  IELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLR 121

Query: 120 MQKSKDENQFLDA 132
             K +  +  L A
Sbjct: 122 RAKPEHISTLLRA 134


>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
 gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
          Length = 229

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R         + +L         I G   G + +++KPF+ + L+  ++  
Sbjct: 59  DGFQVCQKIRNK---VSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAH 115

Query: 118 PQMQK 122
            + +K
Sbjct: 116 LRREK 120


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F     ++  +A    E    PN +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFET-YQPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ +++KPF+ + +   +R + +
Sbjct: 64  YQVCRELRAK---SQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|86609393|ref|YP_478155.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557935|gb|ABD02892.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 121

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ S   R++   L  + GF V       EA E  ++   P+ +V+D  M  + 
Sbjct: 1   MSRVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNK-PDLIVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  PL     +     + +      G R GA++++ KPF  + L   +++L 
Sbjct: 60  GYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E       P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFREKE--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K+         + V  A +  EA ++ +     + L++D  M  + 
Sbjct: 1   MK-ILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEY-DLLIVDIMMPEMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G+ V V +L      +  + G  +G + +L+KPF  + L   +R L + 
Sbjct: 59  GLTLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRR 118

Query: 121 QKSKDENQ 128
             ++   +
Sbjct: 119 SNAQQTAR 126


>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    V  V R  F   GF V E  S  +A      E   + L++D  + G+ 
Sbjct: 1   MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETY-DLLILDIGLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +    G +  V  L    D    + G   GA+ +++KPF+   L   +R L + 
Sbjct: 60  GFGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRR 119

Query: 121 QKSKDENQF 129
                  + 
Sbjct: 120 TAEASRLRQ 128


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+          + V  A     A E    +   + +V+D  +     F
Sbjct: 2   RVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADP-FDLIVLDLMLPEKDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    V  L  + + +  + G   GA+ +L KPF+   L   +R L +   
Sbjct: 61  TVLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120

Query: 123 SK 124
            +
Sbjct: 121 EQ 122


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++        GF V        A     +E   + +++D  +    
Sbjct: 1   MPRILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENY-DLVILDIMLPKFD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ V  +      E  + G  AGA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GMKVCRKIRE---TKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVL 116

Query: 119 QMQKSKD 125
           +  + K+
Sbjct: 117 RRYRKKE 123


>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 255

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          +     G+    A +  EA E  E E+  + +++D  + G+ 
Sbjct: 21  MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYE-EMEFDLVLLDLMLPGIS 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R+M     V +  +  +     +I G   GA+ ++ KP++   L   +  + + 
Sbjct: 80  GTTLC-RRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRR 138


>gi|167040684|ref|YP_001663669.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter sp. X514]
 gi|166854924|gb|ABY93333.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter sp. X514]
          Length = 318

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD + + RK+ + +  + G+ V EA    EA +   K  LP+ +++D  M G+  
Sbjct: 12  RNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-KNKLPDMVILDIVMPGMTG 70

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  +  +R+      + +  L  + +FE+ I G   GA+ +L+KPFN + L F +  L Q
Sbjct: 71  FDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNNLFQ 130

Query: 120 MQK 122
             +
Sbjct: 131 RIE 133


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+ D +  + K+ R      GF V  A +  EA +  E +  P  +++D  M     
Sbjct: 3   KNILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFE-QYNPQIILLDIMMPIFDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     ++  +  +    +    I G  +GA+ +++KPF+   +   ++ + +
Sbjct: 62  MEVCKLIRLK---SNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFR 118

Query: 120 MQKSKDENQ 128
              +   N+
Sbjct: 119 RITAHKNNE 127


>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 226

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    D GF V  A +     E  +++  P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQT-PDLVITDIMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R  P  + + V +L      +  I G  AG +++L KPF+ + L   ++ + + +
Sbjct: 64  FLQQLRDDPRYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNILRQR 123

Query: 122 KSKDENQ 128
            ++  ++
Sbjct: 124 TNQQSSE 130


>gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 360

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++   + +  G+    ATS  +A E       P+ +++D  M  +    
Sbjct: 55  ILVVDDLSKNLQLVVDILDHSGYATTFATSGQQAFERVRTAH-PDLILLDLMMPEMNGLQ 113

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ + +L    +   ++   + GA  ++ KPF    L   ++   +++
Sbjct: 114 VCEKLKSNQEYQEIPIIFLTASDEEGDLLEAFKLGAVDYVTKPFRAAELLARVKNHLELK 173

Query: 122 KSKDENQ 128
           +++DE +
Sbjct: 174 RTRDELK 180


>gi|291571978|dbj|BAI94250.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 344

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           ++VD + I R +        G+ V  A++  EA +      L + +++D  M  +     
Sbjct: 1   MIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPL-DLVLLDIMMPQMNGYQV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +  ++       + V  +    D + ++     GA  +L KPFN   LR  +    + ++
Sbjct: 60  LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKKR 119

Query: 123 SKDENQ 128
            +D+ Q
Sbjct: 120 LRDQEQ 125


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
          Length = 247

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 22  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-RETRPDAVILDVMMPGMDGF 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 81  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138


>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 226

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ D    +R V R      GF V EA     A E  E  L P+ +++D  M  +    
Sbjct: 2   ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAES-LRPDLIILDIGMPEMDGLE 60

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +   +DV + +L    D    + G   GA+ ++ KPF+   L   +R + +    
Sbjct: 61  VC-RALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSNG 119

Query: 124 KDENQ 128
           +   Q
Sbjct: 120 EVAEQ 124


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  E E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVE-EYNPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDE 126
               +
Sbjct: 121 DLTQK 125


>gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 245

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    +         +FG  V             ++E   + +++D  M    
Sbjct: 22  MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEP-FDLVILDIIMPKIN 80

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQM       V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 81  GLELCHLYRQMFGY-QAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 139

Query: 119 QMQKSKDENQF 129
           +  K    NQ 
Sbjct: 140 RRNKETVTNQL 150


>gi|320160493|ref|YP_004173717.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
 gi|319994346|dbj|BAJ63117.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
          Length = 363

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   +VR     L    G+   EA+   +A +   +   P+ ++ D  M  V 
Sbjct: 1   MTRILVVEDEEMVRANIVDLLEAEGYETQEASDGEQALQLIWQNP-PDLILCDVRMPRVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +A + Q P    +   +L   V+ E    G   GA+ ++ KPF R+ L  A++   
Sbjct: 60  GFTFLARISQEPRLRAIPFIFLTARVEREDQRLGMNLGADDYITKPFTRKDLLTAVQRRL 119

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 120 EKHRHIGE 127


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M+ LL+++    +R   R L  + G+ + EA    E  +  +     + L+ID  M    
Sbjct: 1   MNKLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDST--FDLLIIDIMMPNIS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +R+    + V + +L  +      +    AG + +L+KPF+   L   ++ L 
Sbjct: 59  GIDVCRKIREK---SYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALI 115

Query: 119 QMQKSKD 125
           +  +  D
Sbjct: 116 RRCRVYD 122


>gi|256751275|ref|ZP_05492155.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|307266238|ref|ZP_07547780.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|320115595|ref|YP_004185754.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|326390556|ref|ZP_08212112.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749830|gb|EEU62854.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|306918768|gb|EFN49000.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|319928686|gb|ADV79371.1| diguanylate cyclase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|325993381|gb|EGD51817.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 310

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+VD + + RK+ + +  + G+ V EA    EA +   +  LP+ +++D  M G
Sbjct: 1   MKGRNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-RNKLPDMVILDIVMPG 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F  +  +R+      + +  L  + +FE+ I G   GA+ +L+KPFN + L F +  
Sbjct: 60  MNGFDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNN 119

Query: 117 LPQMQK 122
           L Q  +
Sbjct: 120 LFQRIE 125


>gi|224370414|ref|YP_002604578.1| two-component transcriptional regulatory protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223693131|gb|ACN16414.1| two-component transcriptional regulatory protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 368

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++   L    G+ V    +   A E  EK + P+ +++D  M G+   
Sbjct: 9   TILVVDDEPRNLRLMEALLIPMGYRVQLVENGEAALELLEK-ISPDVILLDVMMPGMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+       V +  +    +    +    AGA+ FL KP ++  L   +R L ++
Sbjct: 68  EVARQVKSREKTRSVPIVMVTALREVTDRVKALEAGADDFLTKPVDKTELTARVRSLVKV 127

Query: 121 QKSKDE----NQFLDA 132
           +   D      + L+A
Sbjct: 128 KAYHDHMTNYQKELEA 143


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V       EA E  +    P+ +++D  +  V 
Sbjct: 1   MTRVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN--PDLVLLDLGLPKVD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + V  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 59  GLEVCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 118


>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +RK+ +      GF V EA+   EA E   +  + + +++D  +    
Sbjct: 1   MK-ILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     D  V  L    + +  I G   GA+ +++KP + + +   ++ + 
Sbjct: 59  GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115

Query: 119 QMQKSKDENQFL 130
           +  K    ++ L
Sbjct: 116 KRSKKSSSDEIL 127


>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
 gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
          Length = 236

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD   ++           G+ VF A    EA E   K     ++++D  + G+  
Sbjct: 7   KNVLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRK-YPIMFVILDLMLPGMTG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V V  L  +   E ++ G   GA+ ++ KPF+ + L   M  + +
Sbjct: 66  EEICQAIRRQSR---VPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|27363525|ref|NP_759053.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6]
 gi|37679274|ref|NP_933883.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016]
 gi|27359641|gb|AAO08580.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6]
 gi|37198017|dbj|BAC93854.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016]
          Length = 242

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++     +  G+ V       + + +  +   P  +++D  + G   
Sbjct: 5   TRILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    +    I G   GA+ ++ KPFN   L   ++ + +
Sbjct: 65  FSLCQFMRRE---STVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLR 121

Query: 120 MQKSKDE 126
                 E
Sbjct: 122 RVHVTQE 128


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +        GF V  A +  +A +   K   P+ +++D  +  +  
Sbjct: 6   TRVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTH-PDLVILDVMLPDIDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R    G    V +L      E  + G   G + ++ KPF+   L   +  + +  
Sbjct: 65  FEVARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRT 124

Query: 122 K 122
           +
Sbjct: 125 R 125


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +          + V       +  +        + +++D  +    
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF+V    +  +A +        + +V+D  + G    
Sbjct: 7   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQA-DRLLTRENFSLMVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + V  L  + D    I G   GA+ +L KPFN   L   +R + +  
Sbjct: 66  SICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRH 124


>gi|294810650|ref|ZP_06769299.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294442119|gb|EFG10937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1321

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     L  +  ++V   ++  +A     +E  P+ ++ D  M  +  
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A V+     + + V  L    D + M+ G   GA++++ KPF+   LR  +R +  
Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186

Query: 120  MQKSKDE 126
             +     
Sbjct: 1187 NRALLKR 1193


>gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 236

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    V  + +      G+ V  A     A      +  P+ +++D  +  +  
Sbjct: 3   QKILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDK-PDLILLDCMLPRMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      V +  +  + +    + G   GA+ ++ KPF+   +   ++   +
Sbjct: 62  VDVCKKIRQSSS---VPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLR 118

Query: 120 MQKSKDENQFL 130
                D+ Q +
Sbjct: 119 RMGFVDQEQAI 129


>gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
 gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
          Length = 1416

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+ D +  +R   + L  +  + V  A    +A    ++   P+ ++ D  M G   
Sbjct: 625 TRILVADDNADMRAYVQRLLGEQ-YEVSCAVDGYDALRAAKRS-RPDLILSDIMMPGLDG 682

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +  +  VR      DV V  L      E  + G RAGA+ +L+KPF+   L   +  L +
Sbjct: 683 IGLLQTVRGDEELRDVPVILLSARAGEEARVHGLRAGADDYLVKPFSARELVVRVGALLK 742

Query: 120 MQKSKDENQ-FLDAI 133
           +   + +++    A+
Sbjct: 743 ITAQRRKSEGRFRAL 757



 Score =  101 bits (252), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 3/114 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+VD +         L    G  V  A S  +A   C +   P   ++D  + G+   
Sbjct: 1301 RVLIVDDNVDAADSLSALLRLQGHTVEVAYSAEDAI-RCAEAFCPQVALLDIGLPGMSGY 1359

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            E    +R  P    + +  +        +     AG +  L+KP     L  ++
Sbjct: 1360 ELARTLRAKPRLAGMRLVAVTGYGQTNDVHTAHEAGFDEHLVKPVEPSALVRSL 1413


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F         +A         P+ +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLTKECFDTMMVHDGEKAL-IAYDTYHPSLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     ++V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIRAK---SNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RYQA 124


>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 241

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ +       F + EA+   EA E          +++D  +  +  
Sbjct: 3   KEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNY-ACILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  
Sbjct: 62  IEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120

Query: 122 KSKDENQ 128
           +S    Q
Sbjct: 121 QSTSAEQ 127


>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 238

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V  V R      G  V  +    +A    E+E  P+ +V+D  M G+    
Sbjct: 11  VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEP-PDLVVLDLMMPGLDGIE 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R       + V  L    D    +AG   GA+ ++ KPF+   L   +R + +    
Sbjct: 70  VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129

Query: 124 KDE 126
           +D 
Sbjct: 130 QDR 132


>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
 gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 224

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +         +FG  V          +  + E   + L++D  M    
Sbjct: 1   MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEP-FDLLILDIIMPKIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQM     + V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLELCRLYRQMFGY-QIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRNK 122


>gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
 gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
          Length = 239

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRLLTRESIHLIVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 240

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++        GF V  A    E R+       P+ +++D  M G   
Sbjct: 5   KQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHS-PDLIILDIMMPGDDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    D    + G   GA+ ++ KPF+   L+  ++ L +
Sbjct: 64  FTLCQQIRRD---SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLR 120

Query: 120 MQKSKDENQ 128
             + +   +
Sbjct: 121 RAEFRQPEK 129


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 73  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +      G++V        A      +   N +++D  +     +
Sbjct: 6   RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDY-NLVILDIMLPDTDGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R++   T++ +  L         + G R GA+ ++ KPF    L   ++   + 
Sbjct: 65  EVCRTIREI---TNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRR 121


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   +  +          + V  A+   E  E   +    + +++D ++  + 
Sbjct: 1   MK-ILVVEDDELTAQALVATLASQNYTVETASDGQEGWE-LTEAFAYDLILLDVTLPKLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L           G  AGA+ +++KPF  E L   +R L + 
Sbjct: 59  GITLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRR 118

Query: 121 QKSKDE 126
            +   +
Sbjct: 119 NQLTSQ 124



 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++VD    +  + R L   +G  +       +  E  E    P+ L++D  M      
Sbjct: 513 RVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLET-TSPDLLILDIEMPQISGT 571

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR     + + + +L    D E +      GA+ F+ KP     L   +    + 
Sbjct: 572 ELCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLER 631

Query: 121 QKSKDEN 127
            ++    
Sbjct: 632 IRAVKRE 638



 Score = 47.1 bits (112), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV---- 59
           LL+VD    + K        +GF +  AT++  AR        P+ ++++ ++       
Sbjct: 389 LLIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKI-GLKSPDLVLLEPAIFPTAAES 447

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L  +A +++      +         D    +  AR G ++FL K      +  A+ ++  
Sbjct: 448 LTLLAELKKHA--PPIPAIIFTERDDLTTRLEVARLGEHTFLPKSVPPSQILDAINQVLH 505

Query: 120 MQKSKD 125
               + 
Sbjct: 506 QVDREK 511


>gi|256842620|ref|ZP_05548121.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256735757|gb|EEU49090.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1321

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     L  +  ++V   ++  +A     +E  P+ ++ D  M  +  
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDAL-LVAREYNPDLILSDVMMPEMGG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A V+     + + V  L    D + M+ G   GA++++ KPF+   LR  +R +  
Sbjct: 1127 DELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILA 1186

Query: 120  MQKSKDE 126
             +     
Sbjct: 1187 NRALLRR 1193


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M S +L++D    +  + R      G+ V+ A +  E          P+ +++D  M  V
Sbjct: 1   MRSAILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSAD-PDLIILDVMMPKV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    R    G+ V V  L  + + E  + G   GA+ +L+KPF  E L   +R L +
Sbjct: 60  DGFEVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLR 119

Query: 120 MQKS 123
            + S
Sbjct: 120 RKDS 123


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +  +     GF V  A    EA E    E  P ++++D  +     
Sbjct: 3   KKVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFE-QPAFIILDLMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +RQ  +     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  VEVCKQLRQQKVM--TPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKS 123
             + 
Sbjct: 120 RTQL 123


>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
 gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +  +  GF V  A S  EA     +E  P+ +V+D  M     +
Sbjct: 7   TVLVVEDELAQREVLAYNLDAEGFRVSRAASGDEAL-LLVEEDRPDIIVLDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPATVGIRLE 136


>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 1514

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R   + L  D  ++V        A E  +++  P+ L+ D  M  +   
Sbjct: 649 RILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQ-RPDLLLTDIMMPRLNGL 706

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R      D+ +  L      E  I G +A A+ +L+KPF+   L   +    +M
Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766

Query: 121 QKSKDE 126
            + + E
Sbjct: 767 AQIRQE 772


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
          Length = 239

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 73  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA +  E  E        + +++D  M  + 
Sbjct: 1   MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELL--SNDIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKD 125
            +S  
Sbjct: 118 TQSSA 122


>gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 266

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    VR   R      G  V    +  E       E   + +V+D  + G+ 
Sbjct: 37  MPRVLLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARL-AEDPADVVVLDLMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R    G D+ +  L    D   ++AG  AGA+ +++KP     L   +R + + 
Sbjct: 96  GFEVCRRIRAAG-DLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLRR 154


>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R      G+ V  A    +A E    E  P  L++D  M  +   
Sbjct: 2   KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEH-PELLILDVMMPNMDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  EVCRTLR--SEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118

Query: 121 QKSKD 125
             ++ 
Sbjct: 119 AAAES 123


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-VQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D +  I G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 233

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++    + ++        G     A +  +A      ++LP+ +++D  + G   +
Sbjct: 4   NILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|34497033|ref|NP_901248.1| sensory box/GGDEF family protein [Chromobacterium violaceum ATCC
           12472]
 gi|34102890|gb|AAQ59254.1| probable sensory box/GGDEF family protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 712

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +   L +  G+ V  A S  EA +   K   P+ +++D SM G+    
Sbjct: 7   ILVVDDTMTALMMLVALLSTQGYQVSSAQSGAEALDLALKHP-PDLILLDFSMPGMDGLA 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ + +L    D +  + G  AGA  F++KPF R  L   +     + 
Sbjct: 66  VCRELKLNPRTRDIPILFLSSVSDSQTKVDGFAAGAVDFIIKPFERSELLARVNTHLDLA 125

Query: 122 KSKDENQFL 130
           + K     L
Sbjct: 126 RLKKRLSKL 134


>gi|29345677|ref|NP_809180.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337569|gb|AAO75374.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1370

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LLLV+ +  +  +   + +   + V  A    EA     K+   + ++ D  M  +    
Sbjct: 1124 LLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALN-VIKDNEIDIIISDVMMPEMDGLE 1181

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F   ++     + + +  L  +   E  I    AGA+ ++ KPF  + L   +      +
Sbjct: 1182 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1241

Query: 122  KSKDEN 127
            K+K E 
Sbjct: 1242 KNKQEE 1247


>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 227

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R      G+ V  A     A         P+ +++D  M G+   
Sbjct: 2   RVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINM-RRPDVVILDVLMPGLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G DV V  L         +AG  AGA+ +L+KPF  E L   +R L + 
Sbjct: 61  ETCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRR 118


>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 227

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    +RK  +      G+ +FEA S  E  E   +E LP+ +V+D  + G+
Sbjct: 1   MKTKVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRE-LPDIVVLDIMLPGI 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F            + +  L  + +    I G + G + +L KPFN   L   ++ + +
Sbjct: 60  DGFEVCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIER 119

Query: 120 MQKSKDENQ 128
             +  +EN+
Sbjct: 120 RLEIGEENE 128


>gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
 gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp.
           EuI1c]
          Length = 1389

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D +  +R     L    G  V        A +    E   + +V D  M G   L
Sbjct: 632 RVLVADDNADMRGYLTRLLRGAGHTVVAVNDGRAALDALRAEP-FDLVVSDVMMPGLDGL 690

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +A +R       V V  L      E  + G  AGA+ +L+KPF    L   +R   ++
Sbjct: 691 ELVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARVRANVEL 750

Query: 121 QKSKDENQF 129
            + + ++  
Sbjct: 751 ARLRGQHAR 759


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLIILDIMMPNMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 68  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124


>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 241

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA+   EA +          +++D  +  +    
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNY-ACILLDLMLPEMDGIE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 64  VASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 124 KDENQ 128
            +  Q
Sbjct: 123 ANSEQ 127


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++     ++ G+ V +A    EA          + L++D  M  + 
Sbjct: 1   MK-ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ + + 
Sbjct: 60  GM-EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 121 QKSKDENQFLDAI 133
            + +   +  D +
Sbjct: 119 SQMQLTKEEPDEL 131


>gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9]
 gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum SS9]
          Length = 261

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R + +   +   + V  A    E  E C ++   + +V+D  + G     
Sbjct: 16  LLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNE-MEQCLRDNSIDLIVLDLMLPGKDGLT 74

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++ + +++ V  L    +    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 75  LC-RELRVHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRR 130


>gi|253567663|ref|ZP_04845074.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841736|gb|EES69816.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1348

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LLLV+ +  +  +   + +   + V  A    EA     K+   + ++ D  M  +    
Sbjct: 1102 LLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALN-VIKDNEIDIIISDVMMPEMDGLE 1159

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F   ++     + + +  L  +   E  I    AGA+ ++ KPF  + L   +      +
Sbjct: 1160 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1219

Query: 122  KSKDEN 127
            K+K E 
Sbjct: 1220 KNKQEE 1225


>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 230

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    + ++        G+    A S  EA  + EK+    ++++D  M  + 
Sbjct: 1   MMNILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFK-FILLDIMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        ++ G + GA+ ++ KPF+ + L   +  + 
Sbjct: 60  GWETCRKIRS---FSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +     +  Q
Sbjct: 117 RRSNQHELIQ 126


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +  + R    D G+ +       +A    EK+ + + +++D  + GV  
Sbjct: 3   KTILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQ-VWDAVILDLMLPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   + V  +         + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 62  LEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQ 121

Query: 122 KSKDENQFLDA 132
           ++  +N  +DA
Sbjct: 122 EAMGQNLLMDA 132


>gi|254410095|ref|ZP_05023875.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183131|gb|EDX78115.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 372

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    VR+    L     F V  A   C   +    +  P+ ++ D  M    
Sbjct: 9   MKKILIIEDEETVRENLMELLEAEDFEVCGAGDGCAGLDLVP-QYQPDLILCDVMMPKLD 67

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+ P+   +   +L    D   +  G   GA+ ++ KPF+ + L  A+    
Sbjct: 68  GFGVLNTLRKNPVTATIPFMFLTARTDKTDLRQGMELGADDYITKPFSVDELLNAIASRL 127

Query: 119 QMQKSKDENQ 128
           Q Q   +E Q
Sbjct: 128 QKQAIIEEQQ 137


>gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1302

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+    +       F   G+ V  A +  E  E   KE   + +V D  M  +   
Sbjct: 1058 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERL-KEHTVSLIVSDWMMPVMDGA 1115

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   VR     + + +  L  + D +    G   GA++++ KPF+ + L   +R +  M
Sbjct: 1116 EFCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNMLDM 1175

Query: 121  QKSKDE 126
            ++   +
Sbjct: 1176 RRLLMQ 1181


>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 217

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +RKV +      GF V EA+   EA E   +  + + +++D  +    
Sbjct: 1   MK-ILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     D  V  L    + +  I G   GA+ +++KP + + +   ++ + 
Sbjct: 59  GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115

Query: 119 QMQKSKDENQFL 130
           +  K    N  L
Sbjct: 116 KRTKKPSSNDIL 127


>gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 236

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +R +        G+   +A +  EA     ++   + +++D  M     
Sbjct: 5   KTILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQN-IDLVILDVMMPKLNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +R+     ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   +
Sbjct: 64  IDTCLKIREE---REMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 223

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris
           marina MBIC11017]
 gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris
           marina MBIC11017]
          Length = 227

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    D GF V  A++     E   ++ +P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELL-QQRIPDLVISDIMMPEVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+A +R+ P    + + +L      +  I G  AG +++L KPF+ + L   +  L   +
Sbjct: 64  FLAQLREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLLTRK 123

Query: 122 KSKDEN 127
           ++KD N
Sbjct: 124 EAKDAN 129


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V       +     E+    + L++D  + GV  
Sbjct: 52  KRILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGW-DALILDLMLPGVDG 110

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 111 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 170

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 171 DALARDSRIDA 181


>gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
 gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
          Length = 243

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R++        G++V       +  +       P+ +V+D  M G   
Sbjct: 4   NKILVVDDDAKLRELLTRYLTQQGYIVETLPDPKD-LDRKLARNRPDLIVLDVMMPGEDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + V  L    +    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 63  LAVVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRH 122

Query: 122 KS 123
            +
Sbjct: 123 HA 124


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +  +     GF V  A    EA      E  P  +++D  +  +  
Sbjct: 3   RKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASE-QPALIILDLMLPKLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  L    D    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 62  VDVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRT 121

Query: 122 K 122
           +
Sbjct: 122 E 122


>gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 230

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ VF A++  EA     KE+ P+ +++D  M  +  
Sbjct: 6   QKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQA-KEVNPDLIILDVMMPQMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R MP     F+ +L    +    IAG   GA+ ++ KP     L   +  + +
Sbjct: 65  IEACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILR 124

Query: 120 MQKSKDE 126
              ++DE
Sbjct: 125 RNTAEDE 131


>gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +  R  F   G+ V  A       E        + +++D  + G+ 
Sbjct: 1   MPKILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGA-DIVLLDVMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +         G  + +  L  +     ++ G   GA+ +++KPF+   L   +R   + 
Sbjct: 60  GYSICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRR 119

Query: 121 QKSKDE 126
            +S+DE
Sbjct: 120 HRSEDE 125


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ R      G+ V EA    EA +   +E   + L++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIRESSK---VPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRR 121

Query: 121 QKSKDENQFLDA 132
               D    ++A
Sbjct: 122 TLGSDAGDVMEA 133


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 1307

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R   R +  D  + V   +    A +   +   P+ ++ D  M G+  F
Sbjct: 655 RILLADDNADMRMYVRRIL-DARWTVEAVSDGAAALDVARRSP-PDLVIADVMMPGLDGF 712

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P+   V V  L      E  + G  AGA+ +L+KPF+   L   +    Q+
Sbjct: 713 GLLRALRADPVTRCVPVIMLSARAGEESRVEGLAAGADDYLVKPFSARELIARVATHLQL 772

Query: 121 QKSKDENQF 129
            + +   + 
Sbjct: 773 GEHRRAAER 781



 Score = 97.2 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD +    ++        G+    A     A    E E  P+  ++D  +  +  
Sbjct: 1185 RRILLVDDNLDAVELLAESLGAMGYTTRVAPDGPSALRIAE-EFAPDVALLDIGLPVMDG 1243

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R+ P G  V +  +              AG  + L+KP   E L   + E
Sbjct: 1244 YELARRLREQPAGERVRLIAITGYGQEADFRRSEGAGFETHLVKPIQIERLTSLLEE 1300


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF    A     A    E+  + + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDV-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRA---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQKSKDE 126
           +      E
Sbjct: 117 RRGGEAAE 124


>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 250

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDES 55
           + +L+V+   ++R++      + G+ V  A     A          ++E   + L++D  
Sbjct: 19  NRILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLM 78

Query: 56  ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +     L+    +R    G  + +  L  +      + G   GA+ +L KPF+   L   
Sbjct: 79  LPQVNGLDLCRLIR--YKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIAR 136

Query: 114 MRELPQMQK 122
            R L +  +
Sbjct: 137 CRALLRRHR 145


>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 246

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++++ D    +  V R      G  V+ A +  EA     KE  P+ LV+D  M     L
Sbjct: 4   NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLW-KEHRPDLLVLDLMMPKVDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ     D  +  L    +    + G   GA+ ++ KPF+   L   +  + + 
Sbjct: 63  EVCDLIRQ---TDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRR 119

Query: 121 QKSKDE 126
              + E
Sbjct: 120 AGWRSE 125


>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 225

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIE-NRNFKFILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + ++     G+ V  A           +E  P+ +V+D  +  +  
Sbjct: 3   KKILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEK-PDLIVLDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ  L     +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKELRQKKLMY--PILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILR 119

Query: 120 MQK 122
             +
Sbjct: 120 RTQ 122


>gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 230

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + +    GF V EA +  +  E  +     + +++D  M  + 
Sbjct: 1   MAKILLVDDDVELTALLKDILELEGFDVVEANNGQQGLEKVDSS--IDLILLDVMMPVMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++       V  L  + D    I G   GA+ +L KPF+   L   MR + + 
Sbjct: 59  G-TEMLRRLRESHTTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLRR 117

Query: 121 QK 122
            +
Sbjct: 118 TQ 119


>gi|309790814|ref|ZP_07685358.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227101|gb|EFO80785.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 406

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD S I  K         G+ + EAT    A E    E LP+ L++D  M     
Sbjct: 3   QRILVVDDSPINIKAVALALEAIGYEILEATDGRMALEVA-AETLPDMLILDVQMPEFDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+ P      +  L       + + G  AGA+ ++ KPF  E L+  ++ L +
Sbjct: 62  YEVCRRLRRQPAFMTRPILMLSANNALHERVQGLEAGADDYMAKPFEAEELQARVKALLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|317052668|ref|YP_004113784.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316947752|gb|ADU67228.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 366

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++   ++R     L     + V +A    E      +    + ++ D  M  + 
Sbjct: 1   MRRILLIEDDPVLRHNMVELLTLENYDVDDAQDGEEGVRKALESHH-DLVLCDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P    +   +L  +VD E +  G   GA+ ++ KP   E L  A+    
Sbjct: 60  GYQVFEALKSHPRTASIPFLFLTAKVDKEDVRRGMVMGADDYIQKPAPIEELLQAIEVRL 119

Query: 119 QMQKSK--DENQFLDAI 133
           + ++ +   E Q  +A+
Sbjct: 120 RKKRLQLEQEQQRSEAL 136


>gi|254413389|ref|ZP_05027160.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180009|gb|EDX75002.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 403

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD       +        GF +F A     A +  E    P+ +++D  M G+  F
Sbjct: 10  KLLIVDDQPHNLGILFDFLTRSGFKIFVALDGESALQRTEV-TEPDLIILDVMMPGIDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P   D+ + ++    D    + G + GA  ++ KP ++E +   ++   ++
Sbjct: 69  ETCKRLKQNPSTQDIPIIFMTALSDTVDKVQGFKLGAVDYITKPIHQEEVLSRIQTHIKL 128

Query: 121 QKSKDENQ 128
              +++ Q
Sbjct: 129 YHLQNQLQ 136


>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
 gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
          Length = 233

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    +R + R           EA ++ +A      +  P+ +++D  + G
Sbjct: 1   MKNCSVLVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIII-DRRPDIVLLDWMLPG 59

Query: 59  V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E +  +++  L  ++ V  L  +   + +I G   GA+ ++ KPF    L   +R 
Sbjct: 60  GSGIELLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRA 119

Query: 117 LPQMQKSKDENQFLDA 132
           L +   +   ++ ++A
Sbjct: 120 LLRRSGAMPSSERIEA 135


>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
           Sunitezuoqi]
          Length = 232

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    + +    L    G+ V  A       E  +     + L++D  + G   L
Sbjct: 2   RILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSY-DLLILDWMLPGKTGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+   G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQQLRRQ--GKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118

Query: 121 QKSK 124
             S+
Sbjct: 119 SGSQ 122


>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  142 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    ++++        GF    A    EA          +  V+D  M  + 
Sbjct: 1   MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSH-QIDLAVVDVMMPVMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   V+++   + + V +L    D +  I G   G + +L KPF++  L   ++ + + 
Sbjct: 60  GF-DFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRR 118

Query: 121 QKSKDEN 127
              ++ N
Sbjct: 119 TYQRNRN 125


>gi|332527152|ref|ZP_08403227.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Rubrivivax benzoatilyticus JA2]
 gi|332111578|gb|EGJ11560.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Rubrivivax benzoatilyticus JA2]
          Length = 392

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      K+   +  D G+ V  A++   A    E+  LP+ +++D  M  +   
Sbjct: 13  TILIVDDEPANLKILATILGDKGYRVIAASNGETALRLAERPPLPSLILLDVMMPDMSGM 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P    + V  +           G +AGA+ ++ KPF+   L   +R     
Sbjct: 73  VVLEKLRENPATRAIPVVMVTALGKERDEETGLKAGASDYIKKPFSPLILLARVRSQLDA 132

Query: 121 QK----SKDENQF 129
            +     +DE Q 
Sbjct: 133 ARLRGLLRDELQR 145


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L++D   ++ K  +      G+ V  A    E  E   K    + +++D  +  + 
Sbjct: 1   MENILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKI-KNGNYDLVILDLMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +++ +  L  + +    I G   GA+ +L KPFN   L   +R L + 
Sbjct: 60  GLTLC-KEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRR 118


>gi|307718269|ref|YP_003873801.1| two-component regulatory system response regulator [Spirochaeta
           thermophila DSM 6192]
 gi|306531994|gb|ADN01528.1| two-component regulatory system response regulator [Spirochaeta
           thermophila DSM 6192]
          Length = 431

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +    ++   +  +  ++V  A S  EA    EK    + +++D  M  +  F
Sbjct: 10  RILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTP-FDLILLDIMMPEMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P   D+ + +L  + D E ++ G   G   +++KP++   L   ++    +
Sbjct: 68  EVCRRVRSNPKTKDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQLSL 127

Query: 121 QKSKDENQFLD 131
           ++ + + + L 
Sbjct: 128 REQQKKIEELS 138


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+           +    GF V        A    ++    + +++D  + G  
Sbjct: 1   MTRLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGA-DLILLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     + V V  L         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRTLRAR---STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVL 116

Query: 119 QMQKSKDE 126
           + +   +E
Sbjct: 117 RRRVETEE 124


>gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
 gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira
           maxima CS-328]
          Length = 222

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD     R          G+MV  AT+  EA E  EK   P+ +V D +M  +  F
Sbjct: 4   TLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKH-QPHLIVTDIAMPEMDGF 62

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P    + V +L      E+ I G + G +++L KPF  + L   +R L + 
Sbjct: 63  ELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALLER 122

Query: 121 QKSKD 125
            +  +
Sbjct: 123 SQLIE 127


>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLVD   I R+V   +  D GF V  A++  EA E  ++  + + +++D  M G+    
Sbjct: 729 VLLVDDEPINREVAAEILEDAGFDVTLASNGMEALERLQRHPV-DLVIMDIQMPGMDGLT 787

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQMP    + +  +      E       AG N+F+ KP + E L   +      
Sbjct: 788 TTRRIRQMPDRAHLPIIAMTANAFAEDETECLNAGMNAFIPKPIDPERLYRIVLSCLDR 846


>gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus
           ATCC 19977]
 gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium
           abscessus]
          Length = 224

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R   +  G+ V  A+S   A      E  P  +++D  +  + 
Sbjct: 1   MTRVLVVDDEPQILRAMRINLSARGYEVVTASSGAGAL-RAAAETQPEVVILDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   TDV V  L    D    +    AGA+ ++ KPF  +     +R   + 
Sbjct: 60  G-TEVLAGLRGWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRR 118


>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
 gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
          Length = 241

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA+   EA +          +++D  +  +    
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNY-ACILLDLMLPEMDGIE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 64  VASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122

Query: 124 KDENQ 128
            +  Q
Sbjct: 123 ANSEQ 127


>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    + ++        G+ V  A +  EA E     +    +++D  +  + 
Sbjct: 1   MSTILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMA-TTISLTCIILDLMLPDLS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  +      I G   GA+ +L+KPF+   L   +R + 
Sbjct: 60  GEEVCVQIRKESR---VPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVM 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|218886198|ref|YP_002435519.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757152|gb|ACL08051.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 391

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD +     +   L  D  + V  A S  +A         P+ +++D  M G+  
Sbjct: 13  RTVLVVDDTVDNLTLLSDLLKDT-YRVKVANSGEKALRILSSGSPPDLVLLDIMMPGMDG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  ++++P   DV V +L    + +    G   GA  ++ KP +   +   +R   Q
Sbjct: 72  YTVLRRLKELPGTADVPVIFLTALSEEDDERIGLELGAVDYITKPISPSIMLARVRTHLQ 131

Query: 120 MQKSK----DENQFLD 131
           ++ ++    D+N+FL+
Sbjct: 132 VKAARDFLKDKNEFLE 147


>gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R +     +  G+ V +A    +A      E  P  +++D +M G+ 
Sbjct: 1   MK-ILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAE-QPELVILDVNMPGLD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R   +   V V  L +    + +I G   GA+ +L KPF+  TL   +R L 
Sbjct: 59  GFEVCRRIRAQSI---VPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALL 115

Query: 119 QMQKSKD 125
           +    + 
Sbjct: 116 RRVGGER 122


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1131

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           SLLL D +  +R+    L     + +  A++   A E    E  P+ ++ D  M  +  F
Sbjct: 651 SLLLADDNRDMREYIERLLGSR-YRIRAASNGKRALEMA-TEDPPDLVLTDVMMPEMDGF 708

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R     + + +  L      E  I G + GA+ +L+KPF+   L   +    ++
Sbjct: 709 ELLAALRANSATSTIPIIVLSARAGEEAQIEGLQHGADDYLVKPFSARELVARVENNLRL 768

Query: 121 Q--KSKDENQFLDA 132
              + + E +  ++
Sbjct: 769 STFRRETEQRIRES 782


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
           ATCC 13950]
          Length = 239

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 73  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130


>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 1514

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R   + L  D  ++V        A E  +++  P+ L+ D  M  +   
Sbjct: 649 RILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQ-RPDLLLTDIMMPRLNGL 706

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R      D+ +  L      E  I G +A A+ +L+KPF+   L   +    +M
Sbjct: 707 ALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766

Query: 121 QKSKDE 126
            + + E
Sbjct: 767 AQIRQE 772


>gi|119484770|ref|ZP_01619252.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106]
 gi|119457588|gb|EAW38712.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106]
          Length = 455

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +   L    G+ +  A S  EA +   K   P+ +++D  M  +  F 
Sbjct: 8   ILIVDDEPANLILLEELLKSEGYEILLAASGIEALQLA-KTTSPDLVLLDVMMPEMDGFE 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+        V +L    D +  I G     + ++ KPFN   L   +  L Q+ 
Sbjct: 67  VCDSLRKDEQLKVTPVIFLTSLDDEQSQIKGLELMGDDYITKPFNSRLLLAKVSSLLQLN 126

Query: 122 KSKDENQFLDA 132
           + + +   +D+
Sbjct: 127 QMRTQTTQVDS 137


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     +  GF V  A +  +A     +E  P+ +V+D  +     +
Sbjct: 12  KILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTY-QEFDPDLVVLDVMLPDFDGY 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+D+ V +L  + D    + G  AGA+ ++ KPF+ E +   ++ + +   
Sbjct: 71  EVLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTT 130

Query: 123 SKDENQFL 130
             +E+  L
Sbjct: 131 PSEEDSAL 138


>gi|212703362|ref|ZP_03311490.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098]
 gi|212673208|gb|EEB33691.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098]
          Length = 234

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+LLV+ +  +           G+ +  A +     E        + +V+D  + G+   
Sbjct: 5   SVLLVEDNEDILANLYAYLEPLGYELDCARNGRTGLEMA-ASGQFDLVVLDIMLPGLDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+   G  V V  L         + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 64  SLCRALRE-EHGVQVPVIMLTARDTVADRVLGLDAGADDYLVKPFALRELEARIRALLRR 122

Query: 121 QKSKDENQ 128
            ++++  Q
Sbjct: 123 GRAQESAQ 130


>gi|48374222|gb|AAT41921.1| putative chemotaxis protein [Fremyella diplosiphon Fd33]
          Length = 121

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   R++   L    G  V  A+   EA E  +    P+ +V+D  M  + 
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTP-PDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
 gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 233

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+++    + ++        G     A +  +A+     ++LP+ +++D  + G   +
Sbjct: 4   SILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLI-SDVLPDLVLLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L    D +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  AFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    V KV        G+ V  A+   EA +   +E +P+ +V+D  +  +  F
Sbjct: 27  TILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHRE-IPDLVVLDVMLPKLDGF 85

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +   V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 86  AVCRRLRAESI---VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 142


>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 232

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 8   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 67  GLEVARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 126

Query: 121 QKSKDEN 127
             ++ + 
Sbjct: 127 GAAEPQQ 133


>gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 611

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++   +    G+ V +A +   A    +  ++P+ +++D  M  +    
Sbjct: 13  ILIVDDNPDNLRLLSKMLTKKGYHVRKALNGQMALTAAQA-VVPDLVLLDIMMPEMDGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H++  P   ++ V +L    D    +     G   ++ KPF    +   ++    ++
Sbjct: 72  VCTHLKADPKTAEIPVIFLSALSDAFDKVKAFAVGGADYVAKPFQLAEVLARVQNQLALR 131

Query: 122 KSKDENQFLD 131
            ++ E + L+
Sbjct: 132 AAELEKKQLN 141


>gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 224

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +      + GF   EA    EA     +  + + +++D  M     
Sbjct: 4   RTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPV-DAVLLDVMMPKQDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     +DV + +L    +    + G + G + +++KPF+   L   +  + +  
Sbjct: 63  FAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRV 121

Query: 122 KSKDEN 127
           +   EN
Sbjct: 122 QRVREN 127


>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 232

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D   +V +     F++ GF    A +  EA E    +  P+ +V+D  M  +    
Sbjct: 7   ILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDN-PDLIVLDMMMPEMNGVD 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+M   ++V +  L  + +    +     GA+ ++ KPF+   +   ++ + + 
Sbjct: 66  VCREIRRM---SNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRR 121


>gi|300866841|ref|ZP_07111518.1| putative Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
 gi|300335151|emb|CBN56678.1| putative Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
          Length = 320

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            ++L+VD +    ++   +    G++V ++ +   A +   ++  P+ +++D +M  +  
Sbjct: 11  TNILIVDDNPDNLRLLSKILESQGYIVRKSLNGKMALQAAYRDP-PDLIILDINMPDMNG 69

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118
            E    +++     D+ + ++         +     GA  ++ KPF  + +   +R    
Sbjct: 70  YEVCQQLKESEATQDLPIIFISALDRVNDKVRAFEMGAVDYITKPFQEQEVLMRVRNQLL 129

Query: 119 ---QMQKSKDENQFLD 131
              Q  +   +NQ L+
Sbjct: 130 IQQQYHQLIKQNQLLE 145


>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 241

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R++ +       F + EA+   EA E   +      +++D  +  +
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDY-ACILLDLMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +      D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 60  DGIEMSSKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118

Query: 120 MQKSKDENQ 128
             ++    Q
Sbjct: 119 RTQTSKPEQ 127


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           +    GF    A +  +A    ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKALRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
           8106]
 gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
           8106]
          Length = 377

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD      ++     +D G+ V  A +   A     +   P+ +++D  M G    
Sbjct: 12  NILIVDDLPDNLRLLSETLSDRGYEVQCAINGKLAL-MAVQNAPPDLILLDIKMPGLDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A ++     +++ V +L    D    +   R G   ++ KPF  E +   +     +
Sbjct: 71  EVCAELKSQVSTSNIPVIFLSALDDVFDKVKAFRVGGVDYITKPFQVEEVLARVENQLTI 130

Query: 121 QKSKDEN 127
            + + + 
Sbjct: 131 CRLQKQL 137


>gi|86607343|ref|YP_476106.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555885|gb|ABD00843.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 121

 Score =  142 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ S   R++   L  + GF V       EA E  ++   P+ +V+D  M  + 
Sbjct: 1   MSRVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNK-PDLIVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  PL     +     + +      G R GA++++ KPF  + L   +++L 
Sbjct: 60  GYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADAYIAKPFQPQELVGTIKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 237

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ +    D GF +  A          E+    + L++D  + G+  
Sbjct: 5   KRILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGW-DALILDLMLPGIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 64  LEICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123

Query: 122 KSKDENQFLDA 132
           ++   N  LDA
Sbjct: 124 EAMSRNLRLDA 134


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA E  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLE-EKRFDLIILDVMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   +  K
Sbjct: 63  EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFK 121

Query: 123 SKDEN 127
             + N
Sbjct: 122 KYNTN 126


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  E E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVE-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDE 126
               +
Sbjct: 121 DLTQK 125


>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + +    +    G+ V  A +     E  ++    + L++D  +     L
Sbjct: 2   RILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNY-DLLILDWMLPQQSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +   ++R    G    V +L  +   +  +AG  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  QICQYLR--DQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRR 118


>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
 gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
           [Nodularia spumigena CCY9414]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA E  E + +P+ ++ D  M  +  
Sbjct: 20  KRLLLIDDDPNLILLVKDYLEFRGYEVNTAENGREALEILE-QDIPDMIICDVMMPEMDG 78

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ      + V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 79  YTFVEQVRQNERTGWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 138

Query: 120 MQKSKDENQ 128
                 E+Q
Sbjct: 139 QTTRWKEHQ 147


>gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
 gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_14]
          Length = 1353

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R+   +   D  F   EA +  EA E  +   + + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRRYLSNGLADL-FNTLEAGNGEEALEKLKDNEV-DVIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                +V+Q      + V  L  + D +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 120  MQKSKDE 126
             ++  D+
Sbjct: 1222 RRRMLDK 1228


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 123 SKDE 126
            K E
Sbjct: 126 GKAE 129


>gi|291566271|dbj|BAI88543.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 438

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD       +   L    G+    A S   A E   +   P+ +++D  M  +  F 
Sbjct: 8   ILLVDDEPANLVLLEDLLMAEGYNTTLAESGSRAIEIA-QNHRPDLVLLDVMMPDMNGFE 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+ P+     + +L    D E  + G +   + ++ KPFN + L   ++ + ++ 
Sbjct: 67  VCDRLRENPILQTTPIIFLTALDDEESRLMGLQTMGDDYITKPFNIKLLLAKIQNILKLN 126

Query: 122 KSKD 125
           K ++
Sbjct: 127 KMRN 130


>gi|237715359|ref|ZP_04545840.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405201|ref|ZP_06081751.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229444668|gb|EEO50459.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356076|gb|EEZ05166.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1384

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+++ +  + ++   L     + VF A +  E     E E   + +V D  M  +   
Sbjct: 1129 SVLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENED-IDLIVSDVMMPEMDGI 1186

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F  +V+     + + V  L  +   E        GA++F+ KPFN   L   +R L + 
Sbjct: 1187 EFCKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLLKY 1246

Query: 121  QK 122
            ++
Sbjct: 1247 KE 1248


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA E  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLE-EKRFDLIILDVMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   +  K
Sbjct: 63  EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFK 121

Query: 123 SKDEN 127
             + N
Sbjct: 122 KYNTN 126


>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           S+LLVD    +R+  +        F V  A++  +A +F +K   P+ ++ D  M     
Sbjct: 6   SILLVDDEPGIRESVQAYLEYGDEFQVQVASNAHQAWDFLQKNP-PDLVISDIMMPEVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R+      + V +L         I G  AG ++++ KPF+ E L   ++ L +
Sbjct: 65  YQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYISKPFDPEELEAIVKNLLE 124

Query: 120 MQKSKDE 126
            +K   +
Sbjct: 125 RRKVNSQ 131


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 9/136 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M    L+VD   ++ K      +  G+ V  A    EA    + E   + +++D  +   
Sbjct: 1   MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENY-DVVILDVMLPEY 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    VR+    ++V +  L  + D    I G   GA+ ++ KPFN   L+  ++ +
Sbjct: 60  TGLEVCQIVRE---FSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAV 116

Query: 118 PQM--QKSKDENQFLD 131
            +   Q+ + E + L+
Sbjct: 117 LRRSIQEKETEKKTLE 132


>gi|166368645|ref|YP_001660918.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166091018|dbj|BAG05726.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 378

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D   +++           + VF A+   E  +    ++ P  ++ D  M G+ 
Sbjct: 1   MVRILVIDDDGVIQTFLSRALQKE-YEVFVASDGEEGLKQA-GQIKPAMIICDWMMPGID 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  +  F   L         + G  AGA+ FL KP     LR  +R   
Sbjct: 59  GLEVCRQIKLNPQLSTTFFILLTSLGSVGDRVKGLDAGADDFLCKPIEINELRARVRAGM 118

Query: 119 QMQK----SKDENQFLD 131
           ++ +     + + Q L+
Sbjct: 119 RLHQLSHDLRAQKQLLE 135


>gi|126031093|pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D10a And D53e.
 gi|126031094|pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
           Active Double Mutant D10a And D53e
          Length = 127

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V++   +R++   +    GF   EA     A      E  P+ ++++  + G   
Sbjct: 3   RRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLEWMLPGGSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI H+++  +  D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
 gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
           Ex25]
          Length = 1111

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ +   +   E     E+E  P  L++D  M G+      
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 767

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++       S
Sbjct: 768 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL--TAS 825

Query: 124 KDENQFLD 131
           + E + ++
Sbjct: 826 QAEMRHME 833


>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
 gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
          Length = 247

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDY-DLILLDIMMPGKDGI 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G   G++ +++KPF+   +   ++ + + 
Sbjct: 74  EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 130


>gi|220906186|ref|YP_002481497.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219862797|gb|ACL43136.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 406

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD + I R +        G  V  + +  +A +  E +   + +++D  M  +  L
Sbjct: 175 KILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQS-FDLVLLDVIMPKMNGL 233

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  ++  P   D+ V  +    + E  +     GA  +L KPFN   L+  ++   + 
Sbjct: 234 ELLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTILLKARIKACLEK 293

Query: 121 QKSKDENQF 129
           +  +D+ + 
Sbjct: 294 KYLRDQERQ 302


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           ++VD    +R++     +  G+ V  A S  EA E   +   P+ +++D  +  +  F  
Sbjct: 1   MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTK-PDMIILDVMLPDIDGFTV 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R    G    V +L    D +  + G   G + ++ KPF+ E +   +R + +  + +
Sbjct: 60  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 119

Query: 125 DEN 127
            E+
Sbjct: 120 VED 122


>gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
 gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         G  V EA    EA E  +KE + + L++D  M  + 
Sbjct: 1   MAKILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESV-DLLIMDIMMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRATLKIREKH-NIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRR 118


>gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ +    +R+    +    G+ V  A    EA     +E   +  ++D  M G    
Sbjct: 5   RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEAL-RISEESSFDLALLDIMMPGCNGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+      + +  L  + +    + G   GA+ ++ KPF    LR  +  + + 
Sbjct: 64  DVCRELRRRD--PALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRR 121

Query: 121 QK 122
            +
Sbjct: 122 SR 123


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA E  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLE-EKRFDLIILDVMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   +  K
Sbjct: 63  EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFK 121

Query: 123 SKDEN 127
             + N
Sbjct: 122 KYNTN 126


>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
 gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 245

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFEVILAEDSK-ALNRIMLRDAVDLIVLDLMMPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 71  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRR 129


>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDY-DLILLDIMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V  L  + +    + G   G++ +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGIREK---KATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 121


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         F      +  +A    E    P  +++D  + G+  
Sbjct: 5   QKILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYET-YHPGLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         +  L  + +    + G   GA+ +++KPF+ + +   +R + +
Sbjct: 64  YQVCREIRAKSS---TPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLR 120

Query: 120 MQKSKDENQ 128
             +     +
Sbjct: 121 RYQPVKPEE 129


>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD     R V R   N  G+ V  A++  +A +  +K    + +++D  +  + 
Sbjct: 2   MVTVLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA---DVILLDLMLPEMS 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V +  +  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 59  GEDVCRKIRQHSS---VPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAIL 115

Query: 119 QMQKSK 124
           +   ++
Sbjct: 116 RRTGAE 121


>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 277

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 42  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 100

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 101 LEICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 160

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 161 DALARDSRVDA 171


>gi|319640566|ref|ZP_07995286.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A]
 gi|317387843|gb|EFV68702.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A]
          Length = 1350

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1100 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQA-RIPNIIVSDIMMPVMDGIE 1157

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1158 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1217

Query: 122  K 122
            K
Sbjct: 1218 K 1218


>gi|254882381|ref|ZP_05255091.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254835174|gb|EET15483.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1344

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  R  F D  + V  A    E  E  +   +PN +V D  M  +    
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQA-RIPNIIVSDIMMPVMDGIE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1152 LCKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211

Query: 122  K 122
            K
Sbjct: 1212 K 1212


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    GF V    +  +A    ++    + +++D  + G  
Sbjct: 1   MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGA-DLVLLDLQLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    + V V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQR---STVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 119 QMQKSKDEN 127
           + Q   +E 
Sbjct: 117 RRQGEPEEL 125


>gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
 gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +R++     +   + V EA+    A    ++   P  +++D  + G   
Sbjct: 3   RKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++FI ++++      + +  L  +   E  IA   AGA+ ++ KPF+ + L   +  + +
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 MQKSKDEN 127
               +   
Sbjct: 121 RIYEQQSQ 128


>gi|22299981|ref|NP_683228.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296166|dbj|BAC09990.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 163

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++++VD S  +R +   L  + G+ V EA    EA+E  + +  P+ +++D  M  + 
Sbjct: 44  MATIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQC-PDLVILDVVMPRMN 102

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++   +   V V     + +   +  G + G ++++ KPF+   L  ++++L 
Sbjct: 103 GYELCRWIKGEAVSQKVPVIMCTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLL 162


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +      L    GF V  A     A E  E E   + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKRLRM---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R    D G+ +  A          E+    + LV+D  + GV  
Sbjct: 5   KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNW-DALVLDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRT 123

Query: 122 KSKDENQFLDA 132
            +   N  +++
Sbjct: 124 DALARNARMES 134


>gi|295085367|emb|CBK66890.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1263

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +     + +    +  +A     +E  P+ ++ D  M  +  
Sbjct: 999  QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1056

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G   GA++++ KPF+   L+  ++ L  
Sbjct: 1057 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1116

Query: 120  MQKSKDE 126
             +    +
Sbjct: 1117 NRALLRQ 1123


>gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 253

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD    +R +        G+ V       E     +   + + +V+D  + G     
Sbjct: 7   LLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARV-DLIVLDLMLPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R         V  L    +    I G   GA+ +L KPF+   L   ++ + + 
Sbjct: 66  LCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRR 124


>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           +LLLVD    V +         GF +  A +  EA +   KE  P+ +V+D  +  +  +
Sbjct: 4   TLLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKA-KETNPSLVVLDWMLPEMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+    + V +  +  + +    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 63  DVCRELRK---TSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRR 119

Query: 121 QKSKDENQFL 130
            + +D  + L
Sbjct: 120 IEGQDNQEEL 129


>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+VD    +  +  +     G+ V  AT   +A      +     +++D  +  + 
Sbjct: 3   MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQS-FTCILLDLMLPKLD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  +  + D    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 62  GMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRR 121


>gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
 gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
           Ex25]
          Length = 1128

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           + D   +  +V        G+ +   +   E     E+E  P  L++D  M G+      
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEK-PELLLLDIMMPGMSGYQVC 784

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           + +R+     ++ +  L      E  + G  AGAN +L KPFN++ L   ++       S
Sbjct: 785 SELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHL--TAS 842

Query: 124 KDENQFLD 131
           + E + ++
Sbjct: 843 QAEMRHME 850


>gi|298490278|ref|YP_003720455.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232196|gb|ADI63332.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 374

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD +     + R L    G+ +   +    A +   +   P+ +++D  M G+   
Sbjct: 11  RILAVDDTRDNLILVRTLLESEGYKIDLVSDGATALQKVAQSP-PDLILLDVMMPGMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P    + +  +        ++ G  AGA+ F+ KPF+ + L   +R L ++
Sbjct: 70  EVTRRIRNCPDLNYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLRL 128

Query: 121 QKSKDENQFL 130
           + S DE Q +
Sbjct: 129 KHSIDEQQKM 138


>gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1]
 gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ +  A++  EA    +K + P+ +++D  M
Sbjct: 1   MKKKDIKILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKK-IKPHLIIMDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +       ++R+     +  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKV 119

Query: 115 RELPQMQKSKDENQFL 130
           + L +  KS+DEN  +
Sbjct: 120 KALLRRLKSEDENAQI 135


>gi|300726984|ref|ZP_07060404.1| putative histidine kinase [Prevotella bryantii B14]
 gi|299775707|gb|EFI72297.1| putative histidine kinase [Prevotella bryantii B14]
          Length = 1366

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 4/117 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +LLVD S   R+  R   +D  + V EA +   A E    E  P+ ++ D  M  +    
Sbjct: 1112 VLLVDDSDDFREFMREELSDH-YEVVEAENGKVALEKI-AEHRPHIILSDVMMPVMDGNE 1169

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F   ++  P   ++ V  L   +   + I G   GA+ ++ KPF+ + LR  M  L 
Sbjct: 1170 FCRLLKGNPATANIPVIMLTARLTMLQKIEGLEHGADDYITKPFSMDLLRLRMANLM 1226


>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
 gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   ++ ++     +D G+ V  A          E+    + L++D  + GV  
Sbjct: 4   KRILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGW-DALILDLMLPGVDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR M       +  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 63  LDICRRVRAM--TRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFR 120

Query: 120 MQKSKDENQFLDA 132
            Q++   N  L+A
Sbjct: 121 RQEAMGRNLMLEA 133


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF    A     A E        + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAAND-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|153838150|ref|ZP_01990817.1| two component transcriptional regulator, winged helix family
           [Vibrio parahaemolyticus AQ3810]
 gi|149748466|gb|EDM59325.1| two component transcriptional regulator, winged helix family
           [Vibrio parahaemolyticus AQ3810]
          Length = 226

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +     +       P+ +++D  M G   
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHH-PDLIILDIMMPGDDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLRKN---SDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQKSKD 125
             +S  
Sbjct: 120 RSQSTA 125


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +          + V       +  +        + +++D  +    
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLE-EKKFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
 gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LLLVD    +R++ +      G+++ EA    EA E     +  + +V+D  M G   
Sbjct: 5   QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKAL-HIDYDLIVLDLMMPGIDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  + +    + G   G + +++KPF+   +   ++ L +
Sbjct: 64  IEVCKQIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|294645151|ref|ZP_06722874.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294807005|ref|ZP_06765824.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292639482|gb|EFF57777.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294445704|gb|EFG14352.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1397

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+++ +  + ++   L     + VF A +  E     E E   + +V D  M  +   
Sbjct: 1142 SVLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENED-IDLIVSDVMMPEMDGI 1199

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F  +V+     + + V  L  +   E        GA++F+ KPFN   L   +R L + 
Sbjct: 1200 EFCKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLLKY 1259

Query: 121  QK 122
            ++
Sbjct: 1260 KE 1261


>gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R V R      GF V +A     A +   ++  P+ +++D  + G+ 
Sbjct: 1   MRKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDP-PDLVLLDVMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D +V  +    +    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GL-EVLRRLRAVSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRR 118

Query: 121 QK 122
            +
Sbjct: 119 DR 120


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 234

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD    +R++        G+ V  A    +A E C     P+ +++D  + G   +
Sbjct: 5   TILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALE-CAFSFNPDLVILDMMIPGLDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        + +L  +        G  AG + ++ KPF+   L   ++   + 
Sbjct: 64  EVCQALRKNLS---TPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRR 120

Query: 121 QKSKD-------ENQFL 130
            +  +       +N+ L
Sbjct: 121 NRILENSNYSNAQNKRL 137


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +++   +     G+ V  A     A +   +E  P  +++D  + G+  F
Sbjct: 4   KILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLA-REFQPEIILLDVMLPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     +  V  L    +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRQEM---NTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRR 119

Query: 121 QKS-KDENQFLDA 132
            +  ++E Q  + 
Sbjct: 120 VRMIREEMQKSEE 132


>gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612]
 gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ +      GF V        A E    ++ P+ +++D  + G  
Sbjct: 1   MKKILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIV-DIRPDLIILDLMLPGKD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR     + + V  L  + +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVL 119

Query: 119 QMQKS 123
           +  + 
Sbjct: 120 RRTEM 124


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    + +    L    GF V  A     A +    +   + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQD-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V  V R      G  V  +    +A    E+E  P+ +V+D  M G+    
Sbjct: 11  VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEP-PDLVVLDLMMPGLDGIE 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R       + V  L    D    +AG   GA+ ++ KPF+   L   +R + +    
Sbjct: 70  VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129

Query: 124 KDE 126
           +D 
Sbjct: 130 QDR 132


>gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 244

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ D    +R++ R      G+ V EA    EA    +     + +++D  M  +  + 
Sbjct: 11  ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGG-IDLVLLDIMMPRIDGY- 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +R++   + + V  +  +      I G   GA+ +L KPFN       +R   + 
Sbjct: 69  QVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRR 125


>gi|218245687|ref|YP_002371058.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|257058734|ref|YP_003136622.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
 gi|218166165|gb|ACK64902.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8801]
 gi|256588900|gb|ACU99786.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 8802]
          Length = 593

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++   +    G+ V    S   A    + +  P+ +++D  M  +   
Sbjct: 12  NILIVDDKPTNLRILSTMLTKQGYKVRAVVSGKMAITAAQNQP-PDLILLDIKMPELDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V +L    D    +   +AG   ++ KPF  E +   +     +
Sbjct: 71  RVCELLQAEEKTRHIPVIFLSALQDGGDKMKAFQAGGVDYITKPFQFEEVLARVSTHLAL 130

Query: 121 QKSKDENQFLDA 132
           Q ++ E + L+A
Sbjct: 131 QATRRELRQLNA 142


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 43  KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 101

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 102 LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 161

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 162 DALARDSRIDA 172


>gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483]
 gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483]
          Length = 1320

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++LLVD +  +    +       F +  AT+  EA    +++   + +V D  M     
Sbjct: 1069 KTILLVDDNPEILNYLKKELGKS-FNILTATNGKEALGMLQQQN-ISLVVSDVMMPEIDG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + +  L  +     +  G +AGA+ +++KPF   TL+  ++ +  
Sbjct: 1127 IELCKRIKTDHNLSHLPIILLTAKAMNLYIEEGFQAGADDYIVKPFKVSTLKIRIKNILN 1186

Query: 120  MQKSKDE 126
             Q+   +
Sbjct: 1187 RQEKMKK 1193


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ LV+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 63  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122

Query: 123 SKDENQFLD 131
            +D  + + 
Sbjct: 123 PEDAAESMA 131


>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 226

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD    +R++ +    + G   V EA+   EA    E ++  + +V+D  M  +
Sbjct: 1   MAKILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVME-QVSVDLVVMDIMMPNM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      + V  L  + +  +++ G   G + +L+KPF    L   ++ L
Sbjct: 60  DGWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKAL 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LKRYQ 121


>gi|299146270|ref|ZP_07039338.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298516761|gb|EFI40642.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1411

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLV+ +  +R   +     + + V EA +  +A E   KE  P+ +V D  M G+  
Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1207

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                A ++       + V  L        +  G  +GA+ +++KPFN + L   +  L  
Sbjct: 1208 LELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1267

Query: 120  MQKSKD 125
             ++   
Sbjct: 1268 QREKLK 1273


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      + G+  F AT   EA     KE  PN +++D  + G+  F
Sbjct: 5   KILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIA-KEEKPNLILLDLMIPGMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     +  +  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123


>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +    + + Q
Sbjct: 117 RRTNQRTQIQ 126


>gi|160883701|ref|ZP_02064704.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483]
 gi|156110786|gb|EDO12531.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483]
          Length = 1411

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLV+ +  +R   +     + + V EA +  +A E   KE  P+ +V D  M G+  
Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1207

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                A ++       + V  L        +  G  +GA+ +++KPFN + L   +  L  
Sbjct: 1208 LELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1267

Query: 120  MQKSKD 125
             ++   
Sbjct: 1268 QREKLK 1273


>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 60/135 (44%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L +D    +  +        GF     +S+ +A  + E+E + + +++D  M  + 
Sbjct: 1   MKTILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHV-DLVLLDIMMPEMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      V +  L  + +   ++ G   GA+ ++LKPF+ E L   +  + 
Sbjct: 59  GFQVCEEIRK---FWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVL 115

Query: 119 QMQKSKDENQFLDAI 133
           +  K +D+    + +
Sbjct: 116 RRTKIEDKVVVFEGL 130


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ L++D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAI-TNNRPDALILDVMMPRLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L + 
Sbjct: 63  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 43  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGW-DALILDLMLPGVDG 101

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 102 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 161

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 162 DALARDSRIDA 172


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++  +     G+ +  A    +A     +   P  +++D  + G+  F
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALS-VYRLFKPALVILDVMIPGIDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L         + G  AGA+ +L KPF  + L   MR L + 
Sbjct: 64  ELCRLIRAESS---VPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRR 120

Query: 121 QKSKDEN 127
            +  +  
Sbjct: 121 SQMLNSQ 127


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +         +FG  V+ A       E  +K      L++D  M  + 
Sbjct: 1   MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKND-FQLLILDIIMPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   RQ        V  L      E +++G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQKSKD 125
           +   ++ 
Sbjct: 119 RRSGNES 125


>gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 508

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    D G+    A    EA E   +E   + +++D  M  +   
Sbjct: 5   KILIVDDEADIALILKLQLEDAGYRTTRARDGLEALEMLAREHY-DLILLDIRMPRLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ V  +      +  +   + GA  ++ KPF+ + ++  +    +  +
Sbjct: 64  EVLERIRQEWPELVVVMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIEYNR 123

Query: 123 SKDENQFLD 131
           ++ EN+ L 
Sbjct: 124 TRLENERLQ 132


>gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M ++  L+ D    +  +        G+ V +A    EA    E +   + L++D  M  
Sbjct: 1   MKTISILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQP-IDLLILDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R+     ++ + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRRIRE---THNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
 gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R      GF V  +T   E      +    + +++D  + G+ 
Sbjct: 1   MKRILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGL-RAIQNNEFDLIILDIMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ M    D+ V  +  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GL-EILKSMKEDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIEN 118

Query: 121 QKSKDE 126
            +   E
Sbjct: 119 YERLKE 124


>gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.]
          Length = 1155

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ D   ++R   +    +  F V  A S  EA +  + +   + +++D  M G+    
Sbjct: 192 ILVADDELVMRDSLKEWLTEERFSVDMAASGSEALDMLKAKPY-DLMLLDIMMPGMDGVE 250

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      D+ V  +      E  +   + GA  +L+KPFN + L   +  + Q    
Sbjct: 251 VLQKAKENFADLNVIMMTAYATVETAVEAMKKGAMDYLVKPFNPDALTPMILRIFQDADG 310

Query: 124 KDENQFLDA 132
             +++ ++A
Sbjct: 311 VSQDRQIEA 319


>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
 gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
          Length = 239

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +  +     G+ V  A S  +A E   +E  P+ +V+D  + G+  F
Sbjct: 10  RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRE-RPSLIVLDLMLPGMSGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R      +V V  L    +    I G   GA+ +L KPF+   L   +  + + 
Sbjct: 69  DVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRR 128

Query: 121 QKS 123
             S
Sbjct: 129 TGS 131


>gi|148658022|ref|YP_001278227.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus sp. RS-1]
 gi|148570132|gb|ABQ92277.1| response regulator receiver modulated diguanylate cyclase
           [Roseiflexus sp. RS-1]
          Length = 443

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    VR++   +    G+ V    +  +      +E +P+ ++ID  M  +  
Sbjct: 3   KRILIADDEPAVRQLLELVLRSQGYEVVATQNGDQ-LVRTAQEWIPDLVIIDLMMPQMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +R       V +  L      E ++ G   GA+ ++ KPFN   L   +R   +
Sbjct: 62  YEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYVTKPFNIPELLARIRAHLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          +L    G+ V  A +  +A    +     + +++D  + G+ 
Sbjct: 1   MTRILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGA-DLVLLDLMLPGLS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    ++V V  L  +      + G   GA+ ++ KP++   L   ++ + 
Sbjct: 60  GVDVCRALRQR---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVL 116

Query: 119 QMQKSKDEN 127
           +     +E 
Sbjct: 117 RRLSEPEEL 125


>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      GF V EA    EA +          L++D  M  +   
Sbjct: 5   KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VRQ+   + V +  L    D +  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREVRQV---SQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
                  + +DA
Sbjct: 122 TNVLFSEESIDA 133


>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    + ++ R      GF V       +A     ++  P+ +++D  +  + 
Sbjct: 1   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQF-QQRKPSLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +  V      +  + V  A    +  +  E     + +++D  +  +   
Sbjct: 2   RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEA-FPYDLILLDVMLPKLDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V  L  +   E  + G   GA+ +++KPF+   L   +R L + 
Sbjct: 61  SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRR 118


>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
 gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
          Length = 255

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R+V +      G  V+EA    +A +   KE   + +++D  M  + 
Sbjct: 33  MYKILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMA-KEQDFDIIIMDVMMPRLD 91

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  L    +    + G   G + +++KPF+ + +   +  + 
Sbjct: 92  GFSACKEIRK---FKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAII 148

Query: 119 QMQKSKDE 126
           +  KS +E
Sbjct: 149 KRNKSGNE 156


>gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25]
 gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25]
          Length = 235

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R+         GF V  A +     +       P+ +++D  M G   
Sbjct: 4   KQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHH-PDLIILDIMMPGEDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +DV +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLRKN---SDVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQK 122
             +
Sbjct: 120 RSQ 122


>gi|302343346|ref|YP_003807875.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301639959|gb|ADK85281.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfarculus baarsii DSM 2075]
          Length = 449

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M+ +L+VD       V   L    G+ V  A +   A    + E  P+ ++ D  M  + 
Sbjct: 1   MNRILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRLAD-EDEPDLVITDMKMPRMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E I  +R      D+ V  +      E  +   + GA  +++KPF    L     +  
Sbjct: 60  GIELIQALRVD--HPDLPVIVMTAYGTVENAVEAMKLGATDYIIKPFENRELLLTTEKTL 117

Query: 119 QMQKSKDENQFLDA 132
           +M++   +N+ L  
Sbjct: 118 RMRRLMTQNRLLRE 131


>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 241

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 17  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGIDLVVLDLGLPGMD 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 76  GLEVARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 135


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + ++        GF V  A    E     +     + +++D  +  +
Sbjct: 1   MKEKILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSY-DLIILDLMLPKM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R+    ++V +  L  + +    + G   GA+ ++ KPF+ E L   ++ L
Sbjct: 60  NGIEVCKRIRE---FSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKAL 116

Query: 118 PQMQKSKDENQ 128
            +  K ++  +
Sbjct: 117 IRRTKKRNNQE 127


>gi|189460890|ref|ZP_03009675.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136]
 gi|189432464|gb|EDV01449.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136]
          Length = 1318

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLE- 61
            LL+VD +   R    +      + V  A++  EA +  +  E +P+ +V D  M  +   
Sbjct: 1070 LLIVDDNDDFRLFMEYSLGLQ-YRVKLASNGKEAWDILQNSEEMPDLVVSDIMMPEMDGN 1128

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + V  L  + + E  + G   GA+ ++ KPFN   L   +R+L ++
Sbjct: 1129 ELCRLIKEDKRTAHIPVILLSAKQNTESKVEGLTMGADDYVTKPFNMTILVLRIRKLIEL 1188

Query: 121  QK 122
             +
Sbjct: 1189 SR 1190


>gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+   ++ +   + F   GF V  A       E   +++ P+ +++D  + G+ 
Sbjct: 1   MTTILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMV-RQVRPDLIILDVMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R +   T + +  L    D    IAG   GA  +++KPF+   L   +R + + 
Sbjct: 60  GFSVC-RAVAKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRW 118

Query: 121 QKSKDE 126
            + + +
Sbjct: 119 NERQRQ 124


>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|254446246|ref|ZP_05059722.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260554|gb|EDY84862.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 378

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 13/144 (9%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD   I  ++ +      G  V  AT+     +  + E  P+ +++D  M G+  
Sbjct: 15  RTVLVVDDEPINIQLLQRKLEWDGITVLTATNGEACLKVAKAE-RPDLILLDVMMPGMDG 73

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118
           F   A +R+      + V ++      +  + G  AGA  ++ KP + +     +R    
Sbjct: 74  FAVCAKLREDKRTKAIPVIFVTAHNSKKGKLEGLEAGAVDYITKPIDLDETIARVRTQLS 133

Query: 119 ---------QMQKSKDENQFLDAI 133
                    ++ +   E++   AI
Sbjct: 134 YLAINKANIELTRRLGESRRSAAI 157


>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
          Length = 290

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 57  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 115

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + 
Sbjct: 116 SICRRLRSQSN--PMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR 173

Query: 121 QKSK 124
           Q ++
Sbjct: 174 QANE 177


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+ V +A +  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + + V  L  + D    I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDENQFLDAI 133
            +   +N  LD I
Sbjct: 119 AEHNVKNNELDQI 131


>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R++      + G  V  A    E RE  +   + + +++D  + G   L+
Sbjct: 7   ILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPV-DLIILDIMLPGASGLD 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     + V +  L         I G   GA+ +L KPFN   L   +  + +  
Sbjct: 66  LCRDIR---RTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRRM 122

Query: 122 K 122
           +
Sbjct: 123 R 123


>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
 gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
          Length = 236

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 2/129 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLVD    + ++  +  +  G+          A +  E E   +++++D  +  +
Sbjct: 1   MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHY-DFILLDIMLPQL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G    +  +  + D    +     GA+ ++ KPF+   L   ++ + +
Sbjct: 60  DGIEVCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILR 119

Query: 120 MQKSKDENQ 128
               +D  Q
Sbjct: 120 RTDKEDNRQ 128


>gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R+V         ++  EA +  EA  +  K+ + + +++D  +  + 
Sbjct: 1   MKTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAV-DLVILDLMLPDME 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V +  L  +V     I G  AGA+ +++KPF+   +   ++ + 
Sbjct: 60  GERVCQEIR---TFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
 gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
          Length = 267

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +   +D G+ V  A    +  E        + LV+D  M G    
Sbjct: 30  RILVVDDEQDLRALLQRYLSDQGYAVR-ALDGGQHLERLLGRERFDVLVLDVMMPGEDGL 88

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + +  L    D    I G   GA+ +L KPFN   L+  +  L + Q+
Sbjct: 89  SLCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQR 148

Query: 123 S 123
            
Sbjct: 149 M 149


>gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
 gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
          Length = 249

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +        + +V+D  + G    
Sbjct: 16  KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRILTRESIHLIVLDLMLPGEDGL 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 75  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 134

Query: 123 SK 124
           ++
Sbjct: 135 NE 136


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  +         V  A    EA E   K    + +++D  +    
Sbjct: 1   MKKVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKI-KNNSYDIVLLDIMIPVYT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GIEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAIL 116

Query: 119 QMQKSKDE 126
           +    K E
Sbjct: 117 RRSGKKAE 124


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    VR          G+ V  A     A         P  +V+D  M  +   
Sbjct: 2   RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITA-WRPGAIVLDLLMPFMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    +  L         I G  AGA+ +L+KPF+ + L   +R L + 
Sbjct: 61  TMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRR 118


>gi|189426125|ref|YP_001953302.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
 gi|189422384|gb|ACD96782.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
          Length = 454

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 2/132 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +R+V  +   + G+ V  A S  E       +L P  ++ D  M G+   
Sbjct: 4   TILIIDDDASLRRVLEYQLQEAGYEVATAASGEEGLARF-SDLAPQLVISDMQMPGMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      +  V  +      +  +   + GA  ++ KPFNR+ L   +     +  
Sbjct: 63  QVLKTVKERSPETPVIIITAFGSVDVAVQAMKQGAYDYITKPFNRDELHLTVARALHLTS 122

Query: 123 SKDENQFL-DAI 133
              EN+ L DA+
Sbjct: 123 LTRENRRLKDAL 134


>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
 gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++     ++ G+ V +A     A          + +++D  M  + 
Sbjct: 1   MK-ILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ + + 
Sbjct: 60  GM-QVVKKLRKESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118

Query: 121 QKSK 124
              K
Sbjct: 119 SNIK 122


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G+ V EA    EA +   ++     +++D  M  +   
Sbjct: 5   KVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIRE---TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121


>gi|260768957|ref|ZP_05877891.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260616987|gb|EEX42172.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 241

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++     +  GF V   +      ++      P+ +++D  + G   
Sbjct: 4   THILVVDDDIEICELLDEYLSKSGFSVATVSDGRALAQYLTDHGYPDLVLLDVMLPGEDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    ++V +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQKIRRD---SNVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120

Query: 120 MQKSKDE 126
             +  +E
Sbjct: 121 RVQVNEE 127


>gi|229495757|ref|ZP_04389485.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317331|gb|EEN83236.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 969

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+V+ +  +         +  + +  A +  E  E   +EL+P+ ++ D  M  +    
Sbjct: 712 LLIVEDNRDIAAYIGSQLANH-YAISYAANGLEGLEKA-QELVPDLIITDLMMPEMDGLE 769

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+  + + + +  +  ++  E+ I G  AGA+++L KPFN + LR  + +L + +
Sbjct: 770 LCRQVRKNEIISHIPIIVVTAKISEEERIKGIEAGADAYLAKPFNSDELRTRVEKLLEGR 829

Query: 122 KSKDE 126
           +   E
Sbjct: 830 RLLQE 834


>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E +    ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFK-FILLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
 gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7425]
          Length = 337

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD S     +   L    GF V+ A S   A E      LP+ +++D  M G+  F
Sbjct: 10  TVLIVDDSPASLGILSDLLETAGFEVWVARSGISAIEKL-NHALPDLILLDVMMPGLDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ + ++    D    + G + G   ++ KPF +E +   +R   ++
Sbjct: 69  ETCRRIKANEQLQDLPIIFMSSLSDTVDKVKGLQLGGVDYITKPFQQEEVLARIRVHLKL 128

Query: 121 QKSKDENQ 128
           +K     +
Sbjct: 129 KKLTRALE 136


>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+    VR++        GF +     V + +     E +P+ +++D  +     +
Sbjct: 4   NILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALL-ERVPDLILLDWMLPDVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           ++   +++ P   DV +  L    + E  + G   GA+ ++ KPF+   L   +R + + 
Sbjct: 63  DWARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRR 122


>gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++V+    +  V +      G+          A E       P+  ++D  +  + 
Sbjct: 1   MTRIVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAP-PDLTLLDIMLPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L   ++    + G   GA+ ++ KPF+   L   +R + + 
Sbjct: 60  GIEVLRRAREHTAH-PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRR 118


>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+V+   I+R+   H F+  G+ V  A       +   E+E   + +++D  +  +
Sbjct: 5   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 65  DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121

Query: 118 PQMQKSKDENQ 128
            +    + + Q
Sbjct: 122 FKDTNQQVQYQ 132


>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+     R+V  +     GF V  A    EA     +E +P+ +V+D  M     +
Sbjct: 7   TVLVVEDELAQREVLAYNLEADGFRVLRAEHGEEAL-LIVEEDMPDIIVLDWMMPNLSGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ +  L    +    + G   GA+ +++KP++   L   +R   + 
Sbjct: 66  EVCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125

Query: 121 QKSKDENQFLD 131
            +       L+
Sbjct: 126 VRPSTVGVRLE 136


>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +F A    +  E  +  + P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQT-IFPDLIISDVMMPRANGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    + ++        GF    A    +A     +   P  +++D  + G+  F
Sbjct: 5   SILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTP-PAGIILDLMLPGLDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P      +  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  EVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123

Query: 121 QKSKDENQF 129
              + E + 
Sbjct: 124 HAPEQERRQ 132


>gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
 gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris DX-1]
          Length = 457

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  EA E C++    + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVKLLEDRLSAEYFDVITASNGVEALEICQRAEC-DIVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    L +     V   T+  EA     +      +V +       L 
Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +  + +    +  G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELMA 266


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +      + G+++ +A    EA +  E++  P+ +V+D  M  + 
Sbjct: 1   MTRILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDP-PDLIVLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F  +VR+      V +  +  + +    I G   GA+ +++KPFN   L   ++ L 
Sbjct: 60  GLEFCKYVRKN---NQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 222

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ R   +  G+ + EA                + +V+D  +  + 
Sbjct: 1   MAKILIVDDDPAIREILRAYLSHEGYELSEAADG---VSALALAPAADLVVLDLMLPEMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        ++ +  L    + E+ + G   GA+ ++ KPF+   L   +R L + 
Sbjct: 58  GLEVARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRR 117

Query: 121 QKSKDEN 127
               D  
Sbjct: 118 SGIHDRL 124


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 239

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ AT+  +A +   +E  P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-REARPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 73  GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130


>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +    +    D G+ V  A    EA    +    P+ +V+D  M G+  
Sbjct: 3   QTILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN--PDLIVLDVMMPGMDG 60

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+        + +L  +   +  + G   G + +L+KPF+ + L+  +    +
Sbjct: 61  FALCELIRKS---ISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLR 117

Query: 120 MQKSKDEN 127
            ++  + N
Sbjct: 118 REQRINSN 125


>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 3 str. Tulya]
 gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+   D G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 236

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +        G++  +A +  EA     ++ + + +++D  M  +  
Sbjct: 5   KTILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNV-DLVILDVMMPKLNG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  IDTCLKIREE-REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA +   +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNY-NLVILDIMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
 gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
          Length = 1349

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD    +R+  +  F    + V+ A +  +A    EK  + + ++ D  M  +    F
Sbjct: 1103 LIVDDDEDMRQFVKAHFEKM-YTVYTADNGKDALRKLEKHPV-SLIISDWMMPEMDGPEF 1160

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               VR+    + +    L  + D          GA+ ++ KPF+ + L  ++R+L +M++
Sbjct: 1161 CRRVRENSEYSHLPFVMLTAKTDDAAKTESMNCGADVYIEKPFSMKYLEASVRQLLEMRR 1220

Query: 123  SKD 125
               
Sbjct: 1221 LLR 1223


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G+  +
Sbjct: 4   KILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAA-QEHDPDLILLDVMLPGMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR+    + V +  L    D   ++ G  +GA+ ++ KPF  + L   +R   + 
Sbjct: 63  DVCRTVRE---FSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRR 119


>gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF]
 gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE]
 gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU]
 gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056]
 gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058]
 gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059]
 gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
 gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii]
 gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC
           17978]
 gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2]
 gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
          Length = 254

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|197117616|ref|YP_002138043.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
 gi|197086976|gb|ACH38247.1| response receiver-modulated diguanylate cyclase [Geobacter
           bemidjiensis Bem]
          Length = 349

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +    ++   +     + V  A +  +A    +++ LP+ +++D  M G+  
Sbjct: 10  QKILIVDDTPANIEILYSILKGA-YDVLFAKNGGDAIRIVQQQ-LPDLILLDIMMPGMDG 67

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++  PL   + + ++      E    G ++GA  +L KP +   +   +R   Q
Sbjct: 68  YQVCRVLKADPLTAKIPIIFVTAMSKEEDEAMGLQSGAIDYLTKPISPPIVLARVRNHLQ 127

Query: 120 MQKSKDENQFLDA 132
           ++++ D  + L A
Sbjct: 128 LKRNSDLLEQLTA 140


>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 241

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R++ +       +++ EA     A E        + +++D  + G   +E
Sbjct: 10  ILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDY-DVILLDLMLPGKDGIE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+        +  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 69  VCKEIREH---KTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 124


>gi|124006367|ref|ZP_01691201.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla
           marina ATCC 23134]
 gi|123988024|gb|EAY27695.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla
           marina ATCC 23134]
          Length = 490

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +    K+     +  G+    A     A E     + P+ +++D  M G+  F
Sbjct: 11  KILVVDDTPANIKLMVEHLSQEGYKTLVAEDGESAIEQV-AFVKPDLILLDVMMPGIDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     D+ + ++    D E  +     GA  ++ KP   + +   +     +
Sbjct: 70  ETCHRLKEDDSTKDIPIIFMTALSDTENKVKAFSMGAVDYVTKPIQHKEVLSRVSAHLTI 129

Query: 121 QKSKDENQ 128
           +K +   +
Sbjct: 130 RKLQKSLE 137


>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 477

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      K+   + +   + + +A +   A      +  P+ +++D  M  +   
Sbjct: 12  NILIVDDHPENLKILTQMLSQKNYKLRKAINGEMALNAAFSKP-PDLILLDIVMPEMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H+++ P+ +++ V ++    +    +     G   ++ KPF  + +   ++   ++
Sbjct: 71  QVCQHIKENPITSEIPVIFISALDEAFNKVKAFEMGGVDYITKPFQIKEVLARVQLQLRL 130

Query: 121 ----QKSKDENQFLD 131
               Q+ K++NQ L 
Sbjct: 131 QHQTQQLKEQNQKLQ 145


>gi|53712177|ref|YP_098169.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|52215042|dbj|BAD47635.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
          Length = 1328

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+ +  VR+  R LF    + V EA    E       E +P+ ++ D  M     
Sbjct: 1080 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1137

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L  + +   ++ G+ +GA+ +++KPFN E L+  +  L  
Sbjct: 1138 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1197

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1198 QRERLKR 1204


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +LLV+    + +      +  G+ V  A           +E  P+  V+D  + G+
Sbjct: 1   MTTHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLA-RESTPDLAVLDWMLPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G  + V  L    +    +AG  AGA+ +++KPF+ E L   +R   +
Sbjct: 60  SGLEICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLR 119

Query: 120 MQKSKDEN 127
             +  DE+
Sbjct: 120 RTQETDED 127


>gi|328861007|gb|EGG10111.1| hypothetical protein MELLADRAFT_115552 [Melampsora larici-populina
            98AG31]
          Length = 2085

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+ D +  +R   R + + + + V EA+   EA  + +    P+ +V D  M      
Sbjct: 1256 TILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHH-PDLVVSDVMMPALNGF 1313

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  ++  P    + V  L      E  I G   GA+ +L+KPF  + L   +    Q+
Sbjct: 1314 ELLKRLKTDPDTAGISVILLSAHAGSEIRIEGLAEGADDYLVKPFEAKELVARINTHLQL 1373

Query: 121  QKSKDENQ 128
             K +   +
Sbjct: 1374 SKMRQRLE 1381



 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 13/130 (10%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-------PNYLVIDE 54
              +L+V+ + I  KV +   +  G+ V  A    +  +   ++            +++D 
Sbjct: 1952 THVLVVEDNLINVKVIKRQLSLKGYSVSVAMDGRQGLDILYEDDQHPSELGRIGIVLMDI 2011

Query: 55   SMEGVLEF--IAHVRQMPLGTDV----FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
             M  +     I  +R       V     V  +      E+      +G +   +KP+  E
Sbjct: 2012 QMPVMNGLDAITELRASEKTGKVKQRYPVIAVTGNARKEQTEQFLASGFDDICVKPYKIE 2071

Query: 109  TLRFAMRELP 118
             ++  M  L 
Sbjct: 2072 DVQNRMEALL 2081


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    GF    A +  +A E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
 gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +  EA E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDY-DLILLDIMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G   G++ +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 121


>gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 243

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     G+ V  A    +A         P+ +V+D  + G   L+
Sbjct: 20  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAV-RRPDLMVLDWMLPGLSGLD 78

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L         I G   GA+ ++ KP + E L+  +R L +  
Sbjct: 79  VCRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 138

Query: 122 KSKDEN 127
              ++ 
Sbjct: 139 PPAEQM 144


>gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
 gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp.
           PCC 8106]
          Length = 456

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD       +   + N+ G+ V +A S   A +  E E LP+ +++D  M  +  
Sbjct: 10  TNILVVDDYLDNLTLLTIILNNLGYQVRQADSGKTALKAVE-EKLPDLILLDIQMPEMDG 68

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE--L 117
           +     ++  P   D+ + +L    +    + G   G   ++ KPF  E +   + +  +
Sbjct: 69  YSCCQQLKANPKTKDIPIIFLSAFNNAVDKVKGFEVGGEDYITKPFLLEEVIARVEKQLI 128

Query: 118 PQMQKSKDENQF 129
            + Q+++ + + 
Sbjct: 129 LKQQRNQLKQEL 140


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++    + +         G+ V +  +  +      KE   + L++D  + G   
Sbjct: 3   KKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINIL-KEKSFDLLLLDIMLPGLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E  + +R+    +D+ +  L  + + E  + G   GA+ +L KPF  E L   +R   +
Sbjct: 62  MEVCSQIRE---FSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLR 118

Query: 120 MQKSKDENQFL 130
             +   EN+ +
Sbjct: 119 RDEGNLENENI 129


>gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 228

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LL+D    +  +   L    GF++ +A    +     +++   + +++D  +  + 
Sbjct: 1   MNRILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQD-FDLILLDVMLPKLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R +       +  L    D    + G   GA+ +L KPFN   L   +R + + 
Sbjct: 60  GF-EVLRALRQRKQTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRR 118

Query: 121 QKSKDEN 127
            ++  ++
Sbjct: 119 AQTTQQD 125


>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF   EA    +A E   KE  P+ +++D  +  V  F
Sbjct: 4   KILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEK-PDLILLDIMLPKVDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++       +  +  + +    + G   GA+ ++ KPF+   L   ++   +   
Sbjct: 63  TVC-RKLRQTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVS 121

Query: 123 SKD 125
           S++
Sbjct: 122 SEN 124


>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
 gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D     R+  R    + G++V  A +  E      +E   + +++D  M  + 
Sbjct: 1   MK-ILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMA-QEYHYDLILLDVMMPELD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   V +     ++ V +L  +   E  I G   GA+ +L+KPF+   L   +R   + 
Sbjct: 59  GW--EVMKTLDAQNIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRR 116

Query: 121 QKSKDENQFLD 131
             +   ++ L 
Sbjct: 117 GANVKRDELLQ 127


>gi|265765508|ref|ZP_06093783.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|263254892|gb|EEZ26326.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
          Length = 1361

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+ +  VR+  R LF    + V EA    E       E +P+ ++ D  M     
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L  + +   ++ G+ +GA+ +++KPFN E L+  +  L  
Sbjct: 1171 FVCCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1231 QRERLKR 1237


>gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 254

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+  H +  + R    D G+ +    +   A    EK+ + + +++D  + GV  
Sbjct: 5   RKILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQ-VWDAVILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   + V  +         + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 64  LEICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQ 123

Query: 122 KSKDENQFLDA 132
           ++  +N  ++A
Sbjct: 124 EAMGQNIRMEA 134


>gi|253563785|ref|ZP_04841242.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|251947561|gb|EES87843.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
          Length = 1361

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+ +  VR+  R LF    + V EA    E       E +P+ ++ D  M     
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L  + +   ++ G+ +GA+ +++KPFN E L+  +  L  
Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1231 QRERLKR 1237


>gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum
           3TCK]
 gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum
           3TCK]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  +   +    GF + EA +  E     +     + +++D  M  + 
Sbjct: 1   MAKILLVDDDVELTSLLTDILEMEGFDIVEANNGIEGLAKIDTS--IDLILLDVMMPKMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++       V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  G-TQMLRKLRESFATPVLMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDENQF 129
            +  + N  
Sbjct: 118 TQLTENNLR 126


>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + ++     G++ FEA    EA +   KE  P+ +++D  +  +  F
Sbjct: 4   KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMA-KEQNPDLIILDVMLPKMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++ +     V +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  TV-LKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRR 119


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +  +R+V   L  + G+ V EA     A    +     + +++D  M  +  F
Sbjct: 4   KILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAK---DMDLIILDVMMPKMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               RQ+   ++  + +L  +   +    G  +G + +L KPF+   L   ++ L + 
Sbjct: 61  -KACRQIREVSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRR 117


>gi|262409249|ref|ZP_06085793.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294645954|ref|ZP_06723622.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806056|ref|ZP_06764914.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|262352996|gb|EEZ02092.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292638699|gb|EFF57049.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294446739|gb|EFG15348.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1341

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +     + +    +  +A     +E  P+ ++ D  M  +  
Sbjct: 1077 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1134

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G   GA++++ KPF+   L+  ++ L  
Sbjct: 1135 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1194

Query: 120  MQKSKDE 126
             +    +
Sbjct: 1195 NRALLRQ 1201


>gi|189464788|ref|ZP_03013573.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM
            17393]
 gi|189437062|gb|EDV06047.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM
            17393]
          Length = 1288

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+VD +  +R   +  F +  + + EA +  EA E  +KE  P   + D  M  +  
Sbjct: 1041 KSILIVDDNKDLRNFLKCSFENQ-YYILEAGNGNEAWELLQKES-PELTISDVMMPDMDG 1098

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F     ++     + + V  L    D    + G   GA  ++ KPF+   L   ++ L +
Sbjct: 1099 FELCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158

Query: 120  MQKSKDE 126
             ++   E
Sbjct: 1159 NREIVRE 1165


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++ +  F+   F V       EA     +E  P+ +++D  +EG   +
Sbjct: 5   RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEAL-LLARENPPDIMLLDWMVEGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+ P   ++ +  L    + +  I G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123

Query: 121 QKSKDENQFLD 131
            +     + L+
Sbjct: 124 IRPALSKEQLN 134


>gi|317494184|ref|ZP_07952600.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917957|gb|EFV39300.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 464

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V ++   +F+  G  VF A +  +A    E+E  P+ +++D  M  +   
Sbjct: 6   RILIVDDEKNVLRMLNTVFSQEGNQVFCADNGQDALAIFEQE-RPDVVLMDIRMPTMNGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R      D  +  +      E  +   R GA  +++KPF  + L+  +    Q++ 
Sbjct: 65  EALQRMREKWLDTPIILMTAYAAVETAVEALRLGAFDYVIKPFELDELKLLINRALQLRN 124

Query: 123 SKDENQFL 130
            K E   L
Sbjct: 125 MKQEINIL 132


>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 238

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +   +  + + +V+D  + G+ 
Sbjct: 14  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 73  GLEVARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 132

Query: 121 QKSK 124
             ++
Sbjct: 133 GSAE 136


>gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 464

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A++  +A E    E  P+ +++D  M G+  F
Sbjct: 4   RVLVVDDVLPNVKLLAAKLTREYFNVLTASNGPDALEMVRTES-PDIVLLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P    + V  +    D    + G  AGA+ FL KP N   L   +R L ++
Sbjct: 63  EVCEKIRSDPATMHIPVVMVTALSDIADRVRGLEAGADDFLTKPVNDIALFARVRSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  ++
Sbjct: 123 KMMMDEWRLRES 134



 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
           S+L+++ S +  +            V  A +  +A E      L   +V +    E  L 
Sbjct: 157 SVLVLEDSVLDLEKVTETLQRDHNTVMSADTCAKALERALGGSLDLVVVSLTLLNEDGLR 216

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R       V +  ++ + D  ++  G   GAN +++KP +R  L    R   + +
Sbjct: 217 LCSQLRSHERTRQVPILLMVDDGDLGQVAKGLELGANDYVVKPVDRNELLARARTQIRRK 276

Query: 122 KSKDENQ 128
           + ++  +
Sbjct: 277 RYQERLR 283


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA +   K    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNY-NLVILDIMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|167764904|ref|ZP_02437025.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
 gi|167697573|gb|EDS14152.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
          Length = 1473

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +  +R   + +F    F V EA +     E   K+ LP+ ++ D  M     +
Sbjct: 1211 TILIVEDNQELRFFIKTIFIQH-FNVIEAENGIIGLEK-SKKYLPDIIISDVMMPEKDGI 1268

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  +R+    + + +  L  +   E  I G  +GA+ ++ KPF+   L+  +  L   
Sbjct: 1269 EMVRELREDMSTSHIPIVMLTAKSTIESRIEGLESGADDYITKPFSAAYLKARIFNLI-- 1326

Query: 121  QKSKDENQFLDAI 133
                D+ + L A+
Sbjct: 1327 ----DQRKKLQAL 1335


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+  H +  + R    D G+ +       +A +  E +   + +++D  +    
Sbjct: 1   MKQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPW-DAVILDLMLPNVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQM     + V  +         I G   GA+ +L KPF+ + L   ++ L 
Sbjct: 60  GLEICRRIRQM--TRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALF 117

Query: 119 QMQKSKDENQ 128
           + Q++  + Q
Sbjct: 118 RRQQAMGQAQ 127


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA    +     + +++D  +  +  
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSY-DMILLDVMLPKMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +DV +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQAIRE---FSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQFLDAI 133
               +   Q   ++
Sbjct: 119 RTSPERAPQVQSSV 132


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ +    +R V        G+ V EA    +A +    +   + +++D  M    
Sbjct: 23  MIKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDN-FSLVLLDIMMPKRD 81

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE  A +R++   +DV +  L         + G + GA+ ++ KPF+ + L   ++ + 
Sbjct: 82  GLEVCAEIRKL---SDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSIL 138

Query: 119 QMQKSKDENQF 129
           +      +++F
Sbjct: 139 KRAGLLQDSEF 149


>gi|298493029|ref|YP_003723206.1| response regulator receiver protein ['Nostoc azollae' 0708]
 gi|298234947|gb|ADI66083.1| response regulator receiver protein ['Nostoc azollae' 0708]
          Length = 121

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   R++   L    G  V  A    EA E  +    P+ +V+D  M  + 
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTP-PDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYELCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V  A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              ++   +
Sbjct: 119 RHYAQPAQE 127


>gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 229

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  +   +    GF V +A +  +  E        + +++D  M  + 
Sbjct: 1   MAKVLLVDDDTELTALLHDILEMEGFEVEQANNGEQGLEKINAS--IDLVLLDVMMPKMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++       V  L  + D    + G   GA+ +L KPF+   L   MR + + 
Sbjct: 59  G-TEMLRRLREKYSTPVLMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARMRAILRR 117

Query: 121 QKSKD 125
            ++ D
Sbjct: 118 TQALD 122


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    +     +L    G+ V  A    +A E  E     + +++D  + G  
Sbjct: 1   MTKILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGA-DIILLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R   +   V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRAIRAKSM---VPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVL 116

Query: 119 QMQKSK 124
           +  +++
Sbjct: 117 RRGQAQ 122


>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119

Query: 121 QKSKDEN 127
             ++ + 
Sbjct: 120 GAAEPQQ 126


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+ D    +R+         G+    A    E       + + + L++D  M G   
Sbjct: 5   RTVLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPV-DLLILDVMMPGVDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L     +R    G    +  L   V+    +AG  AGA+ +L KPF  + L   +R L +
Sbjct: 64  LGVCRVLRA--EGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium sp. M14]
          Length = 230

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++V+    +  + R+     G++V       EA +   +E +P+ L++D  + G   +
Sbjct: 4   KVMIVEDEEALSVLLRYNLEAEGYLVETIGHGEEA-DIVLQESVPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + V  L    +  + + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 63  ELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALLRR 122

Query: 121 QK 122
            K
Sbjct: 123 SK 124


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 13  KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 72  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131

Query: 123 SKDE 126
            K E
Sbjct: 132 GKAE 135


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    + ++     ++ G+ V +A    EA          + L++D  M  +   
Sbjct: 2   KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ + +  +
Sbjct: 62  -EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120

Query: 123 SKDENQFLDAI 133
            +   +  D +
Sbjct: 121 MQLTKEEPDEL 131


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  ATS   A     K+  P+ +V+D  +  +  F
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAA-KDHRPDLVVLDVMLPDLDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    GT   V +L      +  I G   G + ++ KPF+ E L   +R + +   
Sbjct: 68  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 127

Query: 123 SKDE 126
           + D+
Sbjct: 128 NGDQ 131


>gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
 gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
          Length = 239

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQ-MDRILTRESIHLIVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    + +V        G+    A +  EA+EF   E  P+ +++D  +     
Sbjct: 6   TKVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYL-EYNPDIVLLDVMIPYIDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++ +  +R+     +  V  +  + D    +     GA+ +++KPF  + L   ++ + +
Sbjct: 65  IDILKWIRKQ---KETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLR 121

Query: 120 MQKSKD 125
              S++
Sbjct: 122 RYSSEN 127


>gi|330504290|ref|YP_004381159.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918576|gb|AEB59407.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 244

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V         R+    E   + +++D  +     
Sbjct: 6   KSILLVDDDQEIRELLETYLSRVGFQVRAVADGGAFRQSLCAESA-DLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VR+      V +  L    D    + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  FSLCRWVREHQRFAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124

Query: 120 MQKSKDE 126
             +   E
Sbjct: 125 RAQFTQE 131


>gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
 gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria
           sp. PCC 6506]
          Length = 215

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             L+LVD    +  + +      G+ V  A +  EA E  E E LP+ ++ D  M  +  
Sbjct: 10  KRLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLE-EDLPDLIICDVMMPEMDG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + HVR+ P  + + V +L  +   +  + G   GA+ +++KPF  E L   +    +
Sbjct: 69  YTLVKHVREDPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQVESSLK 128

Query: 120 M 120
            
Sbjct: 129 Q 129


>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
 gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
           sp. WH 8109]
          Length = 245

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFIA 64
           VD    +R   +    D GF V  A    E      +++LP+ ++ D  M        + 
Sbjct: 24  VDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFAKA-QQMLPDVVISDVMMPRLDGYGLLQ 82

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-QKS 123
            +R         V +L  +        G  AG + ++ KPF+ + L   +R + Q  Q+ 
Sbjct: 83  KLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQQRL 142

Query: 124 KDENQFLD 131
             E     
Sbjct: 143 LQEAARFA 150


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A +  EA     +    N +++D  M     +
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKY-NLIILDLMMPKVDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 64  EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120


>gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 234

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+ +  +  + +       F+   A+    A E  +++  P+ +++D  +     L
Sbjct: 2   NILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQ-QPDLIILDLMLPKLDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ     D ++  L  + +    + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  EVCTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK   P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V YL    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    V KV     N  G+ V  A    +A E   KE  P+ +V+D  +  + 
Sbjct: 1   MTCILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKE-APDLVVLDVMLPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + 
Sbjct: 60  GFAVCRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 239

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +  + +      G+ V  A +  E  +       P  +++D ++    
Sbjct: 1   MSRILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRA-FQPALVILDLNLPDVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +++      V+V  L   V     + G + GA+ +L KPF+   L+  ++ + 
Sbjct: 60  GYDLCQQMQKETG---VYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAIL 116

Query: 119 QMQKSKDE 126
           + Q+ K E
Sbjct: 117 RRQRMKTE 124


>gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 265

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKG-QALALQYSPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    + + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R   +D G+ V             E+      ++ D  + GV  
Sbjct: 5   KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVL-DLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   V +            I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRS 123

Query: 122 KSKDENQFLDA 132
           ++   N  L+A
Sbjct: 124 EALARNAKLEA 134


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 5/137 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   LL+V+    + ++  +     G+ V        A E   ++  P+ L++D  + G
Sbjct: 1   MNKADLLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQV-RQKRPDLLLLDWMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              LE    +R  P    + +  L    +    I G   GA+ +L+KPF+ E L   ++ 
Sbjct: 60  ISGLEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKA 119

Query: 117 LPQMQKSKDENQFLDAI 133
           + +     D+    D +
Sbjct: 120 MLRRLPPADKTLRFDTL 136


>gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++  +     G+ V  A++  +A +  +   +P+ +++D  M  +   
Sbjct: 12  KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKA-FVPDLILLDIMMPQLDGI 70

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ P   + ++ +L    +    +A    GA+ ++ KP     L   +  L + 
Sbjct: 71  ETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR 130

Query: 121 QKSKDE 126
           +  K E
Sbjct: 131 EAQKAE 136


>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +    E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKV-NEINPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +  
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 121 ---QKSKDENQ 128
              QK  DEN+
Sbjct: 121 DIVQKQVDENE 131


>gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +  +        GF V       EA    +++   + LV+D  + G+
Sbjct: 1   MKDHVLIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEY-DTLVLDIMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +R++   TD  V  L    +    I G   GA+ +L KP N   L   +R + +
Sbjct: 60  MGL-DVLRKIRDFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILR 118

Query: 120 MQKSKDENQ 128
             +  D N+
Sbjct: 119 RSQLTDTNE 127


>gi|209514967|ref|ZP_03263836.1| PAS modulated sigma54 specific transcriptional regulator, Fis
           family [Burkholderia sp. H160]
 gi|209504593|gb|EEA04580.1| PAS modulated sigma54 specific transcriptional regulator, Fis
           family [Burkholderia sp. H160]
          Length = 595

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+       V   L +  GF V  A     A E       P  +++D  M G+  F 
Sbjct: 20  ILVVEDVPANLSVLLDLLSGAGFTVSVAEDGESALEQVAYA-QPALILLDVMMPGLDGFA 78

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V ++    D    + G   GA  ++ KPF  E +   +    ++Q
Sbjct: 79  TCRRLKANLATREIPVIFMTGLTDTIDKVKGLELGAVDYITKPFQHEEVLARVNTHLELQ 138

Query: 122 KSKDENQFLDA 132
           + K   Q  + 
Sbjct: 139 RLKLRLQKSEE 149


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++   + G+ V  A+    A +  ++E   + +++D  +  + 
Sbjct: 1   MAKILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQES-FDAILLDLMLPVID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                           V  +  + D    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GMTLLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 SQ 121


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R    D G+ V  A          E+    + LV+D  + GV  
Sbjct: 5   KRVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSW-DALVLDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRT 123

Query: 122 KSKDENQFLDA 132
            +   N  +++
Sbjct: 124 DALARNARMES 134


>gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  + G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++     ++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKVIDA 136


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    V  V R      G+ V  A           +   P+ +V+D  +     +E
Sbjct: 8   ILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEY-RSGRPDLVVLDLMLPKLPGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    D    IAG   GA+ +L KPF+   L   +  + +  
Sbjct: 67  VCRALRIESE---VPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRA 123

Query: 122 KSKDENQF 129
              +  + 
Sbjct: 124 VRTEAAER 131


>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
 gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +RK+ R       + V EA    EA +   KE     +++D  M      
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR+    + V +  L  + D    + G   G + ++ KPF+ + L   +  L + 
Sbjct: 65  DVCREVRE---TSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRR 121

Query: 121 QKSKDEN 127
                 N
Sbjct: 122 SGLTAGN 128


>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
 gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V  A    +A E    ++ P+ +++D  + G   
Sbjct: 3   RKIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIY-DIQPDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+ +++
Sbjct: 119 RHYSQTQSE 127


>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + K  +      G+ V  A           ++  P+ +++D  M G+   
Sbjct: 7   RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGL-MAARDSEPDLVLLDWMMPGLTGV 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + V  L  +   E  +AG  AGA+ +++KPF+ E L   +R   +  +
Sbjct: 66  EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125

Query: 123 SKDENQFLDA 132
            +D   FL A
Sbjct: 126 PEDPESFLFA 135


>gi|325270713|ref|ZP_08137308.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           multiformis DSM 16608]
 gi|324986959|gb|EGC18947.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           multiformis DSM 16608]
          Length = 954

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++ +  +      LF D  + V  A++  E  E    +L+P+ ++ D  M G+   
Sbjct: 705 RLLVIEDNRDIAAYIGSLFADR-YDVSYASNGKEGMEMAL-DLMPDLIITDLMMPGMDGL 762

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR   +   + +  +  ++  E+ I G  AGA+++++KPFN + LR  + +L   
Sbjct: 763 EVCRQVRGNEIINHIPIIVVTAKITEEERIRGLEAGADAYIVKPFNADELRTRVEKLLDR 822

Query: 121 QKSKD 125
            +   
Sbjct: 823 HRLLR 827


>gi|302339427|ref|YP_003804633.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636612|gb|ADK82039.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 515

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD   I R +        G++  EA +  +A E  E++  P+ +++D  M       
Sbjct: 10  VLVVDDEAINRLLLVTALKKRGYLPEEAANGKDALEKVEQKP-PDLILLDVMMPDLTGFG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++     D+ V  +      E +  G +AGA+ F+ KP N   L   +R L +++
Sbjct: 69  VCRSLKERKETADIPVILVTALHSREDIEEGIKAGADEFISKPVNINELMVRVRTLLKIR 128

Query: 122 KS 123
           + 
Sbjct: 129 EL 130


>gi|237713842|ref|ZP_04544323.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445998|gb|EEO51789.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1330

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +     + +    +  +A     +E  P+ ++ D  M  +  
Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1123

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G   GA++++ KPF+   L+  ++ L  
Sbjct: 1124 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1183

Query: 120  MQKSKDE 126
             +    +
Sbjct: 1184 NRALLRQ 1190


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB900]
 gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB056]
 gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB058]
 gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB059]
 gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
 gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2]
 gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter
           calcoaceticus PHEA-2]
 gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  + G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++     ++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKTIDA 136


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++ K  ++     G+ +  A    EA E  +     + +++D  +  +   
Sbjct: 4   KILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANA-DLILLDLMLPKIDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +   +  L  + +    I G   GA+ +L KPFN   L+  ++ + + 
Sbjct: 63  QVCQQIRLN---SQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRR 119

Query: 121 QKSKDE 126
            +S D+
Sbjct: 120 YQSSDK 125


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           ++VD    + ++ ++     G+ V+ A    EA E    E+ P+ +++D  +  +     
Sbjct: 1   MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKV-TEVEPDLVLLDLMLPKMDGLEV 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R++    ++ +  +  +      + G   GA+ ++ KPF+   L   ++   + + S 
Sbjct: 60  A-REIRKTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASS 118

Query: 125 DENQ 128
            + +
Sbjct: 119 VKEE 122


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R + +       F ++EA +  +A E  E +  P+ +++D  +  + 
Sbjct: 1   MEKILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILE-DKKPDLVILDLMLPDIN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         +  +  +   +  I G   GA+ ++ KPFN   +   ++   
Sbjct: 60  GLNICKSIRTKYKY---PIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQL 116

Query: 119 QMQKSKDEN 127
           +  K   EN
Sbjct: 117 RRYKEYGEN 125


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLVILDIMMPNMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 68  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124


>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V  A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKK---YDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              ++   +
Sbjct: 119 RHYAQPAQE 127


>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 1711

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D +  +R     L     + V       +A +    +  P+ +V D  M G   +
Sbjct: 627 RVLVADDNADMRGYLLRLLGPH-YDVRAVADGRQALDAALADP-PDLVVSDVMMPGLDGM 684

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R  P    V V  L      E  + G  AGA+ +L+KPF+ + L   +R   ++
Sbjct: 685 GLLAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARVRAHLEL 744

Query: 121 QKSKDENQ 128
            +++   +
Sbjct: 745 GRARRAAE 752


>gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
 gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
          Length = 244

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   +V +V      + GF V  A     A    E    P+ +V+D  + G+ 
Sbjct: 1   MARVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARP-PDLVVLDLMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 R++     V V  L    D    I G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GL-EVFRRLTARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVL 116


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++  H +  +  +     GF    A    +  E    E  P+ +V+D  +  +  
Sbjct: 3   KKILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEK-PSLIVLDLMLPSMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ  +  +  +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  VEVCKSLRQQKV--NTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +       F V  A     A E   K+  P+  ++D  M G+  
Sbjct: 18  TRVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIA-KDFQPDAYILDVMMPGMDG 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           F    +    G +  V +L  +   +  I G   GA+ ++ KPF  E +   +R + +  
Sbjct: 77  FTVLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRV 136

Query: 121 QKSKDENQFL 130
           Q  + E++ L
Sbjct: 137 QPEEKEDESL 146


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ LV+D  M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMI-ASDRPDALVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 61  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 123 SKDENQFLD 131
            +D  + + 
Sbjct: 121 PEDAAESMA 129


>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
           [Alicycliphilus denitrificans BC]
 gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
           denitrificans K601]
 gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alicycliphilus denitrificans BC]
 gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    A     A+   +  +LP+ +++D  + 
Sbjct: 1   MKPFPHVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDA-VLPDVILLDWMLP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+         R       V +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GMSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 234

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 10  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 69  GLEVARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 128

Query: 121 QKSKDEN 127
             ++ + 
Sbjct: 129 GSAEPQQ 135


>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + ++     G++ FEA    EA +   KE  P+ +++D  +  +  F
Sbjct: 4   KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMA-KEQNPDLIILDVMLPKMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++ +     V +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  TV-LKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRR 119


>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGVDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119

Query: 121 QKSKDEN 127
             ++ + 
Sbjct: 120 GATEPQQ 126


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +A E  E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     ++V V  +  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRVR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067]
 gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H     GF V EA     A E        +  VID  M  + 
Sbjct: 1   MKQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAA-EQIVTSQQVHLAVIDLMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +      ++ V  L  +        G   G + ++ KPF  E L F +R L + 
Sbjct: 60  GFELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 121 QKSKDE 126
                E
Sbjct: 120 STQASE 125


>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 7/132 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +  + R      G+ V  A    E       E  P+ +++D  M  +  
Sbjct: 3   TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVL-EDEPDLIILDIMMPDLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + +  +         + G   GA+ +L+KPF  E L   ++ L +
Sbjct: 62  LEVCKRLRKDAG---IPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLR 118

Query: 120 MQ-KSKDENQFL 130
                K E++ L
Sbjct: 119 RLDHKKKEDEKL 130


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +LL D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|332881353|ref|ZP_08449003.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
 gi|332680729|gb|EGJ53676.1| response regulator receiver domain protein [Capnocytophaga sp. oral
            taxon 329 str. F0087]
          Length = 1328

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +L+V+    +R   +   +   F+V  A++  EA +   KE   + ++ D  M  +   E
Sbjct: 1056 ILIVEDEESIRNFMKERLSPL-FIVETASNGKEALDIIRKEH-IDLVISDVMMPEMNGYE 1113

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++       + + +L  + D +  + G + GA +++ KPF+ + L+  +  L   +
Sbjct: 1114 LCTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLLNNR 1173

Query: 122  KSKDE 126
            + + E
Sbjct: 1174 QKERE 1178


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       +A     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRM-KERIPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFLD 131
              +     L 
Sbjct: 123 AAPERLATVLA 133


>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             L++VD    +R + R   +  G+ VF A     A      +   + +V+D  + G   
Sbjct: 7   KKLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSK-AMSRIMVKERFDLIVLDLMLPGEDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  L  + +    I G   GA+ +L KPFN   L   +  + + Q
Sbjct: 66  LSICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQ 125


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +         +FG  V+ A       E  +K      L++D  M  + 
Sbjct: 1   MAKILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKND-FQLLILDIIMPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   RQ        V  L      E +++G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQKSKD 125
           +   ++ 
Sbjct: 119 RRSGNES 125


>gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900]
          Length = 254

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 230

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A+S  EA    E      ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWDTCKKIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ +++KPF+ E L   +  + 
Sbjct: 60  GWETCKKIRS---FSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNEHKQIQ 126


>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 223

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +    K+
Sbjct: 116 RRVNKKE 122


>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
 gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
          Length = 241

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++VD   IVR++ +   +  G+ V  A    EA +   KE  P  +V+D  M  +   
Sbjct: 9   KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKE-QPQLVVLDVMMPKLDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  L    D    I G   GA+ +++KPF+ + L   +R + + 
Sbjct: 68  SVCQQLRRE---SDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRR 124

Query: 121 QK 122
             
Sbjct: 125 SN 126


>gi|67924013|ref|ZP_00517465.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67854153|gb|EAM49460.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 377

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD +    ++   + ++ G+ V +A +   A      ++ P+ +++D +M  +   
Sbjct: 7   NILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIC-QVPPDLILLDINMPSMNGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++     D+ V ++    D    +     G   ++ KPF  E +   +     +
Sbjct: 66  EVCQQLKEDVKTKDIPVIFISALDDVLDKVKAFDVGGVDYISKPFQTEEVIARIENQLTI 125

Query: 121 QKSKDENQF 129
           Q+ K   Q 
Sbjct: 126 QRQKKRLQQ 134


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKDFDLIILDIMMPNMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 68  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124


>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
 gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G ++ EA    EA +   +      +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPRMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR +   + V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREVRAL---SQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKR 121

Query: 121 QKSKDENQFLDA 132
            ++      +DA
Sbjct: 122 GRAAASEDLIDA 133


>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E      + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|186683870|ref|YP_001867066.1| response regulator receiver modulated serine phosphatase [Nostoc
           punctiforme PCC 73102]
 gi|186466322|gb|ACC82123.1| response regulator receiver modulated serine phosphatase [Nostoc
           punctiforme PCC 73102]
          Length = 378

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D  + ++ + + +    G+ V  A+S  E  E       P  ++ D  M G  
Sbjct: 1   MFQILIIDDDYSIKILLKRMLEKQGYEVVTASSGEEGIEKALA-CHPALIICDWIMPGLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P     F   L         + G  AGA+ F+ KP     L+  +R   
Sbjct: 60  GLEVCQRIKTDPQFFTTFFILLTSLDSVADCVKGLDAGADDFISKPIEHNELQARVRAGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + Q
Sbjct: 120 RLHQLSRDLQ 129


>gi|182412781|ref|YP_001817847.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177839995|gb|ACB74247.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 372

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      +V   +    G+ +  A    +A        + + +++D  M G+  F
Sbjct: 12  RILVVDDQETNLRVLGDMLAHLGYDIVPALDGEQALRRLSSRPV-DLILLDVLMPGLDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ + +L    D   ++    +G   ++ KPFN   L   +R    +
Sbjct: 71  EVCRRIRSNVAWIDIPIIFLSAADDKSLIVRALESGGVDYITKPFNAAELLSRVRTHLAL 130

Query: 121 QKSKDENQFLDA 132
           + ++D  + L  
Sbjct: 131 KTARDRLRQLAE 142


>gi|60680360|ref|YP_210504.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60491794|emb|CAH06552.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1361

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+ +  VR+  R LF    + V EA    E       E +P+ ++ D  M     
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L  + +   ++ G+ +GA+ +++KPFN E L+  +  L  
Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1231 QRERLKR 1237


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 123 SKDE 126
            K E
Sbjct: 126 GKAE 129


>gi|324112763|gb|EGC06739.1| sigma-54 interaction domain-containing protein [Escherichia
           fergusonii B253]
 gi|325496734|gb|EGC94593.1| acetoacetate metabolism regulator (two-component system response
           regulator) [Escherichia fergusonii ECD227]
          Length = 461

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR++    F+  G+    A +  EA     + + P+ +++D  M  +   
Sbjct: 6   RILIVDDEENVRRMLSTAFSLQGYDTHCACNGNEALPLFTR-VQPDVVLMDIRMPEMDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A            +  +    + E  +   R+GA  +++KPF+ + L   ++   Q+Q 
Sbjct: 65  SALKAMRGHNPRTPIVLMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLVVQRALQLQS 124

Query: 123 SKDENQFL 130
            K E + L
Sbjct: 125 MKKEIRQL 132


>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + K+        G  VF A +  +A +    E   + +++D  M     
Sbjct: 5   KKILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIF-NEQQLDLVILDVMMPEYDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L    +    + G   GA+ ++ KPF+ + L   ++ L +
Sbjct: 64  WAVCREIRK---TSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLR 120

Query: 120 MQKSKDENQFLD 131
              ++ +NQ + 
Sbjct: 121 RI-AEHKNQMIS 131


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 241

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD  H +R++      D GF V EA +  E      KE + N +V+D  + G     
Sbjct: 7   ILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPV-NLIVLDLMLPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR      D+ +  L  +      I G   GA+ +L KPF+   L   ++ + +  
Sbjct: 66  LCREVRAQG---DLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRT 122

Query: 122 KS 123
           ++
Sbjct: 123 RN 124


>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
 gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V  A       +   +    +  ++D  + GV 
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDY-DLFILDLMLPGVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    RQ+    +  +  +  + D    I G   GA+ ++ KPF+   L   ++     
Sbjct: 60  GF-EICRQVRDEKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMAR 118

Query: 121 Q-----KSKDENQFLD 131
                  + +EN+ ++
Sbjct: 119 YDRLIGSAAEENKVIE 134


>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
          Length = 226

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++         + V++A S   A E  EK   P+ +V+D  +    
Sbjct: 1   MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++   ++V +  L  + D + ++ G + GA+ ++LKPF+ + L   ++ + 
Sbjct: 59  GLTVCRKIREI---SNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVL 115

Query: 119 QMQKSKDENQFLDA 132
           +  ++      L +
Sbjct: 116 RRTETLSNPNKLSS 129


>gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  + +      G+ VF A +  EA +       P+ +++D +M 
Sbjct: 1   MKENYKILIVDDEQSILDMLKLQLEFEGYTVFIACNAKEALDKL--SYSPDIILLDINMA 58

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+        +R         + +L   V  +  I G  AG + ++ KPF+   L   + 
Sbjct: 59  GMNGLDLCVSIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARIS 115

Query: 116 ELPQMQK 122
              + ++
Sbjct: 116 AHLRREQ 122


>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
 gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14]
 gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter hamburgensis X14]
          Length = 457

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  +A E C +    + +++D  M  +  F
Sbjct: 4   RVLVVDDIPANVKLLEARLSAEYFDVMTASNGAQALEICARAKC-DIVLLDIMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRLRA 133



 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    + +     V   T   EA     +      +V +       L 
Sbjct: 157 RILLVDDRASSYERLASVLSAE-HTVDVETDPSEALFHAAENSYDLLIVSLGLENFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +       +++ G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAIADANSNTRLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|78356985|ref|YP_388434.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219390|gb|ABB38739.1| metal dependent phosphohydrolase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 363

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD +H+   + + +       VF A +  EA E     + P+ +++D  M 
Sbjct: 2   MKRTNRILIVDDNHVNILILKQILEQE-HQVFAAVNGYEALELASGPMKPDIILLDVLMP 60

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +        +++     D+ V ++  + + E   AG   GA  +++KP     +   +R
Sbjct: 61  EMDGYEVCRRLKENDETRDIPVLFVTTQGEEEDEAAGLALGAVDYIVKPVRPSIVLARVR 120

Query: 116 ELPQMQKSKDENQFL 130
              Q++  +D+ + L
Sbjct: 121 NHLQLKTHQDQLEDL 135


>gi|301161893|emb|CBW21437.1| putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis 638R]
          Length = 1361

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+ +  VR+  R LF    + V EA    E       E +P+ ++ D  M     
Sbjct: 1113 KTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNE-IPDLIISDVMMPVKDG 1170

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L  + +   ++ G+ +GA+ +++KPFN E L+  +  L  
Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLIL 1230

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1231 QRERLKR 1237


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    VR+  R   +  G+ VF A    +A E  EKE  P  +++D  M  + 
Sbjct: 1   MK-IVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKE-QPELVILDVMMPRMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D  +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLR--SAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRAAA 121


>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
 gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 5/131 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+++    +  +        G+    A       E       P+ +++D  + G
Sbjct: 1   MSRAHILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTG-RPDLVLLDLMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E    +RQ P   D  V  +    D  + +AG  AGA+ ++ KPF+   L   +  
Sbjct: 60  LEGWEVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEA 119

Query: 117 LPQMQKSKDEN 127
             + +    ++
Sbjct: 120 QLRRRSMARQD 130


>gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 255

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +  V    
Sbjct: 5   ILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKG-QALALQYKPDLILLDLMLPNVDGLT 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    + + +  +      +  + G  +GA+ +L KPF+ E L   ++ L + 
Sbjct: 64  LCQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALLRR 122


>gi|119774853|ref|YP_927593.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767353|gb|ABL99923.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+  +  R++        G  V  AT   EA    EK+  P  +++D  M G+ 
Sbjct: 1   MNKILLVEDDNGFRELLTEALEREGLCVSVATDGFEALTLMEKDT-PELILLDLMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +++      + V  +      E+ I G + GA+ FL KPF+ + L   ++ L + 
Sbjct: 60  GFSMLMQRR---NQLPVIVISALDSEEERIRGYQLGADDFLTKPFSIKELIVRIQALARR 116

Query: 121 QKSKD 125
            K +D
Sbjct: 117 LKRQD 121


>gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 226

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++         + V++A S   A E  EK   P+ +V+D  +    
Sbjct: 1   MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L  + D + ++ G + GA+ +++KPF+ + L   ++ + + 
Sbjct: 59  GLTVC-RKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117

Query: 121 QKSKDENQFLDA 132
            ++      L +
Sbjct: 118 TETLSNPNKLSS 129


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 123 SKDE 126
            K E
Sbjct: 126 GKAE 129


>gi|284036190|ref|YP_003386120.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283815483|gb|ADB37321.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM
           74]
          Length = 350

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LL++ + I+R+    +    G+ V  A +     E    +  P+ ++ D  M    
Sbjct: 1   MKNILLIEDNDIIRENTAEILELSGYRVTTANNGKAGIELALVD-RPDLIICDIMMPVLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  V + P  T +   +L  + + +    G   GA+ +L KPF+   L  A+    
Sbjct: 60  GYGVLHIVNKNPALTGIPFIFLTAKSERDDFRRGMELGADDYLTKPFSESELLSAIESRL 119

Query: 119 QM 120
             
Sbjct: 120 NR 121


>gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
 gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
          Length = 935

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  +R+  R L  D  ++V EA    E      KE +P+ ++ D  M  +   
Sbjct: 685 TVLVIDDNTDIRQYERTLLQDE-YIVLEAADGKEGLAVALKE-VPDLVICDVMMPVMDGL 742

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V  L  +   E    G   GA+S++ KPF+ + L   +  L + 
Sbjct: 743 ELTEQLKTNTATSHIPVIMLTAKNLEEHRAEGYEHGADSYITKPFHSKVLLARIENLLRQ 802

Query: 121 QKSKD 125
           ++   
Sbjct: 803 RQLLK 807


>gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1472

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +  +R   R +F  + F V EA +     E   K  +P+ ++ D  M     +
Sbjct: 1211 TILIVEDNQELRFFIRTIFAQY-FNVIEAENGNIGLEK-SKLYMPDIIISDVMMPEKDGI 1268

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  +R     + + +  L  +   E  I G + GA+ ++ KPF+   L+  +  L + 
Sbjct: 1269 EMVRELRDEMTTSHIPIVMLTAKSTIESKIEGMKLGADDYITKPFSAAYLKARIFNLLEQ 1328

Query: 121  QKSKD 125
            +K   
Sbjct: 1329 RKKLQ 1333


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGV-- 59
            +L VD   + + V ++L    G+ + +A    EA +   E+E LP+ +++D  M G+  
Sbjct: 721 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 780

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+M   + + V  +  +   E ++ G  AG+N +++KPF R+ +   +    +
Sbjct: 781 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 840

Query: 120 MQ 121
            +
Sbjct: 841 FR 842


>gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 230

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    +    R    +FG  V  A     A    +K  + + LV+D  M  + 
Sbjct: 6   MAKILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKG-VFDLLVLDVIMPKMD 64

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   R            L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 65  GLEVCRQFRLKEGY-HTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 123

Query: 119 QMQKSKDENQF 129
           +  + + + Q 
Sbjct: 124 RRGRERPDRQL 134


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 3/116 (2%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IA 64
           V+    +  + R    + GF VFE+ S   A +    E   + ++ID  + G+       
Sbjct: 2   VEDDADISSLLRFSLENTGFSVFESPSAEAAMQIL-TERRTDLVIIDWMLPGMDGLNLTK 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +R       + +  L    D    I G  +G + ++ KPF+   L   +  L + 
Sbjct: 61  TLRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRR 116


>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
 gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 12/138 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + K+ +      GF+V        A E   K    + +++D  + G+  
Sbjct: 4   KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKY-DLVLLDLMLPGLDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +   +  L  + D E+ + G   GA+ ++ KPF    L   +  + +
Sbjct: 63  YQVCQKIRE---TSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLR 119

Query: 120 MQK------SKDENQFLD 131
             +      ++ E   L+
Sbjct: 120 RIEQDHEEVNRKEGNRLE 137


>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L+V+    +R   +       F V EA +  E  E   K   P  +V+D  + G  
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PEVVVLDIMLPGVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     ++ +  L  +      ++G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117

Query: 119 QMQKSKDE 126
           +   +  E
Sbjct: 118 RRVNAVKE 125


>gi|315180653|gb|ADT87567.1| Response regulator [Vibrio furnissii NCTC 11218]
          Length = 241

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++     +  GF V   +      ++      P+ +++D  + G   
Sbjct: 4   THILVVDDDIEICELLDEYLSKSGFSVATVSDGRALAQYLTDHGYPDLVLLDVMLPGEDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    ++V +  L    D    I G   GA+ ++ KPF+   L   ++ L +
Sbjct: 64  FTLCQKIRRD---SNVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120

Query: 120 MQKSKDE 126
             +  +E
Sbjct: 121 RVQVNEE 127


>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 235

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    +     A+   +  +LP+ +++D  + 
Sbjct: 1   MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L+     R       + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    VR+V        G+ V  A    +A E   +E  P+ +V+D  +  +  F
Sbjct: 25  TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRES-PDLVVLDVMLPKLDGF 83

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 84  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 235

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF    +     A+   +  +LP+ +++D  + 
Sbjct: 1   MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDA-VLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L+     R       + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKD 125
            + + +  + 
Sbjct: 120 AVLRRRAPEQ 129


>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 235

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +R +   +     ++V  A +   A +  +    P+ +V+D  +    
Sbjct: 1   MKKILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDA-FGPDLVVLDLMLPDCS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +        V V  L  + +    + G   GA  ++ KPF+   L   ++ + 
Sbjct: 60  GYDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVIL 116

Query: 119 QMQKSKDE 126
           +  +SK+E
Sbjct: 117 RRNESKEE 124


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLV+    + ++ +  F+   F V       EA     +E  P+ +++D  +EG   +
Sbjct: 5   RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEAL-LLARENPPDIMLLDWMVEGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+ P   ++ +  L    + +  I G   GA+ ++ KPF+   L   +  + + 
Sbjct: 64  EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123

Query: 121 QKSKDENQFL 130
            +     + L
Sbjct: 124 IRPALSKEQL 133


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A +  EA     +    N +++D  M     +
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKY-NLIILDLMMPKVDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 64  EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120


>gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 242

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA    E      ++++D  M  + 
Sbjct: 18  MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIE-NRNFKFVLLDIMMPKMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     +++ +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 77  GWETCKKIRS---FSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVL 133

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 134 RRTNEHKQIQ 143


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 225

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    VR + +   +  GF+V  A           ++  P+ +++D  + G+   
Sbjct: 4   RILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAV-RDRPPDLVILDVMLPGLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +  ++ V  L      ++ + G   GA+ ++ KPF+ + L   +R   + ++
Sbjct: 63  EVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRE 122


>gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +  + ++     G+    A +  EA E   +  + N +++D  + G+  
Sbjct: 4   TTILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAV-NMVLLDIMLPGIDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ    +D+ +  L  + +    + G   G + +++KPF+   L   +R + +
Sbjct: 63  FEVCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 120 MQKSKDEN--QFLDA 132
             +    N  + L A
Sbjct: 123 RDRRNRSNVQEVLRA 137


>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
 gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
 gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       +A     ++  PN +++D  +  + 
Sbjct: 1   MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSF-QQRKPNLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 229

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 226

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++         + V++A S   A E  EK   P+ +V+D  +    
Sbjct: 1   MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++   ++V +  L  + D + ++ G + GA+ +++KPF+ + L   ++ + 
Sbjct: 59  GLTVCRKIREI---SNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVL 115

Query: 119 QMQKSKDENQFLDA 132
           +  ++      L +
Sbjct: 116 RRTETLSNPNKLSS 129


>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  + +++    + ++  + F   GF V    +   A E   KE  P+ +V+D  M    
Sbjct: 1   MALIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHI-KEDKPDAVVLDLMMPEID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LEF   VR     +   +  L  +      I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GLEFCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVI 119

Query: 119 QMQKS 123
           +  KS
Sbjct: 120 RRSKS 124


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ +  + +  +      GF+V  A    E  +        + +++D  + G+ 
Sbjct: 1   MK-ILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALS-YNYDCIILDIILPGMS 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R     + V +  L      E  + G   GA+ ++ KPF+   L   +R L 
Sbjct: 59  GIEICRFLR-DEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALI 117

Query: 119 QMQKSKDEN 127
           +  +   + 
Sbjct: 118 RRNQVVRQE 126


>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 236

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G++V  A    EA E       P  +V+D  +     
Sbjct: 3   QKVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATN-PELIVLDVMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R       V +  L  + D    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IEVCKSIRSDKNL--VPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILR 119

Query: 120 MQKSKDE 126
                +E
Sbjct: 120 RSAIVNE 126


>gi|260173192|ref|ZP_05759604.1| histidine kinase [Bacteroides sp. D2]
 gi|315921466|ref|ZP_07917706.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695341|gb|EFS32176.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1376

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 18/143 (12%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++LLVD +H +  + R  F    + +  A    EA + C +  LP+ ++ D  M  +  +
Sbjct: 1133 TILLVDDNHEILMILREYFVKE-YNIIMAIDGQEALDKCNRS-LPDMIISDVMMPRMNGI 1190

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
            E  A +++      + +  L  +   E  I G   GA++++ KPFN   L+  +R L   
Sbjct: 1191 ELCATLKKNLQTCFIPIILLTAKSQIEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNK 1250

Query: 120  -------------MQKSKDENQF 129
                          Q+ +D+ Q 
Sbjct: 1251 SHQMRNLPTTNNVRQEIQDKRQR 1273


>gi|253571309|ref|ZP_04848716.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251839262|gb|EES67346.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1333

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +    G+ +   ++  +A     KE  P+ ++ D  M  +  
Sbjct: 1081 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDAL-VIIKEFNPDLVISDIMMPEMSG 1138

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + ++ G   GA++++ KPF+   L+  ++ +  
Sbjct: 1139 DELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNILA 1198

Query: 120  MQKSKDE 126
             ++   +
Sbjct: 1199 NRELLRQ 1205


>gi|229142249|ref|ZP_04270771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228641187|gb|EEK97496.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 230

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+V+   I+R+   H F+  G+ V  A       +   E+E   + +++D  +  +
Sbjct: 5   MKKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLM 64

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 65  DGWSVCRRIRKN---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121

Query: 118 PQMQKSKDENQ 128
            +    + + Q
Sbjct: 122 FKDTNQQVQYQ 132


>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
            23134]
 gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
            23134]
          Length = 1269

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGV-- 59
             +L+VD   +  +V  +  +   + + +A+   +A +  ++   P + +++D  M  +  
Sbjct: 886  KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    +R+     ++ V  L  +   + ++ G  AGAN +L KPF++  L   ++    
Sbjct: 946  YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELLSRIKTHVL 1005

Query: 120  MQ----KSKDENQFLDA 132
            ++      +  N+ L  
Sbjct: 1006 LKLTSENLQTANEKLQE 1022


>gi|29349146|ref|NP_812649.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341054|gb|AAO78843.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1330

 Score =  141 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +    G+ +   ++  +A     KE  P+ ++ D  M  +  
Sbjct: 1078 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDAL-VIIKEFNPDLVISDIMMPEMSG 1135

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + ++ G   GA++++ KPF+   L+  ++ +  
Sbjct: 1136 DELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNILA 1195

Query: 120  MQKSKDE 126
             ++   +
Sbjct: 1196 NRELLRQ 1202


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+  +  G+ V       +A     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRL-KERVPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFL 130
              +     L
Sbjct: 123 ASPERLANVL 132


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A S  +A E   +EL P   ++D  M G+  F
Sbjct: 11  KVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMA-RELKPEAYILDVMMPGMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D  V +L  +   E  I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 70  ELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 127


>gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
 gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
          Length = 242

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+ +    +R   R L +  G+ + EA +   A E        + +++D  M G+  
Sbjct: 4   QTILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVFR--PEVDLVILDIMMPGMSG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++   + V + +L  +      + G  AG + +L KPF+   L   ++ L +
Sbjct: 62  LRVCEELRKL---STVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family),
           BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278]
          Length = 231

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R+V R   +  G  V EA     A      +  P+ +V+D  M     L
Sbjct: 4   RILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARF-ADDRPDLIVLDVGMPEFDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     + V + +L    +    I G   G + ++ KPF+   L   +  + + 
Sbjct: 63  EVCRRIR---RTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRR 119


>gi|300914725|ref|ZP_07132041.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter sp. X561]
 gi|307724041|ref|YP_003903792.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter sp. X513]
 gi|300889660|gb|EFK84806.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter sp. X561]
 gi|307581102|gb|ADN54501.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacter sp. X513]
          Length = 310

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+VD + + RK+ + +  + G+ V EA    EA +   K  LP+ +++D  M G
Sbjct: 1   MKGRNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIY-KNKLPDMVILDIVMPG 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F  +  +R+      + +  L  + +FE+ I G   GA+ +L+KPFN + L F +  
Sbjct: 60  MTGFDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKVNN 119

Query: 117 LPQMQK 122
           L Q  +
Sbjct: 120 LFQRIE 125


>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. 83/13]
 gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M28]
 gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M5-90]
          Length = 228

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-IQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V YL    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|218131895|ref|ZP_03460699.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697]
 gi|217986198|gb|EEC52537.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697]
          Length = 1239

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +H +R+   H   +  F V  A    +A E    EL P+ +V D  M  +  F 
Sbjct: 996  ILIVEDNHALREFMVHPLREH-FRVTTADDGQQAWEMM-NELQPDLVVSDVVMPRMDGFE 1053

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L    D    + G   GA+++L KPF+   L   +  + + +
Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIRNR 1113

Query: 122  K 122
            +
Sbjct: 1114 R 1114


>gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 231

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + +V         + VF+A +  +A E  EKE   + +++D  +  +  
Sbjct: 4   KNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKEN-ISLIILDLMLPDITG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L  +V+   ++ G   GA+ ++ KPF  + L   ++ + +
Sbjct: 63  EEICKKIRK---TSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|17228133|ref|NP_484681.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17129983|dbj|BAB72595.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 438

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    +V      D GF V  ATS   A +  E+  LP+ +++D  M G+  F 
Sbjct: 26  VLIVDDTPTNLEVVSETLGDAGFDVAIATSGDRALQQVER-RLPDLILLDVMMPGIDGFE 84

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + + ++    D E  +     GA  +++KPF  + +   +    Q+ 
Sbjct: 85  TCRRLKANDRTCHIPIIFMTALCDSESKVKALELGAVDYIVKPFYEKEVLARVSTHLQLS 144

Query: 122 KSKD 125
           +   
Sbjct: 145 QLTQ 148


>gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51]
 gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D   I+ +         GF    A    EA +    E  P+ +++D  M     +E
Sbjct: 7   ILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAY-ETAPDLIILDLMMPKLSGME 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    TDV +  L  + +    I G   GA+ +++KPF+   +   ++ + + +
Sbjct: 66  VCRTLRK---TTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRK 122


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    GF V    +  +A    ++    + +++D  + G  
Sbjct: 1   MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGA-DLVLLDLQLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ      V V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQRSS---VPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 119 QMQKSKDEN 127
           + Q   +E 
Sbjct: 117 RRQGEPEEL 125


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK   P+ +V+D  +  +  F
Sbjct: 13  SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-TQPDLIVLDVMLPDIDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V YL    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 72  TVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 131

Query: 123 SKDEN 127
            + E+
Sbjct: 132 EQVED 136


>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 230

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    + ++ R      GF V       +A     ++  P+ +++D  +  + 
Sbjct: 4   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQF-QQRKPSLMILDLMVPRMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 63  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 119

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 120 RRLERKAEPEQ 130


>gi|153870034|ref|ZP_01999517.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp.
           PS]
 gi|152073497|gb|EDN70480.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp.
           PS]
          Length = 448

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    +R + + +  D GF V  A     ARE    E  P+ +++D  M  +    
Sbjct: 5   ILVVDDEPDIRSLMKEILEDEGFTVSVAQDGKTARE-LRSEKHPDLILLDIWMPDIDGIS 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +   R+  +  D  V  +      E  +   R GA  F+ KP +   L   ++   +M 
Sbjct: 64  LLKEWRESGMTLDSQVIMISGHGTVETAVEATRLGAYDFIEKPVSIAKLLLTIKRALEMA 123

Query: 122 KSKDEN 127
             + EN
Sbjct: 124 SLQQEN 129


>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 228

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D  + + ++        G  V    +  +      +    + +++D  + G+ 
Sbjct: 1   MEKILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQAVEHY--DLVILDVMLPGMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +RQ+   ++V V  L    +    I G   GA+ +L KPFN   L   +R + + 
Sbjct: 59  GF-DVLRQVRQSSEVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRR 117

Query: 121 QKSKDEN 127
             ++++ 
Sbjct: 118 TDNRNQM 124


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 123 SKDE 126
            K E
Sbjct: 126 GKAE 129


>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFILLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF V  A     A E      + + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNV-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
 gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
          Length = 238

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLLVD    +R++ +      G+++ EA    EA E     +  + +V+D  M G+  
Sbjct: 5   QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKAL-HIDYDLIVLDLMMPGIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            I   +Q+       +  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 64  -IEACKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|284040223|ref|YP_003390153.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819516|gb|ADB41354.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 236

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + ++ +      G+    A    +  +        +  + D  M    
Sbjct: 1   MATILLVEDDPNLGQLVQEYLTMKGYPTDRAIDGNQGLQLFMAGKY-DLCIFDVMMPKKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           DV + +L  +   E  I G +AGA+ ++ KPF+ E L   ++ + + 
Sbjct: 60  GFTLAKEVRMDHRDVPIIFLTAKSMQEDTIQGFKAGADDYMTKPFSMEELLLRIQAILRR 119

Query: 121 QKSKDE 126
            +   E
Sbjct: 120 YQRSTE 125


>gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330]
 gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330]
 gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 226

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++         + V++A S   A E  EK   P+ +V+D  +    
Sbjct: 1   MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L  + D + ++ G + GA+ +++KPF+ + L   ++ + + 
Sbjct: 59  GLTVC-RKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117

Query: 121 QKSKDENQFLDA 132
            ++      L +
Sbjct: 118 TETLSNPNKLSS 129


>gi|298530355|ref|ZP_07017757.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509729|gb|EFI33633.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 361

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++++D +    K+ + +    G+ V        A +   ++  P+ +++D  M G+  
Sbjct: 8   KNIMIIDDTPANLKLLQEMLQGRGYRVMAFPQGEMALKAAARKP-PDLILLDIRMPGLDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F      ++     D+ V ++    D    +    AG   ++ KPF+ E +   +    +
Sbjct: 67  FQVCTRFKEQEGLKDIPVIFISALNDPSDKVQAFAAGGVDYVTKPFHPEEVHARVATHIR 126

Query: 120 MQKSKDENQ 128
           ++  + + +
Sbjct: 127 LRGLQKQVE 135


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        G+ V       E  +       P+ +V+D  M G    
Sbjct: 5   KILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARE-LQRKLARNRPDLMVLDVMMPGEDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L    +    I G   GA+ +L KPFN   L   ++ + +   
Sbjct: 64  AVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHN 123

Query: 123 S 123
           +
Sbjct: 124 A 124


>gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 252

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R +        G     A    E +   E+  + + +V+D  + G     
Sbjct: 8   ILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRV-DLIVLDLMLPGEDGLT 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              ++R      +  +  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 67  LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRA 126

Query: 122 KSKDEN 127
           ++   N
Sbjct: 127 RALPPN 132


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+    A    +A         P+ +++D  M  +   
Sbjct: 12  RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKA-TSFHPDVVILDVQMPRMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ V +L         + G RAGA+ ++ KPF+ + +   +  L +   
Sbjct: 71  ETLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAG 130

Query: 123 SKDE 126
              +
Sbjct: 131 RTQQ 134


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +  +        G+ V  A    +A E       P+ +++D  +     +
Sbjct: 5   KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAF-NDNPDLILLDLMLPKKDGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR      ++ +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  EVCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120

Query: 121 QKSKDEN 127
              + E 
Sbjct: 121 VTKQQEE 127


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +          A         PN +++D  + G+  
Sbjct: 5   QRILIVDDDENIAELISLYLTKECYETKIVYDGESALSEL-SVFKPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+     +V +  L  + +    + G   GA+ +++KPF  + +   ++ + +
Sbjct: 64  YQVCREIRKN---NNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLR 120

Query: 120 MQKS 123
               
Sbjct: 121 RYHM 124


>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  V +       + V  A    EA +   KE+  + +++D  + 
Sbjct: 1   MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLF-KEISFHLVILDLMLP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +      + +R+    ++V +  L  +V+ E  + G   GA+ +L KPF+   L   ++
Sbjct: 60  KISGEEVCSKIRE---FSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVK 116

Query: 116 ELPQM 120
            L + 
Sbjct: 117 ALIRR 121


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDE 126
               +
Sbjct: 121 DLTQK 125


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +  + R    D G+ +       +A    EK+ + + +++D  + GV  
Sbjct: 3   KTILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQ-VWDAVILDLMLPGVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   + V  +         + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 62  LEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQ 121

Query: 122 KSKDENQFLDA 132
           ++  +N  +DA
Sbjct: 122 EAMGQNLLMDA 132


>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
          Length = 228

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++         + V +A S  EA +   KE   + +++D  M  +
Sbjct: 1   MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLI-KENNFDLVILDIMMPKM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +       ++ + +L  +     +I G   GA+ ++ KPF+   L   ++   +
Sbjct: 60  DGLETLIHIRKDF-NMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    GF V    +  +A    ++    + +++D  + G  
Sbjct: 1   MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGA-DLVLLDLQLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ      V V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQRSS---VPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 119 QMQKSKDEN 127
           + Q   +E 
Sbjct: 117 RRQGEPEEL 125


>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 228

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       EA +    +  P+ +++D  +  + 
Sbjct: 1   MKHVMLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFL-QRKPSLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +    K E + 
Sbjct: 117 RRLDRKAEPEQ 127


>gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLLV+    + +      +  G+ V  A+   +A          + +++D  +  + 
Sbjct: 1   MTRLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPDLD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G +  +  L    D    + G  AGA+ ++ KPF    L+  +R L + 
Sbjct: 61  GLEVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRR 120

Query: 121 QKSKDE 126
            ++ +E
Sbjct: 121 SQATEE 126


>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    + +VD    +R++        G++     S  EA    E+E  P+  V+D  + G
Sbjct: 1   MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAIT-LEQENPPDLWVLDIMLPG 59

Query: 59  V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +   EF   +R    G++  +  +    +    I G   G++ +L KPF+   L   +  
Sbjct: 60  MNGYEFCRRIRA---GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNR 116

Query: 117 LPQM---QKSKDENQFLDAI 133
             Q     KS  E   + A+
Sbjct: 117 ALQRWKQMKSHAEQTAISAL 136


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +LL D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---YKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|189425047|ref|YP_001952224.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter lovleyi SZ]
 gi|189421306|gb|ACD95704.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Geobacter lovleyi SZ]
          Length = 435

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +LLVD       +      D  + +  A S   A E   +E  P  +++D  M  +  +E
Sbjct: 11  ILLVDDVPSNLHLLVAALKD-DYRIKTAVSGQAALELAAREDRPELILLDIMMPEMNGIE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R  P    + V ++  +   +  ++G   GA+ +L KP     L+  +R L Q +
Sbjct: 70  VLRRLRDTPDTAGIPVIFVTADNSEQSQLSGLELGADDYLTKPVVTAVLKVRVRNLLQRK 129

Query: 122 KSKDENQF 129
           + + E + 
Sbjct: 130 RIERELRL 137


>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
 gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 237

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V ++ +      GF V             ++E  P+ +++D  + G    
Sbjct: 6   KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDREN-PDVVILDIMLPGQDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +     + +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 65  SLCRRLRAV---RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR 121

Query: 121 QKSKD 125
            ++ D
Sbjct: 122 SQAAD 126


>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
 gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 6 str. 870]
 gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 5 str. 513]
 gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 3 str. 686]
 gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M163/99/10]
 gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis B2/94]
 gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M644/93/1]
 gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M13/05/1]
 gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 4 str. 292]
 gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M292/94/1]
 gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           neotomae 5K33]
 gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 3 str. Ether]
 gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 9 str. C68]
 gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
 gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
          Length = 228

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V   T+  E  +       P+ L++D  M G+  F
Sbjct: 8   RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARA-FRPDALILDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D  V +L      E  + G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 67  GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAG 126

Query: 123 SKDENQ 128
             D+ Q
Sbjct: 127 HSDDKQ 132


>gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium]
          Length = 228

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++         + V++A S   A E  EK   P+ +V+D  +    
Sbjct: 3   MK-ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNN-PDLVVLDLMLPDTD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L  + D + ++ G + GA+ +++KPF+ + L   ++ + + 
Sbjct: 61  GLTVC-RKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 119

Query: 121 QKSKDENQFLDA 132
            ++      L +
Sbjct: 120 TETLSNPNKLSS 131


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +     +L    GF V  A    +A    E+    + +++D  + G  
Sbjct: 1   MTRILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGA-DLVLLDLMLPGQP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E I  +R     + V V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVIRQIRLN---SQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVL 116

Query: 119 QMQKSKDEN 127
           + Q   +E 
Sbjct: 117 RRQGEGEEL 125


>gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 229

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ V+ A +  E     +K + P+ +++D  M  +  
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKK-VHPDLIILDIMMPKMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R +P   + F+ +L    +    IAG   GA+ ++ KP     L   +  + +
Sbjct: 65  IEACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124

Query: 120 MQKSKD 125
              S D
Sbjct: 125 RNSSTD 130


>gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 254

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 224

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD    +  + +  F   G+ V+ A S  +A +   K   P+ +++D +M     
Sbjct: 3   NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN--PDIILLDINMPEIDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         + +L   ++    I G RAGA+ +++KPF+ + L   +    +
Sbjct: 61  IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117

Query: 120 MQKSKD 125
            ++ K 
Sbjct: 118 REQRKS 123


>gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
 gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
          Length = 240

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF +  A +  +  +        + +V+D  + G    
Sbjct: 6   KVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQ-MDRLLTRESIHLIVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 601

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD + +  ++   + +D G+ V +A +   A    +    P+ +++D  M      E
Sbjct: 13  ILIVDDTPMNLRLLSTMLSDQGYEVRQAINGKMALTAVQT-CPPSLILLDIMMPDIDGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + ++  P   D+ + +L    D    +   + G   ++ KPF  E +   ++    ++
Sbjct: 72  VCSFLKNDPQTADIPIIFLSALDDVLDKVKAFKVGGVDYITKPFEFEEILARVKNQLALK 131

Query: 122 KSKDENQFLDA 132
            +K +   L++
Sbjct: 132 DAKSKLSTLNS 142


>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L  + D    I G   GA+ +L KPFN   L    + + + 
Sbjct: 66  SICRRLRQKENT--IPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123

Query: 121 QKSKD 125
           + ++ 
Sbjct: 124 KSAEA 128


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|317474497|ref|ZP_07933771.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316909178|gb|EFV30858.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1239

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +H +R+   H   +  F V  A    +A E    EL P+ +V D  M  +  F 
Sbjct: 996  ILIVEDNHALREFMVHPLREH-FRVTTADDGQQAWEMM-NELQPDLVVSDVVMPRMDGFE 1053

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L    D    + G   GA+++L KPF+   L   +  + + +
Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIRNR 1113

Query: 122  K 122
            +
Sbjct: 1114 R 1114


>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 224

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +         +FG  V          +   ++   + L++D  M    
Sbjct: 1   MAKILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKIL-QDKPFDLLILDIIMPKIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQM     + V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLELCRLYRQMFGY-QIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRNK 122


>gi|119944737|ref|YP_942417.1| response regulator receiver modulated diguanylate cyclase
           [Psychromonas ingrahamii 37]
 gi|119863341|gb|ABM02818.1| response regulator receiver modulated diguanylate cyclase
           [Psychromonas ingrahamii 37]
          Length = 322

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD      KV   L     +  F AT+  +A E   + + P+ +++D  M  +  
Sbjct: 7   QKVLIVDDIKDNIKVLIDLLKPE-YKTFFATNGEKALELA-QNMSPDIILLDIVMPEMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++  P+  D+ V ++    D      G   GA  ++ KP +   ++  ++   +
Sbjct: 65  FEVCQKLKSNPITCDIPVIFISAMSDIGDETKGLEVGAVDYITKPISPAIVKARVKNHLK 124

Query: 120 MQKSKDENQFL 130
           +Q++  E + L
Sbjct: 125 LQEAMQELKRL 135


>gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1052

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+    +RK       D  +   EA +  +  E   KE LP+ L+ D  M  +    
Sbjct: 804 VLVVEDQEQLRKFICECLGDQ-YRYMEAENGIQGVEMA-KEYLPDILISDVMMPEMNGVE 861

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++   L + + +  L  + D E    G   GA+ +L KPF+   L+  +R + +++
Sbjct: 862 LCGELKNNDLTSHIPIILLTAKSDQEDKEVGLEIGADDYLTKPFSVAELKLRVRNILRLR 921

Query: 122 KSKD 125
           ++  
Sbjct: 922 QALR 925


>gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1342

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R++   LF+   + V+EA    E  E   KE+ P+ ++ D  M  +  +
Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1149

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  I G + GA+ ++ KPFN + L      L   
Sbjct: 1150 EMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVNG 1209

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1210 RKLLQK 1215


>gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1333

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R++   LF+   + V+EA    E  E   KE+ P+ ++ D  M  +  +
Sbjct: 1083 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1140

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  I G + GA+ ++ KPFN + L      L   
Sbjct: 1141 EMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVNG 1200

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1201 RKLLQK 1206


>gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 598

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +     +   + +  G+ V EA     A +      LP+ +++D  M  +    
Sbjct: 14  ILIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEV-NNKLPDLILLDIMMPDIDGYA 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   +V + +L    D    +     G   ++ KPF  + +   ++    ++
Sbjct: 73  VCNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQLTLR 132

Query: 122 KSKDENQFLD 131
           +++ + Q L+
Sbjct: 133 RTQQQLQVLN 142


>gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1342

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R++   LF+   + V+EA    E  E   KE+ P+ ++ D  M  +  +
Sbjct: 1092 KILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1149

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  I G + GA+ ++ KPFN + L      L   
Sbjct: 1150 EMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVNG 1209

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1210 RKLLQK 1215


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 224

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD    +  + +  F   G+ V+ A S  +A +   K   P+ +++D +M     
Sbjct: 3   NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN--PDIILLDINMPEIDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         + +L   ++    I G RAGA+ +++KPF+ + L   +    +
Sbjct: 61  IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117

Query: 120 MQKSKD 125
            ++ K 
Sbjct: 118 REQRKS 123


>gi|307153247|ref|YP_003888631.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306983475|gb|ADN15356.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 379

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +    ++   + ++ G+ V +A +   A    +  + P+ +++D +M G+   
Sbjct: 5   NILVVDDTPDNVRLLATMLSEKGYKVRKALNGQIAINTVQT-VPPDLILLDINMPGMNGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                ++      D+ V ++    D    +   + G   ++ KPF  E +   +      
Sbjct: 64  QVCQALKSDEKTQDIPVIFISALDDVLDKVKAFKVGGVDYITKPFQGEEILVRVENQLTI 123

Query: 120 -MQKSKDENQFLD 131
             QK + + + LD
Sbjct: 124 CRQKKQLQQEILD 136


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    +A         P+ LV+D  M  +   
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALN-VIANDRPDALVLDVMMPKLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L + 
Sbjct: 63  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120


>gi|153868803|ref|ZP_01998544.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074620|gb|EDN71457.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 326

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD +     V   +  + G++   ATS  EA  +  KE  P  +++D  M 
Sbjct: 1   MKKKPTILIVDDNPTNLGVLGSIIAENGYLPGFATSGIEALAYL-KEKHPKLILLDIMMP 59

Query: 58  GVLEF--IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            +  F     +RQ      ++ + +L  + + E +I G   GA  ++ KPFN+  L   +
Sbjct: 60  DMDGFEVCRRLRQNATLAANIPIIFLTAKTEKEDVITGLELGAVDYVTKPFNKNELLTRI 119

Query: 115 RELPQMQKSKDENQ 128
               ++Q +K+E +
Sbjct: 120 NTHLELQATKEELK 133


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  141 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L++D    + ++ +       + V  +    +      KE+ P+ +++D  +     
Sbjct: 3   TKVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKA-KEIKPDLILLDWMLPNISG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E +  +R      ++ V  L  +      + G   GA+ ++ KPF+ + L   +  + +
Sbjct: 62  IEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLR 121

Query: 120 MQKSK---DENQFL 130
                   +EN  L
Sbjct: 122 RYNLTSLGEENNIL 135


>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          G+   EA +  +A    ++       ++D  + G+ 
Sbjct: 1   MRKVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R   +   + +  L         + G   GA+ ++ KPF+   L   +  L + 
Sbjct: 61  GFEVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRR 120

Query: 121 QKSKDEN 127
              ++E 
Sbjct: 121 TGGEEEE 127


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +         +FG  V+ A       E  +K      L++D  M  + 
Sbjct: 1   MAKILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKND-FQLLILDIIMPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   RQ        V  L      E +++G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLQLCKQYRQRFGY-HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQKSKD 125
           +   ++ 
Sbjct: 119 RRSGNES 125


>gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E   KE   + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1298

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E   KE   + +V D  M  +   
Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1106

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1107 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1166

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1167 RRRMLE 1172


>gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1298

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E   KE   + +V D  M  +   
Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1106

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1107 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1166

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1167 RRRMLE 1172


>gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E   KE   + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|255037318|ref|YP_003087939.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950074|gb|ACT94774.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+    +    +     + + V  AT   EA +F  KE   +  V+D  +  +  
Sbjct: 3   KRILYVEDDPNLAFATKDNLEQYDYEVVHATDGAEALDFFGKEH-FDICVLDIMLPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +     + V + +L      +  I G + GA+ ++ KPF+ E L+  +    +  
Sbjct: 62  FTLAEKIRASDSQVPILFLSARSMQDDKIKGLKLGADDYITKPFSIEELKLRIDVFLRRS 121

Query: 122 KS 123
           K+
Sbjct: 122 KA 123


>gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 223

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA      EL P+ ++ D  M  +  
Sbjct: 23  KKLLLIDDDPNLILLVKDYLEFRGYQVVTAGNGREALTMLP-ELSPDMIICDVMMPEMDG 81

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  +RQ P  + + + +L  +   +  + G   GA+ +++KPF  E L   +    +
Sbjct: 82  YAFVEQIRQDPSKSWIPILFLSAKGQSQDRVKGLTTGADVYMVKPFEPEELVAQVESSLK 141

Query: 120 M 120
            
Sbjct: 142 Q 142


>gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E   KE   + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+++    + +V +      G+    A +  +      +E   + +++D  +  +  
Sbjct: 3   NRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQY-REQQWDLILLDIMLPEMSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                R     +   V  L  + + E  + G   GAN ++ KPF  E L   +R   +
Sbjct: 62  IDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119


>gi|17232372|ref|NP_488920.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134017|dbj|BAB76579.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    ++        GF V  A    +A E  +   +P+ +++D  M  +  F 
Sbjct: 11  ILIVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQI-RVPDLILLDVMMPIMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++  P   D+ V ++    D    +     GA  ++ KPF++  +   +    Q++
Sbjct: 70  TCKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISSHLQLR 129

Query: 122 KSKDENQ 128
                 +
Sbjct: 130 SLNKNLE 136


>gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +         +  + VF+A    EA E  EKE   + +++D  M  + 
Sbjct: 1   MYNVLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEE-IHLVLMDVMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + V +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 60  GTSATIKIRE-NSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRR 118


>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V ++ +      GF V             ++E  P+ +++D  + G    
Sbjct: 6   KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDREN-PDVVILDIMLPGQDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +     + +  L  + +    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 65  SLCRRLRAV---RMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR 121

Query: 121 QKSKD 125
            ++ D
Sbjct: 122 SQAAD 126


>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
 gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +R++         + V EA     A    E++  P  +++D  + G   +
Sbjct: 4   KILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEEQ--PQLILLDWMLPGRSGI 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            FI ++++      + +  L      E  I    AGA+ ++ KPF+ + L   +  L + 
Sbjct: 62  MFIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRR 121


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+    +  + R    D G+ +        A    +K+ + + +++D  +     
Sbjct: 5   KKILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQ-VWDAVILDLMLPHVDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRRIRQMARY--LPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L+
Sbjct: 122 RQEAMGQNIRLE 133


>gi|163786994|ref|ZP_02181441.1| two-component system, transcriptional regulatory protein
           [Flavobacteriales bacterium ALC-1]
 gi|159876882|gb|EDP70939.1| two-component system, transcriptional regulatory protein
           [Flavobacteriales bacterium ALC-1]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +       + +      G+ +  A    EA E   K    N  V D  M  + 
Sbjct: 1   MKHILLAEDDLDFGNILKQYLEISGYTITWAKDGKEALELF-KNGAYNICVFDVMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + + L  ++   +L      E  I G + GA+ +++KPF  + L   +  + + 
Sbjct: 60  GFTLAEKVVDLNPEIPFIFLTARKLKEDKIKGLKLGADDYIVKPFEADELVLRLNNILKR 119

Query: 121 -QKSKDENQFLDAI 133
            +K   + Q  + I
Sbjct: 120 TEKIATQLQQSETI 133


>gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
 gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase
           [Maricaulis maris MCS10]
          Length = 454

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      ++         F V  AT+  +A    + E  P+ +++D  M  +   
Sbjct: 4   RILVVDDQAANVRLLEARLQAEYFEVCTATNGADAIAVAKAE-QPDLILLDVMMPVMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++  P    + V  +      E  I G  AGA+ FL KP +  ++   +R L ++
Sbjct: 63  DTCSRIKDDPATRHIPVVMVTALDQREDRIRGLEAGADDFLTKPIDDVSMFARIRSLLRL 122

Query: 121 QKSKDENQFLDA 132
           ++  DE ++ ++
Sbjct: 123 KEVLDELRYRES 134



 Score = 68.7 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 27  MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVFVYYLLMEV 84
            + E     EA          + L++D +  G       A +R       + +  ++   
Sbjct: 177 EILETHDPAEAI--IAARNDADLLIVDLTSPGYDGLRLCARIRSDAATRQLPILAVVRPA 234

Query: 85  DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ 128
           D ++ +     G N  + +P +   L    R   + ++  D+ +
Sbjct: 235 DVQQAVRALDLGVNDIIQRPVDAGELAARSRTQLRRKRYADQLR 278


>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 230

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++      D  +   +A           +    + +++D ++  + 
Sbjct: 1   MKQILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDY-DLILLDLTLPIMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      +  V  L  + +    + G   GA+ +L KPF+   L   ++ + 
Sbjct: 60  GIEVCKKLRIK---KNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRSDA 121


>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 242

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 2/129 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLVD    + ++  +  +  G+    A     A +    E   +++++D  +  +
Sbjct: 1   MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHY-DFILLDIMLPQL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G +  +  +  + D    +     GA+ ++ KPF+   L   ++ + +
Sbjct: 60  DGIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILR 119

Query: 120 MQKSKDENQ 128
               +D  Q
Sbjct: 120 RTDKEDNRQ 128


>gi|224537021|ref|ZP_03677560.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521329|gb|EEF90434.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1332

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +     + +       + +  AT+  +A E    E + + +V D  M  +   
Sbjct: 1082 TILLVDDNEEFLLLMKRKLATH-YNILTATNGKKALEIVRSEDV-DLMVSDYMMPEMDGI 1139

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               A ++Q    + + V  L  +   E  +    AGAN +L KPF+ + L   +  L + 
Sbjct: 1140 ELCATMKQDINTSHIPVLMLTAKSSVEDQVRCFNAGANGYLTKPFDMKMLNARIDNLMKS 1199

Query: 121  QKSKDENQFLD 131
             + + E   +D
Sbjct: 1200 NQKRQEKFRVD 1210


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++++D    + ++        G+ V       +A E   K+   +  ++D  + G+  
Sbjct: 4   RKIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEEL-KDKDVDMFLVDIMLPGIDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R +       V +L  + +    + G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FEFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFR 122

Query: 120 MQKSKDE 126
             +   +
Sbjct: 123 RMQLSTQ 129


>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
 gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
          Length = 224

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD    +  + +  F   G+ V+ A S  +A +   K   P+ +++D +M     
Sbjct: 3   NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN--PDIILLDINMPEIDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         + +L   ++    I G RAGA+ +++KPF+ + L   +    +
Sbjct: 61  IEVCNRIR---DYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117

Query: 120 MQKSKD 125
            ++ K 
Sbjct: 118 REQRKS 123


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+D    + ++        G  V  A          E     + +++D  M G+  
Sbjct: 3   TRVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEAS-AFDAVLLDVMMPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       + V  L  + D    + G   GA+ +L KPF+   L   +R + +
Sbjct: 62  LEVCKRIRAKSR---IPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLR 118

Query: 120 MQKSKDENQFLDA 132
             +       L++
Sbjct: 119 RSQPSAVADRLES 131


>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      GF V   T+     +  +KE  P+ +++D  + G+  
Sbjct: 3   KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKTIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +  + R      G+ V  +    EA       L P+ +++D  + G+   
Sbjct: 5   KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNA-LKPDIVLLDVMLPGLDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +++ +  +  + D    + G   GA+ +++KPF+ + +   ++ + + 
Sbjct: 64  QVCREIRKK---SNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRR 120

Query: 121 Q-KSKDENQFLD 131
             +S  E +  +
Sbjct: 121 TGQSPAEMEVRE 132


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++        G+ V +A +  +A E    + + + +++D  + G+   
Sbjct: 4   KILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEV-DLILLDVMLPGMSGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R     +   V  L  +   E  ++G   GAN ++ KPF  E L   +R   ++Q
Sbjct: 63  ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQ 121


>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 257

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    VR+V        G+ V  A    +A E    E  P+ +V+D  M  +  F
Sbjct: 14  TLLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASE-QPDLVVLDVMMPKLDGF 72

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  +   
Sbjct: 73  AVCRRLRAESA---VPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGR 129


>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 242

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +F A    +  E  +  + P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQT-VFPDLIISDVMMPRANGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+   I+R+V      + G+ V EA    +A E  +   + + +++D  +  + 
Sbjct: 1   MNKILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSV-DLVILDIVLPKID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L    D +  + G   GA+ +L+KP++   L   ++   
Sbjct: 60  GWSVCRRIRKN---SNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFL 116

Query: 119 QM 120
           + 
Sbjct: 117 EK 118


>gi|315646640|ref|ZP_07899757.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277966|gb|EFU41287.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 46/125 (36%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V E     EA    +     +  ++D  + G+ 
Sbjct: 1   MSKVLILEDEESIRSFIVINLKRNGFDVLETGDGNEALRMLQTTPDIDIALLDVMVPGID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R       + + +L  +V  +  +     GA+  + KPF+   L   ++ L + 
Sbjct: 61  GFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRR 120

Query: 121 QKSKD 125
              + 
Sbjct: 121 VNVQR 125


>gi|316933148|ref|YP_004108130.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315600862|gb|ADU43397.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 240

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+     R +           V  A    E  E    +   + +V+D  + G    
Sbjct: 7   SILVVEDDRETRALIAKYLRSNNCNVATAADGRE-MERWIADHRVDLVVLDVMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + + +  L    D    I G   GA+ +L KPFN   L   +R + + 
Sbjct: 66  SLCRKIRAN---SQLPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122

Query: 121 QKS 123
           Q S
Sbjct: 123 QAS 125


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+   ++    +    + G++V  A    E   F  +    + +++D  +  +   
Sbjct: 2   KILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGF-FLGRCYGYDVIILDVMLPKLDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++    G    +  L  +   E  + G  +GA+ +L KPF+ + L   +R L + + 
Sbjct: 61  ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120

Query: 123 SKD 125
              
Sbjct: 121 ESK 123


>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
 gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
          Length = 234

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +   ND G+ +       E  E        + +++D  +  + 
Sbjct: 3   MKKVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNP-FDLIILDIMLPEMD 61

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +       +  +  + +    + G  +GA+ ++ KPF        ++ + 
Sbjct: 62  GIAICQKLRALDNF--TPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIM 119

Query: 119 QMQ 121
           + Q
Sbjct: 120 RRQ 122


>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 222

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD     R          G+MV  AT+  EA E  EK   P+ +V D +M  +  F
Sbjct: 4   TLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKH-QPHLIVTDIAMPEMDGF 62

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P+   + V +L      E+ I G + G +++L KPF  E L   +R L + 
Sbjct: 63  ELVKRVRSQPIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLER 122

Query: 121 QKSKD 125
            +  +
Sbjct: 123 SQLIE 127


>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M ++  L+ D    +  +        G+ V +A    EA    + +     +V+D  M  
Sbjct: 1   MKNISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQP-IELVVLDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAK---HHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGV-- 59
            +L VD   + + V ++L    G+ + +A    EA +   E+E LP+ +++D  M G+  
Sbjct: 705 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 764

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+M   + + V  +  +   E ++ G  AG+N +++KPF R+ +   +    +
Sbjct: 765 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 824

Query: 120 MQ 121
            +
Sbjct: 825 FR 826


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ R   +D G+ V             E+      ++ D  + GV  
Sbjct: 5   KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVL-DLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +   V +            I G   GA+ +L KPF+   L   +R L +  
Sbjct: 64  LEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRS 123

Query: 122 KSKDENQFLDA 132
           ++   N  L+A
Sbjct: 124 EALARNAKLEA 134


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++        GF V  A +  E       +   +  V+D  +  +  F
Sbjct: 7   RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQE-FDLAVLDVMLPDMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G ++ + +L      +  + G   G + ++ KPF+ E +   +R + +  K
Sbjct: 66  AVTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTK 125

Query: 123 SKDEN 127
           + D +
Sbjct: 126 ADDSD 130


>gi|298480391|ref|ZP_06998589.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298273672|gb|EFI15235.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1511

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F+   + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1295

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355

Query: 122  KSKD 125
            K + 
Sbjct: 1356 KLQS 1359


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016]
 gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  V R      G+ V  A +  EA +  EK + P  +V+D  +  +  
Sbjct: 5   KKILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEK-ISPALIVLDLMLPDISG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  +VD + ++ G   GA+ ++ KPF+ + L   +    +
Sbjct: 64  EDICKMLRKKSR---VPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLR 120

Query: 120 MQKSKD 125
             + + 
Sbjct: 121 RTEEEA 126


>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
 gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R++ R      GF V EA    +  E   +  LP  +++D  +  +  
Sbjct: 4   QHILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRH-LPCLIILDVMLPALDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +      + + V  L    +    + G   GA+ +++KPF+   L   ++ + +
Sbjct: 63  FEVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILR 122

Query: 120 MQKSKDENQFLD 131
                 E+  L+
Sbjct: 123 RGGRVAESALLE 134


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|317473767|ref|ZP_07933048.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316910024|gb|EFV31697.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1359

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R+  R       + V   ++   A  +  KE  P+ ++ D  M  +   
Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSAL-YIIKEYFPDLIISDIMMPEMRGD 1153

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    V+     + + +  L      + +I G + GA+ +++KPFN   LR  +  L   
Sbjct: 1154 ELCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLAN 1213

Query: 121  QKSKD 125
            +    
Sbjct: 1214 RALLR 1218


>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +RK+ +      GF V EA+   EA E   +  + + +++D  +    
Sbjct: 1   MK-ILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     D  V  L    + +  I G   GA+ +++KP + + +   ++ + 
Sbjct: 59  GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115

Query: 119 QMQKSKDENQFL 130
           +  K  + N  L
Sbjct: 116 KRTKKPNSNDIL 127


>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 236

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +          A +       PN +++D  + G+  
Sbjct: 5   QRILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPV-FKPNLILLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREIR---TTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RYQA 124


>gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1522

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL D +  +R     L    G+ V        A       + P+ ++ D  M  +  F
Sbjct: 742 TVLLADDNADMRGYVERLLAGAGYRVVAVEDGRSAVTAVRA-IRPDLVLSDVMMPHLDGF 800

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R+ P   ++ +  L      E  I G +AGA+ ++ KPF+   L   +    ++
Sbjct: 801 GVIDALRRNPDTRELPIILLSARAGEESAIDGFQAGADDYVAKPFSARELIARVEGTLRL 860

Query: 121 QKSKDE 126
            K + E
Sbjct: 861 AKLRRE 866



 Score = 87.6 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            ++L+V+    VR     +  D  + V +A     A    E  +  + L  D  M G L  
Sbjct: 1266 TVLVVEDDEEVRHTVVAMLTDLDYRVLQARDAQSALAILESGVPIDLLFTDVVMPGPLRS 1325

Query: 61   -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118
             +     +      ++ V +         +  G    G    L KP++RE L   +R++ 
Sbjct: 1326 PDLAR--KAQERFPNLAVLFTSGYTQNAIVHGGRLDPGV-ELLSKPYSREILARKIRQVL 1382

Query: 119  QMQKSKD 125
              +K + 
Sbjct: 1383 SGRKPER 1389



 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 44/116 (37%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLV+   ++R     +  + G  V EA SV EA      E   + L  D ++      
Sbjct: 1405 TILLVEDDALIRMAVADMVAELGHRVLEAGSVREALHIAGSEHAIDLLFTDLTLPDGRGE 1464

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +     + V +    +  +++ A +  G    L KP++   L  A+    
Sbjct: 1465 DLAAELVRRMPGLPVVFASGRMGPDELDAASFGGKTVHLRKPYDLAGLERAILAAL 1520


>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 231

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      GF V   T+     +  +KE  P+ +++D  + G+  
Sbjct: 3   KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++ +      GF V  A     A +       P+ +V+D  M G+   
Sbjct: 11  RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRT-FHPDVMVLDIMMPGMDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121
               R    G D    +L      E  +AG   G + ++ KPF+ E +   +  L +   
Sbjct: 70  GLLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSG 129

Query: 122 -KSKDENQFLD 131
              K+E   L 
Sbjct: 130 FGQKEEITRLK 140


>gi|153871894|ref|ZP_02000947.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152071639|gb|EDN69052.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 407

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++ +     V      + G  V  A +     +  +    P+ +++D  M G+  F
Sbjct: 19  TILIIEDNPNNLGVIVDYLEEAGLKVVVARNGEMGLKRAQFA-QPDIILLDVMMPGIDGF 77

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V ++    D E  + G   G   ++ KP   E +   +    ++
Sbjct: 78  ETCRRLKADAKTQEIPVIFMTALDDPEDKLKGFGVGGVDYITKPIQHEEVLARVTTHLRI 137

Query: 121 QKS-KDENQFLDAI 133
           +      N  ++ +
Sbjct: 138 RALTLKLNAKIEEL 151


>gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 242

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++ +VD    +R++     ++ G+ V       +     E +  P+ +V+D  M G   
Sbjct: 5   QTIWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQ-RPDLVVLDLMMPGDDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G D+ V  L    +    I G   GA+ +L KPF    L   +  + + +
Sbjct: 64  LTILRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVLRRR 123

Query: 122 KS 123
            +
Sbjct: 124 GA 125


>gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 450

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R++         F V  A       +    E  P+ +++D  M G+  F
Sbjct: 4   RILVVDDIETNRRLLEARLTAEYFDVLMAQDGPTCLDLARCEK-PDVILLDIMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         I G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  ETCRRLKADPETRHIPVVMVTALDQRSDRIRGLEAGADEFLTKPVDDVALFARVRSLLRL 122

Query: 121 QKSKDENQFLDA 132
               DE +  ++
Sbjct: 123 TSVMDELRQRES 134



 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 13  VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMP 70
           + +      +  G+          A          + +++D S          A +R   
Sbjct: 164 IARALPATLDAHGY-----GDPKIAISQARHA---DLVIVDLSSPRFDGLRLCARIRSDV 215

Query: 71  LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ-F 129
               V +  ++ E+D   M+     G N  + +P +   L        + ++  D  +  
Sbjct: 216 DTRQVPLLGVVDEMDKRTMVRALDLGVNDVISRPLDPGELSARSATQLKRKRYADALRDR 275

Query: 130 LDA 132
           LD 
Sbjct: 276 LDE 278


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +  + +      G+ V  A    EA +  E+E  P+ +++D  +     
Sbjct: 4   KTILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEE-QPDLMLLDIMLPKRDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+        +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 63  MEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 119

Query: 120 MQKSKDENQFLDA 132
                 + +   A
Sbjct: 120 RLNVPAQIEEAQA 132


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGNDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 119 RHYSQPAQE 127


>gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
 gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein
           [Cyanothece sp. CCY0110]
          Length = 219

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLLVD    +  + +      G+ V  A +  EA E   KE +P+ ++ D  M  +  
Sbjct: 13  KHLLLVDDDPNLVLLVKDYLEFQGYDVTTAENGKEALEILTKE-IPDMIICDVMMPEMDG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  VRQ    + V V +L  +   +  + G   GA+ +++KPF  E L   +    +
Sbjct: 72  YSLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLK 131

Query: 120 M 120
            
Sbjct: 132 Q 132


>gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 222

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    + +V        GF    AT    A E       P+ +++D  + G   LE
Sbjct: 6   ILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRA-TRPDLILLDLMVPGPDGLE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    +DV +  +    +    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 65  ITRTLRK---TSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRRA 121

Query: 122 KSK 124
           K +
Sbjct: 122 KGR 124


>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
 gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGISGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E   K    + +++D  +  +  
Sbjct: 3   RKILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMV-KSCAYDIILLDLMLPKMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +DV +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQQIRE---FSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILR 118

Query: 120 MQK 122
             +
Sbjct: 119 RNE 121


>gi|224370278|ref|YP_002604442.1| two-component response regulator [Desulfobacterium autotrophicum
           HRM2]
 gi|223692995|gb|ACN16278.1| two-component response regulator [Desulfobacterium autotrophicum
           HRM2]
          Length = 244

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +  +   N  G+ V  A       E   ++  P+ +++D  +  +  
Sbjct: 7   KRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELW-RQWHPDLIILDIMLPMIDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +       + V  L  + + E  + G R G + +L KPF+ +     +  L   +
Sbjct: 66  LTVLKKIRSEDEKLPVLILSAKGNAEDRVRGLRCGVDDYLAKPFDLDEFLLRVDRLLARK 125


>gi|209527246|ref|ZP_03275757.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209492313|gb|EDZ92657.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 443

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ +     +      + G  +  AT+  EA    E  + P+ +++D  M  +  F
Sbjct: 8   TILIVEDNRSNLSLIADTIANVGCKIAIATNGIEAIAQAEA-IQPDLILLDIVMPKMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P   ++ V  +    D    + G   GA  ++ KPF  E +   +    ++
Sbjct: 67  ETCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKI 126

Query: 121 QKSKDEN 127
           +    + 
Sbjct: 127 RYLTQQL 133


>gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R+     G+ V  A    +A         P+ +V+D  + G   L+
Sbjct: 16  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAV-RRPDLMVLDWMLPGLSGLD 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L         I G   GA+ ++ KP + E L+  +R L +  
Sbjct: 75  VCRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA 134

Query: 122 KSKDEN 127
              ++ 
Sbjct: 135 PPAEQM 140


>gi|186685422|ref|YP_001868618.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186467874|gb|ACC83675.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 462

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD +    ++   +    GF V +A +   A   C+  +LP+ +++D +M G+  
Sbjct: 11  KNILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQM-VLPDVILLDINMPGMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      +V V ++    D    +     G   ++ KPF+   +   +     
Sbjct: 70  YQVCQQLKADDKTCEVPVIFISALDDVVDKVKAFDVGGVDYIAKPFHGAEVVLRIENQIN 129

Query: 120 MQ----KSKDENQFLDA 132
           ++    + +++N  L  
Sbjct: 130 LRLLQVRLQEKNFLLQE 146


>gi|330890495|gb|EGH23156.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           +LVD    +R++     +  GF V       +       E   + L++D  +     F  
Sbjct: 1   MLVDDDQEIRELLDTYLSRAGFQVRTVGDGAD-FRRAFNEEPSDLLILDVMLPDEDGFSL 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +RQ P    V V  L    D    + G   GA+ +L KPF+   L+  ++ L +  +
Sbjct: 60  CKWIRQHPRQPHVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRRAQ 119


>gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 249

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+         GF V  A +  E      +    + +V+D  + G   F
Sbjct: 31  RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGA-DLVVLDVMLPGPDGF 89

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A +R +     V V  L      +  I G  +GA+ +L KPF    L   +R + +  +
Sbjct: 90  -AFLRDLRARDAVPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRAR 148


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    GF    A +   A E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRQRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 236

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  + G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++     ++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKMIDA 136


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R + R      G+ V  A    EA     +E  P+++V+D  +      
Sbjct: 2   KILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASRED-PDFIVLDIGLPELDGF 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ      V + +L    D    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 61  EVCRRIRQRSE---VPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKR 117

Query: 121 QKSKD 125
            +   
Sbjct: 118 SQKAQ 122


>gi|291570098|dbj|BAI92370.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 443

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ +     +      + G  +  AT+  EA    E  + P+ +++D  M  +  F
Sbjct: 8   TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEA-IQPDLILLDIVMPKMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P   ++ V  +    D    + G   GA  ++ KPF  E +   +    ++
Sbjct: 67  ETCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKI 126

Query: 121 QKSKDEN 127
           +    + 
Sbjct: 127 RYLTQQL 133


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    + ++         F V    +  +A E  +KE LP+ +++D  + G
Sbjct: 1   MKTGKVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKE-LPDIILLDIMIPG 58

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R       + +  L ++ +    + G + GA+ ++ KPF    L   +  
Sbjct: 59  IDGFEVCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDA 118

Query: 117 LPQM 120
           + + 
Sbjct: 119 VLRR 122


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++V+    + ++ ++     G+ V  A    EA E    E   +  ++D  +     +
Sbjct: 4   KIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEA-ELLLAEQSYDLAILDWMIPKISGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R      ++ +  L    +    + G   GA+ ++ KPF+ + L   ++ L + 
Sbjct: 63  ELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRR 122

Query: 121 QKSKDENQFL 130
              +  +  L
Sbjct: 123 AAPERMSDIL 132


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +          + V       +  +        + +++D  +    
Sbjct: 1   MTQILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
 gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +      G+ V EA    EA E    E     +++D  M  +   
Sbjct: 5   KILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPRMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VRQ      V +  L    +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREVRQSSK---VPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRR 121


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    +  V      +  + V  A    +  EF E     + +++D  +     +
Sbjct: 2   RILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEA-FSYDLILLDVMLPKLNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ   G  + V  L  +   E  + G   GA+ +++KPF+   L   +R L + 
Sbjct: 61  GLCQRIRQ--SGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRR 118


>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +  + +      G+ V  A    EA +  E+E  P+ +++D  +     
Sbjct: 3   KTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEE-QPDLMLLDIMLPKRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+        +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREIRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|189464923|ref|ZP_03013708.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM
            17393]
 gi|189437197|gb|EDV06182.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM
            17393]
          Length = 1341

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +        +   + V  AT+  EA E  ++    N +V D  M  +  F
Sbjct: 1096 TVLVVEDNPEMLAFIERQLSSQ-YAVVTATNGREALEALDRN-FVNLVVSDVVMPLMDGF 1153

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  + + +  I G   GA+S++ KPF+ E L   +  L   
Sbjct: 1154 ELCKTIKSNVGYSHIPVILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLINN 1213

Query: 121  QKSKDEN 127
            ++    +
Sbjct: 1214 REKLRRD 1220


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+    A    +A         P+ +++D  M  +   
Sbjct: 12  RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKA-TSFHPDVVILDVQMPRMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ V +L         + G RAGA+ ++ KPF+ + +   +  L +   
Sbjct: 71  ETLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAG 130

Query: 123 SKDE 126
              +
Sbjct: 131 RTQQ 134


>gi|119513098|ref|ZP_01632151.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119462232|gb|EAW43216.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 378

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L VD +     + + +    G+ +        A +  EK   P+ +++D  M G    
Sbjct: 11  RILAVDDTRDNLILVQTILESEGYEIDLVADGLTALQQIEKSP-PDLILLDVMMPGIDGY 69

Query: 61  EFIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           E    +R+ P    + + +  +        ++ G  AGA+ F+ KPF+ + L   +R L 
Sbjct: 70  EVTRRIRKNPQFNASYIPILLITAF-HQSSVVEGLDAGADDFIRKPFDTDELLARVRSLL 128

Query: 119 QMQKSKDENQFLD 131
           +++ S DE + + 
Sbjct: 129 RLKHSLDEQKKMA 141


>gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 59/129 (45%), Gaps = 3/129 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++      + G +V  A S  EA +    E     +++D  M+G+
Sbjct: 1   MKPKILIVDDEPDICEILTFNLVNEGLIVDYAYSAEEALQKLSPEHS--LILLDIMMDGM 58

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +    +    G ++ + +L  +     M+ G   GA+ ++ KPF+ + +   ++ + +
Sbjct: 59  SGYKMAEKLRSEGNEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILK 118

Query: 120 MQKSKDENQ 128
             K K +N+
Sbjct: 119 RAKLKKQNE 127


>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  + +      G+ V  +    +A     K    + +++D  +  +  F 
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRI-KSGNFDMVLLDVMLPKIDGFS 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               VR+    +DV +  +  + D    + G   GA+ ++ KPF    L   +R   +  
Sbjct: 65  VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121

Query: 121 -QKSKDENQFLDA 132
            Q S  + + L A
Sbjct: 122 AQSSAQDGKVLKA 134


>gi|289640898|ref|ZP_06473068.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289509213|gb|EFD30142.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 267

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R   +  G+ V  ATS   A         P+ +++D  +  + 
Sbjct: 1   MTRVLIVDDDTQILRALRITLHARGYEVMTATSGRHAL-AATTSGRPDIILLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T   V  L         +    AGA+ ++ KPF  + L   +R + + 
Sbjct: 60  G-AEVIHALRSWTTTPVIVLSGRGGSTDKVGALDAGADDYVTKPFRVDELLARLRAVARR 118

Query: 121 QKSKDE 126
             S  E
Sbjct: 119 TLSATE 124


>gi|262195489|ref|YP_003266698.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262078836|gb|ACY14805.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 406

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD      ++      D    V  A S  +  E   +E  P+ +++D  + G+  
Sbjct: 21  QRVLVVDDDPANLRLVEAYLADLDVEVSTALSGEQGVEQAREEP-PHLVLLDIMLPGIDG 79

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R  P   DV V ++    D  + + G   G   ++ KP +R  L   +R   +
Sbjct: 80  LEACRRIRAAPRTRDVPVIFMTALSDHARKLEGFGVGGVDYVTKPLDRPELLARVRTHLR 139

Query: 120 MQKSKDENQF 129
           +QK     Q 
Sbjct: 140 IQKMHASLQR 149


>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
 gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
          Length = 238

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       ++V  A    EA    E+    N +++D  M     +
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKY-NLIILDLMMPKVDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 64  EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRR 120


>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 245

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +  +     G+ V   +    A          +++++D  + G+  
Sbjct: 8   KKILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKY-DFILLDLMLPGMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R      +  +  L         I G   GA+ +L KPF+   +   ++ + + 
Sbjct: 67  IEITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRR 125


>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  +        GF V       +A     ++  PN +++D  +  + 
Sbjct: 1   MKHIMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSF-QQRKPNLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
 gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
          Length = 230

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA E        +  ++D  + G+ 
Sbjct: 1   MQTILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       + V  L   V  +++I G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 61  GFEVCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRR 120

Query: 121 QKS 123
              
Sbjct: 121 INL 123


>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 227

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD     R          G+ V  A    EA    +    P+ +V D  M  +   
Sbjct: 4   TILVVDDDLGTRLSISDYLELSGYSVVTANDGQEALAMVD-NYHPDLIVTDIIMPRMNGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  VRQ P    + V  L      ++ I G ++G + +L KPF  E L  A+R L + 
Sbjct: 63  ELVRRVRQQPAFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLER 122

Query: 121 QKSKDENQFLD 131
            +       L 
Sbjct: 123 SQIIQSEYRLS 133


>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 225

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + E+  + +++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 252

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +    +   +   ++++EA +  EA E   +E   + +++D  M  + 
Sbjct: 17  MAKILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEH-IDLVLLDVMMPVMD 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T + +  L  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 76  GL-EAMMHIRKTTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRR 134


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA +       P+ LV+D  M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMI-ASDRPDALVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   MR L +  K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 123 SKDENQ 128
             D  +
Sbjct: 121 PDDTAE 126


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A +  EA     +    N +++D  M     +
Sbjct: 5   RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKY-NLIILDLMMPKVDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T++ +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 64  EVCRRLRNK---TNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA     +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKAE 122


>gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 236

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +        G++  +A +  EA     ++ + + +++D  M  +  
Sbjct: 5   KTVLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNV-DLVILDVMMPKLNG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  IDTCLKIREE-REMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121


>gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1]
 gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1]
          Length = 254

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum
           SS9]
 gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum
           SS9]
          Length = 235

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R          GF V  A +     +  E    P+ +++D  M G   
Sbjct: 4   KQILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNT-PDLIILDIMMPGDDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     +D  +  L    +    +AG   GA+ ++ K F+   L   ++ + +
Sbjct: 63  FTLCQKLR---RTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILR 119

Query: 120 MQKSKDENQF 129
              S    Q 
Sbjct: 120 RSHSSHSTQL 129


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     ++  P+ +V+D  +  +   
Sbjct: 57  RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAV-RAARDFRPDAVVLDVMLPDMDGL 115

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 116 AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 175

Query: 123 S 123
           S
Sbjct: 176 S 176


>gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
 gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Sorangium cellulosum
           'So ce 56']
          Length = 1143

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 4/119 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D +  +R+    +  +  + V       EA     +   P  ++ D  M  +  F
Sbjct: 648 RVLLADDNADMREYVGRVLRER-WTVEAVADGAEALASARRSP-PALVLTDVMMPNLDGF 705

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +  +R       V V  L      E  + G  AGA+ +L KPF+   L   +    Q
Sbjct: 706 GLLRALRADERTRAVPVVMLSARAGEESRVEGLEAGADDYLPKPFSARELVARVATHLQ 764


>gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 236

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  + G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++     ++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKVIDA 136


>gi|160885580|ref|ZP_02066583.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483]
 gi|156109202|gb|EDO10947.1| hypothetical protein BACOVA_03582 [Bacteroides ovatus ATCC 8483]
          Length = 1459

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+V+ ++ +R    ++ ++  + V EAT+  E  ++  ++ +P+ ++ D  M  +  
Sbjct: 1196 TSILIVEDNNELRHFLWNILSET-YTVLEATNGKEGLKYA-QQYIPDLIISDVMMPVMDG 1253

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  ++       + +  L  +   +  IAG   G + ++ KPF+   L+  +  L +
Sbjct: 1254 LDMVKAIKADHDTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLR 1313

Query: 120  MQKSKDEN 127
             +K   + 
Sbjct: 1314 QRKQLQDL 1321


>gi|154492762|ref|ZP_02032388.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184]
 gi|154087067|gb|EDN86112.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184]
          Length = 1346

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLL + +  VR+        + F V EA +  +A      E LP+ +V D  M     L
Sbjct: 1092 TLLLAEDNPDVRRYICKHLEPY-FDVLEAENGVDAFNKI-AETLPDLVVSDIMMPKKDGL 1149

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +  + ++Q      + V  +  +     +  G + GA+ +++KPFN E L   +R +   
Sbjct: 1150 QLCSEIKQDLRTGHIPVIIITAKSMVMHIKEGFQCGADDYIVKPFNMEVLLCRIRNILAS 1209

Query: 121  QKSKDEN 127
            ++   E 
Sbjct: 1210 RERLKEL 1216


>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+   ++ +   + F   GF V  A+      E   +   P+ +++D  + G+ 
Sbjct: 1   MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTH-PDLIILDVMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R +   T V +  L    D    IAG   GA  +++KPF+   L   +R + + 
Sbjct: 60  GFSVC-RAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRW 118

Query: 121 QKSKDE 126
            + + +
Sbjct: 119 NERQRQ 124


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKDFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|325298638|ref|YP_004258555.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324318191|gb|ADY36082.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +       F D  + V  A +  E  E    E +P+ +V D  M  +    
Sbjct: 1092 ILIVEDNKDILDYIAESFTDL-YEVKTALNGKEGMEIAL-ECIPDIIVSDIMMPVMDGIT 1149

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L  +        G ++GA+S+L KPF+   L   +  L   +
Sbjct: 1150 LCKQLKNDIRTSHIPIILLTAKDTLSDKEEGYQSGADSYLTKPFSASLLHSRINNLLAQR 1209

Query: 122  K 122
            +
Sbjct: 1210 R 1210


>gi|325273777|ref|ZP_08139968.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101090|gb|EGB98745.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 210

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++ +   +  GF V                   + +++D  +     
Sbjct: 6   KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGA-GFRRALDSSPCDLVILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VRQ P    V +  L    D    + G   GA+ +L KPF+   L+  ++ L +
Sbjct: 65  FSLCRWVRQHPRRARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARLKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAE 127


>gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
 gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides
            finegoldii DSM 17565]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F + EA +  EA E  +   + + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNILEAGNGEEALEKLKGNEV-DIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIPTCHIPVIMLSAKSETKDQMEGLQMGADDYIPKPFSLSILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|220909913|ref|YP_002485224.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219866524|gb|ACL46863.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 406

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D +   R +   +  + G+ +  A    EA    E    P  +++D  M  +   
Sbjct: 14  KILVADDAPDNRFLIEAILEEQGYALDFAEDGREALTKIEAAP-PQLVLLDVMMPEMDGY 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VRQ P  + + +  +        + AG   GA+ F+ KP   E L   +R L ++
Sbjct: 73  EVTRRVRQNPNLSYIPILLITAYEQV-TVAAGLDTGADDFIRKPLEPEELSARVRSLLRL 131

Query: 121 QKSKDENQFLD 131
           + S DE   + 
Sbjct: 132 KHSIDERDRIA 142


>gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM
           6242]
          Length = 170

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD         +      G+ V EA +   A +   K  +P+ +++D  M  +  F
Sbjct: 49  KVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDAL-KSDIPDVILLDVMMPDMDGF 107

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ PL  ++ V  L  + +    + G   GA+ ++ KPFN + L+  ++ + + 
Sbjct: 108 EVCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELKARIKTVLRR 167

Query: 121 QK 122
            +
Sbjct: 168 TQ 169


>gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 224

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+    +         +FG  V  A       E   +E   + L++D  M  + 
Sbjct: 1   MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQE-AFDLLILDIIMPKMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQ        V  L      E ++ G  +GA+ +L+KPF+ + L   ++ + 
Sbjct: 60  GLELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAIL 118

Query: 119 QMQKSKDENQF 129
           +  +     Q 
Sbjct: 119 RRGREDSVQQL 129


>gi|259417672|ref|ZP_05741591.1| response regulator receiver modulated serine phosphatase
           [Silicibacter sp. TrichCH4B]
 gi|259346578|gb|EEW58392.1| response regulator receiver modulated serine phosphatase
           [Silicibacter sp. TrichCH4B]
          Length = 423

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S + R++       +GF V EA    EA + C  +  P+ ++ D  M G+  
Sbjct: 19  RRVLVVDDSRLQRRILVASLKKWGFDVVEAEGGEEAMDICRADP-PDLILSDWMMPGMNG 77

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
             F    R        +   L  + +  ++  G  AGA+ FL KP + + LR  +     
Sbjct: 78  IDFCRAFRAESHEAYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGER 137

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   +
Sbjct: 138 ILRMQRELFEKNRI 151


>gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 254

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D+ +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|251794919|ref|YP_003009650.1| signal transduction histidine kinase, LytS [Paenibacillus sp.
           JDR-2]
 gi|247542545|gb|ACS99563.1| signal transduction histidine kinase, LytS [Paenibacillus sp.
           JDR-2]
          Length = 1112

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEG--V 59
            +LLVD      KV + LF    + VF A +  +A +  ++     + +++D  M G   
Sbjct: 772 KILLVDDDSSNIKVLQELFPSSRYHVFVAYNGEDALKLIKQHRGELSLVLLDVMMPGLSG 831

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+      + V  L +      +  G  AGAN FL+KPF+ + L   ++ L Q
Sbjct: 832 YEVCRRIREENPLYQLPVLLLTVRNSPADIALGFEAGANDFLVKPFSGKELLARVQTLLQ 891

Query: 120 MQKSKDENQFLDAI 133
           M+++ ++   ++ +
Sbjct: 892 MKEAVEQAIRMETL 905


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA      E     +++D  M G+ 
Sbjct: 1   MK-ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   + + +  L  + +    I G  +GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  G-IEVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 TE 120


>gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T17]
          Length = 289

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 2   RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 61  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 118


>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 219

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLLVD    +  + +      G+ V  A +  EA E   K+ +P+ ++ D  M  +  
Sbjct: 13  KHLLLVDDDPNLVLLVKDYLEFQGYEVTTAENGKEALEVLTKQ-IPDMIICDVMMPEMDG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  VRQ    + V V +L  +   +  + G   GA+ +++KPF  E L   +    +
Sbjct: 72  YSLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLK 131

Query: 120 M 120
            
Sbjct: 132 Q 132


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+++    + +V +      G+    A +  +      +E   + +++D  +  +  
Sbjct: 3   NRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQY-REEQWDLILLDIMLPEMSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                R     +   V  L  + + E  + G   GAN ++ KPF  E L   +R   +
Sbjct: 62  IDVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119


>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 225

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK+ +      G+ V EA    E  E   +    + +++D  M  + 
Sbjct: 5   MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTY-DIVILDIMMPKID 63

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D    + G     + +++KPFN + L   ++ L 
Sbjct: 64  GWSVCRKIREE---SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALL 120

Query: 119 QM 120
           + 
Sbjct: 121 RR 122


>gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E  +   + + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEV-DIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|284054063|ref|ZP_06384273.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD + I R +        G+ V  A++  EA +      L + +++D  M  +    
Sbjct: 8   VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPL-DLVLLDIMMPQMNGYQ 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++       + V  +    D + ++     GA  +L KPFN   LR  +    + +
Sbjct: 67  VLESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKK 126

Query: 122 KSKDENQ 128
           + +D+ Q
Sbjct: 127 RLRDQEQ 133


>gi|268325500|emb|CBH39088.1| conserved hypothetical protein containing response regulator
           receiver domain [uncultured archaeon]
          Length = 170

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD         +       F V EA    EA E    E +P+ +++D  +     
Sbjct: 48  TKILIVDDELDTLLPLKRALEMEDFNVVEAQDGIEALEKVRSE-IPDLVLLDLMLPKING 106

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++     + + +  L  + +    + G   GA+ ++ KPFN + L+  ++ + +
Sbjct: 107 FEVCQRLKHDEATSYIPIIMLTAKGETSDKVEGIEIGADDYVTKPFNLDELKARIKAVLR 166

Query: 120 M 120
            
Sbjct: 167 R 167


>gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E  +   + + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEV-DIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1353

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R        +  F   EA +  EA E  +   + + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEV-DIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+      S  EA    E +    ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQN-FTFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+ V  A +  +A +   +E+ P+ +V+D  +      
Sbjct: 22  RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAA-QEIEPDVVVLDIMLPDFDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V +L  +   E  ++G  AG + ++ KPF+ E +   +R L +   
Sbjct: 81  EVMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 140

Query: 123 SKDEN 127
           +  E 
Sbjct: 141 AHAEQ 145


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A+    A         P+ +V+D  M G+   
Sbjct: 8   RVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREA-AGFEPHVIVLDVMMPGMDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G DV V  L  + + +  + G   GA+ ++ KPF+ E L   ++   + Q
Sbjct: 67  AVCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQ 125


>gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 203

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + +V+    + ++  +     G  V    S  +A    E E  P+ +++D  +  + 
Sbjct: 1   MPFIYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEK-PDLILLDIMLPDID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  V+  P+  ++ +  L  +      I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GLEVCKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVL 119

Query: 119 QMQKSKD 125
           +  ++K 
Sbjct: 120 RRCQNKS 126


>gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2]
 gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris HaA2]
          Length = 457

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A +  +A E C++    + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVKLLEARLSAEYFDVVTAANGAQALEICDRAEC-DIVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    L       +    +  EA     +      +V +       L 
Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEPNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +  + D    +  G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++        G+ V +A +  +A E    + + + +++D  + G+   
Sbjct: 4   KILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEV-DLILLDVMLPGMSGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R     +   V  L  +   E  ++G   GAN ++ KPF  E L   +R   ++Q
Sbjct: 63  ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQ 121


>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
 gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       +A     ++  PN +++D  +  + 
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASF-QQRKPNLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      G+ V  A +  EA E   KE  P+ +++D  +  +  
Sbjct: 6   KKILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESY-KEFNPHLIILDLMLPDISG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  +V  +++I G   GA+ ++LKPF+   L   +  + +
Sbjct: 65  EEICKRIRKNSS---VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L++D   ++ K  R      G+ V  A    E  E   K    + +++D  +  + 
Sbjct: 1   MENILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKI-KSGNFDLVILDLMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++   +++ +  L  + +    I G   GA+ +L KPFN   L   +R L + 
Sbjct: 60  GLTLC-KEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRR 118


>gi|237724054|ref|ZP_04554535.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|265755338|ref|ZP_06090108.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229437514|gb|EEO47591.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
 gi|263234480|gb|EEZ20070.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1351

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +LLV+ +   R   +   N + + V EA    E  E    E  PN ++ D  M  +  +E
Sbjct: 1102 ILLVEDNTEFRNFLKEELNKW-YQVIEAKEGLEG-EKIAIERDPNLIISDVMMPIMNGIE 1159

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L   +  E  + G  AGA+S+L KPFN + L   +R+L + Q
Sbjct: 1160 LCKRLKNNIQTSHIPIILLTARISDEDKMTGYEAGADSYLSKPFNFDILLTRIRKLIEQQ 1219

Query: 122  KSKD 125
            +++ 
Sbjct: 1220 ENRK 1223


>gi|218130279|ref|ZP_03459083.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697]
 gi|217987563|gb|EEC53891.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697]
          Length = 1359

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R+  R       + V   ++   A  +  KE  P+ ++ D  M  +   
Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSAL-YIIKEYFPDLIISDIMMPEMRGD 1153

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    V+     + + +  L      + +I G + GA+ +++KPFN   LR  +  L   
Sbjct: 1154 ELCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLAN 1213

Query: 121  QKSKD 125
            +    
Sbjct: 1214 RALLR 1218


>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
 gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L++D    +R++   +  + GF VFEA +  +A +   +E   +  V+D  M  +  
Sbjct: 14  NKVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEK-IDLCVLDIMMPQMDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   VR+     D+ +  L  + +  + + G   GA+ +L KPF  + L   ++ L +
Sbjct: 73  YEFCKQVRR--YYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLR 130

Query: 120 MQK 122
             K
Sbjct: 131 RYK 133


>gi|254409963|ref|ZP_05023743.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182999|gb|EDX77983.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1525

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+VD   + R++  +  +   + + +A +  EA +       P+ +++D  M  +   
Sbjct: 978  KILIVDDDTVNRQILVNYLSLENYQLAQAANGREALDIINNGFQPDLILLDAIMPRMTGY 1037

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +R+    T++ V  L        ++AG   G N +L KP  +  L   ++   ++
Sbjct: 1038 DVCKKLREFYPPTELPVLMLTANEQVNDLVAGFSVGVNDYLTKPIAKYKLLVRIKTHLRL 1097

Query: 121  QKSKDENQFLDA 132
                 EN  L A
Sbjct: 1098 STIAKENAQLYA 1109


>gi|153805826|ref|ZP_01958494.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185]
 gi|149130503|gb|EDM21709.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185]
          Length = 1376

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 18/143 (12%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++LLVD +H +  + R  F    + +  A    EA + C +  LP+ ++ D  M  +  +
Sbjct: 1133 TILLVDDNHEILMILREYFVK-DYNIIMAIDGQEALDKCNRS-LPDIIISDVMMPRMNGI 1190

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
            E  A +++      + +  L  +   E  I G   GA++++ KPFN   L+  +R L   
Sbjct: 1191 ELCATLKKNLQTCFIPIILLTAKSQVEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLNK 1250

Query: 120  -------------MQKSKDENQF 129
                          Q+ +D+ Q 
Sbjct: 1251 SHQMRNLPTANNVRQEIQDKKQR 1273


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++++D    + ++        G+ V  A    +A +   KE   +  ++D  +  +  
Sbjct: 4   KTIMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQEL-KEKDVDMFIVDIMLPNMDG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R         V +L  + +    + G   GA+ +++KPF+   L   +R + +
Sbjct: 63  FEFVRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFR 122

Query: 120 MQKS 123
             + 
Sbjct: 123 RMQL 126


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+VD    +R + +      GF V E  +     +  +     + +V+D  + G  
Sbjct: 1   MPKLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSH-FDMVVLDIMLPGPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +R++   +++ +  L  + D    I G   GA+ +++KPF+   L   +  + 
Sbjct: 60  GLSLCKEIRKI---SNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAIL 116

Query: 119 QMQKSK 124
           +   ++
Sbjct: 117 RRVAAQ 122


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LL++    + ++ R       F V    S  E  +   +E   + +++D  + G  
Sbjct: 1   MKKILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHY-DLIILDIMLPGVN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R +    ++ + ++  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116

Query: 119 QMQKSKDENQ 128
           +  +     Q
Sbjct: 117 ERYERLAGKQ 126


>gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
 gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
          Length = 1337

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 1    MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
            M      ++L+V+ +  +R++   + + + + +  A    E  E    E +P+ ++ D  
Sbjct: 1081 MKGIEEATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDE-MPDIIISDVL 1138

Query: 56   MEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            M  +  +E    +++      + V  L      E+ + G + GA+ ++ KPFN E L   
Sbjct: 1139 MPNMSGIELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISR 1198

Query: 114  MRELPQMQKSKDE 126
               L   ++    
Sbjct: 1199 CNNLINSRRLLQR 1211


>gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator
            [Prevotella oris F0302]
 gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator
            [Prevotella oris F0302]
          Length = 1337

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 1    MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
            M      ++L+V+ +  +R++   + + + + +  A    E  E    E +P+ ++ D  
Sbjct: 1081 MKGIEEATILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDE-MPDIIISDVL 1138

Query: 56   MEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            M  +  +E    +++      + V  L      E+ + G + GA+ ++ KPFN E L   
Sbjct: 1139 MPNMSGIELCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISR 1198

Query: 114  MRELPQMQKSKDE 126
               L   ++    
Sbjct: 1199 CNNLINSRRLLQR 1211


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|332829768|gb|EGK02414.1| hypothetical protein HMPREF9455_01684 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1268

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            M  +L+V+ ++ ++   ++   +  + +  A     A     +  +P+ ++ D  M  + 
Sbjct: 1022 MQ-ILVVEDNNELQDFLKNSLQEL-YNISVANDGEVAWNLINR-KMPDLIISDIMMPNMD 1078

Query: 61   EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             F     ++     + + V  L    D  K + G   GA+ ++ KPF+   L   +  + 
Sbjct: 1079 GFGLCQLIKSTFQTSHIPVILLTALSDKTKQLEGLGLGADDYITKPFDITVLTKRIESIL 1138

Query: 119  QMQKSKDE 126
            + ++   E
Sbjct: 1139 KNREIVRE 1146


>gi|295086680|emb|CBK68203.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1540

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F    + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1254 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1311

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1312 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1371

Query: 122  KSKD 125
            K + 
Sbjct: 1372 KLQS 1375


>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R+  +   +  G+   EA S  EA +  EKE  P   ++D  + G+  
Sbjct: 4   KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEK-PALAILDIMLPGMSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    +         +  +  +      I G   GA+ +++KPFN + L   +R L +  
Sbjct: 63  YEVCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRV 122

Query: 122 KSKD 125
               
Sbjct: 123 NLSQ 126


>gi|189465368|ref|ZP_03014153.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM
            17393]
 gi|189437642|gb|EDV06627.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM
            17393]
          Length = 1295

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +L +D +  +R++ +H+ +   + +F A +  +  E  +   + + ++ D  M  +  LE
Sbjct: 1050 ILFIDDNKDLRELIQHILSKK-YQIFIAENALQGLELLKSTPV-DIIICDIMMPQMNGLE 1107

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F   ++       + +  L  +   +  I   +AGA S++ KPF  + L+  +  L Q +
Sbjct: 1108 FCRQIKGDIQTNHIPIIMLTAKNAVDDQIECYKAGAESYIAKPFEMKILQARIDNLLQSR 1167

Query: 122  KSKDE 126
            +   +
Sbjct: 1168 EQSRQ 1172


>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 242

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +F A    +  E   K + P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKA-KTIFPDLIISDVMMPRANGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1334

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R +   LF+   + V+EA    E  E   KE+ P+ ++ D  M  +  +
Sbjct: 1085 KILIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1142

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  + G + GA+ ++ KPFN + L      L   
Sbjct: 1143 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1202

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1203 RKLLQQ 1208


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+ V  A           +E  P+ +++D  + G+    
Sbjct: 5   ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAA-RESHPDLILLDWMLPGISGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G  V +  L  + +    + G  AGA+ +++KPF+ E L   +R   +  + 
Sbjct: 64  ICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQE 123

Query: 124 KDENQFL 130
           ++  + L
Sbjct: 124 ENPEEIL 130


>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++        G+   E     +A E C+ E   + +V+D  M  + 
Sbjct: 1   MPRILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVED-FDIIVMDIMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + VR++    D  V  L    +    I G   GA+ +++KPF+ + L   +  + + 
Sbjct: 60  GF-SAVREIRKTKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKR 118

Query: 121 QKSKDENQ 128
            ++K + +
Sbjct: 119 TQNKSDKE 126


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
 gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +           G+ V++A +  EA +    +     +++D  M  + 
Sbjct: 1   MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGKEAVDMVNAKD-IQLVLMDVMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  +     ++V V  L  + +    + G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GITAMAKIRE-NSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRR 118


>gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 1385

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R+    L    G+ V       EA E       P+ +V D  M     L
Sbjct: 628 RVLVADDNADMREYLTRLLRSDGYRVDAVADGLEALEAIRAG-APDIVVSDVMMPRLDGL 686

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R         V  L      ++ I+G RAGA+ +L+KPF    L   +R   ++
Sbjct: 687 GLVAELRADRRTAATPVLLLSARAGQQESISGLRAGADDYLVKPFAAAELLARVRTNVEL 746

Query: 121 QKSK 124
            + +
Sbjct: 747 ARLR 750


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  V        G+ V  A +  EA +        + +V+D  M  + 
Sbjct: 1   MK-ILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMD-FTAVAHYDLIVLDLMMPVMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + D + ++ G  AGA+ +L+KPF+ + L   +R L + 
Sbjct: 59  GLTFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR 118


>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 232

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+ D    + +       + GF VF+A    EA E   ++      ++D  M  + 
Sbjct: 1   MENILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEIL-RQARIQLAIVDIMMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  V+++   + + V +L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  G-IRLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRR 118


>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 250

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R++        G+ V  A     A E          EL  + LV+D  +
Sbjct: 20  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  + +  L  +      + G   GA+ +L KPF+   +    
Sbjct: 80  PQINGLDICRLLRHQ--GNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 137

Query: 115 RELPQMQK 122
           R L + Q+
Sbjct: 138 RALLRRQR 145


>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 238

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA +  +A     +    + +++D  + G   +
Sbjct: 6   KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDY-DVILLDLMLPGRDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G  AG + +++KPF+   +   ++ L + 
Sbjct: 65  EVCKEIREK---KATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121


>gi|224369670|ref|YP_002603834.1| two-component response receiver and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692387|gb|ACN15670.1| two-component response receiver and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 222

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 11/142 (7%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M +    +++VD +    +V   +    G+ +  AT    A    + +  P  +++D  M
Sbjct: 1   MKNTRPDIIIVDDNPHNLRVLSTILKKEGYEIRPATGGQTALAAIDAKP-PELILLDIMM 59

Query: 57  EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +   E    +++     ++ V ++    D +  I     G   ++ KPF  E +   +
Sbjct: 60  PAMNGYEVCECLKKNEGTRNIPVIFITALDDVKDKIKAFAMGCTDYISKPFQEEEILARV 119

Query: 115 RELPQMQKSKD----ENQFLDA 132
           +    M + +     +N+ L A
Sbjct: 120 KTQIHMGRLQQDLRVKNERLKA 141


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+  H + K+  H     G+ V   T   EA     +    + +++D  + G+ 
Sbjct: 1   MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDY-DLIILDLMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + V  L  + D  + I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GLEVCRKIRGNSSL-HIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQL 118

Query: 119 QMQKSKDENQ 128
           + +  +  ++
Sbjct: 119 RGRTKELTDE 128


>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
          Length = 229

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           LLVD    +R++ R      GF V EA     A    E+  + + +V+D  +  +  F  
Sbjct: 2   LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPV-DVMVLDLMLPEMDGFQV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +A VR+      + V  L    D E  I G   GA+ +L+KPF+   L   +R + + 
Sbjct: 61  LAEVRRRETW--LPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRR 116


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +  +      + V    +  +A +  ++  + +++++D  +  +   
Sbjct: 4   TILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRV-DFVIMDLMLPQLDGV 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +       + +  L  +      I G   GA+ +L KPF+ + L   ++ + + 
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120


>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
 gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
          Length = 237

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +    E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKV-NEIDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRR 120

Query: 122 KSKDEN 127
               + 
Sbjct: 121 DIVQKQ 126


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V    +  +     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
           ++   +   +A
Sbjct: 124 EALSRDTRAEA 134


>gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
           DSM 15981]
 gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    + +         G+    A    EA     +E  P+ +++D  +    
Sbjct: 1   MKKILIVDDERDIVECLDMNLRKKGYATAFAYDGTEAVLTARRE-RPDCILLDVMLPKIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    ++       + V  L  + + +  + G  AGA+ ++ KPF    L   +    
Sbjct: 60  GIEVCHLLKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVAL 119

Query: 119 QMQK 122
           +  +
Sbjct: 120 RRSQ 123


>gi|163794009|ref|ZP_02187982.1| regulatory components of sensory transduction system [alpha
           proteobacterium BAL199]
 gi|159180623|gb|EDP65142.1| regulatory components of sensory transduction system [alpha
           proteobacterium BAL199]
          Length = 326

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   L  D  + V  A     A         P+ +++D  M G    
Sbjct: 10  TVLVVDDTPDNLVLMSGLLKDH-YRVKVANGGERALTIAATAPQPDIVLLDVMMPGLDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P  +D+ V +L    D      G   GA  ++ KP +   +   +    Q+
Sbjct: 69  EVCRRLKAHPSTSDIPVVFLTARSDQADERRGLELGAVDYITKPISPPIVLARVHNHLQL 128

Query: 121 QKSKDENQ 128
           +++ D  +
Sbjct: 129 KQANDLLR 136


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + ++ R   +  G+ V  A+           +  P+ +V+D ++      
Sbjct: 13  RILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSGV 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    +  L    D    +    AG + +L+KPF+ E L   +R + +  +
Sbjct: 73  DICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRAQ 132


>gi|111224670|ref|YP_715464.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111152202|emb|CAJ63932.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Frankia alni ACN14a]
          Length = 259

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  R   +  G  V  A     A         P+ +V+D  +  +   
Sbjct: 18  RILIVEDEPQLLRAMRINLHSRGHEVRTAVDGAHALREAASHP-PDLVVLDLGLPDLDG- 75

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I  +R +   T V +  L         IA   AGA+ ++ KPF+ E L   +R + + 
Sbjct: 76  IDVIRGLRGWTRVPIIVLSGRTSGHDKIAALDAGADDYVTKPFSVEELLARIRAVTRR 133


>gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter carbinolicus DSM 2380]
          Length = 391

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I+ ++   +    GF V  A S  E  E  E+E  P+ +++D  M  +   
Sbjct: 4   RILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQES-PDLVLLDYMMPVMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      D +V  L  +   +  +   +AGA  ++LKPF  + L   +  + ++++
Sbjct: 63  TTLRHLRQAHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVLRIRR 122

Query: 123 SKDEN 127
            +  N
Sbjct: 123 IEIHN 127


>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
 gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
          Length = 241

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R++ +       F   EA    EA +   +      +++D  +  +
Sbjct: 1   MTNEILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDY-ACILLDLMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                   Q+    D  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +
Sbjct: 60  DGIEVAT-QLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLR 118

Query: 120 MQKSKDENQ 128
             ++    Q
Sbjct: 119 RTQTTTPEQ 127


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +RK+         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKLLILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHN-PDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      +R++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R + 
Sbjct: 60  MDGV-EIIRKIRAWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLR-VT 117

Query: 119 QMQKSKDENQ 128
           Q + +  +N+
Sbjct: 118 QRRLAMMQNR 127


>gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 242

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++ +      GF+   A     A+   +  +LP+ +++D  + 
Sbjct: 1   MKHLPRVLIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDT-MLPDVILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L      R+      + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLSLARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKDE 126
            + + +  + +
Sbjct: 120 AVLRRRAPESQ 130


>gi|332666853|ref|YP_004449641.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335667|gb|AEE52768.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1368

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 12/139 (8%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LLV+ +  V         +  + +  A    E  +    EL+P+ ++ D  M  +  F 
Sbjct: 1115 ILLVEDNPDVAAYLHSCLPE--YRLEFAKDGLEGFDKA-TELIPDLIISDVMMPRMDGFT 1171

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               H+R     + + +  L  + DFE  + G   GA+++L KPF  E LR  +++L +++
Sbjct: 1172 LCQHLRNDERSSHIPIILLTAKADFESKLTGLDRGADAYLEKPFQPEELRLRIKKLLELR 1231

Query: 122  KSKDE-------NQFLDAI 133
            +   +        + L A+
Sbjct: 1232 EKLKQHYLQAFGLRKLAAL 1250


>gi|310815788|ref|YP_003963752.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308754523|gb|ADO42452.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 243

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R +     +  GF V  A S  E  +       P+ +V+D  +    
Sbjct: 1   MNHILIVDDDPEIRSLLSRYLSGQGFRVTMAASRRECMQRL-SHETPDLVVLDVLLPDGS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                         V V  L    +    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 60  GLEMCRELSSANPHVPVVLLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRR 119

Query: 121 QKSKDEN 127
             S+ E 
Sbjct: 120 VASQPEE 126


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+++VD    +R++     +  GF V  A S  EA E  EK + P+ +V+D  +  +  F
Sbjct: 8   SIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEK-IQPDLIVLDVMLPDIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V YL    D +  + G   G + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126

Query: 123 SKDEN 127
            + E+
Sbjct: 127 EQVED 131


>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
 gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
          Length = 228

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   KIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRENVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124

Query: 121 QK 122
             
Sbjct: 125 SN 126


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 48  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 106

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 107 LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 166

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 167 DALARDSRIDA 177


>gi|116621521|ref|YP_823677.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224683|gb|ABJ83392.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 245

 Score =  141 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGV 59
           M  +L+V+    + +  R      G+ V    +   A E     E   + +V+D  + G 
Sbjct: 1   MSRILVVEDELHLAEGLRFNLEAEGYQVEVVETGEAALERLVPGEPRFDVVVLDVMLPGK 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F         G  +    L      E ++ G  AGA+ +L KPF    L   +R L +
Sbjct: 61  DGFTVMSEMRHAGQFIPTLMLTARGHAEDILHGFAAGADDYLTKPFELAILIARIRGLLR 120

Query: 120 MQK 122
            ++
Sbjct: 121 RRE 123


>gi|302843336|ref|XP_002953210.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f.
           nagariensis]
 gi|300261597|gb|EFJ45809.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f.
           nagariensis]
          Length = 1844

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 5/137 (3%)

Query: 2   DSLLL--VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEG 58
              LL  VD  H+ + V + L    G+ V    S  EA  +      LP+ +++D  M  
Sbjct: 770 KRFLLLSVDDDHVNQSVVKSLLGSTGYEVVAVPSGPEALRYVATAPALPDLVLLDCMMPE 829

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +     +  +R M     V +  +  + + E ++ G   GA+ ++ KPF R  L   +R 
Sbjct: 830 MDGYEVLQRLRAMTPNVHVPIIMVSAQTEEEHVVCGLDLGADDYVTKPFKRNELLARIRA 889

Query: 117 LPQMQKSKDENQFLDAI 133
                + + +   L+ I
Sbjct: 890 QLAYGEWEHDEDALETI 906



 Score =  123 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 8/126 (6%)

Query: 5    LLV--DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC----EKELLPNYLVIDESMEG 58
            L+V  D   + + V + +     +    A++  +   +        + P+ +++D S+  
Sbjct: 991  LIVCIDDDDVNQVVLQGMLASQHYRYVRASTGAQGLSYVCGTHNGGIPPDLVLLDCSLPD 1050

Query: 59   VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            +  F     +RQM     V V  L    +   ++ G + GAN+++ KPF R  L   +R+
Sbjct: 1051 MTGFDVCRCIRQMYNKQQVPVIMLSARHNESAVVEGLKCGANTYVTKPFRRNELLARIRQ 1110

Query: 117  LPQMQK 122
              + ++
Sbjct: 1111 HLRSRE 1116


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A +   A E  E    P+  ++D  M G+  F
Sbjct: 31  KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAET-YRPDAFILDVMMPGMDGF 89

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D    +L  +   E  I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 90  TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149

Query: 123 SKDENQ 128
             D  +
Sbjct: 150 KDDSEE 155


>gi|17228424|ref|NP_484972.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
 gi|75906731|ref|YP_321027.1| response regulator receiver domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|17130275|dbj|BAB72886.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
 gi|75700456|gb|ABA20132.1| Response regulator receiver domain protein (CheY) [Anabaena
           variabilis ATCC 29413]
          Length = 121

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   R++   L    G  V  AT   EA E  ++E  P+ +V+D  M  + 
Sbjct: 1   MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEP-PDLVVLDIVMPKMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +  + +      GF V  A            E   N +++D  + GV 
Sbjct: 1   MNKILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDY-NLIILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR      +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICRRVR---DEKNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQKSK-----DENQFLD 131
              +       +EN+ ++
Sbjct: 117 ARYERLIGSTIEENKVIE 134


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
 gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
           nagariensis]
          Length = 1021

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 4/129 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV--L 60
           +L VD   I + V  +L +  G+ V +A S  EA +F +K   LP+ +++D  M  +   
Sbjct: 539 VLSVDDDPINQMVVENLLSPEGYKVEQAMSGSEALDFLKKTATLPDVILLDIMMPDMSGY 598

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      + +  +  +   E ++ G  AG+  ++ KPF+R+ L   +R   + 
Sbjct: 599 EVCQEIRRRYSAVSIPIIMVSAKGHPEHVMKGLEAGSVDYVKKPFHRQELLSRIRAQVRN 658

Query: 121 QKS-KDENQ 128
           ++  + E +
Sbjct: 659 REIFEAEME 667


>gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 235

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN--YLVIDESMEG 58
           M+++L+ D    +    R      G  V  A++  EA +        +   +++D  M  
Sbjct: 1   MNNILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMPE 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   IA + ++   ++V +  L  + +    + G   GA+ ++ KPFN   L   ++   
Sbjct: 61  MDG-IAAMAEIRKTSNVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKSQL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +R +   +    GF V  A +             P+ +++D  +    
Sbjct: 1   MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIEL-NSFRPDLVLLDLMLPDCS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    + +    +++ V  +  + +    + G   GA  ++ KPF+   L   ++ + 
Sbjct: 60  GYDLCKEIVKQ---SNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVL 116

Query: 119 QMQKSKDENQ 128
           +  +  DE +
Sbjct: 117 RRYEHNDEAK 126


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+LLV+   ++ +V +      G+ V+ A    EA E  + E  P+ +++D  +    
Sbjct: 1   MKSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFD-EKKPDLVLLDVMLPERN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R+        V  +      ++ + G   GA+ ++ KPF  + +   +  + 
Sbjct: 60  GWEILQYIREKSS---CPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|224538757|ref|ZP_03679296.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519649|gb|EEF88754.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1434

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            + +L+++ +  +R    ++ +   ++VFEA +  +  +    E +P+ ++ D  M  +  
Sbjct: 1169 NRILIIEDNEELRHFICNVLSK-DYVVFEAENGKQGLDKALAE-MPDIVISDIMMPEMDG 1226

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              F+  V+       + V  L  +      I G   GA+ ++ KPF+   L+  +  L +
Sbjct: 1227 IEFLKRVKANSNICHIPVILLSAKSSLSDQIQGLEYGADEYITKPFSSTYLKAKVDSLFK 1286

Query: 120  MQKS 123
             ++ 
Sbjct: 1287 QRQM 1290


>gi|46014956|pdb|1NXT|A Chain A, Micarec Ph 4.0
 gi|116666721|pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
          Length = 120

 Score =  141 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ V  A +  EA E  E E  P+ +++   +  + 
Sbjct: 1   MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE-QPDIIILXLMLPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V +  L  +      + G   GA+ ++ KPF+   L+  ++ L + 
Sbjct: 60  GLEVA-KTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SQ 120


>gi|315919226|ref|ZP_07915466.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693101|gb|EFS29936.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1381

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLV+ +  +R   +     + + V EA +  +A E   KE  P+ +V D  M G+  
Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1177

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                + ++       + V  L        +  G  +GA+ +++KPFN + L   +  L  
Sbjct: 1178 LELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1237

Query: 120  MQKSKD 125
             ++   
Sbjct: 1238 QREKLK 1243


>gi|294054856|ref|YP_003548514.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614189|gb|ADE54344.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 371

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I  K+ +      G  V  A +  E  +  E E  P+ +++D  M  +   
Sbjct: 8   RILVVDDQPINIKLLQRKLERQGLEVLVAYNGRECLKVVE-ESKPDLILLDVMMPEMDGI 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++  P    + + ++  +   E  + G  AGA  ++ KP + +     +R   ++
Sbjct: 67  ETCQHLKANPETETIPIMFITAKASKEGKLEGLDAGAVDYITKPIDLDETLARVRTQLRL 126

Query: 121 QKSKDENQFLDA 132
           Q+   EN  L  
Sbjct: 127 QEMFRENLDLQE 138


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+ D    +RK+ R       + V EA +  +A +    +   + +++D  M  V  
Sbjct: 4   NKILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPKVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F A ++++   + + V  L  + +   ++ G   GA+ ++ KPF+ + L   +  + + 
Sbjct: 64  F-AVLKEIRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRR 121


>gi|260170896|ref|ZP_05757308.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
          Length = 1381

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLV+ +  +R   +     + + V EA +  +A E   KE  P+ +V D  M G+  
Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKE-FPDLVVTDIMMPGIDG 1177

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                + ++       + V  L        +  G  +GA+ +++KPFN + L   +  L  
Sbjct: 1178 LELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLA 1237

Query: 120  MQKSKD 125
             ++   
Sbjct: 1238 QREKLK 1243


>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 225

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIE-NRNFKFVLLDIMMPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     ++V +  +        ++ G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + K         G+ V  A           +E  P+ L++D  + GV    
Sbjct: 5   ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATA-RESQPDLLILDWMLPGVSGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G  V +  L  + +    +AG  AGA+ +++KPF+ E L   +R   +  + 
Sbjct: 64  ICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQE 123

Query: 124 KDEN 127
           +D +
Sbjct: 124 EDPD 127


>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
 gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +   +  G++V EA    EA +          +++D  M  +   
Sbjct: 5   KVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L  + D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  ETCKEIRK---FSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRR 121


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  LDA
Sbjct: 124 DALARDSRLDA 134


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    V KV     N  G+ V  A    +A E   KE  P+ +V+D  +  + 
Sbjct: 1   MTCILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKE-APDLVVLDVMLPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + 
Sbjct: 60  GFAVCRRIRAESC---VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKTIRK--ENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 239

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R +      + GF V  A +  +  +        + +V+D  + G   
Sbjct: 5   NKILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQ-MDRLLTRESVSLIVLDLMLPGEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       V +  +    +    I G   GA+ ++ KPFN   L   +R + + Q
Sbjct: 64  LSVCQRLRNQSNPVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123

Query: 122 KSK 124
            +K
Sbjct: 124 ANK 126


>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +RK+ +      GF V EA+   EA E   +  + + +++D  +    
Sbjct: 1   MK-ILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKF-QPSMYSVVILDVMLPQKD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     D  V  L    + +  I G   GA+ +++KP + + +   ++ + 
Sbjct: 59  GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115

Query: 119 QMQKSKDENQFL 130
           +  K    N  L
Sbjct: 116 KRTKKPSSNDIL 127


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF    A     A E        + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAAND-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCKQLR---TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E  ++   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKTE 122


>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
 gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
          Length = 238

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDIMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L +D    +  V +      G+ V   T+   A     K + P+ +++D  + G+ 
Sbjct: 1   MK-ILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTF-KTVNPDLVILDLMLPGMS 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +     V +  L  +V  +  + G   GA+ +L KPF+   L   ++ + 
Sbjct: 59  GEEICRKIRALSK---VPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAIL 115

Query: 119 QMQKS 123
           +  K+
Sbjct: 116 RRTKN 120


>gi|255693555|ref|ZP_05417230.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260620620|gb|EEX43491.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1355

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
             +L+V+ +  +R   +  F    + V +      A E+  ++   + ++ D  M G    
Sbjct: 1099 RILIVEDNDDLRFYLKKTFASI-YTVIDKPDGESALEYL-QDKSVDLIISDVMMPGIQGD 1156

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  + + + ++ G  +GAN +L KPF+ E L+  ++ + Q 
Sbjct: 1157 ELCRRIKSDFTTSHIPVILLTAKTEKDAILEGLESGANDYLTKPFDTEILKTKIKGVLQN 1216

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1217 RKIMRQ 1222


>gi|182412631|ref|YP_001817697.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177839845|gb|ACB74097.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 367

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +     V        G+ +  A    EA      + +P+ +++D  M G+  F
Sbjct: 4   TILIVDDTPANLCVLVETLGAAGYRLMVAEDGEEALAQ-TAQTVPDLILLDVMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   D  V ++    +    +    AG   ++ KP   E     +R    +
Sbjct: 63  ETCRRLRAQPTTADTPVLFMTALNETPDKVKAFAAGGVDYITKPIEHEEALARVRTHLTL 122

Query: 121 QKSKDENQFLDAI 133
           ++ + E     AI
Sbjct: 123 RRLRHELAEQLAI 135


>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 227

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 18/144 (12%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+    +R +        GF V  A    EA +   +++ P+ +V+D  + G    E
Sbjct: 5   ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIW-QDIKPDLIVLDLMLPGLSGWE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +RQ     +  +  L   VD    + G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 64  VMKKIRQK---NNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRS 120

Query: 122 KSKDEN------------QFLDAI 133
           +  ++             + L+A+
Sbjct: 121 RPHEQVTNVSISNLSINPERLEAL 144


>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLVD    +R+  +    + GF V  A++  E  E+ +    P+ ++ D  M      +
Sbjct: 5   LLLVDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNT-PDLVISDVMMPQVDGYQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R+ P    + V +L  +      I G  AG +++L KPF+ + L   +  L   +
Sbjct: 64  FLKQLREDPRFQALPVVFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLLARR 123

Query: 122 KSK 124
            +K
Sbjct: 124 AAK 126


>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1299

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +LLV+ ++  R   +       F+VFEA+   E  E    +  P+ ++ D  M  +   
Sbjct: 1053 KILLVEDNNDFRHYLQEELRRH-FVVFEASDGEEG-EAVALQQKPDIIITDLMMPKMDGI 1110

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + +  L      E    G + GA++++ KPF  E L   +  L   
Sbjct: 1111 ELCKRIKHNIDVSHIPIILLTASASMENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1170

Query: 121  QKSKDENQF 129
            ++ + +N+F
Sbjct: 1171 RR-QQQNEF 1178


>gi|298384579|ref|ZP_06994139.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298262858|gb|EFI05722.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1350

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LLLV+ +  +  +   + +   + V  A    EA     K+   + ++ D  M  +    
Sbjct: 1104 LLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALN-VIKDNEIDIIISDVMMPEMDGLE 1161

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F   ++     + + +  L  +   E  I    AGA+ ++ KPF  + L   +      +
Sbjct: 1162 FCRTLKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1221

Query: 122  KSKDEN 127
            K+K E 
Sbjct: 1222 KNKQEE 1227


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    + +         G+    A       E   +E   + +++D  +     
Sbjct: 7   KRILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKA-QEGNWDLILLDLMLPEING 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     +DV +  +         ++G   GA+ +++KPF  E L   +R L +
Sbjct: 66  IEVCRRLR---PTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLR 122

Query: 120 MQKSKDENQ 128
               ++E Q
Sbjct: 123 RIDIEEEQQ 131


>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1010

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +  +R   + L     + +  A +   A E       P  ++ D  M  +   
Sbjct: 629 RVLIVDDNADMRDYLQRLLEKQ-YYIETAANGKLALEKIATH-QPELIISDVMMPEMDGI 686

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + HV+  P    + V  +      E  I G   GA+ +L KPF+ + L+  +R   ++
Sbjct: 687 ELLHHVKHNPATESLPVILVSARAGEEATIEGYDIGADDYLTKPFSAKELQARVRAQIRV 746

Query: 121 QKSKD 125
            +   
Sbjct: 747 SRLHR 751


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +     EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLE-EKEFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
 gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
          Length = 257

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD +  +R++   L    GF V EA +  +A    E++   + +++D  M G    +
Sbjct: 6   ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQD-FDLIILDIMMPGPNGYQ 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   ++  + +L           G  +G + +L KPF+   L    + L +  
Sbjct: 65  TCRKIREL---SNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRY 121

Query: 122 K 122
           +
Sbjct: 122 Q 122


>gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 235

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL +    + +  +      G+ V  A +  +A +   KE   N +++D  M  +  
Sbjct: 5   KRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKF-KEERFNLVILDVMMPEIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F+         ++V + +L  +   E  +AG + GA+ +L KPFN E L   +  L + 
Sbjct: 64  FVVAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKR 122


>gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1354

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL+VD +    +  R   +   + V  A    +A +   +E LP+ ++ D  M     +
Sbjct: 1107 TLLVVDDNADFLEFMRLSLSSA-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1164

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  + G  AGA+ ++ KPFN E L   +R L +M
Sbjct: 1165 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1224

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1225 KKKMQK 1230


>gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 244

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ +      ++ R      G  V        A     +   P+ LV+D  + G+    
Sbjct: 5   VLVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRP-PDLLVLDWMLPGLDGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R    G ++ +  L      + ++ G   GA+ ++ KPF    L   +R L +  +
Sbjct: 64  VCRRLRGAG-ELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRRSR 121


>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
 gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA    E +  PN +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFE-QYNPNLILLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR      +V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCREVRAKA---NVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDENQFL 130
             +     + +
Sbjct: 121 RYQPVKTEEVI 131


>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 234

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +R+V  +     G+ V        A E      + + +V+D  +     
Sbjct: 3   KHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTV-DLVVLDVMLPELDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R    G+   + +L    D    I G   G + +L KPF+   L   +R L +
Sbjct: 62  LEVCRRLRA---GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RTE 121


>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1311

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +   R   +   +   F V EA+   E  E    +  P+ ++ D  M  +   
Sbjct: 1065 TILLVEDNDEFRHYLQEELSRH-FTVLEASDGEEG-ETVALQQKPDIIITDLMMPKMDGI 1122

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E    G + GA++++ KPF  E L   +  L   
Sbjct: 1123 ELCKRIKHNIEVSHIPVILLTASASVENEERGYKEGADAYMTKPFKWEILTARIHNLLAQ 1182

Query: 121  QKSKDENQF 129
            ++ + +N+F
Sbjct: 1183 RR-QQQNEF 1190


>gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 254

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M   ++L+ D    +  +        G+   +A++  EA +  + + + +  ++D  M  
Sbjct: 1   MKPITVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSV-DLAILDIMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E    +R+      + + +L  +      I G   GA+ ++ KPFN   L   +  
Sbjct: 60  IDGYEVTRQIREK---HHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320]
 gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response
           regulator) [Proteus mirabilis HI4320]
 gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 240

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF +  A +  +  +        + +V+D  + G    
Sbjct: 6   KVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQ-MDRLLTRESIHLIVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +  + GF         +A +   +   P+ +++D  + G+
Sbjct: 1   MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVF-RSSRPDLVLLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR     +DV +  L  + D   ++ G  +GA+ ++ KPF    L   +R  
Sbjct: 60  DGIEVCRQVRAE---SDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRAR 116

Query: 118 PQ 119
            +
Sbjct: 117 LR 118


>gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    +         +FG  V             ++E   + +++D  M    
Sbjct: 1   MAKILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEP-FDLVILDIIMPKIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQM       V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLELCHLYRQMFGY-QAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQKSKDENQF 129
           +  K    NQ 
Sbjct: 119 RRNKETVTNQL 129


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLVILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+V+    +  + ++     G+    A S  EA +  ++  + N +++D  + G+  
Sbjct: 4   TSILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAV-NLVLLDIMLPGIDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ    +D+ +  L  + +    + G   G + +++KPF+   L   +R + +
Sbjct: 63  FEVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILK 122

Query: 120 MQKSKDEN 127
             +    N
Sbjct: 123 RDRRNRSN 130


>gi|53725149|ref|YP_102516.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           23344]
 gi|67639865|ref|ZP_00438695.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|121599948|ref|YP_992333.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1]
 gi|124384760|ref|YP_001028967.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10229]
 gi|126449935|ref|YP_001081118.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10247]
 gi|166999933|ref|ZP_02265762.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254177571|ref|ZP_04884226.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           10399]
 gi|254199424|ref|ZP_04905790.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|254205739|ref|ZP_04912091.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|254357895|ref|ZP_04974168.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|52428572|gb|AAU49165.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           23344]
 gi|121228758|gb|ABM51276.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1]
 gi|124292780|gb|ABN02049.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10229]
 gi|126242805|gb|ABO05898.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
           10247]
 gi|147749020|gb|EDK56094.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|147753182|gb|EDK60247.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|148027022|gb|EDK85043.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|160698610|gb|EDP88580.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
           10399]
 gi|238520472|gb|EEP83932.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|243064054|gb|EES46240.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
          Length = 232

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +R + R      G  V          E   +   P+ +V+D  M GV
Sbjct: 1   MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAAS-LEKRLERERPDLIVLDLMMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +    G D+ V  L    D    I G   GA+ +L KPFN   L    + + +
Sbjct: 60  DGLTVLRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLR 119

Query: 120 MQKS 123
            +++
Sbjct: 120 RRRA 123


>gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
 gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
          Length = 254

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +      
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQ-MDRLLQRELFSLIVLDFMLPVEDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 81  SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139


>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 232

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+ D    + ++        G+ V +AT    A E  + +   + +V+D  M  
Sbjct: 1   MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQ-AIDLVVLDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+    ++ + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM-----QKSKDENQFLDA 132
           +      Q   +E   L+A
Sbjct: 119 RRFLTLNQPKVEETSVLEA 137


>gi|86606963|ref|YP_475726.1| response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555505|gb|ABD00463.1| response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 344

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD     R +   L    G+ V EA +  +A +     L P+ +++D  M G+  F 
Sbjct: 29  LLIVDDQPHSRLLLGDLLESIGYRVSEAENGQQALQMLPS-LQPDLVLLDVMMPGLDGFE 87

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  +    D +  + G  AGA+ FL KPF+   L   +R L + +
Sbjct: 88  VCRRIKADEETRLIPVVLIAAASDRKNRLRGIEAGADDFLSKPFDESELLARVRSLVRQK 147

Query: 122 KSKDEN----QFLDAI 133
              ++     Q L AI
Sbjct: 148 HLNEDLDHAAQVLFAI 163


>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  +        G+ V +A +  +A     +E  P+ +V+D  M G+    
Sbjct: 6   ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEED-PDLVVLDIMMPGMDGLE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+     +V +  L  + +    I G + GA+ +L KPFN   L   ++   + 
Sbjct: 65  VCRAIRRE---RNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRR 120


>gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 261

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + +  R    D  + V  A     A +   +E   + +++D  + G+ 
Sbjct: 20  MATILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLA-REKQIDLVLLDIGLPGLD 78

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  +         + G   GA+ +++KPF+   L   ++   
Sbjct: 79  GFSVCRVLREDL---HIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHL 135

Query: 119 QMQKSKDENQFLDAI 133
           + ++   + +   A+
Sbjct: 136 RREQRYRQPKRRMAL 150


>gi|87120074|ref|ZP_01075970.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86164776|gb|EAQ66045.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 244

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    V+++        G+ V  A++   A     +E +P+ +++D  M  +   
Sbjct: 20  TILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAAL-LALEERVPDLILLDIMMPEMDGY 78

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            FI  +RQ     D+ V  +  +     +I G   GA+ +L+KPF    L   ++ + + 
Sbjct: 79  GFIHTMRQ---THDLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKAVLRR 135


>gi|326797266|ref|YP_004315086.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326548030|gb|ADZ93250.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 298

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 12/141 (8%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     + +VD  + +R + +       F V  A S     E    +L    +++D  + 
Sbjct: 51  MTKSRYVYVVDDDNDIRSLLKSYLERHQFQVLTAESGEAFLEDFHADLNVELVILDVMLP 110

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   F     +R       V V  L    D    I G   GA+ +L KPFN   L   M+
Sbjct: 111 GQDGFAVCRALRTQSE---VPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMK 167

Query: 116 ELPQMQK----SKDENQFLDA 132
            + +  +     K+E +   A
Sbjct: 168 AILRRIEPNDPIKEEQEKAKA 188


>gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7]
 gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 240

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60
             +LL++    + ++     +   + V  A +     +  + KE   + +V+D  +  + 
Sbjct: 3   KQILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMD 62

Query: 61  E--FIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  VR         V +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 63  GMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122

Query: 117 LPQMQKSKDE 126
           + +  ++ ++
Sbjct: 123 VLRRHETPNQ 132


>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      GF V   T+     +  +KE  P+ +++D  + G+  
Sbjct: 3   KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|153875315|ref|ZP_02003172.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152068221|gb|EDN66828.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 383

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD       V     +D GF V  A +  +A     +   P+ +++D  M G+  
Sbjct: 7   NTILIVDDIQENISVLFRFLSDEGFKVLIAQNGEQAL-RISEIGHPDLILLDVMMPGMSG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      ++ + ++    D    I G   GA  ++ KP  +E +   +    +
Sbjct: 66  FEVCNQLKNNEKTQEIPIIFMTALTDIVDKIKGFSLGAADYITKPIQQEEVLARVNTHIK 125

Query: 120 M 120
           +
Sbjct: 126 I 126


>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
 gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEA-EIALRESVPDLLILDWMLPGVSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 65  ELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  ATS   A     ++  P+ +V+D  +  +  F
Sbjct: 12  RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAA-RDHRPDLVVLDVMLPDLDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    GT   V +L      +  I G   G + ++ KPF+ E L   +R + +   
Sbjct: 71  EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTS 130

Query: 123 SKDE 126
           + ++
Sbjct: 131 TGEQ 134


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    V  + +  F   G++VF A +  EA +   ++  P+ +++D +M    
Sbjct: 1   MYKILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQASRQ--PDIILLDINMPEAD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R         + +L   ++    ++G  AG + +++KPF+ E L   +    
Sbjct: 59  GIEVCRRIR---DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHI 115

Query: 119 QMQKSKDENQ 128
           + +      +
Sbjct: 116 RRENRSAAKR 125


>gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510]
          Length = 249

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R +        GF V  A    E       +   + +++D  + G   
Sbjct: 5   RHLLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGRE-MARVLAQWPVDLIILDLMLPGEDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         V  L         I G   GA+ +L+KPF+   L   +R + +
Sbjct: 64  TSLCRSLRAKSG---TPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVD-EYDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKTE 123


>gi|172038233|ref|YP_001804734.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699687|gb|ACB52668.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 384

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LL+D    +R +        G+ V       E      KEL P  ++ D  M G  
Sbjct: 1   MVQILLIDDDRTIRSLLERTLKRQGYDVVCVDKGAEGLIKA-KELHPAMIICDWVMPGIT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    V+++P     F   L      E  + G  AGA+ FL KP         +R   
Sbjct: 60  GLEVCRQVKRIPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGL 119

Query: 119 QMQKSKDEN 127
           ++ +   + 
Sbjct: 120 RLHQLSQDL 128


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    +  + +      G+ V  A    +       +  P+++V+D  +  +   
Sbjct: 6   NVLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGL-IDYYDHQPDFIVLDIMLPKIDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     +V V  +  + +    I G   GA+ +++KPF+ + +   M+ + + 
Sbjct: 65  EVCREIRKD---RNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRR 121


>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
 gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
           hollisae CIP 101886]
          Length = 1125

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD   +  ++  +     G+ V    +  +A E    E  P  +++D  M      E
Sbjct: 719 ILVVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEK-PALMLLDVMMPELSGYE 777

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
              H+R+     ++ +  L      +  + G  AGAN +L KPFN++ L   +R      
Sbjct: 778 VCTHLRERYSRAELPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDELSARIRAYINAS 837

Query: 120 -MQKSKDENQFLD 131
             ++ + +N+ L 
Sbjct: 838 LTEQERAQNRALQ 850


>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--I 63
           +VD    +R++     +  GF V  A    + R+  E+E  P+ +V+D  M G       
Sbjct: 12  VVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREK-PDLVVLDIMMPGEDGLALC 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
            H+R     T + + +L    +    I G   GA+ +L+KPFN   L   +R + +   +
Sbjct: 71  RHLRAE---TQIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRRVGT 127

Query: 124 KDENQ 128
             E +
Sbjct: 128 LPEIR 132


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  ATS   A     K+  P+ +V+D  +  +  F
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAA-KDHRPDLVVLDVMLPDLDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    V +L      +  I G   G + ++ KPF+ E L   +R + +   
Sbjct: 68  EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSA 127

Query: 123 SKDE 126
           S ++
Sbjct: 128 SGEQ 131


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +      ++ GF V  A+    A         P+ +V+D  M G+   
Sbjct: 8   RVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREA-ASFEPHVIVLDVMMPGMDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G D+ V  L  + + +  + G   GA+ ++ KPF+ E L   ++   + Q
Sbjct: 67  AVCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQ 125


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    + ++        GF V  A +  E  +       P+ L++D  M G+  F  
Sbjct: 2   LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARA-FRPDALILDVMMPGMDGFGM 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R    G D  V +L      E  + G   GA+ ++ KPF+ E +   +R + +     
Sbjct: 61  LRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHS 120

Query: 125 DENQ 128
           D+ Q
Sbjct: 121 DDKQ 124


>gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
 gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
          Length = 263

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 29  KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 87

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 88  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 146


>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 116

Query: 119 QMQKSKD 125
           +  K ++
Sbjct: 117 RRVKKEE 123


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 2   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 61  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 118

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 119 RRIEVHDE 126


>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    +R + R       F VFEA++  E       +   + +++D  M  +
Sbjct: 1   MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQK-IDLVILDIMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +   + + V V  L  + + +  + G   GA+ ++ KPF+ + L   ++ L +
Sbjct: 60  DGMTMLEKLREV-STVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLK 118

Query: 120 MQK 122
             +
Sbjct: 119 RSR 121


>gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99]
 gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99]
          Length = 241

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|153808930|ref|ZP_01961598.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
 gi|149128263|gb|EDM19482.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
          Length = 1384

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +S+L+++ +  +  +   L     + VF A +  E     E E   + +V D  M  +  
Sbjct: 1127 NSILVIEDNEELLHLMTKLLRHE-YNVFTAENGKEGIAVLENED-IDLIVSDVMMPEMDG 1184

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              F  +V+     + + V  L  +   E        GA++F+ KPFN   L   +R L +
Sbjct: 1185 MEFCKYVKGKLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLK 1244

Query: 120  MQK 122
             ++
Sbjct: 1245 YKE 1247


>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
 gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
          Length = 1039

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L VD   +  +V   L    G  V       EA          + ++ D  M  +  +
Sbjct: 706 KVLAVDDDEVNLRVLEELLYTTGCSVVAVDHAEEALHMLNGRTRFDLVITDWMMPEMSGI 765

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +++ V  L        + AG  AGAN FL KP + E L+  +R L  M
Sbjct: 766 ELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVDAEELKARVRTLLNM 825

Query: 121 QKSKDENQFLD 131
           + S +E    +
Sbjct: 826 RHSAEEAVRSE 836


>gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
 gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase
           [Azospirillum sp. B510]
          Length = 310

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       V   +  D  + ++ AT    A E  +   +P+ +++D  M G+  F
Sbjct: 7   KILVVDDIPSNVHVLSRILKD-DYDIYFATDGERALELVQS-RMPDLVLLDIMMPGMDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V ++  + + E    G   GA  F+ KP +   +R  +R    +
Sbjct: 65  EVCRRIKADPATHDIPVIFISAKGEVEDETRGLEVGAIDFITKPISPPIVRARVRNHLLL 124

Query: 121 QKSKDENQFLD 131
           ++  D  + L 
Sbjct: 125 KRQADLLRSLS 135


>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    + ++ R      GF V       EA      +  P+ +++D  +  + 
Sbjct: 1   MKHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSF-TQRKPSLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ +L KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQ 128
           +    K E +
Sbjct: 117 RRLDRKSEPE 126


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 119 RHYSQPAQE 127


>gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Burkholderia thailandensis
           MSMB43]
          Length = 709

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD +    ++        G  V  A S  EA    +  ++P+ +++D  M G+  
Sbjct: 13  QTVLVVDDTPANLELAVSALEADGLEVLVAQSGEEAIRRAQL-VVPDLVLLDVMMPGIDG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++ +    D  V ++    D +  +AG  AG   +L KPF    L   ++    
Sbjct: 72  FETCRRLKAIDHTRDAPVIFMTALSDVQDKVAGFAAGGIDYLTKPFQIVELAARVKTHLA 131

Query: 120 MQKSKDENQFLDA 132
           ++ ++ +    +A
Sbjct: 132 LRAAQRQLVLANA 144


>gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
 gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
          Length = 257

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R + +   +   + V  A    E  E C ++   + +V+D  + G     
Sbjct: 12  LLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDE-MEQCLRDNTIDLIVLDLMLPGKDGLT 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++ + +++ V  L    +    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 71  LC-RELRVHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRR 126


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 5/137 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   LL+V+    + ++  +     G+ V        A E   ++  P+ L++D  + G
Sbjct: 1   MNKADLLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEV-RQKRPDLLLLDWMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              LE    +R  P    + +  L    +    I G   GA+ +L+KPF+ E L   ++ 
Sbjct: 60  ISGLEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKA 119

Query: 117 LPQMQKSKDENQFLDAI 133
           + +     D+    D +
Sbjct: 120 MLRRLPPADKTLRFDTL 136


>gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3]
 gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3]
          Length = 456

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    +A + C +E   + +++D  M G+  F
Sbjct: 4   RVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALDICNQE-QVDIILLDIMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKANPKTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +    
Sbjct: 123 KAVSDELRLRAE 134



 Score = 61.4 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 39/129 (30%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            +L+ D     ++            V   T    A            ++++ + E     
Sbjct: 156 RVLVADGRASSQERIVRALKPV-AEVDAVTEPQAALLKAASNP-FELVIVNSNFEDYDPL 213

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     + +  +  +   + +      G N ++L+P +   L        + 
Sbjct: 214 RLCSQLRSLERTRFLPLLLVAEQGADDMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273

Query: 121 QKSKDENQF 129
           ++  +  + 
Sbjct: 274 KRYNEHLRL 282


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++     ++ G+   +A    EA            L++D  M  + 
Sbjct: 13  MK-ILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMD 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L + 
Sbjct: 72  GM-QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 130

Query: 121 QKSKD 125
            K + 
Sbjct: 131 TKMQA 135


>gi|255532713|ref|YP_003093085.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345697|gb|ACU05023.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1374

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             LL+VD +  +    ++ F++  + V  A    EA    ++E   + ++ D  M  +   
Sbjct: 1122 KLLVVDDNPEIVDYLKNYFSNI-YQVSVAYDGKEALGLLDEE-QVDLIICDVMMPELDGI 1179

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   ++Q      + V  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 1180 HFCKKIKQNIRTCHIPVVLLTAKNETNHQIKGLEVGADDYVTKPFSIALLEAKLQNISRS 1239

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1240 RKRLKE 1245


>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 225

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+ D    +R++        G+ VFEA    EA      +   +  +ID  M    
Sbjct: 1   MATILVADDDQFIRELITLYLKKEGYTVFEANDGEEA-SSILSQQTIHLCLIDVMMPNKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      D+ +  +  + + E  I G + G + ++ KPF+   L   ++ L 
Sbjct: 60  GWELCREIR---DLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRYK 120


>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
 gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 245

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R + R      GF V  A     A          + +V+D  M G    
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFDVILAEDSK-ALNRIMLRDAVDLIVLDLMMPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  + +    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 71  SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRR 129


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +  +K   P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDK-YDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDENQ 128
               + +
Sbjct: 121 DIVKKAE 127


>gi|325300130|ref|YP_004260047.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324319683|gb|ADY37574.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1442

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R     + +   + V  A +     +   KE LP+ ++ D  M  +   
Sbjct: 1180 SILIVEDNDELRTSLADILS-VRYRVLTAVNGEAGWDMARKE-LPDMILTDVMMPVMDGL 1237

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + +  L  +   +  I     G + ++ KPF+   L   + ++ + 
Sbjct: 1238 EMVRQLKNDAEVCHIPIIVLSAKASLDDRIQALDQGIDDYITKPFSAAYLEARIGQVFRQ 1297

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1298 RERLQE 1303


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M + +L+V+    + ++  +     G  V +A +V EA++  E    P+ +++D  +   
Sbjct: 2   MTTSVLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAK-PDIILLDWMLPDC 60

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L+++  +R       + V  L      +  + G  AGA+ ++ KPF+   L   +R +
Sbjct: 61  AGLDWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAV 120

Query: 118 PQMQ 121
            + +
Sbjct: 121 IRRK 124


>gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361]
 gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    + ++ +      G+ V +A S  EA E        + L++D  M G+  F
Sbjct: 9   SILVVDDEDDLCEILKFNLETEGYHVEKANSAEEALEM--DLPAFDLLLLDVMMGGMSGF 66

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ + +L         + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 67  AMAQKLKANPATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR 126

Query: 121 QKSKDENQ 128
              +D  Q
Sbjct: 127 TDDRDHEQ 134


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    ++ +        G+ V  A++  EA      +   + +++D  M  +
Sbjct: 1   MKEKILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLI-GDYNYDLVILDIMMPKL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  ++       + + +L  + +    I G   GA+ ++ KPF    L   ++   +
Sbjct: 60  DGILTCIKIREKF-TMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLR 118

Query: 120 MQK 122
             K
Sbjct: 119 RYK 121


>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB056]
 gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB058]
 gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB059]
 gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii AYE]
 gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       +A     ++  PN +++D  +  + 
Sbjct: 1   MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNF-QQRKPNLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|124006366|ref|ZP_01691200.1| response Regulator Receiver Signal Transduction Histidine Kinase
           [Microscilla marina ATCC 23134]
 gi|123988023|gb|EAY27694.1| response Regulator Receiver Signal Transduction Histidine Kinase
           [Microscilla marina ATCC 23134]
          Length = 382

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 4/135 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD +     V      D G+ +  A     A E     + P+ +++D  M G+
Sbjct: 9   MKGKILIVDDTPANIGVILSYLRDQGYKMLVAEDGESAIEQVGF-MKPDLILMDIMMPGL 67

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     ++      D+ + ++    +    + G + GA  ++ KPF +E +   ++  
Sbjct: 68  NGFETCTSLKANKETADIPIIFMSALNETVDKVKGFQLGAVDYITKPFQQEEVLARIKTH 127

Query: 118 PQMQKSKDENQFLDA 132
            +M+  + E +  +A
Sbjct: 128 LKMESLQKELKLTNA 142


>gi|329928021|ref|ZP_08282025.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938125|gb|EGG34522.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 329

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           LLVD   +  +V R L +   + +  A +  +A E        + ++ D  M G+     
Sbjct: 2   LLVDDDPVNLQVLRSLLSAENYHLISAGNGAQALEHIRSGQGIDLVITDWMMPGMSGLQL 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              VRQ     ++ +  L      + +  G +AGAN FL KP   + LR  +R L ++++
Sbjct: 62  CMTVRQQFTLFELPMLMLTARSLPDDVRTGLQAGANDFLRKPVEADELRARVRNLLELRR 121

Query: 123 SKDE 126
           S  +
Sbjct: 122 SVRQ 125


>gi|261867362|ref|YP_003255284.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293390893|ref|ZP_06635227.1| transcriptional regulatory protein CpxR [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261412694|gb|ACX82065.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951427|gb|EFE01546.1| transcriptional regulatory protein CpxR [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++   L +  GF V  A +  EA E    +   + +++D  M  + 
Sbjct: 1   MAKILLVDDDAELTELLAQLLDLEGFQVNVANNGKEALELL--DHSYDLILLDIMMPVLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++Q+       V  L    D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 59  G-IETLKQIRKNYSTPVMMLTARGDDIDRILGLELGADDYLPKPFNDRELVARIKAILRR 117


>gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D    +R+V        G      +    A    E+   P+ +V+D  M  +    
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHT-PDLVVLDIGMPEMDGLE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +DV V +L    +    I G   G + ++ KPF+   L   +  + +  
Sbjct: 64  VCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRA 120

Query: 122 K 122
           +
Sbjct: 121 R 121


>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 11/138 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++++VD    +R+V        GF    A    +A E    E  P+ +++D  M  +   
Sbjct: 6   TIMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMF-AEATPDLVILDILMPEMDGT 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +DV + +L  + D    I G   G + ++ KPF+   L   ++   + 
Sbjct: 65  EVCKKIRAH---SDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRR 121

Query: 121 QKSKDE-----NQFLDAI 133
           + ++ +      + L AI
Sbjct: 122 RLTEAKPAVSLQEKLGAI 139


>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
 gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
          Length = 1390

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D +  +R     L    G+ V   +   +A E    E LP+ +V D  M G   L
Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAE-LPDLVVSDVMMPGLDGL 696

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +A +R       + V  L      E  I G  AGA+ +L+KPF    L   +     +
Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHANVAL 756

Query: 121 QKSKDENQF 129
            + ++ +  
Sbjct: 757 ARLRNHHSR 765


>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    VR +      + G+ V  A+   E      + + P+ +++D  M     
Sbjct: 3   QTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGL-IIARRVRPDLVLLDIMMPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+   R+        V  L   +D    + G   GA+ ++ KPF+ + L   +R + +
Sbjct: 62  FGFLQAYRRE---HQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLR 118

Query: 120 MQKSKDE 126
              +  +
Sbjct: 119 RTAAARQ 125


>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E    +   + +V+D  + G+ 
Sbjct: 36  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGMQGAIDLVVLDLGLPGMD 94

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 95  GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154


>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 260

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E    +   + +V+D  + G+ 
Sbjct: 36  MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGMQGAIDLVVLDLGLPGMD 94

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 95  GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154


>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 230

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G++V +A +  EA +  E E   + +++D  M  V   
Sbjct: 5   TILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVE-ERQIDLIILDVMMPVVNGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      +  +  L  +V+    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 64  DACIKIREQY-NTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRR 120


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++LL +    +R          G+ V   +   EA     +E  P+ +V+D  M GV  
Sbjct: 3   NTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREH-PDVIVLDVMMPGVDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G    +  L   V+    I G  AGA+ ++ KPF+ E +   +R L +
Sbjct: 62  IQVCRVLRA--EGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|254507777|ref|ZP_05119908.1| response regulator [Vibrio parahaemolyticus 16]
 gi|219549302|gb|EED26296.1| response regulator [Vibrio parahaemolyticus 16]
          Length = 240

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        G++V       + +   E+   P  +++D  + G   F
Sbjct: 4   KILVVDDDQEIRELLDEYLTKSGYLVDTVADGEQLKLHLEQTGYPELVLLDVMLPGDDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++R+      V +  L    D    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 64  TLCQYIRRESS---VPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAVLRR 120

Query: 121 QKSKD 125
            +  D
Sbjct: 121 VQLSD 125


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  LDA
Sbjct: 124 DALARDSRLDA 134


>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 231

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           ++LLVD    VR+  +        F V  A+   +A E  +K   P+ ++ D  M     
Sbjct: 6   NILLVDDEPGVRESVQAYLEYADDFQVQVASHANQAWEILQKNP-PDLVISDIMMPEVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R  P    + V +L         I G  AG +++L KPF+ E L   ++ L +
Sbjct: 65  YQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGCDAYLSKPFDPEELEAIVKNLLE 124

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 125 RRKATSQ 131


>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L+V+    +R   +       F V EA +  E  E   K   P  +V+D  + G  
Sbjct: 1   MDKILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PEVVVLDIMLPGVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     ++ +  L  +      ++G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GLEVCKTLRQ--EFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117

Query: 119 QMQKSKDE 126
           +   +  E
Sbjct: 118 RRVNAVKE 125


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    +A +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLE-EKEFDLVILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
          Length = 237

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA +    E+ P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKV-NEIDPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120

Query: 122 KSKDEN 127
               + 
Sbjct: 121 DIVQKQ 126


>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 8/123 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    +    +    +  + VF A S  EA E  +    P+ +++D  M G 
Sbjct: 1   MKEKILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN--PDLILLDVMMPGK 58

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +R +    +  + +L  + + E +I G   G + ++ KPF+   L+  +   
Sbjct: 59  NGYEVCREIRDI---VNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAH 115

Query: 118 PQM 120
            + 
Sbjct: 116 LRR 118


>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 1   MPTILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPV-DLVVLDIMMPMMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +  L    +  + + G   G + +L KPF+   L   ++ L 
Sbjct: 60  GWTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + E+  + +++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|119898694|ref|YP_933907.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119671107|emb|CAL95020.1| probable two-component response regulator [Azoarcus sp. BH72]
          Length = 301

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD   I RK+   L  +    V  A S  +A E  + +   + +++D  M G+   
Sbjct: 7   RILVVDDERINRKLLSELLEEH-HDVVIAKSGEQALERVQADSAVDLILLDVVMPGMSGH 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++      DV V ++      +    G   GA  ++ KPF+   +R  +    + 
Sbjct: 66  DVLRRLKASDATKDVPVIFITSLNSVDDEEIGLDLGAADYITKPFHPGIVRLRVENHLRF 125

Query: 121 QKSKDENQFLD 131
            + +   + L 
Sbjct: 126 VRQRKILETLA 136


>gi|89094274|ref|ZP_01167216.1| chemotaxis response regulator [Oceanospirillum sp. MED92]
 gi|89081529|gb|EAR60759.1| chemotaxis response regulator [Oceanospirillum sp. MED92]
          Length = 120

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD S  +R +        G+ V EA +  EA     +    + ++ D +M  + 
Sbjct: 1   MASILVVDDSASLRNMVTFTLKQEGYQVVEAGNGQEALAKA-QGARFDLVLTDVNMPIMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R++P      +  L  E   +    G  AGA  +L+KPFN E L   ++ + 
Sbjct: 60  GITLCAELRKLPAFKFTPILVLTTESSADMKQRGKAAGATGWLVKPFNPEKLISTIKRVV 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
 gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +     G+ V+ A +  E  E   K+  P+ +++D  M
Sbjct: 1   MKNQDIKILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKN-PHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R+     D  + +L    +    +AG  AGA+ ++ KP   +     +
Sbjct: 60  PEMDGIEACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKV 119

Query: 115 RELPQMQKSKD 125
           + L +  K+++
Sbjct: 120 KALLRRLKNQE 130


>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 232

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V        GF          A         P+  ++D  + G+  
Sbjct: 6   QRILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIMLPGMDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ    TD  +  L   V+    + G   GA+ ++ KPF+   +   +R + +  
Sbjct: 66  L-EVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRS 124

Query: 122 KSK 124
            ++
Sbjct: 125 TAR 127


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKTE 123


>gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1113

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+V+ +  +R    +      ++V    +  EA E    E  P+ ++ D  M  +  
Sbjct: 844 RRILIVEDNDDLRIYLVNTL-GEDYLVQSCHNGKEALEIL-SEFKPDLVLSDIMMPEMSG 901

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E  A ++     + + V  L    D + M+ G + GA+ ++ KPF+   L+ ++  L  
Sbjct: 902 DELCAAIKGNIETSHIPVLLLTALGDEKNMLEGLKIGADDYMAKPFSISILKASINRLIT 961

Query: 120 MQ 121
            +
Sbjct: 962 NR 963


>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 234

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R+V R      G  V EA    EA      +  P+ +V+D  M     L
Sbjct: 4   RILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAAD-RPDLIVLDVGMPEFDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+   G+DV + +L    +    + G   G + ++ KPF+   L   +  + + 
Sbjct: 63  DVCREIRK---GSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRR 119


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    +A E   ++  P+ +V+D  +  +  F
Sbjct: 13  TILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDS-PDLVVLDVMLPKLDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 72  AVCRRLRAESC---VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 128


>gi|329957277|ref|ZP_08297797.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522990|gb|EGF50093.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1363

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R           F   EA +  EA E  +   + + ++ D  M  +   
Sbjct: 1114 TILIVEDNQEIRHYLSSGLAGL-FNTLEAGNGEEALEKLKDNEV-DIIITDVMMPVMDGI 1171

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++Q      + V  L  + D +  + G + GA+ ++ KPF    L   ++ + + 
Sbjct: 1172 KLCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFAITVLTSKIQNMMRT 1231

Query: 121  QK 122
            ++
Sbjct: 1232 RR 1233


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    VR+V        G+ V  A    EA     +E  P+ +V+D  +  +  F
Sbjct: 25  TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQE-QPDLVVLDVMLPKLDGF 83

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 84  AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 223

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    +RK+    F   G+ +  A    EA    EK+  P+ +++D +M    
Sbjct: 1   MKKILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVRQAEKQ--PDIILLDINMPEIN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    +R         + +L   V+    I+G +AG + ++ KPF+   L   +    
Sbjct: 59  GLDVCRKIRS---YVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHL 115

Query: 119 QMQ 121
           + +
Sbjct: 116 RRE 118


>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       +A     ++  PN +++D  +  + 
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSF-QQRKPNLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R+  +    + G  VFEA    +A     +E   + +++D  M  +  
Sbjct: 4   NNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDAL-MLLQEQEIHLILMDIMMPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
             A  +      D+ +  L  + +    I G   GA+ ++ KPFN   L   ++   +  
Sbjct: 63  IKATFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRY 121

Query: 121 ------QKSKDENQ 128
                 +++ +E Q
Sbjct: 122 VRFASYKRNTEELQ 135


>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
           [Bacillus anthracis CI]
 gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 841

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 620 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 678

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 679 DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKR 735

Query: 121 QK 122
            +
Sbjct: 736 YQ 737


>gi|171914581|ref|ZP_02930051.1| putative two component system histidine kinase/response regulator
           fusion protein [Verrucomicrobium spinosum DSM 4136]
          Length = 380

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++  +L    GF V  A+   EA   C    +P+ +++D  M  +  F 
Sbjct: 14  VLVVDDQVRNLQMVTNLLTHRGFEVITASGGREALN-CLATKIPDLILLDVIMPEMDGFE 72

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++     + V V +L    D   ++ G   G   ++ KPFN+  L   +    Q+ 
Sbjct: 73  VCRQIKSNRATSHVPVVFLSGSADQSSIVRGFETGGVDYIAKPFNKAELLARVLTHVQLV 132

Query: 122 KSKDENQ 128
           +++  ++
Sbjct: 133 QAQRRHE 139


>gi|119493875|ref|ZP_01624440.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119452387|gb|EAW33578.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 335

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           S+L+VD +    +    +  + G+ V +A +   A    + E  P+ +++D  M  +   
Sbjct: 12  SILIVDDTPNNLRFLSSMLLEHGYEVRKAINGQMALRSAQAEP-PDLILLDVRMPDMSGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
           E    +++ P   ++ V +L      +  +     GA  ++ KPF  + +   ++     
Sbjct: 71  EVCHALKEKPETREIPVIFLSALDHEKDKVIAFEMGAVDYVTKPFQFQEVLSRVKTHITI 130

Query: 119 --QMQKSKDENQFLDA 132
             Q +    +   L+ 
Sbjct: 131 QHQRKLLMQQKARLEE 146


>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 241

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  +        G     A+   EA +   + L P+ +++D  + G+   I
Sbjct: 14  VLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLF-RLLRPDLVLLDIHLPGMDG-I 71

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R +   +   V  +    D    +   R GA+ +++KPFN   +   +R + +  ++
Sbjct: 72  DVLRAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQA 131

Query: 124 KD 125
           + 
Sbjct: 132 RK 133


>gi|303241292|ref|ZP_07327797.1| response regulator receiver modulated diguanylate cyclase
           [Acetivibrio cellulolyticus CD2]
 gi|302591131|gb|EFL60874.1| response regulator receiver modulated diguanylate cyclase
           [Acetivibrio cellulolyticus CD2]
          Length = 310

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D +  + K+   + +   + V  A++  +  +   +E  P+ +++D  M G+  
Sbjct: 4   KKILIIDDTEFMTKLITDILSSADYDVVIASNGLQGIQKVREEK-PDLVILDVVMPGMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R       + +  L  + + +  +AG   GA+ +++KPFN   L   +R   +
Sbjct: 63  FEVCKILRDDESNNLMPIIMLTAQDNEDDKLAGLEIGADDYIIKPFNGRELVSRVRNTLK 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A+   EA            +V+D  M  + 
Sbjct: 1   MK-ILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + + +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  GL-EVVKIVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            ++  ++Q
Sbjct: 119 AENSVQDQ 126


>gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--- 58
             +L+VD    +++V R      G+ VF A    EA E  +    P+ +++D  M G   
Sbjct: 6   KRILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLH-QPDLILLDLCMPGELD 64

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    VR    G    +  L    +  + +     GA+ +L KPF  E L   +R   
Sbjct: 65  GLDVCVEVRHR--GQKPPIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACL 122

Query: 119 QMQKSKDENQFLDAI 133
           +  +S +E + +  +
Sbjct: 123 RRSQS-NEGEEIQQV 136


>gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +           G+ V++A +  EA +          +++D  M  + 
Sbjct: 1   MYNILICDDEKDIVSAIEIYLKTAGYSVYKAYNGMEAVDMVNSND-IQLVLMDVMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  +     ++V V  L  + +    + G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GITAMAKIRES-SNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRR 118


>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALD-AGLQGGIDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +A S  EA E  +++   + +++D  M  + 
Sbjct: 1   MIKILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKN-FDIILLDVMMPNMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +RQ+   ++V +  L        M+ G   GA+ ++ KPF+ + L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+ D    +    +      G+ VFEA +  EA E   KE   + +++D  M  + 
Sbjct: 1   MYSILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVL-KEQDIHLVLMDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A V+     ++V V  L  + +    + G   GA+ ++ KPFN   ++  ++   + 
Sbjct: 60  GIAAMVKIRE-TSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRR 118


>gi|198275803|ref|ZP_03208334.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135]
 gi|198271432|gb|EDY95702.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135]
          Length = 1393

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
            S+L+V+    +R        + G  F V   ++  EA +      +P+ ++ D  M    
Sbjct: 1133 SILIVEDEDEIRNYL---LTELGSHFRVLSCSNGKEALDLIM-HHMPDLVLSDIMMPEVN 1188

Query: 59   VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +  +  ++Q      + V  L  +   +  I G   GA++++ KPFN + L   +  L 
Sbjct: 1189 GITLLRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENLI 1248

Query: 119  QMQKSKDEN 127
            + ++    N
Sbjct: 1249 KNREILRNN 1257


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +V+    ++++ ++     GF V    +  +  E+     +P+  ++D  + G+    
Sbjct: 6   IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEY-SSGKVPDLFILDIMLPGIDGLE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++Q      + +  L  + +    + G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  VCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFRRV 124

Query: 122 KSKDE 126
            + +E
Sbjct: 125 NTTNE 129


>gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5]
 gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB5]
          Length = 457

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++     +   F V  A++  +A E C +    + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAEC-DIVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    L       +    +  EA     +      +V +       L 
Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEANPSEALFHAAEGNYDLLIVSLGLEDFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +  + +    +  G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLVD    + ++  +     G+          A +  E E   +++++D  +  +
Sbjct: 1   MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEH-FDFILLDIMLPQL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +
Sbjct: 60  DGIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILR 119

Query: 120 MQK 122
             +
Sbjct: 120 RTE 122


>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
           [Arthrospira platensis str. Paraca]
          Length = 222

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD     R          G+ V  AT+  EA +  EK   P+ +V D +M  +  F
Sbjct: 4   TLLVVDDDLGTRLSISDYLEMSGYFVISATNGQEALQLVEKH-QPHLIVTDIAMPEMDGF 62

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P    + V +L      E+ I G + G +++L KPF  E L   +R L + 
Sbjct: 63  ELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLLER 122

Query: 121 QKSKD 125
            +  +
Sbjct: 123 SQLIE 127


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKTE 123


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VL 60
            S+++V+    + ++        G+ V  A S  EA +  E E   ++ ++D  + G + 
Sbjct: 4   KSIMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLE-EKDTDFFIVDIMLPGSMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  I  ++      +  V  L  + D    +AG   G++ ++ KPFN   L   ++ + 
Sbjct: 63  GFDLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIF 122

Query: 119 QMQKSKDENQ 128
           + Q +  + +
Sbjct: 123 RRQAASAQMK 132


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    + ++        GF    A +   A      E  P+ +++D  +    
Sbjct: 1   MSHVLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAA-SEHPPHLVLLDLMLPDIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R   L  DV V  L  + +    + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GTEVCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 242

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +        G+ V  A      R+    E   + +++D  + G  
Sbjct: 1   MTHVLIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAA-DLVILDLMLPGED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 H+R     T + +  L         + G   GA+ +L KPF+   L   +R + 
Sbjct: 60  GLSLCRHLRA---TTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
 gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       +A     ++  PN +V+D  +  + 
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASF-QQRKPNLMVLDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +  + K E + 
Sbjct: 117 RRLERKAEPEQ 127


>gi|158335457|ref|YP_001516629.1| sensory box/response regulator [Acaryochloris marina MBIC11017]
 gi|158305698|gb|ABW27315.1| sensory box/response regulator, putative [Acaryochloris marina
           MBIC11017]
          Length = 572

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + + +    G+   EA +     +  ++   P+ +V D  M  + 
Sbjct: 1   MPKILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSP-PDLIVCDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R  P    + + +L  + D   +  G   GA+ ++ KPF    L  A+    
Sbjct: 60  GFDVLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARL 119

Query: 119 QMQKSKDEN 127
           + Q    + 
Sbjct: 120 KKQALVTQQ 128


>gi|148654863|ref|YP_001275068.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus sp. RS-1]
 gi|148566973|gb|ABQ89118.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus sp. RS-1]
          Length = 331

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R+         G+    A +  EA      E  P+ +++D +M  +  F
Sbjct: 4   KILIADDNQAMREAIIRFVEAEGYTALAARNGREALALAL-EKQPDLVLLDVTMPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + +  L +    +    G  AGA+ FL KPF+   LR  ++   + 
Sbjct: 63  EVCRRLKNDPRTALIPITMLTVLDSPDHRRYGIEAGADDFLTKPFDERLLRARIQSQLRT 122

Query: 121 QKSKDENQFLDAI 133
           ++  D+ +  +++
Sbjct: 123 KRLTDQLERTESV 135


>gi|299148418|ref|ZP_07041480.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298513179|gb|EFI37066.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1511

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F+   + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALK-YLPDIIISDVMMPEKDGIEM 1295

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355

Query: 122  KSKD 125
            K + 
Sbjct: 1356 KLQS 1359


>gi|237717953|ref|ZP_04548434.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229452755|gb|EEO58546.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1511

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F+   + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALK-YLPDIIISDVMMPEKDGIEM 1295

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355

Query: 122  KSKD 125
            K + 
Sbjct: 1356 KLQS 1359


>gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD +  +R+V   L +  G+ V EA    EA +        +  ++D  M     
Sbjct: 4   NKILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV--SDDIDLYILDIMMPIING 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R+    ++  + +L  +        G  +G + +L KPF+   L   ++ L +
Sbjct: 62  YQACVEIRKK---SNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           LLV+    + ++    F    F V       EA     +E +P+ +++D  +E    +E 
Sbjct: 7   LLVEDDAALAELLIWHFKREDFDVSHTVDGEEAL-LMAQETVPDIVLLDWMVESLSGIEV 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+M    +V +  L    + E  + G   GA+ ++ KPF+   L   +  + +  +
Sbjct: 66  CRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVR 125

Query: 123 SKDENQFL 130
                + L
Sbjct: 126 PALAGETL 133


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G    +A +  EA    E E   + +++D  M  +   
Sbjct: 4   NILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLE-EQAFDLIILDIMMPEMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + +  L  + +    I G  +GA+ ++ KPFN   L   ++   +  K
Sbjct: 63  EACMKIREE-QHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYK 121


>gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 225

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +RK+ +      G++V EA    +A +   ++   + +++D  M      
Sbjct: 5   KILVVDDESRMRKLVKDFLVKDGYLVVEAEDGQQALDIFYEDKDISLIILDVMMPKRDGW 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     + V +  L  + +    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  EVCKEIR---TNSKVPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRR 121

Query: 121 QKSKDENQFLD 131
                 NQ ++
Sbjct: 122 TNQAANNQIME 132


>gi|225181287|ref|ZP_03734732.1| response regulator receiver modulated diguanylate cyclase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168067|gb|EEG76873.1| response regulator receiver modulated diguanylate cyclase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 305

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  + ++D S  + K+   L    G  V   T   +A +       P+ +V+D  M    
Sbjct: 1   MPKITVIDDSITIVKMLTDLLTQDGHQVCGMTEAADALDKVV-GFSPDLIVLDVIMPDVN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R     + + +  L    +    +AG  AGA+ +++KPF  + +   +R   
Sbjct: 60  GYDLCRMLRNDTRTSHLPIMMLTSRGEVTDKVAGLEAGADDYIVKPFEPQEVLARIRTHL 119

Query: 119 QMQKSKD 125
           +  K   
Sbjct: 120 RRAKQHK 126


>gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|300867489|ref|ZP_07112140.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334483|emb|CBN57308.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 427

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD +    +    L  + G+ V +A +   A    +  +LP+ +++D +M 
Sbjct: 1   MTKTADILIVDDTPDNIRFLSSLLVEQGYNVRKALNGKMALTAVKA-VLPDLILLDINMP 59

Query: 58  GV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+   E   H++     + V V +L         +   + G   ++ KPF  E +   ++
Sbjct: 60  GMNGYEVCEHLKNDAKTSAVPVIFLSALDGVVDKVKAFQIGGVDYITKPFQLEEILARIQ 119

Query: 116 ELPQMQKSKDENQFLDA 132
              +++  + + Q  +A
Sbjct: 120 SQLKIKTLQTKLQVQNA 136


>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
 gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
          Length = 230

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLV+     R+V  +     G+ V +A    EA +    E LP+ +V+D  M     LE
Sbjct: 9   VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDE-LPDLIVLDWMMPKVSGLE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    V +  L    +    + G   GA+ +++KP++   L   +R   +  
Sbjct: 68  VCRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRA 127

Query: 122 K 122
           +
Sbjct: 128 R 128


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKTE 123


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKAE 123


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  +         V  A    EA E  +K    + +++D  +  +  
Sbjct: 3   KKVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEY-DIVLLDVMLPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R     +++ +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +  
Sbjct: 62  FEVCQRIRE-FSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRS 120

Query: 122 KSKD 125
             + 
Sbjct: 121 SKRA 124


>gi|152964302|ref|YP_001360086.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
 gi|151358819|gb|ABS01822.1| response regulator receiver protein [Kineococcus radiotolerans
           SRS30216]
          Length = 806

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            + L+VD   ++  +        G  V  A+   EA +    E +P+ +V D +M G+  
Sbjct: 17  RTALVVDDDEMISHLVSAGLRAAGMTVVTASDGREALQRL-AEAVPDVVVSDVNMPGMDG 75

Query: 62  FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R  P    V + +L    +    +A  R GA+ ++ KPF+   L   +     
Sbjct: 76  FALVSRLRAEPATRAVPLVFLTSRAEASDALAALRLGADDYVRKPFDLTELVARVVAKLD 135

Query: 120 M 120
            
Sbjct: 136 R 136


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L VD    VR+  R   +  G+ V  A    EA E   ++  P+ LV+D  M  +   
Sbjct: 2   RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARD-RPDALVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ +  L       + +AG  AGA+ +L KPF  E L   +R L +  K
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120

Query: 123 SKDENQ 128
             D  +
Sbjct: 121 PDDAAE 126


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA      E     +++D  M G+ 
Sbjct: 1   MK-ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  V+++   + + +  L  + +    I G  +GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  G-IEVVKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 TE 120


>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 237

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +  + +      G+ V  A    EA +  E+E  P+ +++D  +     
Sbjct: 3   KTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEE-QPDLMLLDIMLPKRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+        +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 249

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R++        G+ V  A     A E          EL  + LV+D  +
Sbjct: 19  RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  + +  L  +      + G   GA+ +L KPF+   +    
Sbjct: 79  PQINGLDICRLLRHQ--GNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARC 136

Query: 115 RELPQMQK 122
           R L + Q+
Sbjct: 137 RALLRRQR 144


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 234

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      GF V  A+   EA +   +   P+  ++D  M  +  
Sbjct: 8   TRVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIA-RSFHPDAFILDVMMPRMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    +    G D  V +L  +   +  I G   GA+ ++ KPF+ E +   ++ + + 
Sbjct: 67  FTLLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRR 125


>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
 gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
          Length = 238

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDIMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGIREK---KATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
 gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
          Length = 231

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    + ++     +  GF    + S   A E   ++ LP+ +++D  + G+   
Sbjct: 4   SILIVEDEESILELIAINLHQAGFNPIRSLSAEFA-EKIIQKNLPDLIILDWMLPGMDGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + +  L  + + +  + G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 63  EFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRR 122


>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
 gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ +  V  +    F   G+      S  E  +   KE   + +++D  +  + 
Sbjct: 1   MK-ILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESW-DLVIVDWMLPVMD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++   + V +  L  +      + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 59  GVTLCRKIREL---STVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVT 115

Query: 119 QMQKSKDENQ 128
           +  ++    Q
Sbjct: 116 RRYQADSSKQ 125


>gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis
            DSM 17361]
 gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis
            DSM 17361]
          Length = 1372

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL+V+ +  +R+       D  + V EA++  EA E  + E   + ++ D  M  +  F
Sbjct: 1124 TLLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAET-ISLVLTDVMMPEMDGF 1181

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++      + V  L  +V+  + + G   GA+ ++ KPF+   L+  +R   ++
Sbjct: 1182 ELCKRIKRHIQTCHIPVIILSAKVETREQLDGLLIGADDYITKPFSISILKAKIRNTLRI 1241

Query: 121  QKS 123
            +++
Sbjct: 1242 REA 1244


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A     A +  E E   + +++D  M  +   
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLE-EKEFDLIILDIMMPNMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 68  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 124


>gi|298491243|ref|YP_003721420.1| GAF sensor-containing adenylate/guanylate cyclase ['Nostoc azollae'
           0708]
 gi|298233161|gb|ADI64297.1| adenylate/guanylate cyclase with GAF sensor(s) ['Nostoc azollae'
           0708]
          Length = 1180

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            S+L+VD +  +R     +    G+ +  A +  E      + + P+ ++ D  M     
Sbjct: 824 QSVLVVDDNPDMRSYVAEILAHSGYQIITARNGYEGYNIA-QGVRPDLIITDLMMPLLTG 882

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E I  +R       + +  L  +VD E  I G   GA+++L KPFN   L   +R L  
Sbjct: 883 IEMIQMIRSQDQVRGIPIILLTAKVDEETRIEGIEHGADAYLGKPFNDRELLAEVRNLLA 942

Query: 120 MQKSKDENQFLD 131
           ++++  E + L+
Sbjct: 943 LKEN--EKRVLE 952



 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       +    F    + V  A S   A E   +E     ++ D+ M  +   
Sbjct: 10  KILVVDDEPDNLDLLYRSFYRE-YQVLRANSGPAALELLAQEGDIAVIISDQRMPMMSGT 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP--- 118
                      D+    L    D E ++    +G    ++ KP+  E L+  +R+     
Sbjct: 69  EFLSLTATQYPDIIRIILTGYTDVEDLVEAINSGKVFKYVTKPWEAEELKAVVRQALDTH 128

Query: 119 --------QMQKSKDENQFLDAI 133
                   ++ ++      L+A+
Sbjct: 129 NVLKARTRELTRTLRRESLLNAV 151


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDESM 56
            +L+V+   ++R +      + G+ V  A+    A E        E E L + LV+D  +
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                L+    +R    G  + +  L  +V     + G   GA+ +L KPF+   L    
Sbjct: 80  PSVNGLDICRLIR--YQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQ 121
           R L + Q
Sbjct: 138 RALLRRQ 144


>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +R +   +     ++V  A +   A +  +    P+ +V+D  +    
Sbjct: 1   MKKILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDA-FGPDLVVLDLMLPDCS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +        V V  L  + +    + G   GA  ++ KPF+   L   ++ + 
Sbjct: 60  GYDLCKEI---TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVIL 116

Query: 119 QMQKSKDE 126
           +  +SK+E
Sbjct: 117 RRNESKEE 124


>gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134]
 gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134]
          Length = 232

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ ++     G+ V  A +  EA     K  LP  +++D  M  +   
Sbjct: 8   KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAI-KVAKTFLPQLILMDIMMPKMDGV 66

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+M    D ++ YL   V+    +A    GA+ ++ KP     L   +  L + 
Sbjct: 67  EAGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRR 126

Query: 121 -QKSKDENQFLDAI 133
            QK   +N+  D I
Sbjct: 127 EQKKHQKNEKKDKI 140


>gi|148264719|ref|YP_001231425.1| two component, sigma-54 specific, Fis family transcriptional
           regulator [Geobacter uraniireducens Rf4]
 gi|146398219|gb|ABQ26852.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter uraniireducens Rf4]
          Length = 457

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R+    L    G+ V +A +   A +  E +   + +V D SM G+  
Sbjct: 3   TKILVVDDEQSMREFLAILLEREGYYVAQAENAEVALKLLESDTY-DLVVSDVSMPGLNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R      +  V  +      E+ +   + GA  ++ KPF  E ++  ++   +  
Sbjct: 62  MALLARIKTTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEKS 121

Query: 122 KSKDENQFLD 131
             + EN+ L 
Sbjct: 122 SLQKENRRLK 131


>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
 gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 241

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G+ + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    + ++ R      G  V EA     ARE        +  ++D  + GV 
Sbjct: 1   MPNILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQL---PRADLAILDWMLPGVS 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  + +  L    + E  + G   G + +++KPF+   +   +R L + 
Sbjct: 58  GVDLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRR 117

Query: 121 QKSKDE 126
              ++E
Sbjct: 118 VGVQEE 123


>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      GF V   T+     +  +KE  PN +++D  + G+  
Sbjct: 3   KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PNLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             + LV+    +  + +    D G+ +        A E  EK  + + +++D  + G   
Sbjct: 5   KKIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKH-VWDAVILDLMLPGVDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFR 121

Query: 120 MQKSKDENQFLDA 132
            Q++  +N  ++A
Sbjct: 122 RQEAMSQNLRMEA 134


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 121 RRIEVHDE 128


>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +++VD    +R++ R   +  GF   EA +  EA +  E +   +  V+D  M G+
Sbjct: 1   MKSKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQ-YIDLAVVDIMMPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   V QM    +  V  L  +   +  + G   G + ++ KPF+ + L   ++ + +
Sbjct: 60  DGF-ELVEQMRQYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILK 118

Query: 120 MQKSKDEN 127
                  N
Sbjct: 119 RYSINSSN 126


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R++ R +    GF V EA     A +  E     + +++D  M  + 
Sbjct: 26  MAVILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTH-IDLIILDVMMPKMD 84

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR     TD+ +  L  + +    + G  +GA+ +L+KPF    L   ++ L 
Sbjct: 85  GFEVSEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALL 141

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 142 KRYRITAE 149


>gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D    +R+V        G           A +   +   P+ +V+D  M  +    
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGR-RAPDLVVLDIGMPEMDGLE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +   +DV V +L    +    I G   G + ++ KPF+   L   +  + +  
Sbjct: 64  VCRRLRHI---SDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRA 120

Query: 122 K 122
           +
Sbjct: 121 R 121


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 5/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +        G+ V          E   K   P+ +V+D  +  +  
Sbjct: 4   KKILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHL-KPFRPDLIVLDLMLPKMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D    I+G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 63  IQVCRELRRQ--NNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFR 120

Query: 120 MQKS 123
             ++
Sbjct: 121 RVQA 124


>gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides
           fragilis 638R]
          Length = 224

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+    +         +FG  V  A       EF  +E   + L++D  M  + 
Sbjct: 1   MAKILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQE-AFDLLILDIIMPKMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQ        V  L      E ++ G  +GA+ +L+KPF+ + L   ++ + 
Sbjct: 60  GLELCRLYRQQYGYL-TPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAIL 118

Query: 119 QMQKSKDENQF 129
           +  +     Q 
Sbjct: 119 RRGREDSVQQL 129


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +      L    GF     T   EA    +     + +++D  + G+ 
Sbjct: 1   MTHVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
 gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
          Length = 1390

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D +  +R     L    G+ V   +   +A E    E LP+ +V D  M G   L
Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAE-LPDLVVSDVMMPGLDGL 696

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +A +R       + V  L      E  I G  AGA+ +L+KPF    L   +     +
Sbjct: 697 ELVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHANVAL 756

Query: 121 QKSKDENQF 129
            + ++ +  
Sbjct: 757 ARLRNHHSR 765


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +  +        G+ V  A    +A E    E  P+ +++D  +     +
Sbjct: 5   KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSEN-PDLILLDLMLPKKDGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR      ++ +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  EVCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120

Query: 121 QKSKDEN 127
              + E 
Sbjct: 121 VTKQQEE 127


>gi|325579099|ref|ZP_08149055.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159334|gb|EGC71468.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 235

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  +   +    GF +  A +  EA +          +++D  M    
Sbjct: 1   MSKILLVDDDIELTDLLAEVLRLTGFEIEVANNGQEALDKLNASHQ--LVLLDVMMPVLN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ+   +++ V  L    +    + G   GA+ +L KPFN   L   ++ + 
Sbjct: 59  GIETLKKIRQI---SNIPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAIL 115

Query: 119 QMQKSKDENQFLDAI 133
           +   S + +   D I
Sbjct: 116 RRVGSSELDSQSDQI 130


>gi|317478303|ref|ZP_07937467.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316905462|gb|EFV27252.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1342

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +        +   ++V  A +  EA    + E   N +V D  M  +  F
Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILD-ENFVNLIVSDVVMPLMDGF 1154

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + +  L  + + +  + G   GA++++ KPF+ E L  A+  L + 
Sbjct: 1155 ELCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLIKN 1214

Query: 121  QKSKDE 126
            +++  +
Sbjct: 1215 RETLRQ 1220


>gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 235

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    VR++ R L    G  V EA +  EA     K   P+ +V+D +M  + 
Sbjct: 3   MAEVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLL-KSATPDLIVLDVTMPELD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R   L  +V V  L         + G ++GA+ ++ KPF R+ L   +  L + 
Sbjct: 62  GWQTLERIRDLT-EVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLRR 120


>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
           [Bacteroides xylanisolvens XB1A]
          Length = 225

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    +         +FG  V          +  + E   + L++D  M    
Sbjct: 2   MAKILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEP-FDLLILDIIMPKIN 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQ        V  L      E ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 61  GLELCRLYRQTFGYQS-PVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALL 119

Query: 119 QMQK 122
           +  K
Sbjct: 120 RRNK 123


>gi|255691123|ref|ZP_05414798.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623476|gb|EEX46347.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1523

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R   R +F    + V EA    E      K  +P+ ++ D  M     +E 
Sbjct: 1240 LLVEDNQELRVFLRSIFAS-NYRVVEAADGMEGWSKALK-YVPDIIISDVMMPEKDGIEM 1297

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1298 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLSQRK 1357

Query: 122  KSKD 125
            K + 
Sbjct: 1358 KLQS 1361


>gi|160891619|ref|ZP_02072622.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492]
 gi|156859026|gb|EDO52457.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492]
          Length = 1342

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +        +   ++V  A +  EA    + E   N +V D  M  +  F
Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILD-ENFVNLIVSDVVMPLMDGF 1154

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + +  L  + + +  + G   GA++++ KPF+ E L  A+  L + 
Sbjct: 1155 ELCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLIKN 1214

Query: 121  QKSKDE 126
            +++  +
Sbjct: 1215 RETLRQ 1220


>gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    + ++     +  G+   +A S  EA E   ++   + +++D  M  + 
Sbjct: 1   MIKILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELV-QQKEFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        MI G   GA+ ++ KPF+ + L   +  + 
Sbjct: 60  GWETCKQIRQL---SNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVL 116

Query: 119 QMQKSK 124
           +  K +
Sbjct: 117 RRTKKE 122


>gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC
           33406]
          Length = 228

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    + ++  +     G+ V  A +  +A E   K+ LP  +++D  M 
Sbjct: 1   MKANSRILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEA-KDFLPQLILMDIMMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +        +R++P   + ++ +L    +    IA   AGA+ F+ KP     L   + 
Sbjct: 60  KMDGVESCRKIREIPKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVS 119

Query: 116 ELPQM 120
              + 
Sbjct: 120 AFFRR 124


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +++ +    +  +  +     G+    A    EA     KE  P+ LV D  M     +E
Sbjct: 5   IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEAL-MMIKERQPDLLVCDWMMPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      ++ +  L    +    I G   GA+ +++KPF+       +R + +  
Sbjct: 64  VCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|300864661|ref|ZP_07109518.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
 gi|300337322|emb|CBN54666.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
          Length = 121

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++++VD S  +R++   L    G  V  A+   EA E  +    P+ +V+D  M  + 
Sbjct: 1   MSTVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKANC-PDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   ++ V     + +      G + GA++++ KPF+ + L   +++L 
Sbjct: 60  GYEVCRRLKSDPKTQNLPVVMCSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+ V  A +  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A VR++   + + V  L  + D    I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GL-AVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SQ 120


>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
 gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 257

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++      + GF V          +        + +V+D  + G    
Sbjct: 8   RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPM-MDRALHREHYDLIVLDLMLPGEDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + V  L  + D    I G   GA+ ++ KPFN   L   ++ + + Q
Sbjct: 67  SICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQ 125


>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
 gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 244

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R + R      GF V  A     A          + +V+D  + G    
Sbjct: 11  RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSK-ALNRILTRETVDLIVLDLMLPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  +VD    I G   GA+ +L KPFN   L   +  + + +
Sbjct: 70  SICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRR 128


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|156743120|ref|YP_001433249.1| adenylate/guanylate cyclase with GAF and PAS/PAC sensors
           [Roseiflexus castenholzii DSM 13941]
 gi|156234448|gb|ABU59231.1| adenylate/guanylate cyclase with GAF and PAS/PAC sensors
           [Roseiflexus castenholzii DSM 13941]
          Length = 971

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L VD    VR++ + L  + G+ V  A++  EA  + E  + P+ +++D S+ G+    
Sbjct: 7   ILAVDDDASVRRMLQILLTNAGYRVSVASTGEEALAYLEL-VTPDLVLMDVSLPGLSGQH 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  V+  P    + V  +    D E  +A   AGA+ FL+KP +   L   +R + ++Q
Sbjct: 66  VMERVKSDPDRPFIPVILITGYGDPEAKVAALDAGADDFLVKPVDLTELLARVRAMLRLQ 125

Query: 122 KSKDENQ 128
           +S+   +
Sbjct: 126 RSQRSLR 132


>gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009]
 gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1]
 gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
 gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris TIE-1]
          Length = 457

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  +A E C++    + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAEC-DIVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    L +     V   T+  EA            +V +       L 
Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAADGNYDLLIVSLGLENFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +  E +    +  G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAI-AEAENNARLLRGLEIGVNDYLLRPVDKNELMA 266


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    +R   R    D G  V EA S     E        + +++D  +  +  F
Sbjct: 20  RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGA-DVVLVDLMLPDIDGF 78

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +DV +  +    D   ++AG  AGA+ ++ KPF  + L   +R L + 
Sbjct: 79  ECCRRLR---RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR 135

Query: 121 QKS 123
            +S
Sbjct: 136 SRS 138


>gi|329956909|ref|ZP_08297477.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
 gi|328523666|gb|EGF50758.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
          Length = 1352

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R+  R       + V   ++   A  +  KE  P+ ++ D  M  +  
Sbjct: 1091 QKILVVEDNDELREYLRRTL-AENYHVQVCSNGKSAL-YIVKEYFPDLIISDIMMPEMRG 1148

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V+     + + +  L      + +I G + GA+ +++KPFN   LR  +  L  
Sbjct: 1149 DELCQIVKNDIDTSHIPIILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLA 1208

Query: 120  MQKSKD 125
             +    
Sbjct: 1209 NRALLR 1214


>gi|224538289|ref|ZP_03678828.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520074|gb|EEF89179.1| hypothetical protein BACCELL_03180 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1438

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R     + +   + VFEAT+  E  E    + +P++++ D  M  +   
Sbjct: 1176 SVLVVEDNTELRNFLNDILSGT-YKVFEATNGQEGLEQAL-QYVPDFIISDVMMPVMDGL 1233

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++       + +  L  +   +  I+G   G + ++ KPF+   L+  ++ L   
Sbjct: 1234 DMVKAIKAHRDVCHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSSTYLKTRIKSLLHQ 1293

Query: 121  QKSKDEN 127
            +K   E 
Sbjct: 1294 RKQLQEL 1300


>gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+++    + ++        G     A       E   K   P+ +++D  + G+ 
Sbjct: 1   MHTILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNP-PDLILLDLMLPGMA 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++       + V  L  + +    + G   GA+ +++KPF+   L   ++ L 
Sbjct: 60  GTEICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD  + +R++ +      GF V  A     A       L P+ +++D  +      E
Sbjct: 6   ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQART-LRPDLIILDLMLPALDGFE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +D ++  L  +V+    + G   GA+ +L+KPF+   L   +R + +  
Sbjct: 65  VCRQLR---TFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRP 121

Query: 122 KS 123
           + 
Sbjct: 122 RQ 123


>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 239

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFHVRSVANGEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R   +   + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    +     +L    G+ V  A    +A    +     + +++D  + G  
Sbjct: 1   MTRILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGA-DLVLLDLMLPGAS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRAKSK---VPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVM 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      +      +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLE-EKEFDLIILDIMMPNMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119


>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK+ +      G+ V EA    E  E   +    + +++D  M  + 
Sbjct: 1   MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTY-DIVILDIMMPKID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D    + G     + +++KPFN + L   ++ L 
Sbjct: 60  GWSVCRKIREE---SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 227

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R + +    + G+ + EA++  EA      E   + +++D  M  +   
Sbjct: 4   NILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMI-NENDFDLVILDVMMPILDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + + +L  + +    I G   GA+ ++ KPF    L   ++   +  K
Sbjct: 63  SACIKIRENY-TMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYK 121


>gi|150004693|ref|YP_001299437.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|160892059|ref|ZP_02073062.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492]
 gi|149933117|gb|ABR39815.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|156858537|gb|EDO51968.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492]
          Length = 1356

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +R+   +   D  + + +A    E      K   PN +V D  M  +    
Sbjct: 1096 LLVVEDNRDIREYIANELQDT-YRILQADDGKEGLALALK-YTPNIIVSDIMMPNMNGIA 1153

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  +   +    G  +GA+S+L KPF+ + LR  +  L ++Q
Sbjct: 1154 LCKAIKSDMNTSHIPVILLTAKDSIQDKEEGYNSGADSYLTKPFSAKLLRSRINNLLEIQ 1213

Query: 122  KSKDE 126
            K   +
Sbjct: 1214 KRLAK 1218


>gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 243

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD  H +R +        G  V  A    E           + +V+D  M G     
Sbjct: 7   ILVVDDDHEIRDLLARFLAKHGLHVSTARDGAE-MTKLLDAHGIDLVVLDLMMPGEDGLS 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G  + +  L    +    I G   GA+ +L KPFN   L   ++ + +   +
Sbjct: 66  LTRRLRAQGCTLPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRAPA 125

Query: 124 K 124
           +
Sbjct: 126 E 126


>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  + +      G+ V  +    +A    + E   + +++D  +  +  F 
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSEN-FDMVLLDVMLPKIDGFS 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               VR+    +DV +  +  + D    + G   GA+ ++ KPF    L   +R   +  
Sbjct: 65  VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121

Query: 121 -QKSKDENQFLDA 132
            Q S  + + L A
Sbjct: 122 AQSSTQDGKVLKA 134


>gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
 gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
          Length = 234

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VRQ     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 118

Query: 120 MQKSKDENQ 128
            ++   +++
Sbjct: 119 RREITQKSK 127


>gi|322417618|ref|YP_004196841.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320124005|gb|ADW11565.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 455

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD + I  ++   +     + V    S   A +      LP+ +++D  M G+ 
Sbjct: 12  MPSILIVDDNQINLQLLCGMLAGMSWRVRPVASGIMALKAAMA-KLPDLILLDAMMPGMD 70

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    H++Q P    + +  +    D E  +   R GA+ FL KP +R  L+   + L 
Sbjct: 71  GFEVCRHLKQTPATEHIPIVMITALTDQESRMKALRCGADDFLSKPVDRSELQVRTKNLL 130

Query: 119 QMQKSKDENQ 128
           +++K  D  +
Sbjct: 131 RVKKYGDLLR 140


>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
 gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
           [Synechococcus sp. WH 5701]
          Length = 252

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      +EL+P+ ++ D  M      
Sbjct: 27  RLLLVDDEPGLRTAVQAYLEDEGFDVTTANDGEEGWTAA-QELIPDLVISDVMMPRLDGY 85

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             +  +R         V +L  +      I G +AG + ++ KPF+ + L
Sbjct: 86  GLLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 135


>gi|301057951|ref|ZP_07199008.1| putative fused DNA-binding response regulator in two-component
           regulatory system with ZraS: response regulator/sigma54
           interaction protein [delta proteobacterium NaphS2]
 gi|300447918|gb|EFK11626.1| putative fused DNA-binding response regulator in two-component
           regulatory system with ZraS: response regulator/sigma54
           interaction protein [delta proteobacterium NaphS2]
          Length = 453

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + +    + +D GF V  A S  EA +  E E +P+ +++D  M G+  
Sbjct: 3   KTILVVDDETSILQSLEGILSDEGFEVATAESGLEALKKVE-ETMPDLVLLDIWMSGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +   L   + V  +    + E  +   + GA  ++ KP + E L  ++       
Sbjct: 62  IETLEKIKDLYPRLQVIMMSGHGNIETAVKATKVGAYDYIEKPLSLEKLLLSINNALAHS 121

Query: 122 KSKDENQFLDA 132
           +  +E  FL  
Sbjct: 122 RLTEEVHFLKE 132


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKTE 122


>gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 227

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +V         F V++AT+   A    E  + P+ +V+D  +    
Sbjct: 1   MK-ILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFES-INPDLVVLDLMLPDTD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   +++ +  L  + D E ++ G + GA+ +++KPF+ + L   ++ + + 
Sbjct: 59  GLTVC-RKIRESSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRR 117

Query: 121 QK 122
            +
Sbjct: 118 SE 119


>gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
 gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia
           baltica ATCC 49814]
          Length = 459

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     RK+         F V  A    +A +       P+ +++D  M  +  F
Sbjct: 4   RVLVVDDIEANRKLLCAKLAHEYFQVTTAVDGLDAIDKAIA-TEPDIILLDVMMPRMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + +  +    + E  + G RAGA+ FL KP N   L   +R L + 
Sbjct: 63  EACRELKFDPRTEHIPIVMVTALNEREDRLKGLRAGADDFLTKPINDLQLLSRVRALSKY 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KLVADELRKREA 134



 Score = 77.2 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE---AREFCEKELLPNYLVIDESMEGV 59
            +L+VD +                      +              +    L +       
Sbjct: 155 RVLVVDDNERQAARICRYLET-DHKPMTLANAGAKPGGVGAGAATVDIMVLSLGGEKYDG 213

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+  A++R +    D+ +  ++   D    +     GA+  L++P + E L   ++    
Sbjct: 214 LKLCAYLRNLEATRDLPILAIVGAEDEALAVRALDLGASDILVRPIDPEELLARVKTQVS 273

Query: 120 MQKSKDENQ-FLD 131
            ++  D  +  LD
Sbjct: 274 KKRYIDSLRARLD 286


>gi|253570109|ref|ZP_04847518.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840490|gb|EES68572.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1511

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R   R +F    + V EA+   E      K  LP+ ++ D  M     +E 
Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASDGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1293

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1294 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1353

Query: 122  KSKD 125
            K ++
Sbjct: 1354 KLQN 1357


>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
           [Prochlorococcus marinus str. MIT 9202]
          Length = 242

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +F A    +  E   K + P+ ++ D  M      
Sbjct: 16  RILLVDDEPGLRAAVKTFLEDEGFEIFIAVDGEDGWEKA-KTIFPDLIISDVMMPRANGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|163802258|ref|ZP_02196153.1| osmolarity response regulator [Vibrio sp. AND4]
 gi|159174063|gb|EDP58873.1| osmolarity response regulator [Vibrio sp. AND4]
          Length = 146

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNTLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +          + V       +  +        + +++D  +    
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYY-DLIILDLMLPSIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901]
 gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family
           [Teredinibacter turnerae T7901]
          Length = 231

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLVD    +  +        GF V +A S   A            +V+D  M G+    
Sbjct: 7   ILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLASPPECQLIVLDIMMPGLSGLD 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R  P  +   V  L    D    I G   GA+ +L KP N   L   +R + +  ++
Sbjct: 67  VLQRLRPSNS-TPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRRTQN 125


>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+ D    + ++        G+ V +AT    A E  + +   + +V+D  M  
Sbjct: 1   MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQ-AIDLVVLDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+    ++ + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQL 118

Query: 119 QM-----QKSKDENQFLDA 132
           +      Q   +E   L+A
Sbjct: 119 RRFLALNQPKVEETSVLEA 137


>gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +LLLV+    +R+  +       + V EA +  E  E   K    +  ++D  M  +
Sbjct: 1   MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEAL-KHNDIHLAIVDIMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++   + +D+ V +L  + +    I G   GA+ ++ KPF    L   +    +
Sbjct: 60  DGLTMTMKLREV-SDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLR 118

Query: 120 MQKS 123
             + 
Sbjct: 119 RYEQ 122


>gi|189463212|ref|ZP_03011997.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136]
 gi|189430191|gb|EDU99175.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136]
          Length = 1425

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R    H+     + V EA +     E    E +P+ +V D  M  +   
Sbjct: 1156 TILVVEDNDELRHFIVHILQKE-YRVLEAPNGRIGLEKVLAE-MPDVVVSDVMMPEMDGI 1213

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119
              +  V+       + V  L  +   +  I G   GA+ ++ KPF+   LR  ++  L Q
Sbjct: 1214 ELLNAVKTNHNVCHIPVIILSAKASLDDRIKGLEYGADGYITKPFSSAYLRARLKSVLLQ 1273

Query: 120  MQKSKD 125
                KD
Sbjct: 1274 RTHLKD 1279


>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 247

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    ++     GF V  + +   A E   +E     +V+D  +  +  F
Sbjct: 6   RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEE-FALVVLDIGLPDMTGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+    +V V +L         + G   G + +L KPF+   L   +R + +  +
Sbjct: 65  EVC-RQVRTSKNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQ 123

Query: 123 SKD 125
            + 
Sbjct: 124 PQA 126


>gi|170077561|ref|YP_001734199.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002]
 gi|169885230|gb|ACA98943.1| sensory box protein/response regulator [Synechococcus sp. PCC 7002]
          Length = 584

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+++   IVRK+ R +     + V EA    +  +       P+ +V D  M G  
Sbjct: 1   MTTILVIEDDDIVRKLIRKILTQQQYAVLEAAGGHQGVQLALAH-QPDLIVCDVMMPGID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  ++       +   +L    + + +  G R GA+ +L KPF +E L  A+    
Sbjct: 60  GYGVLQKLQAEAATAMIPFVFLTARAEKQDIRQGMRLGADDYLTKPFTKEELLSAI--AI 117

Query: 119 QMQKSKDENQ 128
           ++ K     Q
Sbjct: 118 RLSKLSSLQQ 127


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|75909821|ref|YP_324117.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75703546|gb|ABA23222.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 393

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD S     + + +  + G+ V  A +   A    +     + +++D  M G+   
Sbjct: 10  KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPC-DLVLLDLMMPGMDGY 68

Query: 62  -FIAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                VR +M L   + +  +        +  G   GA+ F+ KP   + L   +R L +
Sbjct: 69  EVTRRVRGEMKLQQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127

Query: 120 MQKSKDENQFLD 131
           ++ S DE   + 
Sbjct: 128 LKHSMDERDEIA 139


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +    E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQFLDA 132
              S+   +  DA
Sbjct: 119 RHYSQPAQEVNDA 131


>gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9]
 gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum
           SS9]
          Length = 239

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLSRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
 gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
 gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 241

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G+ + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESME-- 57
           M S+L+VD    +  +      + G+ V +A    EA       E   + +++D  M   
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRL 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R+    + + +  L  + +    I G   GA+ +++KPFN   L   ++ L
Sbjct: 61  NGIDTCRRIRE---TSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117

Query: 118 PQM 120
            + 
Sbjct: 118 LRR 120


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  ATS   A     K+  P+ +V+D  +  +  F
Sbjct: 13  RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAA-KDHRPDLVVLDVMLPDLDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    GT   V +L      +  I G   G + ++ KPF+ E L   +R + +   
Sbjct: 72  EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131

Query: 123 SKDE 126
           + ++
Sbjct: 132 TGEQ 135


>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
 gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
          Length = 234

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +  +      + V    +  +A +  ++  + +++++D  +  +   
Sbjct: 4   TILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRV-DFVIMDLMLPQLDGV 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +       + +  L  +      I G   GA+ +L KPF+ + L   ++ + + 
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120


>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKTIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 121 RRIEVHDE 128


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E  PN +V+D  +  +    
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRF-RETNPNLVVMDLMLPVMDGLE 67

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++V +  L  +   E  + G  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 68  VA-RRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123


>gi|94264235|ref|ZP_01288030.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|94266209|ref|ZP_01289918.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453216|gb|EAT03674.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455346|gb|EAT05550.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 403

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   + R +        G+ V       +A ++   +   + +++D  M  +   
Sbjct: 7   RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPC-DLVLLDVMMPVLDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    T + V       D E ++    AGA+ ++ KP +   L+  M    ++
Sbjct: 66  SALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPIDFPVLQARMDTQLRL 125

Query: 121 QKSKDEN 127
           +++ +E 
Sbjct: 126 KRTTEEL 132


>gi|313901404|ref|ZP_07834874.1| response regulator receiver protein [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468332|gb|EFR63776.1| response regulator receiver protein [Thermaerobacter subterraneus
           DSM 13965]
          Length = 144

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + K  R      GF V  AT   +A E        + +++D  +  V   
Sbjct: 4   RILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGG-IDLIILDLMLPEVDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   + V +  L    +    I G   GA+ +++KPFN   L   +R + +  K
Sbjct: 63  TVC-REVRKTSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRRVK 121


>gi|291532478|emb|CBL05591.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 194

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+  H + +  +      GF     ++   A E   +E   + +++D  +  + 
Sbjct: 1   MSKILIVEDEHRIARFLQMELEHEGFSTASESNGLRAYERIIQEDY-DLVLLDIMLPDMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +VR++   +D+ +  L  + +    + G   GA+ ++ KPF  + L   +R   
Sbjct: 60  GLTICQNVRKL---SDIPIIMLTAKDEINDKVTGLDIGADDYITKPFAIQELLARIRATL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RKHNN 121


>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
 gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
          Length = 241

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    +R++ +       ++VFEA +  +A +   +    + +++D  +  +   
Sbjct: 7   NLLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDY-DLILLDLMLPKMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      D  +  L  + +    I G   GA+ +++KPF+   +   +  + +  +
Sbjct: 66  EVAGKIREA-KDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124

Query: 123 SKDENQ 128
           S    +
Sbjct: 125 SSKPKE 130


>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 227

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++         ++V  AT+  E  +   KE   + +++D  M  +  
Sbjct: 4   QRILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKF-KESKYDMIILDIKMPNLDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +++ + +L    D    I G   G + ++ KPF+   L   +  + +
Sbjct: 63  HTTCKMIRN---TSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLR 119

Query: 120 MQKSKDENQFLD 131
              ++++N  L+
Sbjct: 120 RSHNENKNTSLN 131


>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    +R + R      GF +FEA+   E      KE   + +++D  M  +
Sbjct: 1   MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEK-IDLIILDIMMPKM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 + ++   ++V V +L  + + E  + G   GA+ ++ KPF+ + L   ++ L +
Sbjct: 60  NGL-EMLEKLREVSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLK 118

Query: 120 MQK 122
             +
Sbjct: 119 RTR 121


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKTE 122


>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 224

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 1   MPTILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPV-DLVVLDIMMPIMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +  L    +  + + G   G + +L KPF+   L   +R L 
Sbjct: 60  GWTLCKELRR--ANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALL 117

Query: 119 QMQK 122
           +  K
Sbjct: 118 KRYK 121


>gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
 gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
          Length = 241

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
 gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
          Length = 230

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + ++  +  +  G+ V+ A++  E     +K   P+ +++D  M  +   
Sbjct: 7   KILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKK-KQPHLIILDVMMPEMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   +  V +L    +    +AG  AGA+ ++ KP   + L   ++ L + 
Sbjct: 66  EACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125


>gi|114563674|ref|YP_751187.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella frigidimarina NCIMB 400]
 gi|114334967|gb|ABI72349.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella frigidimarina NCIMB 400]
          Length = 331

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      +V + +  D  + +  A S  EA    E++ LP+ +++D  M G+ 
Sbjct: 9   MPTILIVDDEPANLRVLKKMLEDQ-YRLIFAKSGEEALRLIERD-LPDLILLDVMMPGMT 66

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++ +     V V ++    D      G   GA  ++ KP +   ++  +R   
Sbjct: 67  GFEVCQQLKTVQRTKAVPVIFITALSDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHL 126

Query: 119 QMQKSKDENQ-FLDAI 133
            + +++D  +  L  I
Sbjct: 127 SLVQAEDLRRTRLQVI 142


>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 237

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F         EA +       PN +++D  + G+  
Sbjct: 5   QRILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPV-FEPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCRELRAS---SQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RYQ 123


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G  V  A     A     +E  P+ +V+D  +  +   
Sbjct: 28  RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAV-RAAREFRPDVVVLDVMLPDMDGL 86

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 87  AVLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSG 146

Query: 123 SKDENQ 128
           +    +
Sbjct: 147 AAQAAR 152


>gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++  + +R+  R L     + V EA +     E    + L + +++D  M G+   
Sbjct: 5   RILIIEDDYDIREGIRILLESENYEVIEAENGMTGLEKL--DTLMDLVILDIMMPGMSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++     + V +L  +      + G  AG + +L KPF    L   ++ L + 
Sbjct: 63  RTCEEIRKVSF---LPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKALVRR 119

Query: 121 QKSKD 125
            +   
Sbjct: 120 YREYQ 124


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+S+L+VD    + ++      + G+  ++A +  EA E  +KE   + +++D  M  + 
Sbjct: 1   MNSILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKE-QIDIVILDIMMPDLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+        + +L  + +    I G   GA+ +L KPFN   L   ++ L 
Sbjct: 60  GKEVLRKIREKSS---TPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +  +       +G  V + +    A      E + + +++D  M  + 
Sbjct: 1   MATILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPV-DLVILDVMMPKMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     +DV +  L      E ++ G R GA+ ++ KPF+   L   +  L 
Sbjct: 60  GWEVCQDIRS---FSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALL 116

Query: 119 QMQKSKDE 126
           +  K +DE
Sbjct: 117 RRTKRQDE 124


>gi|83310215|ref|YP_420479.1| Serine phosphatase RsbU regulator sigma subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82945056|dbj|BAE49920.1| Serine phosphatase RsbU regulator sigma subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 537

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+ D S   R V     +  G  V        A E    +   + +++D  M G+   
Sbjct: 160 RVLVADDSKANRDVLVRYLSREGHQVVAVADGLAAVEAVFGQ-AFDLVLLDMIMPGMNGD 218

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  ++       + V  +      + ++    AGA  +L KPFNR  LR  +    + 
Sbjct: 219 EVLKAIKADSRLRSLPVIMISALDGLDSIVRCIEAGAEDYLPKPFNRVLLRARIGACLEK 278

Query: 121 QKSKD-ENQFLDAI 133
           ++ ++ E  +L A+
Sbjct: 279 KRLREVELSYLQAL 292


>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 230

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + +V R      GF    A+    A    ++   P+ +V+D  +     L
Sbjct: 4   RILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAI-AAQRRDAPDLVVLDIGLPEKDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +DV + +L    +    I G   GA+ +L KPF+   L   ++ + + 
Sbjct: 63  EVCRDIRKS---SDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKR 119


>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 268

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    VR+V        G+ V  A    EA     KE  P+ +V+D  +  +  F
Sbjct: 24  TVMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKE-QPDLVVLDVMLPKLDGF 82

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 83  AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 139


>gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
 gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 1_1_6]
          Length = 1353

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R+   +   D  F   EA +  EA E  +   + + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRRYLNNGLADL-FNTLEAGNGEEALEKLKDNEV-DVIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                +V+Q      + V  L  + D +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 120  MQKSKDE 126
             ++  D+
Sbjct: 1222 RRRMLDK 1228


>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
          Length = 227

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +    G+ V    S   A E       P+ +++D  + G+   
Sbjct: 4   KVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAA-TQPDLVLLDVMLPGMDGI 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
              + +RQ    +DV +  L    D   ++AG  AGA+ ++ KPF  + L   ++   + 
Sbjct: 63  EICSLIRQK---SDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRG 119

Query: 120 MQKSKDENQFL 130
            +++ +E+  L
Sbjct: 120 REETTEEHVRL 130


>gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512]
          Length = 457

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    EA   CE+    + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERN-QVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KTLSDELRIRA 133



 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E   + ++++ + +      
Sbjct: 158 VLLVDGRANSQERIVRALKPV-ADVLALSDPQAALFEA-AEHAFDLVIVNANFDDYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  +   E ++     G N ++++P +   L        + +
Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIVRPVDPNELVARSLTQIRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYNDRLR 282


>gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 265

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKG-QALALQYNPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    + + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122


>gi|293370383|ref|ZP_06616937.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292634531|gb|EFF53066.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1470

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F+   + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1197 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGANKALK-YLPDIIISDVMMPEKDGIEM 1254

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1255 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1314

Query: 122  KSKD 125
            K + 
Sbjct: 1315 KLQS 1318


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A +  EA     +    N +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNY-NLVILDFMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGIEVCKKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKTE 123


>gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia MC0-3]
          Length = 312

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +              G++V  A S  +A +   + + P+ +++D  M  +  F 
Sbjct: 2   ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 60

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q      + V ++    + E ++ G R G   ++ KP   E L   +    +  
Sbjct: 61  TCVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120

Query: 122 KSK 124
           +++
Sbjct: 121 RAQ 123


>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
 gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
          Length = 225

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +         +FG  V  A       E  ++E     L++D  M  + 
Sbjct: 1   MAKILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQED-FQLLILDIIMPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   RQ        V  L      + ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLQLCKQYRQTYGYQS-PVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQKSK 124
           +   ++
Sbjct: 119 RRTGAE 124


>gi|302036150|ref|YP_003796472.1| transcriptional regulatory protein pilR [Candidatus Nitrospira
           defluvii]
 gi|300604214|emb|CBK40546.1| Transcriptional regulatory protein pilR [Candidatus Nitrospira
           defluvii]
          Length = 459

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+VD    +R V   +    G++V  A+   EA    +KE + + ++ D  M   G
Sbjct: 1   MEKILVVDDEQGLRDVLSIMLKRAGYVVTVASDGDEAIAQVQKE-IFDLVITDLKMPRVG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  V+      D  V  +      +  +   + GA  +L KPF  + ++  +R   
Sbjct: 60  GLEVLKAVKA--ASPDTVVLMITAFASADSAVEAMKHGAYDYLTKPFQVDEVQLIIRNAI 117

Query: 119 QMQKSKDENQFLD 131
           + ++   EN  L 
Sbjct: 118 ERRRLSTENMLLK 130


>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    +R + R      GF +FEA+   E      KE   + +++D  M  +
Sbjct: 1   MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEK-IDLIILDIMMPKM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 + ++   ++V V +L  + + E  + G + GA+ ++ KPF+ + L   ++ L +
Sbjct: 60  NGL-EMLEKLREVSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLK 118

Query: 120 MQK 122
             +
Sbjct: 119 RTR 121


>gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC
           7002]
 gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus
           sp. PCC 7002]
          Length = 227

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R     +    G  V  A +  +  E    +   + L++D  +      
Sbjct: 2   RILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEY-DLLILDWMLPQYSGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   LG    + +L  +   +  ++G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
 gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
           B]
 gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Vollum]
 gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Australia 94]
 gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 250

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 18  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 77  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 133


>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 216

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             L+LVD    +  +        G+ V  A +  +A E  E+E +P  ++ D  M  +  
Sbjct: 11  RRLMLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEE-VPELIICDIMMPEMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R+      + V +L  +   E  + G   GA+ +++KPF+ E L   +    +
Sbjct: 70  YTLVKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLR 129

Query: 120 MQK 122
             +
Sbjct: 130 QTE 132


>gi|237714241|ref|ZP_04544722.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229445733|gb|EEO51524.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1523

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F    + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1237 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1294

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1295 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 1354

Query: 122  KSKD 125
            K + 
Sbjct: 1355 KLQS 1358


>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 223

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 3/123 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    +R + R      GF +FEA+   E      KE   + +++D  M  +
Sbjct: 1   MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEK-IDLIILDIMMPKM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 + ++   ++V V +L    + E  + G   GA+ ++ KPF+ + L   ++ L +
Sbjct: 60  NGL-EMLEKLREVSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLK 118

Query: 120 MQK 122
             +
Sbjct: 119 RTR 121


>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
 gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 241

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42]
 gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 457

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    EA   CE+    + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERN-QVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KTLSDELRIRA 133



 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E   + ++++ + +      
Sbjct: 158 VLLVDGRANSQERIVKALKSV-ADVVALSDPQAALFEA-AENTFDLVIVNANFDDYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  +   + ++     G N +L++P +   L        + +
Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADDMVVRALDLGVNDYLIRPVDPNELVARSLTQIRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYNDRLR 282


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 59  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 116

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 117 RRVKKTE 123


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  140 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+  +  G+ V       +A     KE  P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRL-KERTPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKD 125
              + 
Sbjct: 123 AAPER 127


>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    AT   EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + + +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  GL-EVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            ++  ++Q
Sbjct: 119 AENAVQDQ 126


>gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA E  +++   + +++D  M  + 
Sbjct: 1   MIKILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKN-FDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+    +V +  L        M+ G   GA+ ++ KPF+ + L   +  + 
Sbjct: 60  GWDTCYQIRQL---CNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
          Length = 255

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ +      G+ V  A S  EA +          L++D  M  + 
Sbjct: 30  MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKMDIASYQ--LLLLDVMMGEIS 87

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F   + +R+     D+ + +L  +     M+ G   GA+ ++ KPF+   +   ++ + 
Sbjct: 88  GFKMASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVL 147

Query: 119 QM---QKSKDENQFLD 131
           +    ++   EN+ L 
Sbjct: 148 RRTSDKEKVQENECLK 163


>gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1197

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +  +R     +    G+ V+ A +  E  +   ++  P  +V D  M  +   
Sbjct: 833 RILVVDDNSDLRAYVGSILKQSGYQVWTARNGEEGWQM-TQKCHPQLIVTDLMMPVMSGL 891

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R       + +  L  + D    I G   GA+++L KPFN   L   +R L  +
Sbjct: 892 DMIHTIRGSQDFKGIPIILLTAKADEASRIEGTEKGADAYLSKPFNDRELLAEVRNLLAL 951

Query: 121 QKSKDE 126
           ++ +  
Sbjct: 952 KEQEQR 957



 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 31  ATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMI 90
           A +   A E  E E     ++ D+ M  +              D+    L    D E ++
Sbjct: 3   ADNGPAALEILEAEGDVAVIISDQRMPLMSGTEFLSITAAQYPDIIRIILTGYTDVEDLV 62

Query: 91  AGARAG-ANSFLLKPFNRETLRFAMRELP 118
               AG    ++ KP+N E L+  +R+  
Sbjct: 63  EAINAGKVFKYVTKPWNAEELKSVVRQAM 91


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +  ++  ++A
Sbjct: 124 DALAKDSKIEA 134


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +   
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 123 SKDE 126
            K E
Sbjct: 126 GKAE 129


>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 240

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    + ++        GF    A     A+   +  +LP+ +++D  + G   L 
Sbjct: 7   VLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDA-VLPDVILLDWMLPGESGLA 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R  P    + +  L    D    +AG  AGA+ ++ KPF+ + L   MR + + +
Sbjct: 66  LAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRRR 125

Query: 122 KSKD 125
             + 
Sbjct: 126 APEQ 129


>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+++    +  +      D G++   A    +      +E  P+ +V+D  +     
Sbjct: 3   QKILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREH-PDLVVLDIMLPAIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     +   +  L      +  I G   GA+ +LLKPF+   L   +R + +
Sbjct: 62  FEVCRRIRA---WSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILR 118

Query: 120 MQKSKDE 126
              S  E
Sbjct: 119 RIPSSQE 125


>gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R   R       F V  A+   EA    ++  +   +++D  +  +  
Sbjct: 5   KYILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVV-LVILDIMLPNMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    + V +  L    +    IA    GA+ +L KPF+   L   ++ + +
Sbjct: 64  LEVCRRIRQK---STVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLR 120

Query: 120 MQK 122
              
Sbjct: 121 RSH 123


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 121 RRIEVHDE 128


>gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 240

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LLLVD    + +  R      G+ V  A            E  P+ +++D ++     L
Sbjct: 9   RLLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDFTGL 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G  V V  L    + +  +    AG + +L+KPF+ E L   +R L + 
Sbjct: 69  DICRRIR--STGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRR 126

Query: 121 QKSKDEN 127
             +    
Sbjct: 127 SNALQPQ 133


>gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 239

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V  A +  +  +          +++D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQ-MDRLLTRESIQLIILDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  +  + +    I G   GA+ +L KPFN   L   MR + + Q
Sbjct: 65  SVCRRLRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRRQ 123


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + ++     GF V  +    EA E    E  P+ +++D  + G   +
Sbjct: 4   KILIVEDEEALALLLQYNLEAEGFSVSISQRGDEA-EVAIGEEPPDLIILDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + +  L    +    I G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRR 122

Query: 121 QKSKDENQFLD 131
              +  +Q L+
Sbjct: 123 AAPERISQTLE 133


>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 230

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 7/139 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +LLV+    ++++        GF   +A  V  A     +  LP+ +++D  + G
Sbjct: 1   MTTANILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRA-LPDLILLDWMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R      D+ +  L   +D    I G  +GA+ ++ KPF+   L   +R 
Sbjct: 60  TSGVELARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRA 119

Query: 117 LPQMQ--KSKDENQFLDAI 133
           + + +  +  DE   ++ +
Sbjct: 120 VLRRRAPQMSDETVRVEGV 138


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD +  +  +  H   + G+ +  A +  E   +      P+ +++D  +  + 
Sbjct: 1   MKTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYF-TNYKPDVILLDVMLPDID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R++     V +  +  +   +  + G   GA+ ++LKPF+ + +   +R + 
Sbjct: 60  GFEVCQCIRKVSR---VPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  +   E 
Sbjct: 117 RRTEDNPEQ 125


>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
 gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
          Length = 247

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDY-DLILLDIMMPGKDGI 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G   G++ +++KPF+   +   ++ + + 
Sbjct: 74  EVCKGIREK---KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 130


>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +      GF V   T+        +KE  P+ +++D  + G+  
Sbjct: 3   KKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|237719712|ref|ZP_04550193.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229450981|gb|EEO56772.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1379

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  + ++   L +   + VF+A +  E     E E   + +V D  M  +   
Sbjct: 1127 SILVVEDNEELLQLMVKLLSRE-YNVFKAENGKEGVTILENED-IDLIVSDVMMPEMDGI 1184

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F  +V+     + + V  L  +   E        GA++F+ KPFN   L   +R L + 
Sbjct: 1185 EFCKYVKGNLEISHIPVILLTAKNKEEDRAEAYEVGADAFIAKPFNLAVLHARIRNLLKY 1244

Query: 121  QKSKDEN 127
            ++    +
Sbjct: 1245 KERMAHD 1251


>gi|167950458|ref|ZP_02537532.1| Response regulator receiver [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 283

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L++D    V+K+        G     A          ++E  P+ +++D  M G    
Sbjct: 6   NVLIIDDDRFVQKLISKTLAASGLSTRTADDGESGIAIAQQE-QPDLILLDVEMPGINGY 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R +P   D+ V +L       + + G   GA+ +L+KPF  E L   +  L + 
Sbjct: 65  EVCDRLRSLPETQDIPVVFLSSHGTLRERLQGYEVGADDYLVKPFEAEHLLARINVLMRY 124

Query: 121 QKSKDEN 127
              + E 
Sbjct: 125 GAERKEL 131


>gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +V+    +R++  +     GF      +  E  +       P  +++D  + G     
Sbjct: 2   IFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGIS 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
            +  +R+     D+ +  +  +      + G  +GA+ ++ KPF    L   ++ + +  
Sbjct: 62  ILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRRS 121

Query: 121 QKSKDENQFL 130
            +++ +++ +
Sbjct: 122 SRNEKKDEII 131


>gi|119509005|ref|ZP_01628156.1| Response regulator receiver domain protein (CheY) [Nodularia
           spumigena CCY9414]
 gi|119466171|gb|EAW47057.1| Response regulator receiver domain protein (CheY) [Nodularia
           spumigena CCY9414]
          Length = 121

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   R++   L    G +V  A    EA E  +    P+ +V+D  M  + 
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKASGLIVTHAHDGVEALEAIQTAP-PDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKSNPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 226

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R      GF V  A++   A      E  P  +V+D  +  + 
Sbjct: 1   MTRVLVVDDEPQILRALRINLTARGFDVTTASTGAGAL-RAAAERQPEVVVLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +  +   T+V V  L    D  + +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  GF-EVLAGLRGWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR 118


>gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 244

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 5/127 (3%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    +  +      + GF V    S   A E   +    + +V+D  M
Sbjct: 1   MKNEKYKILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMM 60

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            G+      +R +     V +  L    D    I G   GA+ +L KP N   L   ++ 
Sbjct: 61  PGMSGL-DVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKA 119

Query: 117 LPQMQKS 123
           + +  ++
Sbjct: 120 IIRRTEN 126


>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
 gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 240

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +      + G+ V  A +  +     E+E   + +V+D  + G   
Sbjct: 6   TKILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLEREN-FHLMVLDLMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     ++ +  L  + D    I G   GA+ +L KPFN   L   ++ + +
Sbjct: 65  LSICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLR 122

Query: 120 MQ 121
            +
Sbjct: 123 RK 124


>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 231

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +      GF V   T+        +KE  P+ +++D  + G+  
Sbjct: 3   KKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 235

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R++      + G+ +  A+   EA E  +KE   + +++D  M  +  
Sbjct: 8   KTILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEK-IDLIILDIMMPKLDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + +  L  + +    I G   GA+ +++KPFN   L   ++   +  
Sbjct: 67  IRTCIKIRED-KKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRV 125

Query: 122 KSKDENQFLD 131
            S  E + ++
Sbjct: 126 TSFSEAKEIN 135


>gi|224537041|ref|ZP_03677580.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521349|gb|EEF90454.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1439

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            S+L+V+ +  +R    ++     + V EA +     E   K  +P+ ++ D  M     +
Sbjct: 1175 SVLVVEDNEELRHFMVNILRK-DYHVIEAENGKTGLEKI-KLKIPDLVISDIMMPCLDGI 1232

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  V++    + +    L  +   +  I G   GA+ ++ KPF+   LR  +  L + 
Sbjct: 1233 ELLEEVKKDYNVSHIPFVLLSAKATLDDRIKGLEYGADDYITKPFSSGYLRARISSLLKQ 1292

Query: 121  QKSKDE 126
            +    E
Sbjct: 1293 RSILRE 1298


>gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 245

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LL+V+    +R +        G+    A     A +     + P+ +++D  + G   
Sbjct: 8   TTLLIVEDDREIRSLLADFLGREGYDTRLAADGR-AMDAILAGIRPDLVILDIMLPGEDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      DV V  L  + D    I G   GA+ +L+KPFN   L   +R + +
Sbjct: 67  LSLCRRLRAQG---DVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILR 123

Query: 120 MQKSKDE 126
             ++   
Sbjct: 124 RVQAAAR 130


>gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +      + GF   EA    EA     +  + + +++D  M     
Sbjct: 4   RTVLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSV-DAILLDVMMPNQDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F   A +R+    +DV + +L    +    + G + G + +++KPF+   L   +  + +
Sbjct: 63  FSVCARIREQ---SDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|332885682|gb|EGK05928.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM
           22836]
          Length = 377

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L +  GF V  A     A E   K+ +P+ +++D +M  +  F
Sbjct: 9   TILVVDDVMTNVLLLQVLLDKEGFNVVTANDGQAAIEIIRKD-VPDLILLDINMPNMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             I  V++  L  ++ V +L    D + ++ G R G + ++ KPFN+E L   +
Sbjct: 68  EVIREVKKYSLYREIPVIFLTAMNDVDSIVKGFRLGGSDYITKPFNKEELMARI 121


>gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 246

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R++        G+ V  A    + RE      + + +V+D  + G   F
Sbjct: 15  SVLVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHV-DLIVLDVMLPGDDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               RQ+   + V +  L    D    + G   GA+ +L KPF+   L+  ++ L + 
Sbjct: 74  TLC-RQIREYSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKALLRR 130


>gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6]
 gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6]
          Length = 647

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    +  + R    D G+ V  A++  E     + +  P+ L++D  M  +  F
Sbjct: 30  RILIADDDPALCLLLRETLQDVGYEVRIASNGDELVRMAQDQP-PDLLLVDLMMPLMDGF 88

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R       + +  L        ++ G  +GA+ +++KP++ + L   +R   + 
Sbjct: 89  EAIRQLRNDTRTAHLPMIILTARSTSSDVVTGFDSGADDYIIKPYDVDVLLARIRSHLRR 148



 Score = 38.2 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           LL++    +R          G+    AT+V +A+    +   PN L+ + S   V     
Sbjct: 351 LLIEPDESLRATIATTVRLQGYRPMVATNVVDAQGLLARHPHPNILIANISDPTVWSLWN 410

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLL 102
            +R            L    + E +    R GAN+ ++
Sbjct: 411 TLRNTSHF-----IAL--VPNEEAVENAHRQGANAVII 441


>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
 gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
          Length = 224

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G+  F A    EA +  EK    + ++ D  M  + 
Sbjct: 1   MFQILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTN-IDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +       + +  +  +  FE    G  AGA+ +++KP +   +   +  L + 
Sbjct: 60  GYELTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKR 119

Query: 121 QKSKDE 126
            K   E
Sbjct: 120 SKLASE 125


>gi|262408382|ref|ZP_06084929.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262353934|gb|EEZ03027.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1524

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F    + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1238 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1295

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 1355

Query: 122  KSKD 125
            K + 
Sbjct: 1356 KLQS 1359


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLE-EKKFDLIILDVMMPNMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 68  EVCMKIREE-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124


>gi|301164100|emb|CBW23656.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis 638R]
          Length = 1330

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ +  +R    H  +D  + +   ++  EA     KE +P  ++ D  M  +  
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A ++     + + +  L    D + ++ G + GA+ +++KPFN   L+  +  L  
Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLT 1186

Query: 120  MQKSKD 125
             +    
Sbjct: 1187 NRALLK 1192


>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
 gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
          Length = 256

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--- 59
            +L+V+    + ++     +   F V +A     A      E  P+ +++D  M      
Sbjct: 30  KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEK-PDLILLDWMMPHGESG 88

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++F   +++ P   D+ +  L  + + +  + G  AG + ++ KPF+   L   ++ + +
Sbjct: 89  IDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLR 148

Query: 120 MQKSKDENQFLDA 132
                   + + A
Sbjct: 149 RTGIDMGKELMQA 161


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    + +   +     GF      +  EA     K    +  V+D  + G+  
Sbjct: 6   NRILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPY-DLFVLDIMLPGMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     T V V +L         + G   G + +L KPF    L   +R L +
Sbjct: 65  YELCRRLRSK---TTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|253565107|ref|ZP_04842563.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|251946572|gb|EES86949.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
          Length = 1330

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ +  +R    H  +D  + +   ++  EA     KE +P  ++ D  M  +  
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A ++     + + +  L    D + ++ G + GA+ +++KPFN   L+  +  L  
Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLT 1186

Query: 120  MQKSKD 125
             +    
Sbjct: 1187 NRALLK 1192


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  +         V  A    EA E  +     + +++D  +    
Sbjct: 8   MKKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDY-DIVLLDIMIPVYT 66

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR+    ++V +  L  + +    I G   GA+ ++ KPFN   ++  M+ + 
Sbjct: 67  GIEVCQMVRE---FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIL 123

Query: 119 QMQKSKD 125
           +    K 
Sbjct: 124 RRSGKKQ 130


>gi|53714602|ref|YP_100594.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|60682624|ref|YP_212768.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
 gi|52217467|dbj|BAD50060.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|60494058|emb|CAH08850.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
          Length = 1330

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ +  +R    H  +D  + +   ++  EA     KE +P  ++ D  M  +  
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A ++     + + +  L    D + ++ G + GA+ +++KPFN   L+  +  L  
Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLLT 1186

Query: 120  MQKSKD 125
             +    
Sbjct: 1187 NRALLK 1192


>gi|260171767|ref|ZP_05758179.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315920080|ref|ZP_07916320.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693955|gb|EFS30790.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1511

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F+   + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALK-YLPDIIISDVMMPEKDGIEM 1295

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355

Query: 122  KSKD 125
            K + 
Sbjct: 1356 KLQS 1359


>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
 gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R         V  A    EA ++  K    + +++D  +  +  
Sbjct: 4   KKILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYA-KNCEYDLVLLDVMLPKMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D+ +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 63  FQVCQAIRE---FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 119

Query: 120 MQKSKDE 126
               K+E
Sbjct: 120 RTARKEE 126


>gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
 gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
          Length = 239

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+         G+ VF+A    E  E  EKE   +  ++D  M  + 
Sbjct: 7   MNHVLVVEDDKEIREGVEIYLKSQGYEVFQAADGVEGLEVIEKED-IHLAIVDIMMPRMD 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+      D  V +L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 66  GISMVVKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 124

Query: 121 QKS-------KDENQFLDAI 133
            +        K+EN  +  I
Sbjct: 125 YRRFMERLGDKEENSRIHTI 144


>gi|119898775|ref|YP_933988.1| putative response regulator [Azoarcus sp. BH72]
 gi|119671188|emb|CAL95101.1| putative response regulator [Azoarcus sp. BH72]
          Length = 384

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LL+VD +     V   +     + V    S   A      E  P+ +++D  M  +  
Sbjct: 15  RTLLVVDDTPQNLAVLGEVLKSH-YQVRAVNSGERALRAAHTEPRPDLILLDVMMPEMDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + H+R+ P      V ++      +  + G   GA  ++ KPFN   +   +R   +
Sbjct: 74  YEVLRHLREDPATRATPVIFITAMTGSDDEMRGLELGAVDYITKPFNPSIVLARVRTQLE 133

Query: 120 MQKSKD----ENQFLDA 132
           +++++D    EN++L+A
Sbjct: 134 LKEARDRLARENEWLEA 150


>gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct]
          Length = 228

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+ +  +        +  G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDVMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +L+KPF    L   +  + + 
Sbjct: 61  ALCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119

Query: 121 QKSKDENQFLDA 132
            +     +   A
Sbjct: 120 AQGGGRRELSVA 131


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +     FN  G+ V  +    E     +   LP+ +++D ++ G+   
Sbjct: 5   RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTA-LPDVVLLDLNLPGMNGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ +  +  + D    + G   GA+ ++ KPFN + L   ++ L + 
Sbjct: 64  DVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRR 123

Query: 121 QKSKDE 126
            + + E
Sbjct: 124 AQGQSE 129


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A +  +A     +   P+ +++D  +  +   
Sbjct: 42  RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAV-RAARSFRPDAVILDIMLPDIDGL 100

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     TDV V +L  +   E  +AG  AG + ++ KPF+ E +   +R L +   
Sbjct: 101 EVLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSG 160

Query: 123 SKDENQ 128
                Q
Sbjct: 161 LVAAKQ 166


>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
 gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++        GF   EA    EA        + + +V+D  M  + 
Sbjct: 1   MTTILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPV-DLVVLDIMMPTMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     ++ +  L    +  + + G   G + +L KPF+   L   ++ L 
Sbjct: 60  GWTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|153807471|ref|ZP_01960139.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185]
 gi|149129833|gb|EDM21045.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185]
          Length = 1516

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F    + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1239 LLVEDNQELREFLRSIFTPV-YRVVEAADGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1296

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R   + + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1297 TRELRADMMTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLIQRK 1356

Query: 122  KSKD 125
            K + 
Sbjct: 1357 KLQS 1360


>gi|71905649|ref|YP_283236.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Dechloromonas aromatica RCB]
 gi|71845270|gb|AAZ44766.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Dechloromonas aromatica RCB]
          Length = 379

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD S     +   +  D  + +  ATS  +A +    +  P+ +++D  M G   
Sbjct: 8   QSILVVDDSPENIDLLSEVLRDE-YRIRVATSGEKALKIVYSDEPPDLILLDIMMPGLSG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    ++  P    + V ++      +    G   GA  ++ KP +   ++  +R    
Sbjct: 67  LEICRRLKANPDRRRIPVIFVTAMSSMDDEKRGLETGAVDYITKPISPPIVKARVRTHLA 126

Query: 120 MQKSKDENQFL 130
           +     E + +
Sbjct: 127 LYDQSRELEHM 137


>gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 508

 Score =  140 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    D G+    A    EA     +E     +++D  M  +   
Sbjct: 5   KILIVDDEPDIALILKLQLEDAGYKTATARDGVEALAAIAREK-FALVLLDIKMPRMDGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +DV V  +      +  +   + GA  ++ KPF+ E +   ++   Q+  
Sbjct: 64  QVLERVQSHYSDVAVVMMTAHGSEDIAVEAMKNGAFDYIAKPFSSEDVLQKVKRAIQLNT 123

Query: 123 SKDENQFLD 131
           ++ EN  L 
Sbjct: 124 ARQENIRLQ 132


>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ ++     G++ +EA    EA +   KE  P+ +++D  +  +  F
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIA-KEQNPDLIILDVMLPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R +     + +  L  + +    + G   GA+ ++ KPF+   L   ++   +   
Sbjct: 63  -SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRIS 121

Query: 123 S 123
            
Sbjct: 122 L 122


>gi|260642486|ref|ZP_05416052.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260621843|gb|EEX44714.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1459

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+V+ ++ +R    ++ ++  + V EA +  E  ++  ++ +P+ ++ D  M  +  
Sbjct: 1196 TSILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYA-QQYIPDLIISDVMMPIMDG 1253

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  ++       + +  L  +   +  IAG   G + ++ KPF+   L+  +  L +
Sbjct: 1254 LDMVKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTKILSLLR 1313

Query: 120  MQKSKDEN 127
             +K   + 
Sbjct: 1314 QRKQLQDL 1321


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + +V +      G+    +     A+     E  P+ +++D  +     +
Sbjct: 7   KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFV-EYKPDIVLLDIMLPQEDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R+     +  V  L  + +    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKAD---NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRR 122

Query: 121 QKSKD 125
             S++
Sbjct: 123 ANSEN 127


>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 227

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +  +  +     GF V +A    +A E  ++E  P+ LV+D  +     L
Sbjct: 2   KVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRE-RPSLLVLDLMLPHLSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+ P    + +  L  + +    + G   G + +L KPF  + L   ++ L + 
Sbjct: 61  DVCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120

Query: 121 QKSKDENQFLDA 132
            +     + + A
Sbjct: 121 SEEVQGGEIVKA 132


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    + ++        G+      S  +A    ++   P+ +++D  +  +   
Sbjct: 7   SILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQR-FRPDVVLLDWMLPDLSGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+      + V  L  +   E  +AG   GA+ ++ KPF+ + L   +  L + 
Sbjct: 66  RLLTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR 125

Query: 121 QKSKDENQFLDA 132
           +        L A
Sbjct: 126 KVPDRAKSLLRA 137


>gi|153870115|ref|ZP_01999582.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
 gi|152073419|gb|EDN70418.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
          Length = 396

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD   I  ++  +      + +  AT+  +A +  E  +    +++D  M  +  F 
Sbjct: 252 VLIVDDDPINLQILENQLRVENYAITRATTGHDALKALESGIPFAIILLDIMMPKMSGFE 311

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ      + +  L  +     ++ G +AGAN +L KPF++  L   ++   Q+ 
Sbjct: 312 VCQIIRQTYPANQLPIIMLTAKNQVSDLVQGMQAGANDYLTKPFSKGELITRIKTHIQLS 371

Query: 122 K 122
           +
Sbjct: 372 R 372


>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 233

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R      G+ V  A S  +A E       P+ +V+D  + G+   
Sbjct: 5   KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSG-RPDLVVLDLMLPGIDGL 63

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         +  L  + +   +I G   GA+ ++ KPF+ + L   +R + + 
Sbjct: 64  EVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRR 123

Query: 121 QKSKD 125
           Q++K 
Sbjct: 124 QQAKA 128


>gi|75906871|ref|YP_321167.1| diguanylate phosphodiesterase [Anabaena variabilis ATCC 29413]
 gi|75700596|gb|ABA20272.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Anabaena variabilis ATCC
           29413]
          Length = 403

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    VR+    L     F    A +          E  P+ ++ D  M    
Sbjct: 1   MIKILVIEDEESVRENILDLLQAEDFHTVSAANGRIGINLALAE-FPDLILCDMMMPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               ++ +RQ PL   +   +L  +        G   GA+ +L KPF R  L  A+    
Sbjct: 60  GYGVLSALRQEPLTATIPFIFLTAKSAKADFRQGMDMGADDYLTKPFTRAELLSAVMNRL 119

Query: 119 QMQKSKDE 126
           + Q +  +
Sbjct: 120 ERQATLKK 127


>gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           SDF]
 gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii]
          Length = 236

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--- 60
           +L+VD    +R++     +  GF   +A    +A +    +  P  +++D  + G +   
Sbjct: 6   ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQ-RPALILLDWMLPGGVSGV 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++     ++ V  L    + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124

Query: 121 QKSKDENQFLDA 132
             +    + +DA
Sbjct: 125 ANALSGEKTIDA 136


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    +  + +      G+    A    EA +  E+E   + +++D  +    
Sbjct: 1   MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEG-FDLILLDIMLPEID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R +     + V +L  + + E  + G +AGA+ +L KPF    L   +  + 
Sbjct: 60  GYELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 230

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  + +      G+ V  +    +A    + E   + +++D  +  +  F 
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSEN-FDMVLLDVMLPKLDGFS 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               VR+    +DV +  +  + D    + G   GA+ ++ KPF    L   +R   +  
Sbjct: 65  VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121

Query: 121 -QKSKDENQFLDA 132
            Q +  + + L A
Sbjct: 122 AQSASQDGKVLKA 134


>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +        GF V +A +  +A +   KE     +V+D  M  +  
Sbjct: 3   KTILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIF-KENTVELVVLDIMMPVMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +R++   + V V  L  + + E  I G   G ++++ KPF+ + L   ++ L +
Sbjct: 62  WTTCKEIRKI---SQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLK 118

Query: 120 MQKSKDENQ 128
                + NQ
Sbjct: 119 RAYPDENNQ 127


>gi|239833775|ref|ZP_04682103.1| two component response regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239821838|gb|EEQ93407.1| two component response regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 314

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R +        G  V  A    E  +   +  + + +++D  + G   +E
Sbjct: 83  VLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAV-DLIILDVMLPGKSGIE 141

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V +  L    D    I G   GA+ +L KPF+   L   +R + +  
Sbjct: 142 ICQDIRRHSR---VPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRL 198

Query: 122 KSKD 125
           ++  
Sbjct: 199 ENNR 202


>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 234

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R + R      G+ + EA    EA E C KE   + +++D  M  + 
Sbjct: 11  MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKED-FDLIILDVMMPELD 69

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L    +    I G   G + +++KPF+   L   ++ + 
Sbjct: 70  GFSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVI 126

Query: 119 QMQKSKD 125
                KD
Sbjct: 127 SRNNKKD 133


>gi|87125186|ref|ZP_01081032.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166955|gb|EAQ68216.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 175

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDRDMRELVGGHLEHNGFDVQRAEDGIKG-QALALQYSPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++V+    +R++ R      G+ V +A    +A    EKE  P+ +++D  M G+   
Sbjct: 5   TIMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEK-PDLILLDVEMPGMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     T + + ++    +    I G  AG + ++ KPF+   L   +R + + 
Sbjct: 64  EVCRRIRLK---TTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRR 120


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+    + +          + V          +        + +++D  +    
Sbjct: 1   MTNILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKAL-NKTYDLIILDLMLPNIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRQIRQQ---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPKKD 123


>gi|115375443|ref|ZP_01462704.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367570|gb|EAU66544.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 965

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R   R L  D   +V        A +       P+ ++ D  M      
Sbjct: 609 RVLVADDNSDMRGYIRSLL-DPTCVVETVQDGEAAYQAILDSP-PDLVLSDVMMPRLDGF 666

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VR+ P    V +  L      E  I G +AGAN +L+KPF+   L   +    ++
Sbjct: 667 GLLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRL 726

Query: 121 QKSKDENQFLD 131
            + + E + L 
Sbjct: 727 ARERSERERLA 737


>gi|260172902|ref|ZP_05759314.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
 gi|315921185|ref|ZP_07917425.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695060|gb|EFS31895.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1360

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
             +++V+ +  +R   +  F    + V +      A E+  ++   + ++ D  M G    
Sbjct: 1104 RIMIVEDNDDLRFYLKKTFASI-YTVIDKPDGESALEYL-QDKSVDLIISDVMMPGIQGD 1161

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  + + + ++ G  +GA+ +L KPF+ E L+  ++ + Q 
Sbjct: 1162 ELCRRIKSDFTTSHIPVILLTAKTEKDAILEGLESGADDYLTKPFDTEILKTKIKGVLQN 1221

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1222 RKIMRQ 1227


>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57
           M S+L+VD    +  +      + G+ V +A    EA +       + + +++D  M   
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R+      + +  L  + +    I G   GA+ +++KPFN   L   ++ L
Sbjct: 61  NGIDTCRRIRENSS---IPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117

Query: 118 PQM 120
            + 
Sbjct: 118 LRR 120


>gi|157144822|ref|YP_001452141.1| acetoacetate metabolism regulatory protein AtoC [Citrobacter koseri
           ATCC BAA-895]
 gi|157082027|gb|ABV11705.1| hypothetical protein CKO_00549 [Citrobacter koseri ATCC BAA-895]
          Length = 461

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    VR++    F+  G     A++   A +    +  P+ +++D  M 
Sbjct: 1   MKTRYRILIVDDEDNVRRMLATAFSLQGHETQCASNGQTALQHF-ADAPPDVVLMDIRMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +    A          V +  +    + E  +   R+GA  +++KPF+ + L   ++  
Sbjct: 60  EMNGIEALKVMRAQHPRVPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRA 119

Query: 118 PQMQKSKDENQFL 130
            Q+Q  K E + L
Sbjct: 120 LQLQAMKQEIRSL 132


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 10/135 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+  L+VD   ++ K  +      G+ V  A    EA +   KE   + +++D  +  + 
Sbjct: 1   MNKALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMA-KEKEYDIVLLDVMLPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GMEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAII 116

Query: 119 QM----QKSKDENQF 129
           +      K+ ++N+ 
Sbjct: 117 RRNSKKAKAVEKNER 131


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + +  +   ++ G++V    +  +A      ++  + +++D  +      
Sbjct: 2   RILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIF-DVDYDLIILDIMLPVKDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR    G    +  L      E  + G  AGA+ +L+KPF+   L   +R + + 
Sbjct: 61  KVCREVR--ENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRR 118


>gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 240

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 54/137 (39%), Gaps = 9/137 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R V         ++   A    EA +       P+ +V+D  +  +  
Sbjct: 4   QTILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALL-CNPSLIVLDIGLPEMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                H+R     ++V + +L    D    I G   GA+ ++ KPF+   L   +  + +
Sbjct: 63  LDVCRHLR---RTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILK 119

Query: 120 MQK---SKDENQFLDAI 133
                 +   ++ L A+
Sbjct: 120 RYGGLTAAQTDEDLPAL 136


>gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205]
          Length = 234

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R+         GF V  AT+   A +  +++     +V+D  + G+   
Sbjct: 12  RLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDP-FELIVLDVMLPGINGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               + + L     V  +         + G   GA+ +L+KPF    L    R L +  +
Sbjct: 71  DLCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQ 130

Query: 123 SKDEN 127
           + D+ 
Sbjct: 131 ASDQQ 135


>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 238

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ R       + + EA     A +    E   + +++D  M G   +
Sbjct: 6   KILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMAL-EKDYSCILLDIMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +          V  L  + +    + G   GA+ +++KPF+   +   ++ L + 
Sbjct: 65  EVCQEL---HEKKMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRR 121


>gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
 gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
          Length = 230

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  + +      G+         E     +K+   +  ++D  M     F
Sbjct: 5   KLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKY-DLCLLDIMMPKKDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   +  ++ + +L  +   + +I G + GA+ ++ KPF+ E L   +  + +  +
Sbjct: 64  TLAKEIKKVQDNLPILFLTAKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAILRRTQ 123

Query: 123 SKDE 126
              E
Sbjct: 124 KSSE 127


>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R + R  F   GF V EA+   EA      E + +  ++D  M  +  
Sbjct: 3   KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++R++   ++  +  L  +   E  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLR 118

Query: 120 MQKSKDENQFLD 131
              + ++   LD
Sbjct: 119 RTGTLNDKNILD 130


>gi|94264861|ref|ZP_01288636.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454682|gb|EAT04947.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 391

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      ++   +  D G  VF AT   EA   C     P+ +++D  M  +   
Sbjct: 11  RVLVVDDQPPNIQLLAEVLAD-GHQVFIATGGAEALAICRAPQPPDLVLLDVVMPEMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V ++      E+ + G  AGA  ++ KP++   +R  +R   + 
Sbjct: 70  EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQLE- 128

Query: 121 QKSKDENQFLD 131
              + +N+ L 
Sbjct: 129 --LQSKNRILA 137


>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 224

 Score =  140 bits (354), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +         G+ V  A    EA E       P+ +++D  +  + 
Sbjct: 1   MSRVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHP-PDVVILDLGLPDLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T V +  L    D    +    AGA+ ++ KPF  + L   +R + + 
Sbjct: 60  GV-DVIAGLRGWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRR 118

Query: 121 QKSKD 125
            ++ D
Sbjct: 119 NQAVD 123


>gi|294808197|ref|ZP_06766963.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|294444606|gb|EFG13307.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1483

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F    + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1197 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 1254

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1255 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 1314

Query: 122  KSKD 125
            K + 
Sbjct: 1315 KLQS 1318


>gi|83310939|ref|YP_421203.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945780|dbj|BAE50644.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Magnetospirillum magneticum AMB-1]
          Length = 393

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     V   L  D  + V  A+S  +A +    E  P+ +++D  M G    
Sbjct: 12  TILVVDDTPDNLAVLSSLLKDE-YRVKVASSGEKALKVAMAETSPDLILLDIMMPGLDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + V +L  + + +    G   GA  ++ KP +   +   ++   ++
Sbjct: 71  EVCRRLKAEPRTHHIPVIFLTAKAEVDAEKTGLDLGAVDYITKPISPPIVLARVKTHLKL 130

Query: 121 QK----SKDENQFLD 131
           +      +D+N FL+
Sbjct: 131 KATADFLRDKNDFLE 145


>gi|17231163|ref|NP_487711.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132804|dbj|BAB75370.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 407

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD S     + + +  + G+ V  A +   A    +     + +++D  M G+   
Sbjct: 24  KILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPC-DLVLLDLMMPGMDGY 82

Query: 62  -FIAHVRQMPLGTD-VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                VR        + +  +        +  G   GA+ F+ KP   + L   +R L +
Sbjct: 83  EVTRRVRGEMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 141

Query: 120 MQKSKDENQFLD 131
           ++ S DE   + 
Sbjct: 142 LKHSMDERDEIA 153


>gi|17228725|ref|NP_485273.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130577|dbj|BAB73187.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 403

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    VR+    L     F    A +          E  P+ ++ D  M    
Sbjct: 1   MIKILVIEDEESVRENILDLLQAEDFHTVSAANGRIGINLALAE-FPDLILCDMMMPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               ++ +RQ PL   +   +L  +        G   GA+ +L KPF R  L  A+    
Sbjct: 60  GYGVLSALRQEPLTATIPFIFLTAKSAKADFRQGMDMGADDYLTKPFTRAELLSAVMNRL 119

Query: 119 QMQKSKDE 126
           + Q +  +
Sbjct: 120 ERQATLKK 127


>gi|300725849|ref|ZP_07059315.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid [Prevotella bryantii B14]
 gi|299776896|gb|EFI73440.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid [Prevotella bryantii B14]
          Length = 1355

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  + ++ + +  +  + +  A +  +A    +KE L + ++ D  M  +   
Sbjct: 1104 TILIVEDNLELLQLMQKILGNL-YHIITAKNGSQAWNIIQKESL-DLVISDIMMPIMDGL 1161

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + V  L  +   E    G  AGA+ F+ KPF+ E L+  +  L   
Sbjct: 1162 ELTRLIKTNHDYQLIPVVLLTAKTTTEDKNKGLEAGADDFMNKPFSMEELKMRIANLLDN 1221

Query: 121  QKSKDEN 127
            +K+    
Sbjct: 1222 RKNIQRL 1228


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
            + ++   +
Sbjct: 119 RRYTQPAQE 127


>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1159

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD   I   + RHL    G+ +  ++   +A     +E + + +++D  M      +
Sbjct: 752 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPV-DLILLDVMMPTLSGFD 810

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ      + V  L      + +  G  AGAN +L+KPF +E L   +R L +  
Sbjct: 811 VCRRLRQQHPKEKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVRALLEAS 870

Query: 122 KSKD---ENQFLD 131
             +    EN+ L 
Sbjct: 871 AGRASLVENRLLK 883


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +      +  G+ V  A           +E  P+  V+D  + G+    
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLA-RESTPDLAVLDWMLPGLSGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G  + V  L    +    +AG  AGA+ +++KPF+ E L   +R   +  + 
Sbjct: 64  ICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123

Query: 124 KDEN 127
            DE+
Sbjct: 124 TDED 127


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+V+  H +  +  H     G+    A    EA    +     + +++D  +   
Sbjct: 1   MKARILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEW-DVILLDVMLPHR 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    +RQ        V  L    D    + G   GA+ ++ KPF+   L   ++ +
Sbjct: 60  DGLEICRQLRQEKNY--TPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVI 117

Query: 118 PQMQKS 123
            + +  
Sbjct: 118 LRRRNL 123


>gi|288959193|ref|YP_003449534.1| two-component response regulator, modulated serine phosphatase
           [Azospirillum sp. B510]
 gi|288911501|dbj|BAI72990.1| two-component response regulator, modulated serine phosphatase
           [Azospirillum sp. B510]
          Length = 416

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+VD + + R +   L    G   + +A    +A    E+   P+ +++D  M  +  
Sbjct: 36  RVLIVDDNRMNRNLLTALLERGGITLIDQAEDGQDALTRMER-CKPDLILLDLMMPRMDG 94

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    H+R  P    + V         E       AGA  ++ KP +   L   +R   +
Sbjct: 95  FEMCRHLRADPRWKSLPVLVQSSLDRPEDRARAFIAGATDYITKPVSAVELLARVRIQLR 154

Query: 120 MQKSKDENQF 129
            +    + + 
Sbjct: 155 KRAMLRDLER 164


>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 225

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK+        G+ V EA    EA +   +      +++D  M  + 
Sbjct: 4   MK-VLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPRMD 62

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V +  L  + +    + G   GA+ ++ KPF+ + L   +  + 
Sbjct: 63  GWEVCRQIRKDSK---VPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAII 119

Query: 119 QMQKSKDEN 127
           +     D N
Sbjct: 120 RRAYGVDSN 128


>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
 gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
          Length = 241

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE---KELLPNYLVIDESMEG 58
             LL+V+    +R+      +  GF V    S   A E  +        + +++D  + G
Sbjct: 12  TRLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPG 71

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              L+   ++R+   G    +  +         + G   GA+ +L+KPF    L    R 
Sbjct: 72  VSGLDVCRYMRRR--GFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRA 129

Query: 117 LPQM 120
           L + 
Sbjct: 130 LLRR 133


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 119 RHYSQPAQE 127


>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      GF V   T+     +  +KE  PN +++D  + G+  
Sbjct: 3   KKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PNLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
          Length = 240

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61
            +LLVD    +R +         F V    S   A  +   +    + L++D  M G   
Sbjct: 5   RILLVDDDPRLRSILLRYLEMQDFSVCGVAS--TALMDRMLEREFFDLLLLDVMMPGEDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  R       + +  L    D +  + G   GA+ +L KPF  E L   +R + +  
Sbjct: 63  FEACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLRRS 122

Query: 122 K 122
           +
Sbjct: 123 Q 123


>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 229

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q+   +D+ +  L  +      I G  +GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-QVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 119 SQGEVTN 125


>gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R V        GF   EA +   A E     L+ + +++D  +  + 
Sbjct: 1   MKTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLV-DLVILDLMLPDMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L  ++     I G   GA+ +L+KPF+   +   +R + 
Sbjct: 60  GEQVCVSIRK---TNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAIL 116

Query: 119 QMQKSKDENQFLD 131
           +     D++Q L 
Sbjct: 117 RRT---DDSQLLA 126


>gi|160886890|ref|ZP_02067893.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483]
 gi|156107301|gb|EDO09046.1| hypothetical protein BACOVA_04904 [Bacteroides ovatus ATCC 8483]
          Length = 1511

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R+  R +F+   + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGKEGASKALK-YLPDIIISDVMMPEKDGIEM 1295

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1296 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1355

Query: 122  KSKD 125
            K + 
Sbjct: 1356 KLQS 1359


>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 254

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
 gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
          Length = 232

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R+  +    + G  V+EA    +A     +E   + +++D  M  +  
Sbjct: 4   NNVLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDAL-MILQEEEIHLILMDIMMPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  +      D+ +  L  + +    + G   GA+ ++ KPFN   L   ++   + 
Sbjct: 63  IKATFKIREK-KDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRR 120


>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 242

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  V        G+    A     A +       P+  ++D  + G+   
Sbjct: 6   RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +RQ    TD  +  +   V+    + G   GA+ ++ KPF+   +   ++ + + +
Sbjct: 66  -EVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRR 123


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ A S   A +     + P+ +++D  M G+  F
Sbjct: 22  KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLART-VRPDAVILDVMMPGMDGF 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D    +L      +  IAG   GA+ ++ KPF+ E +   +R + +   
Sbjct: 81  GVLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSG 140

Query: 123 SKDE 126
              E
Sbjct: 141 MGSE 144


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +         G+ +              +E  P+ +++D  + G+   
Sbjct: 5   RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTA-RESNPDLILLDWMLPGISGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+ V +  L  + D    +AG  AGA+ +++KPFN E L   +R   +  K
Sbjct: 64  EICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNK 123

Query: 123 SK--DENQFLD 131
            +  D  QFLD
Sbjct: 124 EENPDLLQFLD 134


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+  +  G+ V       +A     KE +P+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRL-KERIPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFLD 131
              +     L 
Sbjct: 123 ASPERLATVLA 133


>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
 gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
          Length = 231

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +          + V  A     A      E  P+ +V+D  +  + 
Sbjct: 1   MTRVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTAL-RLAAERHPDVIVLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   + V V  L      ++ +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  GV-DVLRGLRSWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRR 118

Query: 121 QKSKDENQFLD 131
            +    ++  +
Sbjct: 119 TEPAAPDEEAE 129


>gi|256376590|ref|YP_003100250.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920893|gb|ACU36404.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +    R      G  V  A+   +       E  P+ +++D  +  + 
Sbjct: 1   MSTVLVVEDEPDIALALRLNLERAGHEVRVASDGKQGLREL-HESQPSLVLLDIGLPVLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            ++   R   + +DV V  L         + G R GA+ +L KPF+ + L   +  + + 
Sbjct: 60  GWMVLERIRDV-SDVPVLLLTAHGMEADKVRGLRGGADDYLTKPFSAKELLARIEAILRR 118

Query: 121 QK 122
            +
Sbjct: 119 AE 120


>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
 gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + E+  + +++D  M  +  F
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
 gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
          Length = 519

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++ + +    G+ V  A S   A     +   P+ +++D  M  +  F
Sbjct: 15  KILVVDDLPENLRLLQDILVQQGYDVRFANSGKLALLSLSR-FQPDLILLDIMMPDLDGF 73

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V ++    D    + G + G N ++ KPF  E +   +R    +
Sbjct: 74  TVCQQLKANRETENIPVIFMSALDDGSNKVKGFQVGGNDYITKPFITEEVLARIRYQISL 133

Query: 121 QKSKDENQ 128
           Q  + + Q
Sbjct: 134 QTLQRQLQ 141


>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LL +    +R          G+ V       EA     +   P+ L++D  M G+  
Sbjct: 13  QTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTP-PDVLLLDVMMPGIDG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G    +  L   V+    IAG  AGA+ +++KPF+ E +   +R L +
Sbjct: 72  LQVCRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 129

Query: 120 MQKSKD 125
              +  
Sbjct: 130 RTGNAS 135


>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 212

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A++  E  E   +   P+ ++ D  M  +  
Sbjct: 5   KRLLLIDDDPNLILLAKDYLEFRGYEVVAASNGLEGLEAM-RHFTPDLIICDVMMPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  +R       + V +L         + G   GA+ +++KPF  E L   +    +
Sbjct: 64  YTFVETIRSNSATDWIPVIFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSLK 123

Query: 120 MQKSKDENQ 128
             +   + Q
Sbjct: 124 HTERLLQVQ 132


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+      +  +   ++ GF+V  A +  +     E E   + +++D  + G+  +
Sbjct: 2   RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAE-ETDYDVIILDVMLPGMDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++  V +L    D    + G   GA+ +L+KPF    L   +R     Q 
Sbjct: 61  TV-IKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCL-RQS 118

Query: 123 SKDENQFL 130
           +  E++ L
Sbjct: 119 TSKESERL 126


>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
          Length = 242

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   ++ ++      D G+ V  A          E+    + L++D  + GV  
Sbjct: 9   KRILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGW-DALILDLMLPGVDG 67

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR M       +            + G   GA+ +L KPF+   L   ++ L +
Sbjct: 68  LDICRRVRAM--TRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFR 125

Query: 120 MQKSKDENQFLD 131
            Q++   N  L+
Sbjct: 126 RQEAMGRNLMLE 137


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    +  +        G+ V       EA ++ E     + +++D  M  V 
Sbjct: 1   MK-ILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEY-DLVILDIMMPKVN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +    G    V  L      +  + G   GA+ +++KPF+   L   +R + + 
Sbjct: 59  GFEVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRR 118

Query: 121 QKSKDENQFL 130
           +     N+ +
Sbjct: 119 KYGNSSNKLM 128


>gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
 gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
           formatexigens DSM 14469]
          Length = 240

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++ R  F   G+ V  AT   EA +  E++  P+ +++D +M     +
Sbjct: 20  RILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKAEQQ--PDMILLDVNMPELDGM 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         + +L   ++    + G  AG + ++LKPF+   L   +    + 
Sbjct: 78  EVCRRIR---DFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRR 134

Query: 121 QKSK 124
           +  +
Sbjct: 135 ETRR 138


>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
 gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD   ++ K  R      G  V  A    EA     +E   + +++D  +     
Sbjct: 3   KRVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEAL-KLSRENAYDMILLDVMLPKYDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R+    +DV V  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FQVCQQIRE---FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKD 125
               +D
Sbjct: 119 RTSKRD 124


>gi|307153866|ref|YP_003889250.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
 gi|306984094|gb|ADN15975.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7822]
          Length = 613

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+++   I+R +   + +  GF V EAT+  +  E       P+ ++ D  M     
Sbjct: 25  TTILVIEDDEIIRDIINDILSLVGFDVIEATNGQQGLEIALS-TYPDLIICDIMMPQLDG 83

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  ++       +   +L  +     +  G   GA+ +L KPF+ E L  A+    +
Sbjct: 84  YGVLQALQCHSTTESIPFIFLTAKGTPVNIREGMDLGADDYLTKPFSEEGLLKAVTTRLK 143

Query: 120 MQKSKDENQFLDAI 133
            +++  E Q+++ I
Sbjct: 144 -KRASIELQYINKI 156


>gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
 gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
          Length = 1343

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+ + +  +R+          + + +A++  EA    +++   + ++ D  M  +   
Sbjct: 1098 TILIAEDNTDIRQYLCEELGKS-YHILQASNGEEALAILKEQDT-DLILTDVMMPVMDGL 1155

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  + D ++ + G + GA+ ++ KPF+   +   ++ L + 
Sbjct: 1156 QLCKQIKQSLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMAMVAAKIKNLFRT 1215

Query: 121  QKSKDE 126
            +    E
Sbjct: 1216 RHRAIE 1221


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  V        GF V  A+S  EA     ++  P+ L++D  +  +  F
Sbjct: 7   RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQV-RQFRPHLLLLDVMLPDMEGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V + +L      +  + G   G + ++ KPF+ E L   +R + +   
Sbjct: 66  EVARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTG 125

Query: 123 SKD 125
             +
Sbjct: 126 MAE 128


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+  + +  + R    D G+ +       ++    EK+ + + +++D  +     
Sbjct: 5   KKILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQ-VWDAVLLDLMLPNVDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +RQM     + V  +         I G   GA+ +L KPF+ + L   ++ L +
Sbjct: 64  LEICRRIRQMAGY--LPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L+
Sbjct: 122 RQEAMGQNIRLE 133


>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 232

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 121 RRIEVHDE 128


>gi|190573534|ref|YP_001971379.1| putative two-component system, response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190011456|emb|CAQ45074.1| putative two-component system, response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 242

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD  + +R +        G+ V  A     A          + +V+D ++    
Sbjct: 7   MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADG-TAMRQLLDREHVDLIVLDLNLPRED 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++  V  L    +    + G   GA+ +L KPF    L   +R + + 
Sbjct: 66  GLTLC-RDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 124

Query: 121 QKSKDEN 127
            ++   N
Sbjct: 125 TEALPAN 131


>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+ +    + ++        G+ + +A    EA    +     + +++D  M  
Sbjct: 3   MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNT-IDLVILDIMMPH 61

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +     +  +R+      + + +L  +      I+G   GA+ ++ KPFN   L   +  
Sbjct: 62  MDGYEVVRVIREQQ--YRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNA 119

Query: 117 LPQMQKSKDE 126
             +  +  ++
Sbjct: 120 QLRRFRQLNQ 129


>gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 227

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+ +  +        +  G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDVMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +L+KPF    L   +  + + 
Sbjct: 61  TLCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119

Query: 121 QKSKDENQFLDA 132
            +     +   A
Sbjct: 120 AQGGGRRELSVA 131


>gi|90022750|ref|YP_528577.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952350|gb|ABD82365.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 120

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD S  +R++        G  V EA    +A    +     + ++ D +M  + 
Sbjct: 1   MAKILIVDDSASMRQMVSFTLAGAGHQVTEAPDGADALALAKAGGSFDLVLSDVNMPKMD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R +P      +  L  E   +K   G  AGA  +++KPF+ + L   + ++ 
Sbjct: 61  GISLVKELRTLPTFKFTPILMLTTESGSDKKAEGKNAGATGWIVKPFSPDQLIATVNKVL 120


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++ ++        GF V  A    +A +   +   P  +++D  M G+  F
Sbjct: 13  RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKA-RSFRPQAMIVDVMMPGIDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D  V +L    D +  +AG   GA+ ++ KPF+ E +   +R + + 
Sbjct: 72  GLLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR 129


>gi|309790587|ref|ZP_07685142.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Oscillochloris trichoides DG6]
 gi|308227389|gb|EFO81062.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Oscillochloris trichoides DG6]
          Length = 332

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R +   +     +    AT+  EA +    E  P+ +++D +M      
Sbjct: 4   KILVVDDDPAIRDILVRILQRENYTPITATNGLEALDKVVHES-PDLILLDVTMPILDGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + V  L    D E    G   GA+ FL KP  +  LR  +R   ++
Sbjct: 63  EVCRRLKDNERTALIPVTMLTGLDDREHRRRGVEVGADDFLTKPIEQSLLRARLRSQLRI 122

Query: 121 QKSKDENQFLDAI 133
           ++  D+    +++
Sbjct: 123 KRLTDQLDRTESV 135


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+++    + ++        G+ V  A+   E    C  +  P+ L++D  +     L+
Sbjct: 3   VLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLS-CYYDSEPDLLIVDIMLPEVNGLD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               VRQ      V +  L  + + + ++ G  AGA+ +L+KPF  + L   ++ L + 
Sbjct: 62  ICRDVRQDDRL--VPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRR 118


>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R         + +L         I G   G + +++KPF+ + L+  +   
Sbjct: 59  DGFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAH 115

Query: 118 PQMQKSKDENQF 129
            + +K    N  
Sbjct: 116 LRREKRVPLNNR 127


>gi|16330586|ref|NP_441314.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1653077|dbj|BAA17994.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 368

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   L  D+ + V  A +  +A +  +    P+ +++D  M G    
Sbjct: 12  TILVVDDTPDNLALMSGLLKDY-YRVKIANNGEKALKVAQTLPPPDLILLDIMMPGIDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  AH++  P    + V +L  + + E    G   GA  ++ KP +   L   +     +
Sbjct: 71  EVCAHLKANPATQRIPVIFLTAKSEIEDERKGLALGAVDYITKPVSPPILMARVNTQLTI 130

Query: 121 QKSKD 125
           + + D
Sbjct: 131 KAAAD 135


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +   +  G++V EA    EA +  +       +++D  M  +  F
Sbjct: 5   KILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +  +   + V V  L    +    + G + G + ++ KPF+ + L   +  + +   
Sbjct: 65  -EVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRRTV 123

Query: 123 SKDENQFLD 131
            + E + + 
Sbjct: 124 GEPEEKLVA 132


>gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1259

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+    +R           F V  A +  E      KE +P  ++ D  M  +    
Sbjct: 1014 ILVVEDHTDLRDYIAETL-KEKFQVIVAANGQEGLRLA-KEHMPELIITDLMMPVMDGMS 1071

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R+    + + +  L  +   E  I G   G  S+L KPF+ + +   +  L   Q
Sbjct: 1072 LSRKLRENIHTSHIPIILLTAKDTTEDRIEGYELGIASYLTKPFSAQLVISRIENLLDAQ 1131

Query: 122  K 122
            K
Sbjct: 1132 K 1132


>gi|310821132|ref|YP_003953490.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394204|gb|ADO71663.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 972

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R   R L  D   +V        A +       P+ ++ D  M      
Sbjct: 616 RVLVADDNSDMRGYIRSLL-DPTCVVETVQDGEAAYQAILDSP-PDLVLSDVMMPRLDGF 673

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VR+ P    V +  L      E  I G +AGAN +L+KPF+   L   +    ++
Sbjct: 674 GLLQKVRENPKTQGVPLILLSARAGEEARIEGLQAGANDYLVKPFSARELLARIENAVRL 733

Query: 121 QKSKDENQFLD 131
            + + E + L 
Sbjct: 734 ARERSERERLA 744


>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 237

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        G+   +A +  EA        + + +++D  M  V   
Sbjct: 5   RILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDV-DLIILDIMMPKVNGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      ++ +  L  + +    I G   GA+ +L KPFN   L   +R   +  K
Sbjct: 64  EACLKIREE-REMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYK 122


>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    V +         G+ V  A    +A +   + L P+ +++D +M   G L+
Sbjct: 3   ILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLV-RSLRPDGVILDVTMPVLGGLD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G    V  L    +    +AG  AGA+ +L KPF  + L   +R L +  
Sbjct: 62  ACRALRA--SGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRG 119

Query: 122 KSKDENQFLDAI 133
                    +A+
Sbjct: 120 GYAGTAARSEAL 131


>gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 237

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+          + VF A    E  E  EKE   +  ++D  M  + 
Sbjct: 3   MNHILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEE-IHLAIVDIMMPRMD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 62  GITMTIKLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRR 120

Query: 121 QK------SKDENQFLDAI 133
            +         E++  D I
Sbjct: 121 YRKFMEKLQAKESERTDTI 139


>gi|298528058|ref|ZP_07015462.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511710|gb|EFI35612.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 378

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 66/131 (50%), Gaps = 5/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S + R++ R + N  G+ + EA    +ARE   +E LP+ +++D  M     F 
Sbjct: 12  ILIVDDSPLNRRMLRVVLNKAGYRIQEAEDGLQAREMA-REHLPDLILLDVMMPHEDGFD 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++     D+ + ++    D E ++ G   G   ++ KPF +  +   +R   +++
Sbjct: 71  TCIKLKKQSSTQDIPIIFISALNDTENIVKGLELGGVDYISKPFAQTEVMARIRVHLELK 130

Query: 122 KSKDENQFLDA 132
            +K+  + ++A
Sbjct: 131 FAKE--RLVEA 139


>gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia AU 1054]
 gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia
           cenocepacia HI2424]
          Length = 312

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +              G++V  A S  +A +   + + P+ +++D  M  +  F 
Sbjct: 2   ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 60

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q      + V ++    + E ++ G R G   ++ KP   E L   +    +  
Sbjct: 61  TCVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120

Query: 122 KSK 124
           +++
Sbjct: 121 RAQ 123


>gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
 gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
          Length = 234

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VRQ     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 118

Query: 120 MQKSKDENQ 128
            ++   +++
Sbjct: 119 RREITQKSK 127


>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
           iners AB-1]
 gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
 gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
          Length = 234

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  + E  P+ +++D  +     
Sbjct: 3   KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VRQ     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 118

Query: 120 MQKSKDENQ 128
            ++   +++
Sbjct: 119 RREITQKSK 127


>gi|294507366|ref|YP_003571424.1| Response regulator receiver containing Stage II sporulation protein
           E (SpoII) domain [Salinibacter ruber M8]
 gi|294343694|emb|CBH24472.1| Response regulator receiver containing Stage II sporulation protein
           E (SpoII) domain [Salinibacter ruber M8]
          Length = 371

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    VR++ ++      + V+ AT+  EA +  E E +P+ ++ D  M  +  F
Sbjct: 5   TILVVEDDSTVRELLKYRLGKH-YEVYTATNGEEALDQIE-ETIPDLIISDIMMPKMDGF 62

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       +   +L    D E    G R G + ++ KPF+ ETL   +  L + 
Sbjct: 63  ALQSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFDMETLLSRVERLLER 122


>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    + +       + G+ +F+A++  EA E  E     + +++D  M  +   
Sbjct: 2   NILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNE-IHLIIMDIMMPKMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ V  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 61  RATMKIREE-KNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRR 117


>gi|213962318|ref|ZP_03390581.1| two-component system sensor histidine kinase/response regulator
            hybrid [Capnocytophaga sputigena Capno]
 gi|213954984|gb|EEB66303.1| two-component system sensor histidine kinase/response regulator
            hybrid [Capnocytophaga sputigena Capno]
          Length = 1347

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +  +R   +H+ ++  F V  A    E  E      +P+ +V D  M     +
Sbjct: 1095 TILVVEDNDDMRDYIQHILSEH-FHVLLARDGEEGLELAIAH-IPDLIVSDIMMPKRDGI 1152

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119
              +  +R       + +  L       +++ G   G   ++ KPF+ + L   +   L  
Sbjct: 1153 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1212

Query: 120  MQKSKDE 126
             +K  ++
Sbjct: 1213 RKKLWEQ 1219


>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +       F V  A       +        + +++D  + GV  
Sbjct: 3   KRILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQK-GLGGDFDLIILDLMLPGVDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R      +  +  +  + D    I G   GA+ ++ KPF+   L   ++    
Sbjct: 62  FEICRQIRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118

Query: 120 MQK-----SKDENQFLD 131
             +     + +EN+ ++
Sbjct: 119 RYERLINSNAEENEVIE 135


>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
 gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLIVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G+ + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter sp. ADP1]
          Length = 228

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+    +  + R      GF V       EA E    +  PN +++D  +  + 
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFL-QRKPNLMILDLMVPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+    +D+ +  +    +    + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GLTICRKVREQ---SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVL 116

Query: 119 QMQKSKDENQF 129
           +    K E + 
Sbjct: 117 RRLDRKAEPEQ 127


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++  +     GF     T   +A    E E   +++++D  +  +  
Sbjct: 3   KQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEP-FDFILLDIMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  IEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRT 121

Query: 122 KSKDEN 127
             + + 
Sbjct: 122 SKEQQE 127


>gi|220904004|ref|YP_002479316.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868303|gb|ACL48638.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 259

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           SLLLV+ +  +           G+ +  A +     E        + +V+D  + G+   
Sbjct: 4   SLLLVEDNEDILANLYAYLEPLGYTLDCARNGKAGLEMALGRG-FDCIVLDVMLPGMDGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    +   V  L         +AG  AGA+ +L+KPF  + L   +R L + 
Sbjct: 63  SLCRRLRQEYRVS-TPVIMLTARDAVADRVAGLEAGADDYLVKPFALKELEARIRALLRR 121

Query: 121 QKSKDEN 127
              +  N
Sbjct: 122 GHLQGSN 128


>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 235

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+          +     G+    A +  EA E  E E+  + +++D  + G+ 
Sbjct: 1   MTRILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYE-EMEFDLVLLDLMLPGIS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R+M     V +  +  +     +I G   GA+ ++ KP++   L   +  + + 
Sbjct: 60  GTTLC-RRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRR 118


>gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58]
 gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 456

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    +A   C++E   + +++D  M G+  F
Sbjct: 4   RVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALAICDEE-QVDIILLDIMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKANPNTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +    
Sbjct: 123 KAVSDELRLRAE 134



 Score = 58.7 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/129 (10%), Positives = 38/129 (29%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            +L+ D     ++            V   T    A            ++++ + E     
Sbjct: 156 RVLVADGRASSQERIIRALKPV-AEVDAVTEPQAALLKAASSP-FELVIVNSNFEDYDPL 213

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R +     + +  +  +   E +      G N ++L+P +   L        + 
Sbjct: 214 RLCSQFRSLERTRFLPLLLVAEQGADEMVARALDLGVNDYILRPIDPNELVARSLTQIRR 273

Query: 121 QKSKDENQF 129
           ++  +  + 
Sbjct: 274 KRYNEHLRL 282


>gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
 gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti AK83]
          Length = 455

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CEK  + + +++D  M G+  F
Sbjct: 4   RILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPV-DLVLLDIMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KNVSDELRLRA 133



 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
           S+LLVD     ++            V   +    A      E   + ++++ + +     
Sbjct: 155 SVLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFKA-AESSFDLIIVNANFDDYDPL 212

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     + +  +  + + E+++     G   ++++P +   L      L Q+
Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVAR--SLTQI 270

Query: 121 QKSKDENQFLDAI 133
           ++    ++   ++
Sbjct: 271 RRKHCNDRLRASV 283


>gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 227

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ V  A +  EA     K+  P+ +++D  M
Sbjct: 1   MKKKDIRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAV-KVAKKKSPHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            G+        +R++P   D  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PGMDGIEACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKV 119

Query: 115 RELPQMQKSKD 125
           + L +  + ++
Sbjct: 120 KALLRRFRDEE 130


>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 233

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+VD    +  +      D GF +       EA E  E+    + +++D  M  + 
Sbjct: 1   MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         + ++  +      + G   GA+ ++ KPF  E L   ++   + 
Sbjct: 61  GLELCRRVRDQLKA-PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRR 119

Query: 121 QKSKDEN 127
           +K    N
Sbjct: 120 EKRHQMN 126


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD   ++ K  +      G  V  A    EA E   +    + +++D  +     
Sbjct: 3   NKVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDY-DIILLDVMLPELNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    +DV +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQMIREK---SDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIR 118

Query: 120 MQKSKDENQ 128
             K + + Q
Sbjct: 119 RTKGRKQEQ 127


>gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 247

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD   +VR++     +  GF V    +   A +   ++  P  +V+D  M  +  
Sbjct: 3   QTILIVDDDPVVRELVSEYLHGRGFNVATLENGL-ALQRRLQQERPALVVLDIMMPELDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + +
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 122 KS 123
            S
Sbjct: 122 GS 123


>gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 231

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  + +H F    F V    +  E        L P+ +V+D  + G+  
Sbjct: 3   RKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLART-LHPDLIVLDLMLPGLDG 61

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++ PL + + V  L  + D    I G   GA+ +++KPFN + L   ++ + +
Sbjct: 62  LSINRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILR 121

Query: 120 MQKSKDENQ 128
             + +   +
Sbjct: 122 RTEQEPAQR 130


>gi|153806265|ref|ZP_01958933.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185]
 gi|149130942|gb|EDM22148.1| hypothetical protein BACCAC_00520 [Bacteroides caccae ATCC 43185]
          Length = 1330

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P+ ++ D  M  +  
Sbjct: 1063 QRILIVEDNDELRSYLVSSLSSM-YHVQACGNGREAL-IIAKEFWPDLILSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    D   ++ G   GA+++++KPFN   L+ ++  L  
Sbjct: 1121 DELCVAIKNDIETSHIPVLLLTALGDENNILDGMSIGADAYIVKPFNVRILKASIANLLA 1180

Query: 120  MQKSKD 125
             +    
Sbjct: 1181 NRALLR 1186


>gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 240

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+     R +           V  A    E  E    +   + +V+D  + G    
Sbjct: 7   SILVVEDDRETRALIAKYLRANNCNVATAADGRE-MERWIADHRVDLVVLDVMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L    D    I G   GA+ +L KPFN   L   +R + + 
Sbjct: 66  SLCRKIRANSA---LPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRR 122

Query: 121 QKS 123
           Q S
Sbjct: 123 QAS 125


>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
 gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +   +  + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|220906498|ref|YP_002481809.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219863109|gb|ACL43448.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 120

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ +    ++      D G+ V  A +  EA +   K   P+ +V D  M  + 
Sbjct: 1   MSTVLVVEDTPSELELISSYLRDSGYRVLSAANGKEALDQAMKHH-PDVVVTDVVMPEMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E   ++++ P   +V +     +      +   + GA+ ++ KPFNRE L  A+R L 
Sbjct: 60  GFELCRNLKKNPATQNVPIVICSSKNQELDRLWALKQGADGYITKPFNREDLVRAVRSLL 119


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    + +      +  G++V  A+   +A E    E   + +++D  +  +   
Sbjct: 2   RILLIEDEATLARQLADTLSQAGYVVDHASDGIDA-EHLGTENPYDAVILDLGLPKLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  V V  L     + + + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  TVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRR 118


>gi|302037676|ref|YP_003797998.1| chemotaxis regulator CheY [Candidatus Nitrospira defluvii]
 gi|300605740|emb|CBK42073.1| Chemotaxis regulator CheY [Candidatus Nitrospira defluvii]
          Length = 123

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD S  +R++        G+ V EA +  EA         P+ +V D +M  +  
Sbjct: 3   KTVLVVDDSPTMRQMVAFTLTSAGYQVVEAGNGKEAVGKVNGGAKPDLVVTDLNMPEMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              I  +R+MP      +  L  E   +K  AG  AGA  +++KPFN E +   ++++ 
Sbjct: 63  ITLIKEIRKMPALKFTPILMLTTEASDDKKKAGQAAGATGWIVKPFNPEQMMAVIKKVL 121


>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR+  R      G+ V  A+   EA E    E  P  L++D  M  + 
Sbjct: 1   MK-ILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSEN-PELLILDVMMPNMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         +  L         +AG  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLEVCRTLRSEGWDRS--ILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLV 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRAAA 121


>gi|218439228|ref|YP_002377557.1| AraC family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218171956|gb|ACK70689.1| two component transcriptional regulator, AraC family [Cyanothece
           sp. PCC 7424]
          Length = 265

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++   +   + +      GF +  A    +  +   +E LP+ ++ D  M  + 
Sbjct: 1   MTRILLIEDDQLNCTLLQECLESEGFHIISAEDGFKGLQQA-REFLPDLILCDIIMPELD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ P    +   +L  +    +   G   GA+ +L KP     +  A+    
Sbjct: 60  GYSVLLQLRQDPSTAFIPFIFLTAKTSKAEYRRGMELGADDYLTKPLTAHEVIAAVETRL 119

Query: 119 QMQKSKDE 126
           + +   + 
Sbjct: 120 ERKAMLER 127


>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD     R          G+ V  A    EA    E    P+ +V D  M  +   
Sbjct: 22  TILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEA-YHPDLIVTDIVMPRMNGY 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  VRQ P    + V  L      ++ I G ++G + +L KPF  E L  A+R L + 
Sbjct: 81  ELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLLER 140

Query: 121 QK 122
            +
Sbjct: 141 SQ 142


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L++D   I+ K  +      G+    A    E       E   + +++D  +     
Sbjct: 3   KKILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHY-DLIILDIMLPKING 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + D    I G   GA+ +L KPFN   L+  ++ + +
Sbjct: 62  LEVCRQVREQSS---VPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 53/129 (41%), Gaps = 5/129 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+++    ++ +        G+ VF   +  +  +   +E  P  +++D  +  
Sbjct: 1   MKKSKILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIA-REEQPELIILDLMLPH 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +++     D+ V  +  + +    + G   GA+ +++KPF+   L   ++ 
Sbjct: 60  MDGLEVCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKA 119

Query: 117 LPQMQKSKD 125
           + + +   D
Sbjct: 120 VLRREYRSD 128


>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
 gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
          Length = 1342

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R +   LF+   + V EA    E  +   KE+ P+ ++ D  M  +  +
Sbjct: 1093 KILIVEDNEELRGLLVRLFSKV-YSVCEAQDGEEGLDK-TKEIQPDIVLSDIMMPKMSGI 1150

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  + G + GA+ ++ KPFN + L      L   
Sbjct: 1151 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1210

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1211 RKLLQK 1216


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+ V  A           +E  P+ +++D  + G+    
Sbjct: 5   ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAA-RESNPDLVILDWMLPGISGPE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G  V +  L  + +    ++G  AGA+ +++KPF+ E L   +R   +  ++
Sbjct: 64  ICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQT 123

Query: 124 KDEN 127
           +D N
Sbjct: 124 EDPN 127


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+V+    + ++        GF V  A    EA     +   P+ +V+D  +     F
Sbjct: 13  TLLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARH-RPDLVVLDVMLPDFDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         + YL      E  + G   G + ++ KPF+ E +   +R + +  K
Sbjct: 72  EVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSK 131


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R +      + G+ VF A +        +       ++  + +++D  +
Sbjct: 20  RILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML 79

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                L+    +R    G  + +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PEVNGLDLCRFLR--YQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARC 137

Query: 115 RELPQMQK 122
           R L + Q+
Sbjct: 138 RALLRRQQ 145


>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 230

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + VF+     EA +  +K    +  ++D  M  +  F
Sbjct: 4   NILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHY-DLAILDVMMPDLDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 63  SLLKKIREDYFF---PVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRR 119

Query: 121 QKSKDENQ 128
               + N+
Sbjct: 120 YTRYNTNE 127


>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 254

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908]
 gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 241

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G+ + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 231

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    R    + G++V  A    E   +  +E   + +++D  + G+  F
Sbjct: 2   KVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGL-YFAQETPYDLILLDVMLPGMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R++   + V V  L      E  + G   GA+ +L KPF+   L   +  L + 
Sbjct: 61  -QLLRELRKKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARR 117


>gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
          Length = 240

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60
             +LL++    + ++     +   + V  A +     +  + KE   + +V+D  +  + 
Sbjct: 3   KQILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMD 62

Query: 61  E--FIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  VR         V +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 63  GMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRA 122

Query: 117 LPQMQKSKDE 126
           + +  ++ ++
Sbjct: 123 VLRRHETPNQ 132


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L+VD   ++ K  R      G  V  A    EA     K+   + +++D  +    
Sbjct: 1   MASVLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLA-KQKEYDVVLLDVMLPKYD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +++ +  L  + +    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GYEVCQAIRE---FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116

Query: 119 QMQKSKDENQF 129
           +   +  +N+ 
Sbjct: 117 RR--NSKKNKR 125


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA E  +     + +++D  +  +  
Sbjct: 3   RKILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTY-DMVLLDLMLPKIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    ++V +  L  + D    I G   GA+ ++ KPFN   ++  M+ + +
Sbjct: 62  IAVCQQVRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFR 118

Query: 120 MQ-KSKDENQFLDA 132
               S+ E +  +A
Sbjct: 119 RSGGSESEGRQSEA 132


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE------KELLPNYLVIDESM 56
            +L+V+   ++R +      + G+ V  A+    A    +       E   + +V+D  +
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                L+    +R       V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQ 121
           R L + Q
Sbjct: 138 RALIRRQ 144


>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 226

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    ++K   HL     +   +A     A E   +E   + +++D ++    
Sbjct: 1   MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYREN-FDLVILDLNLPKQD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  ++      DV V  L    +    I G   G + +L KPF+   L   ++ + 
Sbjct: 60  GFSVLKEIKNRE---DVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVL 116

Query: 119 QM-QKSKDENQFLD 131
           +  +K + E + L 
Sbjct: 117 RRYRKGRGEEEILK 130


>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
 gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
          Length = 226

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHV 66
           VD    + ++   +    GF V  A    E  +    E   + +++D  M  +  F A +
Sbjct: 2   VDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRL-AEQSFDLVLLDVMMPKLNGF-AML 59

Query: 67  RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126
            ++    D  V  L    D +  + G  AGA+ +L KPF+   L   +R + +  +S   
Sbjct: 60  TKLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPP 119

Query: 127 NQ 128
            +
Sbjct: 120 QR 121


>gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 276

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +  R      G  V  A    +  +        + LV+D  + G+  F 
Sbjct: 3   VLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGT-FDALVLDVMLPGLDGFE 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              R    G  V +  L         + G  +GA+ +L+KPF    L+  +R L
Sbjct: 62  ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRAL 115


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R++ R +    GF V EA     A +  E     + +++D  M  + 
Sbjct: 1   MAVILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTH-IDLIILDVMMPKMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR     TD+ +  L  + +    + G  +GA+ +L+KPF    L   ++ L 
Sbjct: 60  GFEVSEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALL 116

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 117 KRYRITAE 124


>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 225

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + E+  + +++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ +  V  +    F   G          E  +   KE   + +++D  + G+ 
Sbjct: 10  MK-VLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRY-KEGEWDLVILDWMLPGMD 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +     T + +  L  +      + G   GA+ ++ KPF+   L   +R + + 
Sbjct: 68  GVTICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRR 127

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 128 YQGEKNN 134


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQFLDA 132
              S+   +  DA
Sbjct: 119 RHYSQPAQEVNDA 131


>gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 229

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    + ++  +      + +  A     A +   +E + + +++D  + G   
Sbjct: 3   KKILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKL-RETVYDLVILDLMLPGIQG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R         +  +  + +    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  LEICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 243

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++++ R      GF V    SV  A E   +   P  LV+D  + G    
Sbjct: 9   RVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESA-EAVLQTWGPQLLVLDWMLPGKNGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      + +  L    +    + G  +GA+ +L KPF+   L   +  L + 
Sbjct: 68  AWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRR 127


>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 241

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQM  G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 66  SICRRLRQM--GNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123

Query: 121 Q 121
           Q
Sbjct: 124 Q 124


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 13  KRVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNW-DALILDLMLPGVDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 72  LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRA 131

Query: 122 KSKDENQFLDA 132
            +  ++  ++A
Sbjct: 132 DAMAKDARMEA 142


>gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 228

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +   + G+ VF A +  E  +  +K+  P+ +++D  M
Sbjct: 1   MKDAIAKILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKK-PDLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R++P      + +L    +   MIAG  AGA+ ++ KP     L   +
Sbjct: 60  PVMDGIEACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKV 119

Query: 115 RELPQM 120
           + L + 
Sbjct: 120 KSLLRR 125


>gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101]
          Length = 240

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE 61
            +LLV+    + +    L    G +V   +    A      +    +  ++D  +  +  
Sbjct: 4   RILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQLSG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  V V  L         + G  AGA+ +L KPF  E L   +R L +  
Sbjct: 64  VELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRALQRRH 123

Query: 122 KSKDENQF 129
               E Q 
Sbjct: 124 PGYREPQL 131


>gi|268317350|ref|YP_003291069.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Rhodothermus marinus DSM 4252]
 gi|262334884|gb|ACY48681.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Rhodothermus marinus DSM 4252]
          Length = 461

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R+  R +    G+ V EA    EA E   +E   + +++D  M     +
Sbjct: 4   TILVVDDERSIRRTLREILEYEGYAVEEAADGDEALEKL-REGRYDLVLLDIKMPRRDGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +       ++ V  +      E  +   R GA  F+ KP +   L   +R   + 
Sbjct: 63  EVLRTLAAEQ--PELPVVMISGHGTIETAVEATRLGAFDFIEKPPDLNRLLLTVRNALER 120

Query: 121 QKSKDENQFLDAI 133
            + + EN+ +  +
Sbjct: 121 GQLQTENRRIRQV 133


>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +       F V EA    +A +          +++D  M  +   
Sbjct: 5   KVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     ++V +  L    D    + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCREIR---GVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121

Query: 121 QKSKDENQFLDA 132
             +   ++ + A
Sbjct: 122 SNALAPDKIMTA 133


>gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
 gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
           8106]
          Length = 329

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      +V   +    G+ V  AT   +A E  +    P+ +++D  M  +    
Sbjct: 10  VLVVDDITRNLQVLADMLEQVGYEVTFATDGQQALERAKVAE-PDLILLDLMMPKMNGLE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V +L    + E ++   + GA  ++ KPF    L   +R   +++
Sbjct: 69  VCQKLKNDEKLCEIPVIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLARVRVHLELK 128

Query: 122 KSKDEN 127
            +KDE 
Sbjct: 129 YTKDEL 134


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    +A E    E  P+ +V+D  +  +  F
Sbjct: 14  TVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSES-PDLIVLDVMLPKLDGF 72

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 73  AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 129


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    + +      +  G+ V  A +  EA +  E E  P+ +++D  +  +
Sbjct: 1   MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIE-EKTPDLILLDLMLPDM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R      +  +  +  + +    I G   GA+ +++KPF+       +  +
Sbjct: 60  SGLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAM 119

Query: 118 PQM 120
            + 
Sbjct: 120 LKR 122


>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 241

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA    EA     +      +++D  +  +    
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDY-ACILLDLMLPEMDGIT 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      +  +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  + 
Sbjct: 64  VASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQV 122

Query: 124 KDENQ 128
               Q
Sbjct: 123 ATAEQ 127


>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
 gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTAVD-AGLQGGIDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|16332199|ref|NP_442927.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1000118|gb|AAB41278.1| orf 421 [Synechocystis sp. PCC 6803]
 gi|1653828|dbj|BAA18739.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 421

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV 59
           M ++L+V+   I+R++     +   + + EA +   A       E++P+ ++ D  M  +
Sbjct: 1   MSTILVVEDEAIIRELIGETLSLENYKILEAENGAVALGLLNSLEVMPDLIICDVMMPEM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                I  +++      +   +L      +    G  +GA+ +L+KPF +E L  A+   
Sbjct: 61  DGHGLITALQKNAKTAAIPFIFLTALGTMQDFRKGMNSGADDYLIKPFKQEDLLNAVNSR 120

Query: 118 PQMQ 121
            Q Q
Sbjct: 121 LQKQ 124


>gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021]
 gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
 gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Sinorhizobium meliloti 1021]
 gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium meliloti BL225C]
          Length = 455

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CEK  + + +++D  M G+  F
Sbjct: 4   RILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPV-DLVLLDIMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KNVSDELRLRA 133



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
           S+LLVD     ++            V   +    A      E   + ++++ + +     
Sbjct: 155 SVLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFEA-AESSFDLIIVNANFDDYDPL 212

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     + +  +  + + E+++     G   ++++P +   L      L Q+
Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVAR--SLTQI 270

Query: 121 QKSKDENQFLDAI 133
           ++    ++   ++
Sbjct: 271 RRKHCNDRLRASV 283


>gi|319903038|ref|YP_004162766.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
 gi|319418069|gb|ADV45180.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
          Length = 1351

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            LLLV+    +R+      +   + V       +A     K++ P+ ++ D  M      E
Sbjct: 1107 LLLVEDDEDMREYLTGSLSAE-YEVVGVPDGGKALALA-KDINPDIIISDIVMPVLEGDE 1164

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L    + E +I G  AGAN +++KPF+   L+  ++ + Q +
Sbjct: 1165 LCRILKSSVDTSHIPVILLTALSERENIIFGLEAGANDYIIKPFDLAVLKARIKNILQNR 1224

Query: 122  KSKDEN 127
            +   E 
Sbjct: 1225 QHLREL 1230


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++        G+ V EA +  +A       L P+ +V+D  + G+  
Sbjct: 13  RRVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARA-LDPDVIVLDLGLPGLDG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +D +V  L    D    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 72  VEVCRQIR---TFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLR 128

Query: 120 MQKSK 124
             + +
Sbjct: 129 RPRQR 133


>gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1224

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +  D G+ V  A +  EA +    E   + +++D  M  +  
Sbjct: 1103 QRVLLVDDDIRNLYSLSAVLEDSGWEVRTAANGREALDILSSEGAFDLVLMDIMMPEMDG 1162

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L  +   +       AGAN +L KP +   L+  ++   
Sbjct: 1163 FEAMRRIRGQAAFEKMPIIALTAKAMRDDRAQCVAAGANDYLSKPVDPSKLKAIVKMWL 1221



 Score = 55.2 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+++       V + L  +FGF      S   A  + E+   P  +V+D  +      E
Sbjct: 831 LLIIEDHPEFSTVLKDLATEFGFEAACVHSAAAAHRYLER-WTPASIVLDLGLPDSPGEE 889

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
            ++ ++  P    + V+ +  +   E ++    AGA+ F+ KPF R+ +
Sbjct: 890 LLSWLKAQPHTAQIPVHVISGK---ENVVMDELAGASEFIAKPFGRDRM 935



 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-------EKELLPNYLVIDESM 56
            +L+++   + R +    F +       A+S  EARE+         +      + +D   
Sbjct: 954  VLIIEDDEVQRDLIEVSFREQEIACDLASSAVEAREYLAAMEQTPARHYGAMVVDLDLPD 1013

Query: 57   EGVLEFIAHVRQMPLGTDVFVYYLLMEV 84
                + +  + Q   G+ + +       
Sbjct: 1014 CDGFQLVDELHQSTNGS-IPIIVYTARD 1040


>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 229

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R         + +L         I G   G + +++KPF+ + L+  ++  
Sbjct: 59  DGFQICQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAH 115

Query: 118 PQMQKSKDENQF 129
            + +K    N  
Sbjct: 116 LRREKRVPLNNR 127


>gi|167765067|ref|ZP_02437180.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183]
 gi|167696695|gb|EDS13274.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183]
          Length = 1350

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R+  R       + V   ++   A     KE  P+ ++ D  M  +  
Sbjct: 1089 QKILIVEDNDELREYLRRTL-AENYHVQVCSNGKSALCIV-KEYFPDLIISDIMMPEMRG 1146

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V+     + + V  L      + +I G + GA+ +++KPFN   LR  +  L  
Sbjct: 1147 DELCQKVKNDIDTSHIPVILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLA 1206

Query: 120  MQKSKD 125
             +    
Sbjct: 1207 NRALLR 1212


>gi|94264449|ref|ZP_01288238.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455139|gb|EAT05361.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 391

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      ++   +  D G  VF AT   EA   C     P+ +++D  M  +   
Sbjct: 11  RVLVVDDQPPNIQLLAEVLAD-GHQVFIATGGAEALAICRAPKPPDLVLLDVVMPEMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V ++      E+ + G  AGA  ++ KP++   +R  +R   + 
Sbjct: 70  EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQLE- 128

Query: 121 QKSKDENQFLD 131
              + +N+ L 
Sbjct: 129 --LQSKNRILA 137


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 119 RHYSQPAQE 127


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +     +A +  E E   + +++D  M  +   
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLE-EKEFDLIILDIMMPNMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 68  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124


>gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 229

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+      + G+ + +A+   EA E   +    + +++D  +  +   
Sbjct: 6   KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETL-RNTTIDLIILDIMLPKMDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + + +L  + +    I G  +GA  ++ KPFN   L   ++   +  +
Sbjct: 65  EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123

Query: 123 SKDENQ 128
                +
Sbjct: 124 VYQTEE 129


>gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++V+    +  V +      G+          A +       P   ++D  +  + 
Sbjct: 1   MTRIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATP-PELTLLDIMLPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R     +   +  L   ++    + G   GA+ ++ KPF+   L   +R + + 
Sbjct: 60  GIEVLRRAREHTSH-PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRR 118

Query: 121 QKSKDE 126
            +   E
Sbjct: 119 TEPPAE 124


>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALD-AGMQGGIDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 252

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 12/131 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54
            +L+V+   ++R +      D G+ +        A    ++E           + LV+D 
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79

Query: 55  SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            +     L+    +R    G  + +  L  +      + G   GA+ +L KPF+   L  
Sbjct: 80  MLPQVNGLDICRLLR--YQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137

Query: 113 AMRELPQMQKS 123
             R L + Q  
Sbjct: 138 RCRALIRRQNL 148


>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
 gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
          Length = 240

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +R++ R       F V EA     A E   ++   + +++D  M G+  +
Sbjct: 6   TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEIL-RQGQVDLVILDVMMPGLDGW 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   ++V + +L    +    + G   GA+ +++KPF+   L   ++ L + + 
Sbjct: 65  TTC-RKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRS 123

Query: 123 SKDENQ 128
           S    +
Sbjct: 124 STPPQR 129


>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 253

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    +A E    E  P+ +V+D  +  +  F
Sbjct: 12  TVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSES-PDLIVLDVMLPKLDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 71  AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 127


>gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2]
 gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
 gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
          Length = 227

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+ +  +        +  G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDVMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +L+KPF    L   +  + + 
Sbjct: 61  ALCRRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119

Query: 121 QKSKDENQFLDA 132
            +     +   A
Sbjct: 120 AQGGGRRELSVA 131


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL D    + ++ +  F+  G+ V  A +  EA + C    +P+ +++D  M  + 
Sbjct: 1   MVKLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALD-CMAMEMPDIVILDVMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++ +   + V V  L  + D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 60  GF-DTLKHIRAKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118

Query: 121 QKSKDEN 127
              + ++
Sbjct: 119 ATQEKDD 125


>gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
 gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
          Length = 244

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  + E  P+ +++D  +     
Sbjct: 13  KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VRQ     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 72  LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 128

Query: 120 MQKSKDENQ 128
            ++   +++
Sbjct: 129 RREITQKSK 137


>gi|258592344|emb|CBE68653.1| Response regulator receiver modulated metal dependent
           phosphohydrolase (fragment) [NC10 bacterium 'Dutch
           sediment']
          Length = 336

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD   +   +   +    G+ +  A     A E       P+ +++D  M G+  F
Sbjct: 11  TILVVDDQQVNCTLVETILAPQGYEIISALDGERALELVAARP-PDLILLDVIMPGMSGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + +  +    D +  I G   GA+ FL KPF+   L    R L ++
Sbjct: 70  EVCTRLKENERTRLIPIVMVTSLSDLQDRIRGIEVGADDFLSKPFHPAELSARARSLLKL 129

Query: 121 QKSKDENQ 128
           ++  DE +
Sbjct: 130 KQFTDELE 137


>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + ++  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
 gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase
           [Oscillatoria sp. PCC 6506]
          Length = 315

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD      ++   +    G+    ATS  +A E  +    P+ +++D  M  +  LE
Sbjct: 11  ILVVDDVTENLQLIALILEKRGYETTFATSGKQALERVQTAN-PDLILLDFMMPHMNGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   ++ + +L    + E +I     GA  ++ KPF+   L   +R   +++
Sbjct: 70  VCEQLKANPDVAEIPIIFLTASHEQEHLIQAFEKGAVDYITKPFSTAELLVRVRTHLELK 129

Query: 122 KSKDENQ 128
             +++ +
Sbjct: 130 YMREQLK 136


>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 244

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + +      G+ V  A    EA +  + E  P+ +++D  +     
Sbjct: 13  KKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVD-EFNPDLMILDLMLPKKDG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VRQ     D+ +  +  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 72  LEVAREVRQS---HDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLR 128

Query: 120 MQKSKDENQ 128
            ++   +++
Sbjct: 129 RREITQKSK 137


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+++   ++ +  +  F   G+ V  A       +     + P  +V+D  +      
Sbjct: 6   TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALA-IQPALIVLDLMLPKVNGY 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+  L  ++ +  L  +     ++ G + GA+ ++ KPF+ + L   +    + 
Sbjct: 65  EICRFLREEKL--EMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122

Query: 121 QKSK 124
           Q+ +
Sbjct: 123 QRKQ 126


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    + KV      +  + V  A    +  EF E  L  + +++D  +    
Sbjct: 1   MMRILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEA-LAYDLILLDVMLPKLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +RQ   G  + V  L  +   E  + G   GA+ +++KPF+   L   +R L 
Sbjct: 60  GIGLCQRIRQ--SGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF V  A     A    +    P+ +V+D  +  +  F
Sbjct: 15  KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQAS-RPDLIVLDVMLPDMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D    I G   G + ++ KPF  E +   +R + +   
Sbjct: 74  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133

Query: 123 SKDEN 127
             +E+
Sbjct: 134 GSEED 138


>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57
           M S+L+VD    +  +      + G+ V +A    EA +       + + +++D  M   
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R+    + + +  L  + +    I G   GA+ +++KPFN   L   ++ L
Sbjct: 61  NGIDTCRRIRE---TSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTL 117

Query: 118 PQM 120
            + 
Sbjct: 118 LRR 120


>gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 227

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LL+D    +  + +      GF    A       E   ++   + +++D  M  + 
Sbjct: 1   MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTY-DLILLDVMMPKMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +    +  V  L  + +    I G   GA+ ++ KP     +   +R + + 
Sbjct: 60  G-IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR 118

Query: 121 QKSKDENQ 128
            +  D  Q
Sbjct: 119 TQPSDNAQ 126


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   PN L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG--PNVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G    +A    EA +  E E   + +++D  M  +   
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLE-EKEFDLIILDIMMPNLDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  EACMKIRED-RNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119


>gi|307155194|ref|YP_003890578.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985422|gb|ADN17303.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 358

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L VD +     + +      G+ V        A    +    P+ +++D  M G+  F 
Sbjct: 12  ILAVDDNPDNLFLIKLALEQEGYKVHLVEDGLTALAQIQYSP-PDLILLDVMMPGIDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ P    + +  +    +   +I G   GA+ F+ KP   + L+  +R L +++
Sbjct: 71  VTRRIRQNPNIPFIPILLITAY-EEPSLIQGLDVGADEFIRKPIQIDELQARVRSLLRLK 129

Query: 122 KSKDENQ 128
           +S D+ +
Sbjct: 130 QSIDQRE 136


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLVD    +    +      G+ V  A S  EA    + +  P+ +++D  M  +   
Sbjct: 7   TILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL--IQSKRQPSLIILDVMMPEMDGI 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    T   + +L         I G  AG + +LLKPF+   L+  +    + 
Sbjct: 65  EVCKQLRE---TTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRR 121

Query: 121 QK 122
           ++
Sbjct: 122 EQ 123


>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 228

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDKD--IDIILLDIMMPNI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R         + +L         I G   G + +++KPF+ + L+  +   
Sbjct: 59  DGFQVCQKIR---DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAH 115

Query: 118 PQMQKSKDENQF 129
            + +K    N  
Sbjct: 116 LRREKRVPLNNR 127


>gi|78221776|ref|YP_383523.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Geobacter metallireducens GS-15]
 gi|78193031|gb|ABB30798.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter metallireducens GS-15]
          Length = 457

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  H++R          G+ V  A +  +A      E  P+ +++D  + G+  
Sbjct: 4   TKILVVDDEHLIRWSLEQNLKKQGYEVVSAGNGEDALRLVRDE-QPDLVLLDIQLPGISG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +      ++ V  +      E  +   R GA  ++ KPFN + +   +R+  +  
Sbjct: 63  LDVLEKIKEHDEEIIVIMVTAHGALETAVHAMRLGAFDYINKPFNLDEMAIVIRKALETS 122

Query: 122 KSKDENQFL 130
             + E Q L
Sbjct: 123 DLRREVQRL 131


>gi|319940603|ref|ZP_08014946.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805969|gb|EFW02727.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis
           3_1_45B]
          Length = 241

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLEF 62
           +L+VD   ++R++        G+ V  A     A E   K  + PN +++D  M  +  F
Sbjct: 8   ILVVDDESMIRRLVLANLERAGYDVMSAADGIRALEVYAKAPVKPNLVILDVMMPEMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V ++  + D    + G   GA+ ++ KPF+ E L   +R +     
Sbjct: 68  ECARRLREK-KDVPVIFMTAKTDSASKLRGFDLGADDYVCKPFSMEELLARIRAILHRSS 126

Query: 123 SKD 125
              
Sbjct: 127 KAR 129


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59
           M  +L+ +    +R          G+ V EA     A +  E+     +  ++D  M G+
Sbjct: 1   MKKILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGI 60

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R    G  + +  L  +      + G   GA+ ++ KPF+   L   +  L
Sbjct: 61  DGFQVCKELRNRNGG--IGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSL 118

Query: 118 PQM---QKSKDENQFLDAI 133
            +     +S  EN F + +
Sbjct: 119 YRRVALAQSHSENNFKEEL 137


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +V+    ++++ ++     GF V    +  +       E +P+  ++D  + G+    
Sbjct: 6   IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGED-LLAYSSENIPDLFILDIMLPGIDGLE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++Q      + +  L  + +    + G   GA+ ++ KPF+   L   ++ L +  
Sbjct: 65  VCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFRRV 124

Query: 122 KSKDE 126
            +  E
Sbjct: 125 NTATE 129


>gi|254413334|ref|ZP_05027105.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179954|gb|EDX74947.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 864

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L +D +     +   + +  G+ +    +   A +       P+ +++D  M  +   
Sbjct: 12  TILTIDDTPDNLHLLTEMLSAQGYKIRIIPNGRLALKSIANNP-PDLILLDIIMPDMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ V +L    +    +     G   ++ KPF  + +   +    ++
Sbjct: 71  QVCQQLKASPKTQNIPVIFLSGLNETFDKVKAFEVGGVDYITKPFQVQEVLARVESQLRL 130

Query: 121 QKSKDEN 127
           Q+ + + 
Sbjct: 131 QRLQKQL 137


>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 234

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  + +  +A +  + E  P  +++D  + G+  F
Sbjct: 5   KILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMEN-PKLILLDLMLPGLDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V++     ++ +  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123


>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 244

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + ++ R      GF V EA    +A          +  V+D  + G+   
Sbjct: 17  TVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLL---PQADVAVLDWMLPGMTGL 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V +  L      E  + G   GA+ ++ KPF+   +   ++ L +   
Sbjct: 74  ELARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMG 133

Query: 123 SKD 125
            ++
Sbjct: 134 VRE 136


>gi|86157260|ref|YP_464045.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773771|gb|ABC80608.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 466

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR   R +    G  V EA     A E    +  P  ++ D  M  +   
Sbjct: 12  RVLVVDDDPGVRYTLREILASEGLEVEEAADGEAALEKLGAQPFP-LVLTDLRMPRLDGM 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         V  +       + +   +AGA  +  KPF  E L   +R   +  +
Sbjct: 71  ALLRRITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVEAVR 130

Query: 123 SKDENQFLD 131
             DEN+ L 
Sbjct: 131 LADENERLA 139


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 119 RHYSQPAQE 127


>gi|67921315|ref|ZP_00514834.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67857432|gb|EAM52672.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 122

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD ++  RK+   L    GF      S   A E+ E    P+ +++D  M    
Sbjct: 1   MKTILVVDDTNAQRKLISALLTHAGFETANVESAKLAWEWLENNDFPDLIILDIIMPEET 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R  P   D+ + +   + +          G N ++ KPF    L  A+ +  
Sbjct: 61  GLELCRKIRANPKWKDIPIVFCSSKSEEFDRFWALHQGGNDYITKPFAPNELIHAVSKYI 120


>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LL+V+    +R + R      GF + +A    +A      E  P+ +++D  + G+  
Sbjct: 4   RTLLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSE-QPDLIILDLMLPGIDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R     +D +V  L  + +    + G   GA+ +L KPF+   L   +R + +  
Sbjct: 63  LEVCHRLR-TFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRP 121

Query: 122 KSKD 125
           +  D
Sbjct: 122 RHAD 125


>gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
          Length = 1021

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL D +H +R     L  D  + V        A E  +K   P+ ++ D  M     L 
Sbjct: 645 ILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKK-RRPDLVLSDVMMPRLDGLG 702

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-----E 116
            +  +R  P   D+ V +L      E  + G  AGA+ +L KPF+   L   +R      
Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762

Query: 117 LPQMQKSKDE 126
             +    + E
Sbjct: 763 AIRRTALRTE 772


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF V  A     A    +    P+ +V+D  +  +  F
Sbjct: 15  KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQAS-RPDLIVLDVMLPDMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D    I G   G + ++ KPF  E +   +R + +   
Sbjct: 74  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133

Query: 123 SKDEN 127
             +E+
Sbjct: 134 GSEED 138


>gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 268

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL++    +R++        GF V +A    +  +    +  P+ +++D  +  V    
Sbjct: 5   ILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKG-QALALQYTPDLILLDLMLPNVDGLT 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  +      +  + G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALLRR 122


>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
 gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 240

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ +    +R + +       +MV  A +  EA +   +    N +++D  M  
Sbjct: 1   MKDIRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNY-NLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LMRR 120


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    + +         G+ V+      E  +  E E+ P+ +++D  + G   +
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVE-EIHPDLILLDIMLPGINGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    ++V +  +  + D    + G  +GA+ ++ KPF  E L   +R   + 
Sbjct: 64  EICRKIRQH---SNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRK 120

Query: 121 QKSKDENQFL 130
            K  +  + +
Sbjct: 121 SKQLNIIREI 130


>gi|194365077|ref|YP_002027687.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347881|gb|ACF51004.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 242

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD  + +R +        G+ V  A     A          + +V+D ++    
Sbjct: 7   MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADG-TAMRQLLDREHVDLIVLDLNLPRED 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++  V  L    +    + G   GA+ +L KPF    L   +R + + 
Sbjct: 66  GLTLC-RDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 124

Query: 121 QKSKDEN 127
            ++   N
Sbjct: 125 TEALPAN 131


>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 242

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA E  E E  P+ L++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVE-EYNPDLLILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120


>gi|39998006|ref|NP_953957.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984951|gb|AAR36307.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506947|gb|ADI85670.1| sigma-54-dependent transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 457

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  H++R          G+ V  A +  +A     +E  P+ +++D  + G+  
Sbjct: 4   TKILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIV-REEQPDLVLLDIQLPGISG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  +      ++ V  +      E  +   R GA  ++ KPFN + +   +R+  +  
Sbjct: 63  LEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMSIVIRKALETS 122

Query: 122 KSKDENQFLDA 132
             + E Q L +
Sbjct: 123 DLRREVQRLRS 133


>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
 gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
          Length = 260

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R    + GF V  A +  +      +E   + +V+D  M G    
Sbjct: 21  RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRE-RFDAVVLDVMMPGEDGI 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  + +    I G   GA+ +L KP+N   L   +  + + ++
Sbjct: 80  SILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRRE 139


>gi|325298664|ref|YP_004258581.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
 gi|324318217|gb|ADY36108.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            salanitronis DSM 18170]
          Length = 1327

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+    +R + R +    G++VFEA    EA E  +K   P+ ++ D  M G+  F
Sbjct: 1072 NVLIVEDDAHLRDLLRDILK--GYIVFEAADGKEALEKIKKTH-PDIILTDIIMNGMDGF 1128

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+  P  + + +  +  +   E  I  +  GANS+L KPF+   ++  +  L   
Sbjct: 1129 TFIQAVKSDPNISYIPLVVISAKNSVEDQIKASNLGANSYLTKPFHPLQIKSTIENLISR 1188

Query: 121  QKSKD 125
            Q+S  
Sbjct: 1189 QESLR 1193


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGV 59
           M  +L+++    +R + +    + G+ V  A +     E+        + +++D  +  +
Sbjct: 1   MQKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDI 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +  +R+      V V  +    +    + G   GA+ +++KPF+ + +   ++ +
Sbjct: 61  SGWSLLKTIREKSK---VPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAI 117

Query: 118 PQMQKSKDEN 127
                   E 
Sbjct: 118 LSRTYGASEE 127


>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 253

 Score =  139 bits (353), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    +A E    E  P+ +V+D  +  +  F
Sbjct: 12  TVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSES-PDLVVLDVMLPKLDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 71  AVCRRLRAESC---VPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRR 127


>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 242

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVE-EYNPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR 120


>gi|300727604|ref|ZP_07060993.1| transcriptional activator protein CopR [Prevotella bryantii B14]
 gi|299775124|gb|EFI71727.1| transcriptional activator protein CopR [Prevotella bryantii B14]
          Length = 233

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           + +V+    +         DFG+ +    +  EA    + +   + L++D  M G+  LE
Sbjct: 13  ICMVEDELNISDFVSRGLKDFGYEIDVFHNGQEAWNKLKADNRYDLLLLDIRMPGMTGLE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H R+        +  L      E ++ G  AGA+ +++KPF    L   ++ + +  
Sbjct: 73  ICQHYREKYGY-HTPILMLTALGTTEDIVMGLHAGADDYVVKPFKFAELIARIKAMLRRT 131

Query: 122 KSKDENQFL 130
           ++  +N  +
Sbjct: 132 QALQQNSLI 140


>gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 1136

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L VD   I  +V +++    G+ V  A +  EA      +  P+ +V+D  M G   L+
Sbjct: 699 ILAVDDEPINLQVLQNVLQPQGYRVTTARNGTEALRNV-AQDRPDLIVLDVMMAGLSGLD 757

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L        M+AG  AGAN +++KPF ++ L   +R L +  
Sbjct: 758 VARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLLEAS 817

Query: 122 KSK---DENQFLDA 132
           +++   +EN+ L  
Sbjct: 818 RARSRAEENRELKE 831


>gi|253732135|ref|ZP_04866300.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724090|gb|EES92819.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 188

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ +       F + EA++  EA E   +      +++D  +  +    
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNY-ACILLDLMLPEMDGIQ 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +         +  L  + +    + G  +GA+ +++KPF+   +   ++ L +  +S
Sbjct: 64  VATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122


>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + E+  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKID-EVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
 gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R          G+ V++A    E  +  EKE   +  ++D  M  +   
Sbjct: 10  NILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEP-IHLAIVDIMMPRMDGV 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      +  V  L  + +    + G   GA+ ++ KPF    L   +    + 
Sbjct: 69  TMTIKLRE-HHEFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRR 125


>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVRQDGPTALD-AGLQGGIDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEG 58
           M   +L+++    +  +     +  G+ VF A       +  E K+   + +++D  +  
Sbjct: 13  MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       R   +   V V ++         +AG  AGA+ +L KPFN E L   +R + 
Sbjct: 73  LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132

Query: 119 QM 120
           + 
Sbjct: 133 RK 134


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    + ++ R+   + G  V  + +  +A +        + L++D  + G+  F
Sbjct: 2   RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGE-FDALLLDVMLPGMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  V +  L        +I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 61  EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR 118


>gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 237

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++ ++D    +R++     +  GF V  A +  +A     ++  P+ L++D  M G    
Sbjct: 7   TVAVIDDDAEIRELLHAYLSQHGFRVVLAENG-DAVPSLLRDESPDLLILDIMMPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            +  R +   ++V +  L    D    I G   GA+ +L KPFN   L   ++ + +  +
Sbjct: 66  -SLCRDLRRHSNVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLRRMR 124


>gi|39995119|ref|NP_951070.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39981881|gb|AAR33343.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504149|gb|ADI82872.1| response receiver sensor histidine kinase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 516

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + +VD    +  + +    D G+    A    EA +  E+E   + +++D  M  +   
Sbjct: 5   KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERES-FDLVLLDIRMPRMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D+ V  +      +  +   + GA  ++ KPF+ + ++  +    Q  +
Sbjct: 64  EVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQFNR 123

Query: 123 SKDENQFLDAI 133
           ++ EN+ L  +
Sbjct: 124 TRLENERLQRV 134


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 124 DALARDSRIDA 134


>gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1347

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R+          + V EA +  +A E   KE   N ++ D  M  +   
Sbjct: 1100 SILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIM-KEQEINLILTDVMMPVMDGL 1157

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  + D E+ + G   GA+ ++ KPF+   +   +R L + 
Sbjct: 1158 QLCKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFRT 1217

Query: 121  Q 121
            +
Sbjct: 1218 R 1218


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  + +      G+ V  +    +A    + E   + +++D  +  +  F 
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENY-DMVLLDVMLPKIDGFS 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+    +DV +  +  + D    + G   GA+ ++ KPF    L   +R   +  
Sbjct: 65  VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRT 121

Query: 122 KSKD 125
               
Sbjct: 122 ALSS 125


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E       P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW--NEQPDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 115

Query: 119 QMQKSK 124
           +  K +
Sbjct: 116 RRVKKE 121


>gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
 gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
          Length = 1347

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R+          + V EA +  +A E   KE   N ++ D  M  +   
Sbjct: 1100 SILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIM-KEQEINLILTDVMMPVMDGL 1157

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  + D E+ + G   GA+ ++ KPF+   +   +R L + 
Sbjct: 1158 QLCKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFRT 1217

Query: 121  Q 121
            +
Sbjct: 1218 R 1218


>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +  + R      G+ V  A    +        L P+ +++D  +  +  
Sbjct: 3   KNILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALT-LNPDLVLLDVMLPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R       V +  L  + +    + G   GA+ ++ KPF    L   ++   +
Sbjct: 62  FQVCRKIRASSS---VPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLR 118

Query: 120 MQKS 123
             +S
Sbjct: 119 RTES 122


>gi|113474731|ref|YP_720792.1| response regulator receiver modulated serine phosphatase
           [Trichodesmium erythraeum IMS101]
 gi|110165779|gb|ABG50319.1| response regulator receiver modulated serine phosphatase
           [Trichodesmium erythraeum IMS101]
          Length = 378

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D    V+++ R +    G+ V  A++  E  +  +  L P  ++ D  M     +
Sbjct: 4   KILVIDDDTTVQELLRRVLGKQGYTVTVASNGEEGFKQAQL-LQPALIICDWIMPRLTGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    V+     +  F   L      + ++ G  AGA+ F+ KP N   ++  +R   ++
Sbjct: 63  EVCRKVKASSDLSTTFFILLTSLGSVQDLVKGLDAGADDFISKPININEMKARVRAGLRL 122

Query: 121 QKSKDENQ 128
            +   + Q
Sbjct: 123 HQLSQDLQ 130


>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 215

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD     R          G+ V  A +  EA E  +K   P+ +V D +M  +   
Sbjct: 4   TILVVDDDFGTRLSISDYLEISGYTVISAENGQEALELVDKHK-PHLIVTDITMPEMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P    + V +L      +  I G + G +++L KPF  + L   +R L + 
Sbjct: 63  DLVKRIRSRPAFRLLPVIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDELGVVIRALLER 122

Query: 121 QKSKD 125
            +  +
Sbjct: 123 SQLIE 127


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    ++     G+    A+      +   +E  P+ +++D  +  V  F
Sbjct: 4   KILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARRE-QPDLVLLDLMLPMVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L   V+    +AG   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  TVCRTLRAESS---VPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRR 119

Query: 121 QKSKDE 126
              + E
Sbjct: 120 VNGELE 125


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + K+        G+ V  A    +A +    E  P+ +++D  +     +
Sbjct: 5   KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSED-PDLILLDLMLPEKDGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR      ++ +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  EVCREVRAQ---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120

Query: 121 QKSKDE 126
              + E
Sbjct: 121 VAKQTE 126


>gi|320162523|ref|YP_004175748.1| putative response regulator [Anaerolinea thermophila UNI-1]
 gi|319996377|dbj|BAJ65148.1| putative response regulator [Anaerolinea thermophila UNI-1]
          Length = 325

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + +V R + +D G+ V  A +  EA +   ++  P+ ++ D  M  +  
Sbjct: 8   TRILLVEDDGSLLEVVRDILSDAGYHVITAANGEEALQAF-RQAHPDLILSDIMMPVMDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  +  VRQM  G  V   +L    +        R GA+ +L KPF+ + L  A+    +
Sbjct: 67  FQLLEAVRQMEAGMLVPFIFLSARTERYDTSNARRLGADDYLFKPFSADELLTAVEARLR 126

Query: 120 MQKS 123
            ++ 
Sbjct: 127 RREQ 130


>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +R        + G+ V +A    +A +  E   + + +++D  M  +   
Sbjct: 5   TVLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEV-HLIILDIMMPNMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  TATFKIREE-RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRR 120


>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 224

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +    GF     T    A      +  P+ +++D  + G+   
Sbjct: 4   KILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQD-PDLVLLDLMLPGMSGV 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  L  + D   ++ G  +GA+ ++ KPF    L   +R     
Sbjct: 63  DICKEIRKE---SNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARL-R 118

Query: 121 QKSKDENQFLD 131
           Q S++ ++ L+
Sbjct: 119 QNSEEPSEILE 129


>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ ++     G++ +EA    EA +   KE  P+ +++D  +  +  F
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIA-KEQNPDLIILDVMLPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R +     + +  L  + +    + G   GA+ ++ KPF+   L   ++   +   
Sbjct: 63  -SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRIS 121

Query: 123 S 123
            
Sbjct: 122 L 122


>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
 gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
          Length = 238

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
 gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+         G+ VF+A    E  E  EKE   +  ++D  M  + 
Sbjct: 3   MNHVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEE-IHLAIVDIMMPRMD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 62  GIRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRR 120

Query: 121 QKSKDE 126
            +   E
Sbjct: 121 YRMFAE 126


>gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53]
 gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisA53]
          Length = 457

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A+S  +A E C +    + +++D  M  +  F
Sbjct: 4   RILVVDDIPANAKLLEARLSAEYFDVLTASSGAQALEICARSEC-DIILLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP     L   +R L ++
Sbjct: 63  EVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVADVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 72.1 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    + +     V       EA            +V +       L 
Sbjct: 157 RILLVDDRPSSFERMAQVLSSE-HTVDVEPDPAEALFHAADGDYDLLIVSLGLEDFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112
             +  R +     + +  +  + D    +  G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHLPILAI-ADADNNTRLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 225

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E   +    + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGG-IDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119

Query: 121 QKSKDEN 127
             S+ + 
Sbjct: 120 GASEPQQ 126


>gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
          Length = 1353

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ ++ +R       ++  F   +A +  EA E   KE   + +V D  M  +   
Sbjct: 1104 TILIVEDNNEIRHYLSSGLSEL-FNTLDAGNGEEALEKL-KENEVDIIVTDVMMPVMDGI 1161

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + + +  + G + GA+ ++ KPF+   L   ++ + + 
Sbjct: 1162 KLCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRT 1221

Query: 121  QKSKDE 126
            ++   E
Sbjct: 1222 RRRMLE 1227


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +   A E  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGA-DLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    ++V V  L  +      + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRTLRQK---SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 4   NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A    EA +   +E  P+  ++D  M G+  F
Sbjct: 15  RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIA-REFRPDAYILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   E  I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 74  ELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 133

Query: 123 SKDEN 127
           + +E+
Sbjct: 134 AVEED 138


>gi|325299898|ref|YP_004259815.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324319451|gb|ADY37342.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1366

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R           + V   ++  EA E   K+  P  ++ D  M  +    
Sbjct: 1100 ILVVEDDEEIRNYISREL-AADYHVGTCSNGKEALEVIFKQE-PALIISDVMMPEMDGLT 1157

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V+Q      + +  L  +   E  I G   GA+++L KPFN + LR  +  L   +
Sbjct: 1158 LCRMVKQNLHKRHIPIILLTAKTRDEDNIEGLETGADAYLTKPFNMKILRHTVENLIHSR 1217

Query: 122  KSKD 125
            +   
Sbjct: 1218 EYLR 1221


>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ ++     G++ +EA    EA +   KE  P+ +++D  +  +  F
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIA-KEQNPDLIILDVMLPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R +     + +  L  + +    + G   GA+ ++ KPF+   L   ++   +   
Sbjct: 63  -SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRIS 121

Query: 123 S 123
            
Sbjct: 122 L 122


>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
 gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
          Length = 239

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA +  +A +   K    + +++D  M G   +
Sbjct: 6   KVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALK-YDYDVILLDVMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         +  L  + +    + G   GA+ +++KPF+   +   ++ + + 
Sbjct: 65  EVCKEIRM---AKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRR 121


>gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 458

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    +A   C+     + +++D  M G+  F
Sbjct: 5   RILVVDDIPANVKLLEARLLAEYFEVLTAEDGLKALAICDS-TQVDLVLLDIMMPGMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 64  DVCERLKSDARTSHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 123

Query: 121 QKSKDENQF 129
           +   DE + 
Sbjct: 124 KTLSDELRM 132



 Score = 70.2 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E     ++++ + E      
Sbjct: 159 ILLVDGRANSQERIVRALKPI-AQVTATSDPQAALFEV-AEKPFELVIVNSNFEDYDPLR 216

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + V  +  +   E ++     G N ++++P +   L        + +
Sbjct: 217 LCSQLRSLERTRFLPVLLVTEQGADEMIVRALDLGVNDYIVRPLDPNELVARSLTQIRRK 276

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 277 RYNDRLR 283


>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 254

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
 gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
          Length = 232

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           ++LLVD    +R+  +      G   V  A++  +A +  EK  +P+ ++ D  M     
Sbjct: 6   TILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEK-TIPDVIISDIMMPEVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            EF+  +R       + V +L         I G  +G +++L KPF+ E L   ++ L +
Sbjct: 65  YEFLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLLE 124

Query: 120 MQKSKDE 126
            +K+ ++
Sbjct: 125 RRKTNEK 131


>gi|332706446|ref|ZP_08426507.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354330|gb|EGJ33809.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 121

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ S   R++   L    G  V  A+   EA E    E  P+ +V+D  M  + 
Sbjct: 1   MSKVLVVEDSLAQRQMISDLLKGSGLKVDVASDGVEALEHIL-ESCPDVVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G R GA++++ KPF    L   +R+L 
Sbjct: 60  GYEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMRQGADAYIAKPFQPTELIGTVRQLL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 222

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+V R      GF   EA +   A E   K    + +++D  M  + 
Sbjct: 1   MAKILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKV-KNTHFDCVILDVMMPVLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++ +     V V  L    +    + G   G + ++ KPF+ + L   ++ + 
Sbjct: 60  GFSTCKQIKSID---QVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVL 116

Query: 119 QMQKSKDEN 127
           +  K    N
Sbjct: 117 ERGKKTQAN 125


>gi|256423550|ref|YP_003124203.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256038458|gb|ACU62002.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1313

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
            LL+D +  +R     LF+D  ++V+EA +  +     EK  +P+ ++ D  M+G+     
Sbjct: 1053 LLIDDNAEIRGYLHQLFSDK-YIVYEAENGADGFAAIEK-YMPDLVISDVQMDGMDGLAL 1110

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +++      + V  L         + G   GA+ ++ KPF+ + L   ++ + + + 
Sbjct: 1111 CRKIKETEALCHIPVILLTAASSPASRLEGIEGGADDYITKPFDNDLLLVKVQTIIRNRN 1170

Query: 123  SKDE 126
               E
Sbjct: 1171 LLRE 1174


>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+++    + ++ +   +  G+    A+   E  E    E  P+ +++D  + 
Sbjct: 1   MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSES-PDCIILDIMLP 59

Query: 58  --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                E    +R       V +  L  + +   +I G   GA+ +++KPF+   L   ++
Sbjct: 60  KLNGWEVCKTIRMED--RHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVK 117

Query: 116 ELPQMQ-KSKDENQFLD 131
            + +    S+ E   L 
Sbjct: 118 TVLRRTILSESEKDRLQ 134


>gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++ +V+   ++ +V +      G+ V  A +  E      +E  P+++++D  +  +   
Sbjct: 4   TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKI-REGNPDFVILDLMLPDMPGE 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R   L +DV +  L  +   E  I G   GA+ ++ KPF+   +   +  + + 
Sbjct: 63  EICKQIR---LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRR 119

Query: 121 QKSKDENQFLD 131
            ++ ++ +   
Sbjct: 120 TRTLNKMEIFS 130


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       ++V       E  +        + +++D  + G+ 
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQAL-HGDYDLIILDIMLPGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    ++ + ++  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---NNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDENQ 128
              +    NQ
Sbjct: 117 SRYERLASNQ 126


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 238

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A++   A +   +E+ P+ +++D  M G+  F
Sbjct: 13  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKA-REVRPDAIILDVMMPGMDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + +   
Sbjct: 72  GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSG 131

Query: 123 SKDEN 127
            + + 
Sbjct: 132 GRVQE 136


>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 228

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 7   NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 9/137 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF V  A+    A E      + + +++D  + G+ 
Sbjct: 1   MTNILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTV-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRA---TSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM---QKSKDENQFLDA 132
           +      ++ + + L+ 
Sbjct: 117 RRGHDVSAESQEEGLEE 133


>gi|158338166|ref|YP_001519343.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158308407|gb|ABW30024.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 355

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L VD       + + +    G+ +    S   A    +K   P+ +++D  M G+   E
Sbjct: 11  ILAVDDLPDNLMLLKMMLESAGYRIELVDSGPAALAQIQKA-QPDLVILDVMMPGMSGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +    +   ++ G  AGA+ F+ KP   E L+  +R L +++
Sbjct: 70  VTQKIRNDPQLPYIPILLISAH-ERSSVVKGLDAGADDFIRKPVELEELQARVRSLLRLK 128

Query: 122 KSKDENQ 128
           +S D+ +
Sbjct: 129 QSIDQRE 135


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A++   A +   +E+ P+ +++D  M G+  F
Sbjct: 11  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKA-REVRPDAIILDVMMPGMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 70  GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 127


>gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18]
 gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase
           [Rhodopseudomonas palustris BisB18]
          Length = 457

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  +A E C +    + +++D  M  +  F
Sbjct: 4   RILVVDDIPANAKLLEARLSAEYFDVLTASNGAQALEICSRAAC-DIVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRV 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    +       V    +  EA            +V +       L 
Sbjct: 157 RILLVDDRPSSYERLAPVLAAE-HAVDVEPNPSEALFHAADGNYDLLIVSLGLEEFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +  + D    +  G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAI-ADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 230

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + +  R      GF V  A +  +A E   K   P+ +V+D  +  +  F 
Sbjct: 7   VLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRP-PDVVVLDLGLPDMDGFT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +   T V V  L    D    +    AGA+ ++ KPF  E     +R   + 
Sbjct: 66  V-LAGLRGWTSVPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRR 121


>gi|255263715|ref|ZP_05343057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Thalassiobium sp. R2A62]
 gi|255106050|gb|EET48724.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Thalassiobium sp. R2A62]
          Length = 149

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R V R         V E      A +    E  P+ +V+D  M  + 
Sbjct: 1   MSRILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAV-SEHAPDLIVLDIGMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         V +L    D    I G   GA+ ++ KPF+   +   ++ + 
Sbjct: 60  GLQVCQELR---RTHATPVLFLTARSDEIDRIVGLELGADDYVTKPFSPREVVARIKAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 KR 118


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    + ++     +   F    A +   A E   K+   + +++D  + G
Sbjct: 1   MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIA-ESFLKKNEVDLILLDWMLPG 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +    F+  +R      ++ V  L  + +    I G   GA+ +L KPF+++ L   ++ 
Sbjct: 60  MDGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKA 119

Query: 117 LPQMQK 122
           + + +K
Sbjct: 120 ILRRKK 125


>gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
 gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
          Length = 266

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+LL++    + ++        GF V  A    +  +    +  P+ +++D  +  V
Sbjct: 1   MKPSILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPNV 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L
Sbjct: 60  DGLTLCQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKAL 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|290560102|pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
           Yycf
          Length = 120

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E EL P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQ 121
            Q
Sbjct: 119 RQ 120


>gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +R        + G+ V +A    EA +  E   + + +++D  M  +   
Sbjct: 5   TVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEV-HLIILDIMMPNMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  TATFKIRAE-RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRR 120


>gi|118594849|ref|ZP_01552196.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Methylophilales bacterium HTCC2181]
 gi|118440627|gb|EAV47254.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Methylophilales bacterium HTCC2181]
          Length = 387

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +    ++   L     + V  ATS  +  +       P+ +++D  M  +   
Sbjct: 9   TILVVDDAPANLQLMSGLLQ-ENYRVKAATSGEKGLKIALTSPQPDLILLDIMMPEMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + + +L  + + E    G   GA  +++KP +       ++    +
Sbjct: 68  EVCKRLKADERTKGIPIIFLTAKSEAEDEALGLSCGAVDYIIKPVSPPIAMARIKTHIDL 127

Query: 121 QKSKD 125
              K 
Sbjct: 128 YHQKK 132


>gi|71909165|ref|YP_286752.1| response regulator receiver [Dechloromonas aromatica RCB]
 gi|71848786|gb|AAZ48282.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Dechloromonas aromatica RCB]
          Length = 384

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     +   +     + V EA+S  +A        LP+ +++D  M  +   
Sbjct: 12  TILVVDDTPFNLTLMSAVLKKH-YNVKEASSGIDALTMIRSGPLPDLILLDIMMPKMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   +V V +L   V  +    G   GA  ++ KP  +  +   ++   Q+
Sbjct: 71  EVCRQIKADPATANVPVIFLTANVSSDDEEKGFALGAVDYITKPIRQRVVLARIKTHLQL 130

Query: 121 QKSKD 125
           + S D
Sbjct: 131 KASAD 135


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD    + ++   +    GF      +   A E   +   P+ +++D  + G+  +
Sbjct: 8   TILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRST-PDLVLLDLMLPGMNGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     ++V +  L  + D E ++ G  AGA+ ++ KPF    L   +R   + 
Sbjct: 67  EVCQQIR---RSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRP 123

Query: 121 QKSKD 125
           ++S+ 
Sbjct: 124 RESRQ 128


>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +RK+ +      GF V E +   EA E   +  + + +++D  +    
Sbjct: 1   MK-ILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKF-QPSMYSVVILDVMLPQKD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+     D  V  L    + +  I G   GA+ +++KP + + +   ++ + 
Sbjct: 59  GWSVLREIRKKD---DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAIL 115

Query: 119 QMQKSKDENQFL 130
           +  K  + N  L
Sbjct: 116 KRTKKPNSNDIL 127


>gi|255689849|ref|ZP_05413524.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260624453|gb|EEX47324.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1373

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F+D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1114 LLIVEDNEEIQKYIAESFSDS-FAVITADNGEEGKQQALSH-IPDIIVSDIMMPIMDGIT 1171

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + +  L  +   +    G   GA+S+L KPF+   LR  +  L + +
Sbjct: 1172 LCRQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1231

Query: 122  K 122
            K
Sbjct: 1232 K 1232


>gi|17232800|ref|NP_489348.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134447|dbj|BAB77007.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 437

 Score =  139 bits (353), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD +    KV        G+    AT    A E  E    P+ +++D  M G+  F 
Sbjct: 12  VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAH-PDLILLDVMMPGIDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+  +  V ++    D    + G   GA  ++ KPF  E +   ++   ++ 
Sbjct: 71  TCRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKIS 130

Query: 122 KSKDENQF 129
                 + 
Sbjct: 131 HLTRTLEQ 138


>gi|261253471|ref|ZP_05946044.1| response regulator [Vibrio orientalis CIP 102891]
 gi|260936862|gb|EEX92851.1| response regulator [Vibrio orientalis CIP 102891]
          Length = 240

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++         + V       + +   E    P+ +++D  + G   F
Sbjct: 4   KILVVDDDQEICELLEEYLTKQSYQVSTVNDGEQMKAEIELNGYPDLILLDVMLPGDDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +Q    + V +  L    D    I G   GA+ ++ KPFN   L   ++ + +   
Sbjct: 64  TLC-QQTRRQSSVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLRRAS 122

Query: 123 SKDEN 127
             +E 
Sbjct: 123 PAEEL 127


>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 229

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +  F
Sbjct: 4   KILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDKD--IDIILLDIMMPNIDGF 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         + +L         I G   G + +++KPF+ + L+  ++   + 
Sbjct: 62  QICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118

Query: 121 QKSKDENQF 129
           +K    N  
Sbjct: 119 EKRVPLNNR 127


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    +R++ R++  + G+ V EA    EA +  E     +++++D  M      
Sbjct: 7   TVLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHK-IHFVILDVMMPKLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+      + V  L  + +    + G RAGA+ +L KPF R  L   M  + + 
Sbjct: 66  ETLDILRKQSG---LPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRR 122

Query: 121 QKS 123
             +
Sbjct: 123 SDA 125


>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 763

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+ + + + V  +L    G  V  A +  EA E  +K    + + +D  M  +    
Sbjct: 535 ILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLDKNNY-DLVFMDILMPVMDGLE 593

Query: 63  -IAHVRQMPL--GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +R+     G  + +  +              AG + +L KP   E L  A+ ++ +
Sbjct: 594 TTRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQMEELNQAISKIIK 653

Query: 120 MQKS 123
             +S
Sbjct: 654 KARS 657


>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V       +       E   + +++D  + GV 
Sbjct: 1   MSRILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHED-FDLVILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    +  +  +  + +    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICRKVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++        GF  +EA    +A +  + E+  + +++D  M  +   
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M   S+L+ D    + ++        G+ V +AT   EA     +    + +++D  M  
Sbjct: 1   MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAV-LIIQSQPIDLVILDIMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E    +R      ++ + +L  +      + G   GA+ ++ KPF+   L   +  
Sbjct: 60  IDGYEVARQIRIK---HNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +++VD    +  + R      G+ V  A++  E          P+ L++D  M  V  
Sbjct: 3   QHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTAD-PDMLILDVMMPQVDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    R    G+ V +  L  + D    + G  AGA+ +L+KPF  E L   +R L + +
Sbjct: 62  WEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRK 121


>gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 229

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+      + G+ + +A+   EA E   +    + +++D  +  +   
Sbjct: 6   KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETL-RNTTIDLIILDIMLPKMDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + + +L  + +    I G  +GA  ++ KPFN   L   ++   +  +
Sbjct: 65  EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123

Query: 123 SKDENQ 128
                +
Sbjct: 124 VYQTEE 129


>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 228

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    + ++ R      GF V  A       E    +   + +++D  + G+ 
Sbjct: 1   MEKILIVEDDLDIAELERDYLEANGFAVAIAGDGLAG-EKAALDEKVDLVLLDIMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ +  +    +    I G   GA+ +++KPF+   L   ++   
Sbjct: 60  GFQVCRRIREK---RNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHL 116

Query: 119 QMQKS 123
           Q  + 
Sbjct: 117 QRYRQ 121


>gi|171056736|ref|YP_001789085.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6]
 gi|170774181|gb|ACB32320.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6]
          Length = 382

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD      ++   L    G+ V  A S  +A E    +  P+ +++D  M G    +
Sbjct: 17  ILVVDDVEQNVRLLADLLVFQGWRVSTAMSGEQALERIATD-APDLVLLDVMMPGLSGYD 75

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +       + + G  AGA+ F+ KP NR  L   +R L +++
Sbjct: 76  VCRRLRAEPDHALLPIVLVTALDPTAERVKGLEAGADDFISKPINRPELMARVRSLLRIK 135

Query: 122 KSKDENQFLDA 132
              D+ Q   A
Sbjct: 136 LLHDQVQRQRA 146


>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 235

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A    EA +   +E  P+  ++D  M G+  F
Sbjct: 10  RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIA-REFRPDAYILDVMMPGMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   E  I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 69  ELLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128

Query: 123 SKDEN 127
           + +E+
Sbjct: 129 AVEED 133


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
          Length = 225

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    + ++        GF V  A +  EA +       P+ +++D  M  +  F A
Sbjct: 2   LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKART-FRPDAVILDVMMPVMDGFDA 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R    G D  V +L      E  +AG   GA+ ++ KPF+ E +   +R + +   + 
Sbjct: 61  VKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTL 120

Query: 125 DENQF 129
              + 
Sbjct: 121 SAAER 125


>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 233

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + K+        G+ V  A     A E    E  P+ +++D  +     +
Sbjct: 5   KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSEN-PDLILLDLMLPKKDGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR      ++ +  L  +      + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  EVCREVRAK---KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRR 120

Query: 121 QKSKDEN 127
              + E+
Sbjct: 121 VLKQQED 127


>gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 243

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        G+ V+ A +  +A    + E+ P+ +V+D  ++    L
Sbjct: 5   KILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVD-EVRPDLIVLDVLLKQLNGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R++     V V ++  + D   +I G   G + ++ KPF+   L   ++   + 
Sbjct: 64  DVCQQIREITA---VPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRR 120

Query: 121 QKSKDENQ 128
           Q  + E +
Sbjct: 121 QSLQSEQR 128


>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius CECT 5713]
          Length = 233

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V    +  +A +        +++++D  + G+ 
Sbjct: 1   MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKY-DFIILDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R        ++  L  + D    I G   GA+ +L KPF+   +   ++ + + 
Sbjct: 60  GIEVTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRR 119

Query: 121 QKSKDEN 127
            +   +N
Sbjct: 120 VEHYSDN 126


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        GF V    S   A      +  P+ LV+D  +  +  F
Sbjct: 80  RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDP-PDLLVLDVMLGDIDGF 138

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V   +L      +  + G   G + ++ KPF+   L   +R + +   
Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198

Query: 123 S 123
           S
Sbjct: 199 S 199


>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            S+L+V+    +           G+ V +A            E  P+ +V+D  +     
Sbjct: 6   RSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDES-PDLVVLDVMLPELNG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +RQ   G D  V  L  +      I G   GA+ +++KPF  + L   ++ + +
Sbjct: 65  FEVLKELRQR--GRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLR 122

Query: 120 MQ 121
            +
Sbjct: 123 RR 124


>gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 234

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LL+D    +  + +      GF    A       E   ++   + +++D  M  + 
Sbjct: 8   MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTY-DLILLDVMMPKMN 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +    +  V  L  + +    I G   GA+ ++ KP     +   +R + + 
Sbjct: 67  G-IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR 125

Query: 121 QKSKDENQ 128
            +  D  Q
Sbjct: 126 TQPSDNAQ 133


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    G  V          E   +    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPA-DLVLLDVMLPGMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   + V +  L  +      + G   GA+ ++ KP++   L   +  + + 
Sbjct: 60  GVEVC-RELRRESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRR 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264]
 gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264]
          Length = 229

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+      + G+ + +A+   EA E   +    + +++D  +  +   
Sbjct: 6   KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETL-RNKTIDLIILDIMLPKMDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + + +L  + +    I G  +GA  ++ KPFN   L   ++   +  +
Sbjct: 65  EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123

Query: 123 SKDENQ 128
                +
Sbjct: 124 VYQTEE 129


>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 270

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    + ++        G+ V  A     A     +E  P+ +V+D  +  +   
Sbjct: 44  RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTA-REFRPDAVVLDVMLPDMDGL 102

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162

Query: 123 S 123
           +
Sbjct: 163 A 163


>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
 gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  +        G+ V  A     A +        + +++D  M G   +
Sbjct: 4   RILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV--NDSLDLVILDIMMPGISGI 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   H+R+    ++V + +L           G  AG + ++ KPF+ E L   +    + 
Sbjct: 62  ETCQHIRK---TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118

Query: 121 QKSKDENQFLDA 132
                E +  + 
Sbjct: 119 YTIYQEKKEQEE 130


>gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 234

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++ R    + G+ V    +  E     EK   P+ +++D  + G   
Sbjct: 10  QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNT-PDLVILDLMLPGIGG 68

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +++      + +  +  +    + + G   GA+ ++ KPF+   L   +R + +
Sbjct: 69  MDLCKKIKEKYS---MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLR 125

Query: 120 MQK 122
             K
Sbjct: 126 RTK 128


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF V        A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRTRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +      + GF V  A    +     E+E   + LV+D  + G   
Sbjct: 6   TKVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLEREN-FHLLVLDLMLPGEDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G ++ +  L  + D    I G   GA+ +L KPFN   L   ++ + + +
Sbjct: 65  LSICRRLRQKGNEIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRRR 124

Query: 122 KSK 124
            ++
Sbjct: 125 PAE 127


>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    VR+  +      G  VF   +  E  E       P+ +V+D  + G+ 
Sbjct: 1   MPRVLIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLL-PFRPDVVVLDLMLPGMS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V +  +    D   ++ G   GA+ +++KP     L   +R + 
Sbjct: 60  GLDVCRRIRDRD---QVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVL 116

Query: 119 QMQKS 123
           + Q +
Sbjct: 117 RRQDA 121


>gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 230

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +RK+ R     + +++ EA++  EA +    +   + +++D  M      
Sbjct: 4   RILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISAD-FYDLILLDIMMPEVDGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+        V  L    D E+++ G + GA+ +L+KPF  + L   +  + + 
Sbjct: 63  ELLKTLREHLDNK-TPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIRR 121

Query: 121 QKSKD 125
            K+  
Sbjct: 122 TKNYK 126


>gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
 gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
          Length = 258

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    V  +     N  GF    A    EA     KE LP+ +V+D  +     
Sbjct: 32  KKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKE-LPDLIVLDLMIPEFSG 90

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+   ++++ P    + +  L  + D    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 91  LDVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILR 150

Query: 120 MQ 121
            +
Sbjct: 151 RR 152


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    + +  +      G+ + +A    E  +    E   + +++D  +     +
Sbjct: 8   RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKY-DLILLDIMLPKLNGM 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+   +D+ +  L  + +   ++ G   GA+ ++ KPF  E L   +R   + 
Sbjct: 67  EVCRRIRQI---SDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKR 123

Query: 121 QKSKDE 126
           +K + E
Sbjct: 124 KKLEIE 129


>gi|149204359|ref|ZP_01881326.1| response regulator receiver modulated serine phosphatase
           [Roseovarius sp. TM1035]
 gi|149142244|gb|EDM30291.1| response regulator receiver modulated serine phosphatase
           [Roseovarius sp. TM1035]
          Length = 428

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD S + R++       +GF V EA S  EA   C  +  P+ ++ D  M G   
Sbjct: 22  QRVLVVDDSRLQRRILTASLQRWGFEVQEAESGEEALRLCRDQP-PDLVMSDWMMPGLSG 80

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R +   +  +   L  + D +++  G  AGA+ FL KP N   LR  +     
Sbjct: 81  LEFCRKFRDLQQESYGYFILLTSKSDKDEVALGLDAGADDFLTKPVNAAELRARISAGAR 140

Query: 117 LPQMQKSKDENQFL 130
           + +MQ+   E   L
Sbjct: 141 ILRMQRELTEKNRL 154


>gi|237722776|ref|ZP_04553257.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447298|gb|EEO53089.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1331

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +     + +    +  +A     +E  P++++ D  M  +  
Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDFVISDIMMPEMSG 1123

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G   GA++++ KPF+   L+  ++ L  
Sbjct: 1124 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLA 1183

Query: 120  MQKSKDE 126
             +    +
Sbjct: 1184 NRALLRQ 1190


>gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
 gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
          Length = 1466

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            S+LLV+ +  +R+  + +  +  + + EA +     +    E LP+ ++ D  M     +
Sbjct: 1208 SILLVEDNDELRRFLKTILAES-YSILEADNGETGIKIAL-EQLPDIIISDIMMPQKNGI 1265

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  ++     + + +  L  +   E  + G + GA+ ++ KPF+   L+  +  L + 
Sbjct: 1266 ELLNELKNNISTSHIPIILLSAKSSIESKLEGMQYGADDYITKPFSATYLKARIHNLVEQ 1325

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1326 RKRLQQ 1331


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE------KELLPNYLVIDESM 56
            +L+V+   ++R +      + G+ V  A+    A    +       E   + +V+D  +
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                L+    +R       V +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQVNGLDICRLLRYNNNI--VPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQ 121
           R L + Q
Sbjct: 138 RALIRRQ 144


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            + + D    +R + +       + V  A    +A    E+    + +++D  M     +
Sbjct: 5   RVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHY-HLVILDVMMPKIDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 64  EVCRRMRNH---TNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120


>gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 244

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + +VD    +R++ +      G+     ++  +A E   K   P+ +++D  M  + 
Sbjct: 11  MKKIYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEF-KNQEPDLMILDIMMREMD 69

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +DV + ++    +    I G   GA+ +L KPF+   L   ++ + 
Sbjct: 70  GLELCREIRK---TSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTIL 126

Query: 119 QM 120
           + 
Sbjct: 127 KR 128


>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 230

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+ D +  + K+ +      GF V  A    EA         P  +++D  M  +  
Sbjct: 3   KNILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKF-NHYNPQLILLDIMMPLMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++  +  +  + +    I G  +GA+ +++KPF+   +   ++ + +
Sbjct: 62  IEVCNKIREK---SNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    +R++         + VF A    E     +    P+ +++D  + G+
Sbjct: 1   MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNN-PHLVLLDILLPGM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +R +       + +L  + D    + G  AGA+ +L KPF+   L   ++  
Sbjct: 60  KGYEICQKIRMLSE---APIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKAN 116

Query: 118 PQMQKS 123
            +  K 
Sbjct: 117 LRRSKM 122


>gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 235

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++ +   +  GF          A     +EL P+ +++D  + G   L
Sbjct: 2   NILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAIT-AYQELQPDLIILDWMLPGLDGL 60

Query: 61  EFIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           E  A +RQ   G   D F+  L  + +    I G   GA+ +L KPF+   L   +R L 
Sbjct: 61  ELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALL 120

Query: 119 QM 120
           + 
Sbjct: 121 RR 122


>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
 gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++ R      G+ V          +        + L++D  +  + 
Sbjct: 1   MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAY-DILIVDLMLPQLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++    ++ +  L    +    I G   GA+ +L KPF+   L   +R   + 
Sbjct: 60  GF-EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKR 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 259

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+V        GF V  A    +         + + +V+D  + G+   
Sbjct: 37  RVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSV-DLIVLDVLLPGLDGL 95

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L    D   ++ G   GA+ +L KPF+   L   +R L + 
Sbjct: 96  QVCREIRRSNA---VPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRR 152


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+VD    VR + +  F+  GF VF AT+  +A     +E  P+ +++D  + G   L
Sbjct: 17  SVLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDA-TQVAQEQQPDVVILDLMLPGYDGL 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R      D+ +  L    + +  + G  AGA+ +L KPF    L    R + + 
Sbjct: 76  EVTRRLR---RSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRR 132

Query: 121 QKS 123
           + +
Sbjct: 133 RGN 135


>gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016]
 gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 243

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +    + G+ V+ A +  +A     K + P+ +++D  +  +  
Sbjct: 16  KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNK-INPDLIILDLMLPDICG 74

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  + D E ++ G   GA+ ++ KPF+   L   ++ L +
Sbjct: 75  EDICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLR 131

Query: 120 MQK 122
             +
Sbjct: 132 RTE 134


>gi|161621454|ref|NP_102571.2| response regulator PleD [Mesorhizobium loti MAFF303099]
          Length = 457

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         F V  AT+  +A E CE     + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCE-NGKVDVVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + V  +         + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +   +
Sbjct: 123 KSLTDELRLRAS 134



 Score = 56.4 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60
            +LL+D      +  + +        V              +      ++     +   L
Sbjct: 157 KVLLIDERKSSVERIQKMLRDRADLDVI--GDPHAGFFQAAETSYECVMISTAFADFDPL 214

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     V +  L  E + E++I G   G N +L++P +++ L   +R   + 
Sbjct: 215 RLCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274

Query: 121 QKSKDENQ 128
           ++  D+ +
Sbjct: 275 KRYNDQLR 282


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 19  MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG--PDVLILDVMLPDTD 75

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 76  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 133

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 134 RRVKKTE 140


>gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1387

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 2/124 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD                G  V  A +  +     E+    + +++D  M G+  
Sbjct: 1264 RKVLIVDDDVRNIFALTSALEREGMQVLYAENGSDGIALLERTPGIDMVLMDVMMPGMDG 1323

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                A +R+     ++ +  L  +           AGA+ ++ KP + E L   +R    
Sbjct: 1324 YEATAAIRRQVRFKELPIVALTAKAMRGDREKCLEAGASDYITKPVDTEQLLSLLRVWLS 1383

Query: 120  MQKS 123
             +++
Sbjct: 1384 RREN 1387



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      ++   L    GF    A           ++L P+ +++D  + G+    
Sbjct: 998  LLIIEDDANFARILGDLARTHGFKAVVALGSETGLAAV-RDLQPHAVLLDIHLPGMDGWT 1056

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKM-IAGARAGANSFLLKPFNRETLR---FAMREL 117
             +  ++  P    + V+ L      +     G ++GA + L KP + E +      M   
Sbjct: 1057 VLDRLKHDPETRHIPVHLLS----VDDAGQRGLQSGAVACLKKPVDSEQMAAIFARMHAF 1112

Query: 118  PQMQ 121
               +
Sbjct: 1113 ADRK 1116



 Score = 61.0 bits (148), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 31/104 (29%), Gaps = 3/104 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+++     R     L            +  EA    + E   + +V+D  +     
Sbjct: 1118 KNLLVIEDDEAQRTSIVELIGGGDVRSQAVATAQEALALLQSEP-FDCVVLDLGLPDADG 1176

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103
               +  ++      ++ V          +     +    + ++K
Sbjct: 1177 QALLGQIKGSADPWNLPVIVYTGRDLTPQQERDLKRRVEAVIVK 1220


>gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  + +      G+ VF A +  E  +       P+ +++D +M 
Sbjct: 1   MKEKYKILIVDDEQSILDMLKLQLEFEGYAVFTAGNAKETLDKV--SYGPDIILLDINMA 58

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+      A +R         + +L   V  +  I G  AG + ++ KPF+   L   + 
Sbjct: 59  GMNGLDLCASIR---DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARIS 115

Query: 116 ELPQMQK---SKDENQFLDAI 133
              + ++   +K +++FL+ +
Sbjct: 116 AHLRREQRSHNKTKSKFLEEL 136


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ VF A    +A +    E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIY-EKEPDIVLLDIMLPGQDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              ++   +
Sbjct: 119 RHYTQPSQE 127


>gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
           27755]
 gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
           27755]
          Length = 236

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +RK  + +     + V    +  EA         P+ +++D  +  +   
Sbjct: 6   RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLI-TSRCPDVVILDLGLPDMDGM 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   +++ +  +      +  +     GA+ ++ KPF    L   +R   +  +
Sbjct: 65  -KILKEVRAWSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIRHFR 123

Query: 123 SKDENQ 128
              +NQ
Sbjct: 124 GTSKNQ 129


>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 238

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ +  + +V     ++ G+ V+ A     A     ++  P+ +++D  +  +   
Sbjct: 7   TILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALS-LHQQHQPDLVILDWMLPQLDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +       V  L    +   ++ G   GA+ +L KPF    L   +R L +   
Sbjct: 66  -EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR-- 122

Query: 123 SKDENQFLDA 132
            +   Q L A
Sbjct: 123 DQRIQQLLQA 132


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + +          + V          E        + +++D  +    
Sbjct: 1   MTKILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTY-DLILLDLMLPNIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRQIRQN---QTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAML 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|84685761|ref|ZP_01013657.1| response regulator [Maritimibacter alkaliphilus HTCC2654]
 gi|84665854|gb|EAQ12328.1| response regulator [Rhodobacterales bacterium HTCC2654]
          Length = 433

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S   R+V        GF V EA S  EA          + ++ D  M G+  
Sbjct: 21  RQVLVVDDSRAQRRVLVATLTRLGFDVIEAESGEEAL-LILGSTHIDLVLSDWMMPGMTG 79

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
           LE     R+MP     +   L  + +   +  G   GA+ FL KP + + LR  +     
Sbjct: 80  LELCRQFRKMPRDQYGYFILLTSKNEKGAVARGLDIGADDFLTKPISPDELRARISAGDR 139

Query: 117 LPQMQKSKDENQFL 130
           + +M++  +E   L
Sbjct: 140 ILRMERELNEKNRL 153


>gi|114566146|ref|YP_753300.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337081|gb|ABI67929.1| response regulator receiver modulated diguanylate cyclase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 301

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 5/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D   I R V + L + +G+ V EA    +A +  +++  P  +++D  M G+   
Sbjct: 2   RVLIADDDLISRTVVKALLSKWGYEVLEAGDGIQAWDILKEKDSPQLVLLDWMMPGIDGL 61

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
                +RQ+   T  ++  L      E +I G  AGA+ ++ KPF  E L   +R    +
Sbjct: 62  ELCRRLRQLDNNTYHYIILLTGRDSKEDIIGGLNAGADDYITKPFMPEELEVRLRVGKRI 121

Query: 118 PQMQKSKDE 126
             +Q+S +E
Sbjct: 122 LDLQQSLNE 130


>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +  + GF         +A E       P+ +++D  + G+
Sbjct: 1   MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSK-PDLVLLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R     +D  +  L  + D   ++ G  +GA+ ++ KPF    L   +R  
Sbjct: 60  DGIEVCRQIRAE---SDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRAR 116

Query: 118 PQ 119
            +
Sbjct: 117 LR 118


>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
 gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    + +  R      G+ + +A +  +A E  E++ + + +++D  M  +   
Sbjct: 2   NILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTV-HLVIMDIMMPQMDG- 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I  + ++    ++ V  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  IRALMKIREERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRR 117


>gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1358

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 9/138 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L D +  +R     L ND  F V   T   +A +    + LP  ++ D  M      
Sbjct: 610 RVVLADDNADMRDYIHRLLND-DFDVVAVTDGEQAWQAIRDQ-LPELVLTDVMMPKLDGF 667

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       + V  L      E  +    AG + +L+KPFN   L   +R   Q+
Sbjct: 668 GLLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNARELLAKVRSQLQI 727

Query: 121 QKSKDE-----NQFLDAI 133
              + E      + L++I
Sbjct: 728 AHLRREGEAQVRRVLESI 745



 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LL +       V   L  D+G+          A          + +++D  M  +  
Sbjct: 1235 RRVLLAEDHPANALVATTLLEDYGYDCEVVPDGGTAIARWRTS-AFDLVMMDVQMPDMDG 1293

Query: 62   --FIAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R+           +  +             +AG + ++ KPF+   L   +R 
Sbjct: 1294 YEATRQIRRIEVQETRPRTPILAMTAHALKGDRETCLQAGMDDYIAKPFDAAELEQKLRA 1353

Query: 117  LP 118
            L 
Sbjct: 1354 LL 1355


>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+ D    +R++ R      G  V EA    EA +   +E +    VID  M    
Sbjct: 1   MATILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPV-QLAVIDVMMPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+     DV +  L    +    + G R GA+ +L+KPF  E L   +  L 
Sbjct: 60  GFELTRWLREE---RDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALL 116

Query: 119 QMQKSKD 125
           +  + + 
Sbjct: 117 RRYRIRA 123


>gi|171058978|ref|YP_001791327.1| response regulator receiver sensor signal transduction histidine
           kinase [Leptothrix cholodnii SP-6]
 gi|170776423|gb|ACB34562.1| response regulator receiver sensor signal transduction histidine
           kinase [Leptothrix cholodnii SP-6]
          Length = 394

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D S ++R + R +  D GF V EA       E   ++L P+ ++ D +M     
Sbjct: 3   KTVLVIDDSSVLRDIMREVLEDAGFNVIEAPHGQLGLERA-QQLAPDIVLCDINMPVLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-ELP 118
             F+   R       V +  +    + + M     AGA+ FL KPF  E L  A+  +L 
Sbjct: 62  YGFVQAARAHEHLRTVPILMVTAMAEKKSMRRAMEAGADDFLSKPFTPEELVSAVTGQLA 121

Query: 119 QMQKSKDENQF 129
           + ++ + + + 
Sbjct: 122 RRERHEADTER 132


>gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 244

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +VD    +R + +       F V  A S          E   + +++D  + G   F 
Sbjct: 7   IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R +   + V V  L    D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 67  VC-RSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122


>gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 242

 Score =  139 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA E  E E  P+ L++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVE-ECNPDLLILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRR 120


>gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++  +     G+ V  A S  +  +    E   + +++D  +     
Sbjct: 4   RRVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLL-GEYRCDLVILDVMLPDASG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         V  L    D +  + G  AGA+ ++ KPF+ + L    + + +
Sbjct: 63  YALCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVR 122

Query: 120 MQKSKDENQ 128
                 + +
Sbjct: 123 RSGGIVQQE 131


>gi|253572186|ref|ZP_04849590.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251838366|gb|EES66453.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1366

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            LL+++    +R+    LF    + V EA +  E     +K  +P  ++ D  M     F 
Sbjct: 1115 LLIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADK-YIPKLIISDIMMPVKDGFE 1172

Query: 64   --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R+      + + +L  + +    +   + G + +++KPFN E L+  ++ L + +
Sbjct: 1173 CSREIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQR 1232

Query: 122  KSKDEN 127
                + 
Sbjct: 1233 DLLRKL 1238


>gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1316

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +  +    +   +   F V  A +  EA E   KE + + +V D  M  +   
Sbjct: 1066 TILLVDDNVEILTYLQKKLSR-NFKVITAQNGREALEVLGKENM-SLVVSDVMMPEMDGM 1123

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++ P    + V  L  +     +  G +AGA+ +L+KPF   TL   +  +   
Sbjct: 1124 ELCTYIKENPSFCHLPVILLTAKSMTMYVEEGFQAGADDYLVKPFKVSTLIVRINNILSG 1183

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1184 RKKLKE 1189


>gi|254446460|ref|ZP_05059936.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260768|gb|EDY85076.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 998

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+   + RKV  H+ +  G  V  A    EA E  E     + +++D  M  +   
Sbjct: 876 RVLLVEDHPVNRKVATHMLSSLGVSVVVACDGLEALERVEGADKLDAVLMDWQMPVMDGL 935

Query: 63  --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R+M      V +  +              AG + +L KP   E L+  +  + +
Sbjct: 936 DASRKIREMKDWRAKVPIVAMTANAMRGDREKCIAAGMDDYLSKPVVPEKLKEVLSRILR 995

Query: 120 MQ 121
            +
Sbjct: 996 RE 997


>gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +          + V  A     A +       P+ +++D  +  + 
Sbjct: 1   MTRVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAA-RHPDVVLLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   T V +  L      ++ +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  GV-EVIRGLRGWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRR 118

Query: 121 QK 122
            +
Sbjct: 119 AE 120


>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
 gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V  A       E   K+   +  ++D  + GV 
Sbjct: 1   MSKILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEY-SLFILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKKIREE---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    V  V        G+ V        A      E  P+ +V+D  + G   
Sbjct: 3   QRVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEP-PDLVVLDLMLPGVDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R  P G  + +  L    D    + G + GA+ +L KPF+   L   +  + +
Sbjct: 62  LEVCRRLRAQPGG--IPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++      +   ++    GF+V  A S  E  E  E++   + +++D  + G+  
Sbjct: 3   TQLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGA-DLVLLDLMLPGLSG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L         + G   GA+ ++ KPF+   L   +R + +
Sbjct: 62  TDVCRRLRER---SNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLR 118

Query: 120 MQKSKDENQF 129
            +    + Q 
Sbjct: 119 RRDGGGDEQR 128


>gi|260062158|ref|YP_003195238.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Robiginitalea biformata HTCC2501]
 gi|88783720|gb|EAR14891.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Robiginitalea biformata HTCC2501]
          Length = 389

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+++    +R+V   +  +    + V EA +  E  E  +K+   + ++ D  M  
Sbjct: 3   MARILVIEDEAAIRRVLVKILTEENDAYQVEEAENGAEGLEKLKKQEY-DLVLCDIKMPK 61

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +              +     +    D +  +   R GA  ++ KP +   L   +R   
Sbjct: 62  MDGVEVLEAGRKSKPETPFIMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLTTVRNAL 121

Query: 119 QMQKSKDENQFLD 131
             ++   EN+ L 
Sbjct: 122 DRKELVAENRILK 134


>gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 245

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++VD +  +R++ R L    G+ + EA +  EA E  E + + + +++D  M G+   
Sbjct: 5   RIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLE-QGMFDLIILDIMMPGMNGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++  + +L  +        G  +G + +L+KPF+   L    + L + 
Sbjct: 64  QTCLEIRKQ---SNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRR 120

Query: 121 QKSKDENQFLDAI 133
            +     +  + +
Sbjct: 121 YQIYKGKENSETV 133


>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R + R      G+ + EA    EA E C KE   + +++D  M  + 
Sbjct: 1   MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKED-FDLIILDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L    +    I G   G + +++KPF+   L   ++ + 
Sbjct: 60  GFSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVI 116

Query: 119 QMQKSKD 125
                KD
Sbjct: 117 SRNNKKD 123


>gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    + ++        GF V  A++  E  E  ++    + +++D  +  +  
Sbjct: 5   RNILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNS-FDLVLVDLMLPEMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     ++V +  +  + +    I G   GA+ +L KPF+   L   +    +
Sbjct: 64  FTLCKTIRLE---SNVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    +  + +      G+    A    EA +  ++E   + +++D  +    
Sbjct: 1   MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEG-FDLILLDIMLPEID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R +     + V +L  + + E  + G +AGA+ +L KPF    L   +  + 
Sbjct: 60  GYELMDYIRPLE----IPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 7   NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 237

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +    + G+ V+ A +  +A     K + P+ +++D  +  +  
Sbjct: 10  KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNK-INPDLIILDLMLPDICG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  + D E ++ G   GA+ ++ KPF+   L   ++ L +
Sbjct: 69  EDICEMLRKRSK---VPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLR 125

Query: 120 MQK 122
             +
Sbjct: 126 RTE 128


>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
 gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
          Length = 254

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 223

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R++ R      G  + EA +  +A E C +    + +++D  M  + 
Sbjct: 1   MYNILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHN-FDIIILDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R++    D  V  L    +    I G   G + +++KPF+ + L   +  + 
Sbjct: 60  GFSTCHEIRKI---CDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIM 116

Query: 119 QMQKSKD 125
           +  +  +
Sbjct: 117 KRTRKAE 123


>gi|319783842|ref|YP_004143318.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169730|gb|ADV13268.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 457

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         F V  AT+  +A E CE     + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCE-NGKVDVVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + V  +         + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +   +
Sbjct: 123 KSLTDELRLRAS 134



 Score = 57.1 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60
            +LL+D      +  + +        V              +      ++     +   L
Sbjct: 157 KVLLIDERKTSVERIQKMLRDRADLDVT--HDPHAGFFQAAETSYECVMISTAFADFDPL 214

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     V +  L  E + E++I G   G N +L++P +++ L   +R   + 
Sbjct: 215 RLCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274

Query: 121 QKSKDENQ 128
           ++  D+ +
Sbjct: 275 KRYNDQLR 282


>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 226

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD    +R++ +    + G   + EA+   EA    ++  + + +V+D  M  +
Sbjct: 1   MAKILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASV-DLVVMDIMMPNM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      + V  L  + +  +++ G   G + +L+KPF    L   ++ L
Sbjct: 60  DGWELCREIRRNTG---IPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKAL 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LKRYQ 121


>gi|262198125|ref|YP_003269334.1| response regulator receiver protein [Haliangium ochraceum DSM
           14365]
 gi|262081472|gb|ACY17441.1| response regulator receiver protein [Haliangium ochraceum DSM
           14365]
          Length = 317

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D    + ++   +    G+ V  A    +A E       P+ L+ D  M  V   
Sbjct: 11  RILVADDDAWILRMVTTVLKKRGYEVDTAPDGEQAYERALSNP-PDLLITDVMMPNVDGW 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P   DV V +L      +  I G R GA+ +L KPF  E L   +    + 
Sbjct: 70  TLVKQMREHPSLCDVPVIFLTALSADDDRIHGFRLGADDYLPKPFRFEELDLRVARTLRR 129

Query: 121 QKS 123
            ++
Sbjct: 130 TRN 132


>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + ++ R      G+ V          +        + L++D  +  + 
Sbjct: 1   MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTY-DILIVDLMLPQLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++    ++ +  L    +    I G   GA+ +L KPF+   L   +R   + 
Sbjct: 60  GF-EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKR 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
 gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
          Length = 223

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    + +   H+ +  G+ V  A +  +  E   +    + L++D  + G  
Sbjct: 1   MK-ILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNY-DLLILDWMLPGKP 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +R    G +  V +L  +   +  + G  AGA+ +L+KPF    L   +R L 
Sbjct: 59  GLSICQELRSQ--GQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|37676245|ref|NP_936641.1| response regulator [Vibrio vulnificus YJ016]
 gi|37200786|dbj|BAC96611.1| response regulator [Vibrio vulnificus YJ016]
          Length = 378

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L +   + V  AT+  +A   C+   LP+ +++D  M  +   
Sbjct: 7   TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSH-LPDIVLLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L  +   E    G   GA  ++LKP +   L   +R   ++
Sbjct: 65  EVCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKL 124

Query: 121 QKSKDEN 127
           + + +E 
Sbjct: 125 KHAMEEL 131


>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
 gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1191

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LLV+   I +K+   L   +G  V  A +   A +   K    + +++D  M  +    
Sbjct: 937  ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPY-DLILMDMMMPVMDGLE 995

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
               H+R    G  + +  +              AG + ++ KP   E L+  +
Sbjct: 996  ATRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 1048



 Score = 99.9 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL------LPNYLVIDESME 57
           +L+VD + + R+V   + + FG    +A S   A ++  ++         + +++D  M 
Sbjct: 790 ILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQMP 849

Query: 58  GVLEFIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +  F     VR +P  + + +  L             + G   +L KP  R+ L   + 
Sbjct: 850 EMDGFSTAPLVRGLPNCSSLPMVLLSSAGMKGDGQRSRQVGIAGYLSKPIARQDLLQMVS 909

Query: 116 ELPQMQKSKDE 126
            + QM K + E
Sbjct: 910 GVLQMHKVRPE 920


>gi|260463925|ref|ZP_05812121.1| response regulator receiver modulated diguanylate cyclase
           [Mesorhizobium opportunistum WSM2075]
 gi|259030300|gb|EEW31580.1| response regulator receiver modulated diguanylate cyclase
           [Mesorhizobium opportunistum WSM2075]
          Length = 457

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         F V  AT+  +A E CE     + +++D  M  +  F
Sbjct: 4   RILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCE-NGKVDVVLLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + V  +         + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +   +
Sbjct: 123 KSLTDELRLRAS 134



 Score = 68.7 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60
            +LL+D      +  + +        V   +          +      ++     +   L
Sbjct: 157 KVLLIDERKSSVERIQKMLRDRADLDVT--SDPHAGFFQAAETPYECVMISTAFADFDPL 214

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     V +  L  E + E++I G   G N +L++P +++ L   +R   + 
Sbjct: 215 RLCSQLRSLDRTRFVPIILLADEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRR 274

Query: 121 QKSKDENQ 128
           ++  D+ +
Sbjct: 275 KRYNDQLR 282


>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
 gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD  H +           G+ +F+A +  EA E   ++   + +++D  M  +   
Sbjct: 5   KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQK-IHCILMDVMMPKMDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I  +  +   +++ +  L  + +    + G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  IQAIMHIRETSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRR 120


>gi|169828266|ref|YP_001698424.1| ethylene receptor [Lysinibacillus sphaericus C3-41]
 gi|168992754|gb|ACA40294.1| Ethylene receptor [Lysinibacillus sphaericus C3-41]
          Length = 1015

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   I  +V   +  +  + +   TS  EA   C +    + ++ D  M  +   
Sbjct: 683 RILVVDDEPINLRVVETILANEPYDIVTVTSGIEAL-VCIQSHEWDLVISDVMMPKMSGY 741

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+    TD+ V  L      + +  G  AGAN ++ KP +   LR  +  L ++
Sbjct: 742 ELVRLIRKQFSITDLPVLLLTARSQPQDLENGFLAGANDYVTKPVDALELRSRVAALIKV 801

Query: 121 QKSKDENQFLDA 132
           ++S  E   ++A
Sbjct: 802 KRSIQERHRMEA 813


>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
 gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+ +    +R++        GF V EA    +A E  E       +++D  M     
Sbjct: 3   NKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKKDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R     ++V +  L      +  +AG  AGA+ ++ KPF+   L   ++ L +
Sbjct: 63  YDACREIR---GKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLR 119

Query: 120 MQKSKD 125
              S D
Sbjct: 120 RTSSND 125


>gi|119511391|ref|ZP_01630503.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119463936|gb|EAW44861.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 295

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+++     R +        GF    A +     E  +   LP+ +V D  M  +  
Sbjct: 7   KTILIIEDDATTRNLYAKGLEAEGFKTIVAENGRIGIEKAQT-YLPDLVVCDIVMPDMDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM----- 114
              +  +RQ P+   +   +L        +  G   GA+ +L KP   E L  A+     
Sbjct: 66  YSVLQRMRQDPVTAIIPFIFLTGSDHQTDIRKGMELGADDYLTKPCTLEQLLKAIAIRLE 125

Query: 115 -RELPQMQKSKDENQFLDAI 133
            + L     +   +Q  +++
Sbjct: 126 KQSLLHRWYATKSHQMPESV 145


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 124 DALARDSRIDA 134


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + ++  +     G+         E  +    +   + +++D  + G+  F
Sbjct: 4   KVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAAL-QRSFDLIILDIMLPGLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    +  L      E+++ G + GA+ ++ KPF    L   +  + +  +
Sbjct: 63  EILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122

Query: 123 SKD 125
             +
Sbjct: 123 LDE 125


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+ D      +         GF    A    EA     +   P+ +++D  +     L
Sbjct: 12  TVLIADDEPSFVEALVLGLTREGFETIVANDGEEAL-ALSRSHHPDLILLDVMLPRLSGL 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +RQ      V +  +         + G   GA+ ++ KPF    L   +R   + 
Sbjct: 71  DVCRTIRQESS---VPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRR 127

Query: 121 QKSKDENQFLDAI 133
            K + + Q  + I
Sbjct: 128 TKHQGQAQAAEEI 140


>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + ++  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|254524497|ref|ZP_05136552.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
 gi|219722088|gb|EED40613.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
          Length = 236

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD  + +R +        G+ V  A     A          + +V+D ++    
Sbjct: 1   MHRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADG-TAMRQLLDREHVDLIVLDLNLPRED 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +   ++  V  L    +    + G   GA+ +L KPF    L   +R + + 
Sbjct: 60  GLTLC-RDLRARSNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 118

Query: 121 QKSKDEN 127
            ++   N
Sbjct: 119 TEALPAN 125


>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    +  + +  F   GF+V+EA    E      ++  P+  V+D  +  +  
Sbjct: 3   KRIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGL-RLIQDKTPDIAVLDVMLPQLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+     ++ +  L    +    + G   GA+ +++KPF+   +   ++ + +
Sbjct: 62  FEICRKLRKEG---NIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILR 118

Query: 120 MQKSKDEN 127
                 E+
Sbjct: 119 RSGKGTED 126


>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 242

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +F A    +  E  +  + P+ ++ D  M      
Sbjct: 16  KILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQT-IFPDLIISDIMMPRSNGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYISKPFDPDELSARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|124265328|ref|YP_001019332.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258103|gb|ABM93097.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 251

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESME 57
           M    +L+V+    +     +     GF      +   A +    +   P  +++D  + 
Sbjct: 1   MARAQILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLP 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F    R      D+ V +L    D    + G   GA+ ++ KPF+   L   +R +
Sbjct: 61  DLNGFELFKRIRERAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTV 120

Query: 118 PQM 120
            + 
Sbjct: 121 LRR 123


>gi|320158374|ref|YP_004190752.1| response regulator [Vibrio vulnificus MO6-24/O]
 gi|319933686|gb|ADV88549.1| response regulator [Vibrio vulnificus MO6-24/O]
          Length = 378

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L +   + V  AT+  +A   C+   LP+ +++D  M  +   
Sbjct: 7   TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSH-LPDIVLLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L  +   E    G   GA  ++LKP +   L   +R   ++
Sbjct: 65  EVCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKL 124

Query: 121 QKSKDEN 127
           + + +E 
Sbjct: 125 KHAMEEL 131


>gi|256819847|ref|YP_003141126.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
 gi|256581430|gb|ACU92565.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
          Length = 1347

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +  +R   +H+ N+  F V  A    E  E      +P+ +V D  M     +
Sbjct: 1095 TILVVEDNDDMRDYIQHILNEH-FHVLLARDGEEGLELAIAH-IPDLIVSDIMMPKRDGI 1152

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119
              +  +R       + +  L       +++ G   G   ++ KPF+ + L   +   L  
Sbjct: 1153 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1212

Query: 120  MQKSKDE 126
             +K  ++
Sbjct: 1213 RKKLWEQ 1219


>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 230

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  + +      G+ V  +    +A    + E   + +++D  +  +  F 
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNEN-FDMVLLDVMLPKLDGFS 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               VR+    +DV +  +  + D    + G   GA+ ++ KPF    L   +R   +  
Sbjct: 65  VCKKVRE---FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRT 121

Query: 121 -QKSKDENQFLDA 132
            Q +  + + L A
Sbjct: 122 AQSAAQDGKVLKA 134


>gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
 gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain,
           putative [Rhodospirillum centenum SW]
          Length = 482

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    EA +    +  P+ +++D  M G+  F
Sbjct: 4   RVLVVDDVVPNVKLLAAKLTREYFDVITAYGGPEALDKIRSQS-PDIVLLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P    + V  +    D    + G  AGA+ FL KP N   L   +R L ++
Sbjct: 63  EVCERIRSDPSVMHIPVVMVTALSDVADRVRGLEAGADDFLTKPVNDVALFARVRSLVRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  ++
Sbjct: 123 KMMMDEWRLRES 134



 Score =  104 bits (262), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +L+V+ S I     R         V EA +   A E    +     ++ +    E  L 
Sbjct: 157 RILVVEDSSIDMDKIRETLARDRDGVVEAENCAAALELALSQDFELVIISLTLMREDGLR 216

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R       V +  L  E D +++  G   GAN +++KP +R  L    R   + +
Sbjct: 217 LCSQLRSHERTRQVPILLLADETDMDRVAKGLELGANDYVIKPIDRNELMARTRTQVRRK 276

Query: 122 KSKDENQ 128
           + +D  +
Sbjct: 277 RYQDRLR 283


>gi|218439941|ref|YP_002378270.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218172669|gb|ACK71402.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 124

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+ S   R++   L  + G+ V  A    EA EF ++   P+ +V+D  M  + 
Sbjct: 2   MRKVLLVEDSQAQREMISTLLRENGWNVSIACDGVEALEFVQQSS-PDLVVLDIVMPRMN 60

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 61  GYEVCRRLKSDPKTMNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPIELIGTIKQLL 120

Query: 119 QMQ 121
           + +
Sbjct: 121 RKE 123


>gi|75908776|ref|YP_323072.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75702501|gb|ABA22177.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 437

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD +    KV        G+    AT    A E  E    P+ +++D  M G+  F 
Sbjct: 12  VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAH-PDLILLDVMMPGIDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+  +  V ++    D    + G   GA  ++ KPF  E +   ++   ++ 
Sbjct: 71  TCRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKIS 130

Query: 122 KSKDENQF 129
                 + 
Sbjct: 131 HLTRTLEQ 138


>gi|73538366|ref|YP_298733.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 1152

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D +  +R+    L +   + V  A    +A        +   L+ D  M G   L
Sbjct: 642 RILVADDNADMRQYLARLLSK-DYEVELANDGQDALARIHARSV-ELLLTDVMMPGLDGL 699

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P   D+ +  L      E +  G  AGA+ +L KPF+   L   +    +M
Sbjct: 700 GLLHALRTDPKTADLPIIMLSARAGEESLAEGVEAGADDYLTKPFSARELLARVGTHVKM 759

Query: 121 QKSKDENQFLDAI 133
            + + E   L+A+
Sbjct: 760 ARFRRE--ALEAL 770



 Score =  104 bits (260), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 7/121 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD           L +  G  V  A    EA    E +  P+ +++D  +  +    
Sbjct: 1032 ILVVDDDQDSAWSLAALLDTCGHRVQTAHDGFEAIATAE-QYRPDVILMDIGLPTITGHE 1090

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R    G D+ +  +      E       AG ++ L+KP + + L      L Q +
Sbjct: 1091 TARRIRAESWGVDIVLIAVSGWGQEEDRRRSDEAGFDAHLVKPVDLDALLG----LLQRR 1146

Query: 122  K 122
            +
Sbjct: 1147 R 1147


>gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R          G+ V EA S  +A E   +    + +++D  + G+ 
Sbjct: 1   MTNILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELF-RNRNFDVVLLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F        +   V +  +  +   +  I G   GA+ +L KPF+ + L   +  L + 
Sbjct: 60  GFTVCQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRR 119

Query: 121 QKSKDE 126
               DE
Sbjct: 120 INVGDE 125


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA +   K    + +++D  +  V  
Sbjct: 3   KQVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMA-KNKEYDMVLLDLMLPKVDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  LSVCQQIRE---FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQK----SKDENQFLDA 132
                  ++  ++ ++A
Sbjct: 119 RTGKPAAAESRSRVVEA 135


>gi|160885643|ref|ZP_02066646.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483]
 gi|156109265|gb|EDO11010.1| hypothetical protein BACOVA_03646 [Bacteroides ovatus ATCC 8483]
          Length = 1368

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+V+ +  VR+  R LF    + V+EA +  E      KE LP+ ++ D  M     
Sbjct: 1114 KSLLIVEDNEDVREYIRSLFISK-YTVYEAGNGEEGVRMA-KEKLPDLIISDVMMPVKDG 1171

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R       +    L  + +   ++ G+R+GA+ +++KPFN E L+  +  L  
Sbjct: 1172 FTCCREIRTQQETAHIPFLMLTAKAEDVDVLQGSRSGADDYMMKPFNPEILKAKVDNLIL 1231

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1232 QREQLKR 1238


>gi|87303319|ref|ZP_01086112.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282214|gb|EAQ74175.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 400

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LL+D   I++ +   L    G  V  AT      E   +   P  ++ D SM G+  
Sbjct: 13  TTILLIDDDRILQHILSGLLKAQGCQVLTATDGSTGLELARRH-RPQLVLCDWSMAGMDG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +Q      ++   L       + + G  AGA+ FL KP     L   +R   +
Sbjct: 72  LEVCRRFKQDTHLAPIYFILLTSRSSLVERVEGLDAGADDFLSKPVEPSDLLARVRSGLR 131

Query: 120 MQKSKDENQFLD 131
           + ++  E   L 
Sbjct: 132 LYQANHELLVLS 143


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ +    V ++  +      + V  A    EA      E +P+ L++D  +     +E
Sbjct: 5   VLVAEDESAVSELLLYNLKREDYDVAIAADGEEAL-MMIDERIPDLLLLDWMLPKVSGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR   +  ++ +  L    +    I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 64  ICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRI 123

Query: 122 K 122
           +
Sbjct: 124 R 124


>gi|29347801|ref|NP_811304.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339702|gb|AAO77498.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1377

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            LL+++    +R+    LF    + V EA +  E     +K  +P  ++ D  M     F 
Sbjct: 1126 LLIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADK-YIPKLIISDIMMPVKDGFE 1183

Query: 64   --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R+      + + +L  + +    +   + G + +++KPFN E L+  ++ L + +
Sbjct: 1184 CSREIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQR 1243

Query: 122  KSKDEN 127
                + 
Sbjct: 1244 DLLRKL 1249


>gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi]
 gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi]
          Length = 458

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         + V  A    EA +   K+  P+ +++D  M  +  F
Sbjct: 4   KILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL T + +  +    D    + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  QVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLTRL 122

Query: 121 QKSKDENQF 129
           +   DE + 
Sbjct: 123 KMIIDELRL 131



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 43/129 (33%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      +   ++       +   +   EA +   K+   + ++ D         
Sbjct: 158 NILVVDEDVFQAEQIYNVLKQRFRSIKILSDPIEALKVGIKDNY-DLIISDMQFSKTDGL 216

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R         +  L  + D   ++     GAN +L  P +   L   +    + 
Sbjct: 217 RLCSGFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276

Query: 121 QKSKDENQF 129
           ++ +D  + 
Sbjct: 277 KRYQDALRM 285


>gi|260885496|ref|ZP_05735136.2| DNA-binding response regulator/sensor histidine kinase [Prevotella
           tannerae ATCC 51259]
 gi|260852493|gb|EEX72362.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           tannerae ATCC 51259]
          Length = 952

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+++ +  V            + V  A +     +  E EL+P+ ++ D  M  +  L
Sbjct: 669 RILIIEDNKDVAAYIGSQLTSR-YSVCYAENGKVGLQKAE-ELVPDLIITDLMMPEMGGL 726

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R   +   + +  +  +   E  I G  AGA+++L+KPFN E LR  + +L + 
Sbjct: 727 DVCRAIRTNEIVNHIPIIVITAKNTEEDRIKGLEAGADAYLVKPFNSEELRTRVEKLLEQ 786

Query: 121 QKSKD 125
           +    
Sbjct: 787 RSLLR 791


>gi|255010809|ref|ZP_05282935.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis 3_1_12]
 gi|313148611|ref|ZP_07810804.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
 gi|313137378|gb|EFR54738.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides fragilis 3_1_12]
          Length = 1331

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ +  +R    H  +D  + +   ++  EA     KE +P  ++ D  M  +  
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  A ++     + + +  L    D + ++ G + GA+ +++KPFN   L+  +  L  
Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATVANLLT 1186

Query: 120  MQKSKD 125
             +    
Sbjct: 1187 NRALLK 1192


>gi|256424531|ref|YP_003125184.1| Crp/Fnr family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256039439|gb|ACU62983.1| transcriptional regulator, Crp/Fnr family [Chitinophaga pinensis
           DSM 2588]
          Length = 352

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LL++ +  +R+    +     + V  A +     E   +E LP+ +V D  M    
Sbjct: 1   MKTILLIEDNDDIRENTAEILELANYRVLTAENGKTGVEMALEE-LPDLIVCDIMMPVLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +++ P   D    +L  + +      G   GA+ ++ KPF+   L  A+    
Sbjct: 60  GYGVLHLLQKHPEVEDTPFIFLTAKSERGDFRKGMEMGADDYITKPFSGTDLLNAVESRL 119

Query: 119 QMQKSKDE 126
           +  + K +
Sbjct: 120 KKSELKKQ 127


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R++ R +    GF V EA     A    E     + +++D  M  + 
Sbjct: 1   MAVILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAP-IDLIILDVMMPKMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR     TD+ +  L  + +    + G  +GA+ +L+KPF    L   ++ L 
Sbjct: 60  GFEVSEAVRS---FTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALL 116

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 117 KRYRITAE 124


>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + ++  + +++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL---PNYLVIDESME 57
           M  +L++D    +  + +            A S  E  +  ++       + +++D  M 
Sbjct: 1   MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F   ++++   +++ V  L  + + E  + G R GA+ +L KPF+   L   +  L
Sbjct: 61  YMDGF-QVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119

Query: 118 PQM 120
            + 
Sbjct: 120 IRR 122


>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 229

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 8/120 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +  +R+V   L ++ G++V EA +  EA   CE +   + +++D  M G+  F
Sbjct: 4   NVLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ---DLIILDIMMPGMDGF 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   T+V + +L  +   +    G  +G + +L+KPF+   L   +  L + 
Sbjct: 61  KTCRRIREL---TNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRR 117


>gi|229065284|ref|ZP_04200564.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716003|gb|EEL67739.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 226

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++   I+R+     F+  G+ V  A       E        N +++D  +  + 
Sbjct: 1   MKKVLIIEDEKIIREAVAQYFSHDGYEVITAEDSRIGLELFTAHDDINLIILDIMLPVMD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D +  + G   GA+ ++ KPF    L    + L 
Sbjct: 61  GWSVCRRIRKN---STVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRLF 117

Query: 119 Q 119
           +
Sbjct: 118 K 118


>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E  ++   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 115

Query: 119 QMQKSKD 125
           +  K ++
Sbjct: 116 RRVKKEE 122


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +        G+ V   +      E   K   P+ +V+D  +  +  
Sbjct: 3   KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEML-KPFRPDLIVLDLMLPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D    IAG   GA+ ++ KPF+ + L   ++ + +
Sbjct: 62  IQVCRELRKQSN--AVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFR 119

Query: 120 MQK 122
             +
Sbjct: 120 RIQ 122


>gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 241

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+   ++ +V R      G+ V  A     A         P+ +++D  + G+  
Sbjct: 15  RKILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASN-PDLIILDRMLPGLDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      + +  L      +  I G   GA+ ++ KP +   L   +  + +
Sbjct: 74  AEVCRRIRQ---TMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLR 130

Query: 120 M 120
            
Sbjct: 131 R 131


>gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator
           [Acaryochloris marina MBIC11017]
 gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator,
           putative [Acaryochloris marina MBIC11017]
          Length = 636

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++        G+ V  A +   A     + ++P+ +++D  M  +    
Sbjct: 23  ILIVDDTPHNLQILSTALTKQGYQVRGAANGSMAL-IGARNIMPDLILLDIKMPEMDGYT 81

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++   L  D+ V ++    D    +     G   ++ KPF    +   +       
Sbjct: 82  VCERLKSEALTQDIPVIFISALDDALDKVKAFTVGGVDYITKPFQLAEILARVENQLTIG 141

Query: 120 --MQKSKDENQFLDA 132
              ++ + +N+ L A
Sbjct: 142 RLQKEQRKQNERLQA 156


>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
 gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
          Length = 243

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 10  KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 69  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 127


>gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++  +     G+ VF AT+  EA     K + P+ +++D  M  +   
Sbjct: 7   KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARK-INPDLIILDIMMPKMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R MP   + F+ +L    +    IAG   GA+ ++ KP     L   +  + + 
Sbjct: 66  EACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRR 125

Query: 121 QKSKDE 126
               +E
Sbjct: 126 NSKGEE 131


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+VD   ++ K  R      G  V  A    EA     K    + +++D  +     
Sbjct: 3   NKILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALA-KSGEFDLILLDVMLPKLTG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    VR+    +DV +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQQVRE---FSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIR 118

Query: 120 MQKSKDENQF 129
             K     + 
Sbjct: 119 RTKKDRPEEQ 128


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   +E  P+ +V+D  +  +   
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTA-REFRPDAVVLDMMLPDMDGL 102

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAG 162

Query: 123 SKDENQFLDAI 133
           + D  +  +++
Sbjct: 163 AAD--RRSESV 171


>gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 242

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG- 58
            SLL+V+    +R+    +    GF V        A      E     + +V+D  + G 
Sbjct: 13  RSLLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGL 72

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L+    +R++       +  +         + G   GA+ +L+KPF    L    R L
Sbjct: 73  GGLDLCRELRRINNT--TPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRAL 130

Query: 118 PQMQKSKD 125
            +     +
Sbjct: 131 LRRSSQSE 138


>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R + +      G+ V E+    EA +    E   + +++D  +    
Sbjct: 1   MKKILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFY-EKPFDLVILDIMLPKKD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++    + V V  +    +    + G   GA+ ++ KPF+ +     ++ + 
Sbjct: 60  GWSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 KNK 119


>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 234

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 13  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCLELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|224540428|ref|ZP_03680967.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517942|gb|EEF87047.1| hypothetical protein BACCELL_05341 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1369

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +LLV+    VR           + + EA +  +  +    +  P+ ++ D  M     LE
Sbjct: 1116 VLLVEDDKDVRDYLHKSLE-NDYEIIEAANGVKGYDKAV-QFFPDLVLSDIMMPKRNGLE 1173

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              + ++       + V  +        +  G  AGA+ +++KPF+ + LR  ++ L Q +
Sbjct: 1174 LCSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLLQSR 1233

Query: 122  KSKDEN 127
            +   + 
Sbjct: 1234 EQLKKL 1239


>gi|95931396|ref|ZP_01314106.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
 gi|95132552|gb|EAT14241.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
          Length = 452

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R + + +  +  + V  A +  +A E  E     + ++ D  M  +   
Sbjct: 6   SILIVDDESAMRHLLQTILEEEEYQVDAAENGKQALEKVEHNHY-DLVLCDVRMPELDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +P    + V  +      E  +   + GA  ++ KPF  + +   +++  +  +
Sbjct: 65  GFLSRILPKFPSLTVIMMSAYGSLETALNCMKNGAYDYISKPFRPDEIILTLKKAQERLR 124

Query: 123 SKDENQFL 130
            + EN+ L
Sbjct: 125 LQRENETL 132


>gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 226

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +  ++     G+ VF A +  EA +   +   P+ +++D  M  +   
Sbjct: 8   RILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQH-RPHLILLDMMMPVMDGA 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P   D  V +L    + E+ +AG   GA+ +L KP   + L   ++ + + 
Sbjct: 67  QTCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKR 126

Query: 121 QKS 123
             +
Sbjct: 127 IDA 129


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF    A +  EA    E+    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGA-DVVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRSRSS---VPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 221

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK+ +      G+ V EA    E  +   +    + +++D  M  + 
Sbjct: 1   MKKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTY-DIVILDIMMPKID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D    + G     + +++KPFN + L   ++ L 
Sbjct: 60  GWSVCRKIREE---SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
 gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
 gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
           CMCP6]
 gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
          Length = 239

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 229

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V        G+          A +   ++  P+ +V+D  + G+  
Sbjct: 5   RKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDP-PDLVVLDIMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + + V  +   V+    + G   GA+ ++ KPF+   +   +  L +
Sbjct: 64  TAVCRELR---RFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
 gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one co [Salinibacter ruber M8]
          Length = 1392

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +  +R   R   +   + V  A    E     + E  P+ ++ D  M      
Sbjct: 1143 TVLVVEDNAGMRAYLREQLSGR-WTVRTAADGEEGWAAVQDE-APDLVLSDVMMPTVNGT 1200

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++         V  L      +  + G + GA+ ++ KPF+ E LR  +      
Sbjct: 1201 ELCEQIKSAEALRHTPVLLLTARAGTDAEVEGLKTGADDYVTKPFDAEELRQRIANHLAA 1260

Query: 121  QKSKDENQFLD 131
            +    E    +
Sbjct: 1261 RDHLRERHRSE 1271


>gi|120610742|ref|YP_970420.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax citrulli AAC00-1]
 gi|120589206|gb|ABM32646.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax citrulli AAC00-1]
          Length = 395

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   L  D  ++V  A+   +A    + +  P+ +++D  M G    
Sbjct: 39  TVLVVDDTPDNLALMATLLRDH-YLVKVASHGEKALRIAQSDPPPDLILLDIMMPGLDGY 97

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ + +L      E    G  AGA  ++ KP +   L   +     +
Sbjct: 98  EVCRQLKAHPASRDIPIIFLTARSTPEDERRGLAAGAVDYITKPISPPILLARVHTHLTL 157

Query: 121 QKSKD 125
           + + D
Sbjct: 158 KATAD 162


>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
 gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
 gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
 gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
 gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
 gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 238

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSK 124
              S+
Sbjct: 119 RHYSQ 123


>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 36  MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 94

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 95  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRAR 151

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 152 LRRSEEPAPEQL 163


>gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  +        G    +A    EA     ++L P+ +++D  + G+    
Sbjct: 14  VLVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLF-RQLKPDMVLLDIHLPGMDGL- 71

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R +       V  +    D    + G R GA+ +++KPF+   +   +R + +  ++
Sbjct: 72  DLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRVQA 131

Query: 124 K 124
           +
Sbjct: 132 Q 132


>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
 gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
          Length = 232

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D    + ++ R      G+    +    +      KE  P+ +++D  +     +
Sbjct: 7   KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKA-KEEKPDLILLDWMLPNISGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ      + V  L  +   +  + G   GA+ ++ KPF+ + L   +  + + 
Sbjct: 66  EVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRR 125

Query: 121 QKSK--DENQFLDA 132
                  E++ L A
Sbjct: 126 YGMNTGKESEELTA 139


>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 271

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    + ++        G+ V  A     A     +E  P+ +V+D  +  +   
Sbjct: 45  RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTA-REFRPDAVVLDVMLPDMDGL 103

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163

Query: 123 S 123
           +
Sbjct: 164 A 164


>gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  + +H F    F V    +  E        L P+ +V+D  + G+  
Sbjct: 3   RKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLART-LHPDLIVLDLMLPGLDG 61

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++ PL   + V  L  + D    I G   GA+ +++KPFN + L   ++ + +
Sbjct: 62  LSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILR 121

Query: 120 MQKSKDENQ 128
             + +   +
Sbjct: 122 RTEQEPAQR 130


>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + ++  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 227

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    VR+         G  V  A S  E         +P+ +V+D  + G+ 
Sbjct: 1   MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAA-VPDVVVLDWMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R  P    V +  +    D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GLEVCRRLRT-PERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L+V+    +R   +       F V EA +  E  E   K   P  +V+D  + G  
Sbjct: 1   MDKILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHK-PEVVVLDIMLPGVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     ++ +  L  +      ++G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GLEVCKTLRQ--EFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAIL 117

Query: 119 QMQKSKDE 126
           +   +  E
Sbjct: 118 RRVNAVKE 125


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+V+           +    GF V        A    ++    + +++D  + G   
Sbjct: 4   TRLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGA-DLILLDLMLPGLSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     + V V  L         + G   GA+ ++ KPF+   L   +R + +
Sbjct: 63  TEVCRTLRAR---STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLR 119

Query: 120 MQKSKDE 126
            +   +E
Sbjct: 120 RRVETEE 126


>gi|326796406|ref|YP_004314226.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326547170|gb|ADZ92390.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 237

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +  + + L +   F +  A +  E  +    +   + +++D  M  + 
Sbjct: 1   MQHILIIDDDIELTDLLKELLSFENFTISVAHNGEEGLDRI--DDTIDMVLLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R++   +D+ V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  G-IDTLRRLRESSDLPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRR 117

Query: 121 QKSKDENQ 128
             + + N+
Sbjct: 118 APNTETNR 125


>gi|317479492|ref|ZP_07938623.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316904312|gb|EFV26135.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1347

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R+  R   ++  + +   ++  EA     KE +PN ++ D  M  +  
Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIV-KEYMPNLVISDIMMPEMRG 1141

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + +  L      + +I G ++GA+ +++KPFN   LR  +  L  
Sbjct: 1142 DELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLT 1201

Query: 120  MQKSKD 125
             +    
Sbjct: 1202 NRALLR 1207


>gi|270293538|ref|ZP_06199740.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275005|gb|EFA20865.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1347

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R+  R   ++  + +   ++  EA     KE +PN ++ D  M  +  
Sbjct: 1084 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIV-KEYMPNLVISDIMMPEMRG 1141

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + +  L      + +I G ++GA+ +++KPFN   LR  +  L  
Sbjct: 1142 DELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLT 1201

Query: 120  MQKSKD 125
             +    
Sbjct: 1202 NRALLR 1207


>gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++      + G+ V +AT+  E  E  E   + + +++D  M  +   
Sbjct: 5   TILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILE-NTIVDLIILDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A +  +    ++ +  L  +      I G  +GA+ ++ KPFN   L   ++   +  K
Sbjct: 64  EACL-NIRKNRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYK 122


>gi|212694999|ref|ZP_03303127.1| hypothetical protein BACDOR_04537 [Bacteroides dorei DSM 17855]
 gi|212662452|gb|EEB23026.1| hypothetical protein BACDOR_04537 [Bacteroides dorei DSM 17855]
          Length = 1327

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R       +D  + V    +  EA     KE  P  ++ D  M  +   
Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEAC-IIVKEFWPELILSDIMMPEMGGD 1124

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L    D   ++ G + GA+ ++ KPFN + LR  +  L   
Sbjct: 1125 ELCVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLLAN 1184

Query: 121  QKSKDE 126
            +    E
Sbjct: 1185 RALLRE 1190


>gi|34557362|ref|NP_907177.1| two-component hybrid protein [Wolinella succinogenes DSM 1740]
 gi|34483078|emb|CAE10077.1| TWO-COMPONENT HYBRID PROTEIN [Wolinella succinogenes]
          Length = 401

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D +    ++   +  + G+++  A S  +  +   K   P+ +++D  M  +  F 
Sbjct: 12  ILIIDDTPENLRLLGSVLKEAGYLITMAKSGIQGLQAARKH-QPDLILLDIRMPEMDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R+     ++ V +L    D E ++ G   GA  ++ KPF+   L   +R   +++
Sbjct: 71  VLTRLREEENLGEIPVVFLTAHSDEESILRGLSLGAVDYVKKPFSPSELLLRVRNHLELK 130

Query: 122 KSKD----ENQFLD 131
             +D    + + L 
Sbjct: 131 FHRDHQNTQKELLA 144


>gi|67925981|ref|ZP_00519251.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67852170|gb|EAM47659.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 174

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LL+D    +R +        G+ V  A +  E      KEL P  ++ D  M G  
Sbjct: 1   MVQILLIDDDSTIRLLLERTLKRQGYDVVCAGNGEEGLVKA-KELHPAMIICDWVMPGVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    V+ +P     F   L      E  + G  AGA+ FL KP         +R   
Sbjct: 60  GLQVCRQVKSLPDLATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNEFIARIRAGL 119

Query: 119 QMQKSKDEN 127
           ++ +   + 
Sbjct: 120 RLHQLSQDL 128


>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +      GF V   T+     +  +KE  P+ +++D  + G+  
Sbjct: 3   KKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA          N +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q+   +D+ +  L  +      I G  +GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-EVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 119 TQGEVTN 125


>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +    E + +  ++D  + G+ 
Sbjct: 4   MSTILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQIL-SEHIVDVALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 234

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDE 54
           M  +LLV+     R+         G+ V EA     A E  E+   P      + +++D 
Sbjct: 1   MTRILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDL 60

Query: 55  SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            +      E    +R     ++V V  L  +      I G   GA+ ++ KP++   L  
Sbjct: 61  MLPRLSGTEVCRRIR---RSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVA 117

Query: 113 AMRELPQMQKSKDENQ-FLDA 132
            +  + +  + ++  +  L+A
Sbjct: 118 RVHAVLRRTREEEPAEPVLEA 138


>gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 460

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         + V  A    EA +   K+  P+ +++D  M  +  F
Sbjct: 4   KILVVDDVLSNVKLLEARLKAEYYTVSVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL T + +  +    D    + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  QVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLTRL 122

Query: 121 QKSKDENQF 129
           +   DE + 
Sbjct: 123 KMIIDELRL 131



 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D      +   ++       +   +   EA      E   + ++ D         
Sbjct: 158 NILVIDEDVHQAEQIYNILKQRFRSIKILSDPMEAL-KVGIENGYDLIISDMQFSKTDGL 216

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R         +  L  + D   ++     GAN +L  P +   L   +    + 
Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276

Query: 121 QKSKDENQF 129
           ++ +D  + 
Sbjct: 277 KRYQDALRM 285


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+      +  +   ++ GF+V  A +  +     E E   + +++D  + G+  +
Sbjct: 2   RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAE-ETDYDVIILDVMLPGMDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++  V +L    D    + G   GA+ +L+KPF    L   +R     Q 
Sbjct: 61  TV-IKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCL-RQS 118

Query: 123 SKDENQFL 130
           +  E++ L
Sbjct: 119 TSKESERL 126


>gi|148654494|ref|YP_001274699.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
 gi|148566604|gb|ABQ88749.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
          Length = 407

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  +   +  + G+    A +  +A    E     + +V+D  +     ++
Sbjct: 7   ILIVEDDPTIASLVGIVLREAGYRTLHADTAADALRLAETNP-FDLVVLDWMLPDTPGVQ 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + +  L  + +    +    AG + +L KPF  E L   +R L +++
Sbjct: 66  ICTALKERAGRRFLPILMLTAKGELSDRVTALDAGVDDYLSKPFYIEELMARVRALLRIR 125

Query: 122 KSKDE 126
            +++E
Sbjct: 126 AAENE 130


>gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
 gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R+         G+ V EA    EA         P+ +++D  +  +  
Sbjct: 6   KTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHE-PDVILLDLGLPDMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +P+     V  L +       +     GA+ +L KPF+   L   +R   + 
Sbjct: 65  -EELLRALPMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRR 122


>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 223

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMS 115

Query: 119 QMQKSKD 125
           +  K ++
Sbjct: 116 RRVKKEE 122


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+   ++    R+     G+ V  A+      +    E  P+ L++D  +  + 
Sbjct: 1   MSTILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAE-QPDLLILDVMLPKLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    T++ +  L    D    IAG   GA+ +++KPF+   L   +R + 
Sbjct: 60  GFSVCRILRRE---TNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAIL 116

Query: 119 QMQKSKD---ENQFLDA 132
           +    +    E + L A
Sbjct: 117 RRTDRQPTGVERELLTA 133


>gi|78486516|ref|YP_392441.1| response regulator receiver (CheY-like) modulated metal dependent
           phosphohydrolase [Thiomicrospira crunogena XCL-2]
 gi|78364802|gb|ABB42767.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thiomicrospira crunogena XCL-2]
          Length = 348

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      +V   L  + G+    AT   EA    + E   + +++D  M  +    
Sbjct: 7   ILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLAD-ENDFDLILLDIMMPRMDGYE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ + +L  +VD + +  G + GA  ++ KPF+ E L   ++   ++ 
Sbjct: 66  TCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLGAVDYITKPFHGEELIARVKTHLELY 125

Query: 122 KSKDENQF 129
            SK   + 
Sbjct: 126 ASKQLLKQ 133


>gi|27366537|ref|NP_762064.1| response regulator [Vibrio vulnificus CMCP6]
 gi|27358103|gb|AAO07054.1|AE016808_74 Response regulator [Vibrio vulnificus CMCP6]
          Length = 378

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L +   + V  AT+  +A   C+   LP+ +++D  M  +   
Sbjct: 7   TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSH-LPDIVLLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L  +   E    G   GA  ++LKP +   L   +R   ++
Sbjct: 65  EVCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKL 124

Query: 121 QKSKDEN 127
           + + +E 
Sbjct: 125 KHAMEEL 131


>gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 258

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  S+LL++    +R++        GF V  A       +    +  P+ +++D  +   
Sbjct: 1   MKPSILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRG-QALAMQYTPDLILLDLMLPKV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             L     +R+      + +  L      +  + G  +GA+ +L KPF+ E L+  ++ L
Sbjct: 60  DGLTLCQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKAL 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +  +  +      + V    +  +A E  +K L+ +++++D  +  +  
Sbjct: 3   KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLV-DFVIMDLMLPQLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  +       + +  L  +      I G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 62  IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + LV+  + +  + +    D G+ +        A E  EK  + + +++D  + GV  
Sbjct: 8   KKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKH-VWDAVILDLMLPGVDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 67  LEICRRIRQMSFY--LPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFR 124

Query: 120 MQKSKDENQFLDA 132
            Q++  +N  ++A
Sbjct: 125 RQEAMSQNLRMEA 137


>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +   +  + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +++ +    +  + ++     G+ V  A    EA      E  P+ LV D  M     +E
Sbjct: 7   IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEAL-MMINERQPDLLVCDWMMPKVSGIE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      ++ +  L    +    I G   GA+ +++KPF+   L   +R + +  
Sbjct: 66  VTRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRRI 125

Query: 122 K 122
           +
Sbjct: 126 R 126


>gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
 gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium
           zucineum HLK1]
          Length = 454

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V  A+    A      E  P+ +++D  M G+  F
Sbjct: 4   RILVVDDIEANVRLLEAKLTAEYYEVLTASDGPTALAMAAAE-RPDIVLLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    V V  +         +AG  AGA+ FL KP +   L   +R L ++
Sbjct: 63  SVCRRLKDDPETRHVPVVLVTALDGRADRVAGLEAGADDFLTKPIDDVMLLARVRSLTRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KAVIDELREREA 134



 Score = 66.8 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D +    +                T   +A       +    +         L F
Sbjct: 155 RILIIDDNVRQAQRVCTELAIE-HRPVIETDYDKALLSARGPVDLAIVNAGAKAFDGLRF 213

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A +R       + +  ++   + ++++     G N  L +P +   L    +   + ++
Sbjct: 214 CAQLRSDEATRGLPILAVVDFDERQRVVKALEIGVNDILARPIDPGELAARAKTQIRRKR 273


>gi|254412519|ref|ZP_05026293.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180829|gb|EDX75819.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 381

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD +     + + +    G+ +        A    EK   P+ +++D  M  +   
Sbjct: 10  RILAVDDAPDNLFLMQTILETEGYDLSLVEDGYSALAIVEKSP-PDLILLDVMMPQMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  +    +    I G  AGA+ F+ KP +   L   +R L ++
Sbjct: 69  EVTRRIRQNSSLPFIPILLITAY-EQSSAIEGLDAGADDFIRKPVDVGELLARVRSLLRL 127

Query: 121 QKSKDENQFLD 131
           + S DE   L 
Sbjct: 128 KHSIDEQVRLA 138


>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1145

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD   I   + RHL    G+ +  ++   +A     +E + + +++D  M      +
Sbjct: 738 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPV-DLILLDVMMPTLSGFD 796

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + V  L      + +  G  AGAN +L+KPF +E L   ++ L +  
Sbjct: 797 VCRRLREQHPKDKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVKALLEAS 856

Query: 122 KSKD---ENQFLD 131
             +    EN+ L 
Sbjct: 857 AGRASLVENRLLK 869


>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 253

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    EA E    E  P+ +V+D  +  +  F
Sbjct: 12  TILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNES-PDLVVLDVMLPKLDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 71  AVCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRR 127


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +V +      G+    A +  E      +E   + +++D  +  +   
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQY-REQQWDLILLDIMLPEMSGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R     +   V  L  + + E  + G   GAN ++ KPF  E L   +R   
Sbjct: 63  DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118


>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
           [Arthrospira platensis NIES-39]
          Length = 227

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +        +  G+ V +A    +A     +    + L++D  +     L
Sbjct: 2   RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQA-GTLAQNHHYDLLILDWMLPHQSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R         + +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|265765934|ref|ZP_06093975.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|263253602|gb|EEZ25067.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
          Length = 1330

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ +  +R    H  +D  + +   ++  EA     KE +P  ++ D  M  +  
Sbjct: 1069 QRLLIVEDNDELRNYLTHTLSD-NYTIQTCSNGKEALTIV-KEYMPELIISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E  A ++     + + +  L    D + ++ G + GA+ +++KPFN   L+  +  L 
Sbjct: 1127 DELCAAIKNDIETSHIPIILLTALNDEKNILEGLKIGADEYIVKPFNIGILKATIANLL 1185


>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + ++  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     +K     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +++ V  L  + D +  ++G R GA+ +L KPF+   L   +  L +
Sbjct: 61  DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|146342170|ref|YP_001207218.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194976|emb|CAL79001.1| putative sensor histidine kinase with multiple PAS and a response
           regulator receiver domain (modular protein)
           [Bradyrhizobium sp. ORS278]
          Length = 1319

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 12/140 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L D +  +R     L  D  + V        A E   +   P+ ++ D  M      
Sbjct: 666 RVVLADDNSDMRDYVCRLLGD-DYEVEAVADGVAALETVRR-RRPDLVLTDVMMPRLDGF 723

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE---L 117
             +  +R  P   D+ V  L      E  + G  AGA+ +L KPF+   L   +R    L
Sbjct: 724 GLLKALRSDPQRRDIPVVILSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRVNIDL 783

Query: 118 PQMQKS-----KDENQFLDA 132
            +++++     +D N+ L+A
Sbjct: 784 ARVRRAAETTLRDLNERLEA 803



 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61
            ++L+V+ +  + +    L  D G+    A S  +A    E      + ++ D  M G+  
Sbjct: 1193 NVLVVEDNPEIGEFSTQLLEDLGYRTVLARSGLDALRLIEDNPDGFDLVLSDVVMPGMDG 1252

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                         + +       D   +  G R G +  + KP++ + L   +R++   +
Sbjct: 1253 VTLGQEIRRRLPTIPIVLNSGYSDV--LADGDRHGFS-LIHKPYSVDELSRVLRQVMAAR 1309


>gi|186681324|ref|YP_001864520.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186463776|gb|ACC79577.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 379

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD S     + + +  + G+ +  A +   A    +     + +++D  M  +   
Sbjct: 10  KILVVDDSPDNVFLIKTILEEEGYTISTAENGISALAELKASPC-DLVLLDLMMPDMDGY 68

Query: 62  -FIAHVRQMPLGTD-VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               H+R        + +  +        +  G   GA+ F+ KP   + L   +R L +
Sbjct: 69  EVTKHIRGDMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLLR 127

Query: 120 MQKSKDENQFLD 131
           ++ S DE   + 
Sbjct: 128 LKHSMDERDEIA 139


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    +      L    GF V  A     A    EK    + +++D  + G+ 
Sbjct: 1   MITILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKND-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++     V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKRLRKVSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
          Length = 232

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+ +    +  +        G+ V +     EA    + +   + +++D  M  
Sbjct: 1   MRRISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQS-IDLIILDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        VR      ++ + +L  +      + G   G + ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQVRAQ---YNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
 gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
          Length = 311

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 11/126 (8%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M +    +L+ D    +R + R L    G+ V  A +  EA      E   +  ++D +M
Sbjct: 80  MKNGKICILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVLASAE--VDLYLLDVNM 137

Query: 57  EGVLEFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +  F+A   +R+     +  + +L         + G  AGA+ +++KPF+   L   +
Sbjct: 138 PELSGFMAGSEIRKQF---NAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRV 194

Query: 115 RELPQM 120
           + + + 
Sbjct: 195 KAILRR 200


>gi|75910334|ref|YP_324630.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75704059|gb|ABA23735.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 440

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +    KV     +  G+    AT    A E  E    P+ +++D  M G+  F
Sbjct: 11  TILIVDDNPTNLKVLSDAISSLGWEALIATDGESAIEEAEYA-QPDIILLDVMMPGIDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + V +L    D    + G   G   ++ KPFN + +   ++   ++
Sbjct: 70  QTCTELKKKSSTKHIPVIFLTALTDQFDKVLGLVTGGVDYITKPFNLDEVLARIQVHLKL 129

Query: 121 ----QKSKDENQFLDAI 133
               ++ + +NQ LD +
Sbjct: 130 SFLTKELQIKNQELDKL 146


>gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 232

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R+  +    + G  V+EA    +A     +E   + +++D  M  +  
Sbjct: 4   NNILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDAL-MILQEEEIHLILMDIMMPKMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +      D+ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 63  IKTTFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G+ V  A     A ++       + +V+D  +  +   
Sbjct: 2   RILVVEDEPTLATQLADALRQAGYTVDTAADGGTA-QYMGAVETYDVVVLDLGLPVMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + V  L    ++ + +AG  AGA+ +L KPF+ E L   +R L +   
Sbjct: 61  TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120

Query: 123 SKDENQ 128
           S    Q
Sbjct: 121 SHASAQ 126


>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A +  + ++  + +++D  M  +  F
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMD-DVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|189466658|ref|ZP_03015443.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM
            17393]
 gi|189434922|gb|EDV03907.1| hypothetical protein BACINT_03033 [Bacteroides intestinalis DSM
            17393]
          Length = 1369

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +LLV+    VR           + + EA +  +  +    +  P+ ++ D  M     LE
Sbjct: 1116 VLLVEDDKDVRDYLHKSLE-NDYEIIEAANGIKGYDKAV-QFFPDLVLSDIMMPKRNGLE 1173

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              + ++       + V  +        +  G  AGA+ +++KPF+ + LR  ++ L Q +
Sbjct: 1174 LCSMIKNDIRIGHIPVILMTARSMVMHIREGFEAGADDYVIKPFSMDVLRIRIQSLLQSR 1233

Query: 122  KSKDEN 127
            +   + 
Sbjct: 1234 EQLKKL 1239


>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
 gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M   L+VD   ++ K  +      G+ V  A    EA +   KE   + +++D  +    
Sbjct: 1   MK-ALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKA-KETEYDIVLLDLMLPILT 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +D+ +  L  + D    I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 59  GYEVCQQIRE---FSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAII 115

Query: 119 QMQKSKD 125
           +  K K 
Sbjct: 116 RRNKRKA 122


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 9   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 68  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 124

Query: 120 MQKSK 124
              S+
Sbjct: 125 RHYSQ 129


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+V +      G  V EA    +A E   +E   + +V+D  M  + 
Sbjct: 1   MFKILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKA-REQDFDVIVMDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A+ +++    ++ V  L    +    + G   G + +++KPF+ + L   +  +   
Sbjct: 60  GFSAY-KEIKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTR 118

Query: 121 QKSKDENQFLD 131
            K  ++N+ ++
Sbjct: 119 NKKLNDNRVME 129


>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 200

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    +  V        G+ V       EA ++ E     + +++D  M  V 
Sbjct: 1   MK-ILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEY-DLVILDIMMPKVD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +    G    V  L      +  + G   GA+ +++KPF+   L   +R + + 
Sbjct: 59  GFEVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRR 118

Query: 121 QKSKDENQF 129
           +     N+ 
Sbjct: 119 KYGNSSNKL 127


>gi|212692265|ref|ZP_03300393.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855]
 gi|212665142|gb|EEB25714.1| hypothetical protein BACDOR_01761 [Bacteroides dorei DSM 17855]
          Length = 1357

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAIS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+ P    + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A     A     K+  P+ +++D  M G+  F
Sbjct: 8   RVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLM-KQFQPHVVILDVMMPGMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++M    +V V  L    + +  + G   GA+ +++KPF+ E L   +    + 
Sbjct: 67  EVCRMLKKME---NVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRN 123

Query: 121 Q 121
           Q
Sbjct: 124 Q 124


>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V    +      G+ V  A    EA E  +KE  P  +++D  +     +
Sbjct: 7   KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKED-PTLILLDWMLPVYDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    +DV +  L  +     + +    G + ++ KPF  E L   +R + + 
Sbjct: 66  TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 123 LKKTQEQ 129


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+    + ++ +      G+          A +    +  P+ +++D  + G+    
Sbjct: 18  ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQ-RPDLILLDIMLPGMDGWE 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK-PFNRETLRFAMRELPQM 120
               +R     +DV V  L    + E  + G   GA+ ++ K PF+   +   ++ + + 
Sbjct: 77  ICRQLR---TFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRR 133

Query: 121 QKSKDE 126
                +
Sbjct: 134 NALVQQ 139


>gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L+++    +R          G+ V EA +  EA E    E   +  ++D  +    
Sbjct: 1   MDKILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTS 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E   ++R+     ++ V  L  +   +  I G ++GA+ +++KPF+ + L   ++ L 
Sbjct: 61  GIEICKYIRK--EFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALI 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRVK 122


>gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 232

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    +       + V    S  EA +        + +++D  MEG+  
Sbjct: 4   KKILVVDDDEDICLTIKQYLELHHYQVETVHSGAEALKMI--SGDVDLIILDIMMEGIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      D  + ++  +   E  +     G + ++ KPF+ + L+  +    +
Sbjct: 62  MELCRMIRDR---VDCPILFVSAKTLEEDKVQALSIGGDDYITKPFSLKELKARIDSHLR 118

Query: 120 MQKSKDENQF 129
            ++    N+ 
Sbjct: 119 REERIRSNER 128


>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 225

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +      + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  + +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7]
 gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +         F VF A++  EA E  E  + PN +V+D  +  + 
Sbjct: 1   MK-ILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFEL-VQPNLIVLDLMLPDIS 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +DV +  L  +     ++ G + GA+ +++KPF+ + L   +  + 
Sbjct: 59  GTVICQKIRK---TSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVL 115

Query: 119 QMQKS 123
           +   S
Sbjct: 116 RRSDS 120


>gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 435

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    +V   +  + G+ + +A +   A    + +  P+ +++D  M  +    
Sbjct: 13  ILIVDDTPNNLRVLSSILQEQGYEIRKAVNGKMAIRSVQADP-PDLVLLDIKMPDLDGYQ 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + ++ +    D+ V +L    D    +   + G   ++ KPF  E +   ++    ++
Sbjct: 72  VCSQLKAIEATRDIPVIFLSALDDVFNKVLAFQVGGVDYITKPFQVEEVLVRVKTHLTLR 131

Query: 122 KSKDENQF 129
           +   + + 
Sbjct: 132 RLTKDLEL 139


>gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
 gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Fulvimarina pelagi HTCC2506]
          Length = 454

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD S I  K+         F V +A++  EA   C  E L + ++ D  M      
Sbjct: 4   RILIVDDSAINLKLLEARLTAEYFDVVQASNGEEALAICRSEPL-DLVLSDVMMPEVDGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P  T + V  +         + G  AGA+ FL KP     L   +R L ++
Sbjct: 63  ELCRALKSDPRTTHLPVVLITALDQPSDRVRGLEAGADDFLTKPVRDLPLFSRVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           ++  DE +   
Sbjct: 123 KQMTDELRRRA 133



 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 5/120 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +++V     ++          G  V E      A    +K       V+D       +  
Sbjct: 156 IVVVSDHARLQARIARSLQTIG-SVREFADYDTAFAAVQK-RQVMLTVVDLVGGNGTDPI 213

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F+A  R       + +  +    D          GA  ++ +P +   L    R     
Sbjct: 214 RFLARCRASEKSRGMPIIAITAADDDRTAAKALEIGAYDYVQRPVDCNELVARSRTQLAR 273


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 5   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 64  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 120

Query: 120 MQKSK 124
              S+
Sbjct: 121 RHYSQ 125


>gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  GF V EA                + +++D  M  + 
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAI--NSDIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDEN 127
             +  +N
Sbjct: 118 TSNTQKN 124


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +V +      G+    A S  +  E  +     + +++D  +  + 
Sbjct: 1   MARILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAW-DLVLLDVMLPELS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L         ++G   GAN ++ KPF  E L   +R   + 
Sbjct: 60  GLEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRT 119

Query: 121 QKSKDENQ 128
            ++++  +
Sbjct: 120 VQTRERVE 127


>gi|148262168|ref|YP_001228874.1| two component, sigma-54 specific, Fis family transcriptional
           regulator [Geobacter uraniireducens Rf4]
 gi|146395668|gb|ABQ24301.1| two component, sigma-54 specific, transcriptional regulator, Fis
           family [Geobacter uraniireducens Rf4]
          Length = 452

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 2/132 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +R+V  +   + G+ V  A+S  E   +   +  P+ ++ D  M G+
Sbjct: 1   MKAKILVIDDDSSLRRVLEYNLQEEGYEVQAASSGEEGL-YLFGQSRPSLVITDMKMSGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +          +  V  +      +  +   +AGA  ++ KPFNR+ L+  +R+  Q
Sbjct: 60  DGLMVLKSVKERSPETLVIIITAFGTVDVAVEAMKAGAYDYITKPFNRDALKLTVRKALQ 119

Query: 120 MQKSKDENQFLD 131
                +EN+ L 
Sbjct: 120 FTGLAEENKRLK 131


>gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2]
          Length = 240

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQ-MDRLLERENFHLMVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQM  G ++ +  L  + D    I G   GA+ +L KPFN   L    + + + 
Sbjct: 66  SICRRLRQM--GNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123

Query: 121 QKSKD 125
           + S+ 
Sbjct: 124 RNSEA 128


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    + ++ ++   + GF   +A +  +A +   +E + + +++D  + G+  
Sbjct: 3   KTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERV-DAVILDLMLPGIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + ++R  P   ++ V  L  + +    + G   GA+ +L KPF    L   ++ + +
Sbjct: 62  LEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLR 121

Query: 120 MQK------SKDENQFLD 131
             +      +K +N+FL 
Sbjct: 122 RAEAPGEPGAKKDNRFLK 139


>gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 237

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD    +  + +      G+ V  A    EA +  E+E  P+ +++D  +     
Sbjct: 3   KTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEE-QPDLMLLDIMLPKRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+        +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYDF---PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
 gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
          Length = 240

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|222055651|ref|YP_002538013.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221564940|gb|ACM20912.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. FRC-32]
          Length = 452

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D  + +R+V  +   + G+ V  A+S  E   F   +  P+ ++ D  M G+
Sbjct: 1   MKGKILVIDDDNSLRRVLEYNLKEEGYEVQAASSGEEGL-FLFGQSQPDLVITDMKMSGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +          +  V  +         +   +AGA  ++ KPFNR+ L+  + +  Q
Sbjct: 60  DGLMVLKSIKERSPETLVIIITAFGTVNIAVEAMKAGAYDYITKPFNRDELKLIVLKALQ 119

Query: 120 MQKSKDENQFLDA 132
                +EN+ L +
Sbjct: 120 FNGLAEENKRLKS 132


>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V    +      G+ V  A    EA E  +KE  P  +++D  +     +
Sbjct: 7   KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKED-PTLILLDWMLPVYDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    +DV +  L  +     + +    G + ++ KPF  E L   +R + + 
Sbjct: 66  TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122

Query: 121 QKSKDEN 127
            K   E 
Sbjct: 123 LKKTQEQ 129


>gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 290

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 4/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+VD ++I  K+   L  D  + +  A     A      E  P+ +++D  M  + 
Sbjct: 1   METILVVDDTNINIKILVELLGDK-YDIIVAIGGESAINIASSE-QPDLILLDIMMPVMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++Q P   D+ + +L  + D + +      G + ++LKPF  + L   ++   
Sbjct: 59  GFEVCRRLKQNPKTNDIPIIFLTAKTDEDSIERAYEMGGSDYILKPFKPKELMARVKTHL 118

Query: 119 QMQKSKDENQFLDA 132
           ++Q      ++L +
Sbjct: 119 KIQNLIKNLEYLSS 132


>gi|209523400|ref|ZP_03271955.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
 gi|209496142|gb|EDZ96442.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
          Length = 438

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L VD       +   L    G+    A S   A E       P+ +++D  M  +  F 
Sbjct: 8   ILWVDDEPANLVLLEDLLMAEGYDTTLAESGPRAIELA-TNNPPDLVLLDIMMPDMNGFE 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+  +     + +L    D E  + G     + ++ KP N + L   +  + ++ 
Sbjct: 67  VCDRLREHDILQTTPIIFLTALDDEESRLKGLEKMGDDYITKPINIKLLLAKIHNIIKLH 126

Query: 122 KSKD 125
           K ++
Sbjct: 127 KMRN 130


>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
 gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
          Length = 230

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +      GF V  A             +  + +++D  + GV  
Sbjct: 3   KRILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLA-VEFDLIILDLMLPGVDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R      +  +  +  + D    I G   GA+ ++ KPF+   L   ++    
Sbjct: 62  FEICRQIRGQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118

Query: 120 MQK 122
             +
Sbjct: 119 RYE 121


>gi|162454291|ref|YP_001616658.1| response regulator [Sorangium cellulosum 'So ce 56']
 gi|161164873|emb|CAN96178.1| response regulator [Sorangium cellulosum 'So ce 56']
          Length = 464

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R     L    G+ V  A    EA E    E  P+ ++ D  M  +   
Sbjct: 10  RVLVVDDEASARSGLEKLLRQEGYTVDAAADGVEAVEVA-AERPPDVVITDLKMPRMDGV 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       + V  +    D    +   RAGA  +L KP + + L   +    +   
Sbjct: 69  ALLGKLREQDPALPVIVVTAFGDVTSAVLAMRAGAEDYLTKPVDFDALLLTLERALERSA 128

Query: 123 SKDENQFL 130
            + E + L
Sbjct: 129 LRVEAENL 136


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   +E  P+ +V+D  +  +   
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTA-REFRPDAVVLDMMLPDMDGL 102

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162

Query: 123 SKDE 126
           + D 
Sbjct: 163 AADR 166


>gi|71906611|ref|YP_284198.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
 gi|71846232|gb|AAZ45728.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Dechloromonas aromatica RCB]
          Length = 994

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD + I  +    +    G     A     A  +   E  P+ +++D  M  +    
Sbjct: 24  ILVVDDTPINLETLAEMVRHAGANARVANCGATALRYARLEPRPDLILLDIMMPDMDGHA 83

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +A +R+MP   D+ V ++    D  +   G R GA  ++ KP     L   +R   +++
Sbjct: 84  VLAELRRMPETRDIPVIFVTALDDQSEEERGIREGAADYVSKPVKMSVLIARIRAHLEVR 143

Query: 122 KSK 124
           +++
Sbjct: 144 RAQ 146



 Score = 99.5 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LLLVD    V      L    G+ +  ATS  EA +   K+ +   ++ D+ M  +  
Sbjct: 860 QTLLLVDDEPNVLSSLTRLLRREGYAILTATSPTEAFDLLAKQPV-QVVISDQRMPDMSG 918

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGA-NSFLLKPFNRETLRFAMRELPQM 120
                R   L        L    D + +      GA   FL KP++ + LR  +RE  ++
Sbjct: 919 TEFLSRVRQLYPATIRLVLTGYTDLQSVTDAINRGAIYKFLTKPWDDDQLREQIREAFRV 978

Query: 121 QKSKDENQFLDA 132
                E  F+ A
Sbjct: 979 VHLNQEQNFIPA 990


>gi|332982072|ref|YP_004463513.1| Fis family two component sigma-54 specific transcriptional
           regulator [Mahella australiensis 50-1 BON]
 gi|332699750|gb|AEE96691.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Mahella australiensis 50-1 BON]
          Length = 449

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R V         +    A    E  +  +K    + +++D  +  +   
Sbjct: 4   RILIIDDEERMRWVLCKALEQESYEAEAAGDGIEGLKMLDKHS-IDLVLLDMRLPIMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L   + V  +      E  +A  +AGA  ++ KPF+ + L   +++   + +
Sbjct: 63  EVLKRIKELYPSLPVIIITAYGSIEMAVAAVKAGATDYITKPFDIDELVIQIKKALDVHR 122

Query: 123 SKDENQFLDA 132
             DE +FL +
Sbjct: 123 LVDEVEFLRS 132


>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
 gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR+V           V EA    +A      E   + +V+D  + G+ 
Sbjct: 1   MARVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQAL-RAMSERPADIVVLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G +V +  L         I G   GA+ ++ KPF+   L   +  + + 
Sbjct: 60  GLEVCRRLRQAG-EVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKR 118

Query: 121 QKSKDE 126
                E
Sbjct: 119 TGHSGE 124


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+ D    +  +        G+ V +A+   EA    E +   + LV+D  M  +   
Sbjct: 5   SILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQS-IDLLVLDIMMPKMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ + +L  +      + G   GA+ ++ KPF    L   +    + 
Sbjct: 64  EVTRRIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRR 120


>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLVD    + K+ +    + G+ +  A    EA E   +E   + +V+D  M  +   
Sbjct: 5   TILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNRE-QIDVMVLDVMMPNMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++         +  L  +      I G   GA+ ++ KPF+   L   ++   +  +
Sbjct: 64  EACMKIRE-TEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVR 122


>gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           + +VD    +R++     +  G+      S  EA E  +    P+  V+D  + G+    
Sbjct: 8   IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASP-PDLWVLDLMLPGMDGYE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V +  +         I G   G++ +++KPF+   L   ++   Q Q
Sbjct: 67  LCRRIRNEAE---VPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQRQ 123

Query: 122 K 122
           +
Sbjct: 124 Q 124


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +        +D  ++V  A    EA E  +     + +++D  +  + 
Sbjct: 1   MK-ILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDV-FSYDLILLDVMLPKMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  +      E  ++G   GA+ +L+KPF  + L   +R L + 
Sbjct: 59  GITLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRR 118


>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
 gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
          Length = 222

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +RK+ +  F   GF V EA    +  +   KE   + +++D  +  + 
Sbjct: 1   MQ-ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVF-KENSVDLVILDIMIPCLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V +  L  + + E  + G   G + ++ KPF+ + L   ++ L 
Sbjct: 59  GWTVCKSIRQNSK---VPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALL 115

Query: 119 QMQKSKDEN 127
           +    +++ 
Sbjct: 116 KRSGIEEKE 124


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       +A     KE LP+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRM-KERLPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKD 125
              + 
Sbjct: 123 AAPER 127


>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
 gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 241

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+ + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q 
Sbjct: 66  SICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 123 SK 124
            +
Sbjct: 126 QE 127


>gi|329961611|ref|ZP_08299670.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531603|gb|EGF58437.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1318

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            LLL +    +R+   +  +   + V       +A E   +E+ P+ ++ D  M      E
Sbjct: 1076 LLLAEDDPDMREYLTNSLSSE-YKVVGVPDGGKALEMA-REINPDIIISDVVMPVLEGDE 1133

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                ++     + + V  L    + E +I G  AGAN +++KPF+   L+  +R + Q  
Sbjct: 1134 LCRILKSSVDTSHIPVILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1193

Query: 121  QKSKD 125
            Q+ +D
Sbjct: 1194 QRLRD 1198


>gi|265750340|ref|ZP_06086403.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263237236|gb|EEZ22686.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1327

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R       +D  + V    +  EA     KE  P  ++ D  M  +   
Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEAC-IIVKEFWPELILSDIMMPEMGGD 1124

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L    D   ++ G + GA+ ++ KPFN + LR  +  L   
Sbjct: 1125 ELCVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLLAN 1184

Query: 121  QKSKDE 126
            +    E
Sbjct: 1185 RALLRE 1190


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + ++        GF VF A    E     +     + +++D  +  +
Sbjct: 1   MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSY-DLILLDVMLPKM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R+   G+ V +  L  + +    I G   GA+ ++ KPF+ E L   ++ L
Sbjct: 60  SGMEVCKRIRE---GSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKAL 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LRRTK 121


>gi|237727059|ref|ZP_04557540.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229433915|gb|EEO43992.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1327

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R       +D  + V    +  EA     KE  P  ++ D  M  +   
Sbjct: 1067 RILVVEDNDELRTYLIDSLSDI-YNVQACCNGKEAC-IIVKEFWPELILSDIMMPEMGGD 1124

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L    D   ++ G + GA+ ++ KPFN + LR  +  L   
Sbjct: 1125 ELCVTIKGDIETSHIPILLLTALGDERNILEGLKVGADDYITKPFNLKILRARIANLLAN 1184

Query: 121  QKSKDE 126
            +    E
Sbjct: 1185 RALLRE 1190


>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 242

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +R   +    D GF +  A    +  E  +  + P+ ++ D  M      
Sbjct: 16  KILLVDDEPGLRTAVKTFLEDEGFEISIAVDGEDGWEKAQT-IFPDLIISDIMMPRSNGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        V +L  +        G  AG + ++ KPF+ + L   ++ +   
Sbjct: 75  ALLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYIAKPFDPDELSARVKNVINR 134

Query: 121 Q-KSKDENQFLDAI 133
           Q +   E      I
Sbjct: 135 QERLLKEAARFADI 148


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    G+ V    +  EA E  +K    + +++D  + G  
Sbjct: 1   MTRILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGA-DLVLLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRTRSS---VPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 230

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + + +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  GL-DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            ++  ++Q
Sbjct: 119 AENAVQDQ 126


>gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7]
 gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7]
          Length = 233

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     N   +    A    +      +   P+ +V+D  M      
Sbjct: 7   KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASD-LPARIQRYSPDLIVLDRMMPDGDGA 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R    G D+ V  L    +    + G  AGA+ +L KPF+   L   +  + + +K
Sbjct: 66  EACRRLRQQGEDIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRRKK 125


>gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 234

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+    +R+         GF V  AT+   A +   ++   + +V+D  + G  
Sbjct: 10  MARLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSY-DLVVLDLMLPGIN 68

Query: 59  VLEFIAHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            L+    +RQ   G+    +  +         + G   GA+ +L+KPF    L    R L
Sbjct: 69  GLDLCRQLRQ---GSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRAL 125

Query: 118 PQMQK 122
            + Q+
Sbjct: 126 LRRQR 130


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 8   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 67  MEVCREVRKKFE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 123

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 124 RHYSQPAQE 132


>gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 253

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + +V      D G+    A+      E    E  P+ +++D  +      
Sbjct: 18  TILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAE-RPDLVILDVMLPQLSGF 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +     R    G    V +L  +   E  +AG RAG + +L KPF+       +  L + 
Sbjct: 77  DLCRTRRT--EGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRR 134

Query: 121 Q 121
           +
Sbjct: 135 R 135


>gi|255691944|ref|ZP_05415619.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622353|gb|EEX45224.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1348

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            LLLV+ +  +  +   + +   + V  A +  EA +   K+   + ++ D  M  +    
Sbjct: 1102 LLLVEDNEELLYLMEKILSRQ-YHVLVAKNGLEALDII-KDNEIDIIISDVMMPEMDGLE 1159

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++     + + V  L  +   E  I    AGA+ ++ KPF  + L   +      +
Sbjct: 1160 LCRNIKSNLETSHIPVILLTAKNTAEDRIECYNAGADGYISKPFELKILEARINNFIIYK 1219

Query: 122  KSKDEN 127
            KSK E 
Sbjct: 1220 KSKQEE 1225


>gi|224537550|ref|ZP_03678089.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520863|gb|EEF89968.1| hypothetical protein BACCELL_02429 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1345

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++LLV+     R     L +   + V EA    E  E       P+ ++ D  M     L
Sbjct: 1095 TILLVEDDKEFRHYMFELLSKK-YNVLEAGDGEEG-ERIATTKFPDLIISDIMMPKVDGL 1152

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L      E  + G  +GA+ ++ KPFN + L   +++L   
Sbjct: 1153 ELCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1212

Query: 121  QKSKDE 126
            +K++ +
Sbjct: 1213 EKARQK 1218


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V +      G+ V        A+E       PN +V+D  + G+   
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFV-NFSPNLVVLDMILPGIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   ++V V  L  + +    +     GA+ +++KPF  + L   ++ + +   
Sbjct: 66  -EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124

Query: 123 SKDEN 127
            ++ +
Sbjct: 125 GEEPD 129


>gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator
           fusion protein [Robiginitalea biformata HTCC2501]
 gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator
           fusion protein [Robiginitalea biformata HTCC2501]
          Length = 941

 Score =  139 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLV+ +  +R+       D  +    A    E  +       P+ ++ D  M  +    
Sbjct: 696 VLLVEDNPDMRQFICDGLIDA-YRTLTARDGEEGLKLAISRN-PDLVITDLMMPRMDGVE 753

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
               ++     + + V  L      E  + G   GA+ +L KPF+   LR  +  L +  
Sbjct: 754 MTEKLKTRIETSHIPVVMLTARAGMENKLEGLETGADDYLTKPFDTRELRVRVANLIRQR 813

Query: 121 QKSKD 125
           Q+ +D
Sbjct: 814 QRLRD 818


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA +  E           + +++D  M  + 
Sbjct: 1   MPHILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALL--NDQIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++    +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GM-ETLKRLRETWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRR 117

Query: 121 QKS 123
            +S
Sbjct: 118 TQS 120


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD    + ++   +    GF      +   A E   +   P+ +++D  + G+  +
Sbjct: 8   TILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRST-PDLVLLDLMLPGMNGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     ++V +  L  + D E ++ G  AGA+ ++ KPF    L   +R   + 
Sbjct: 67  EVCQQIR---RSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRP 123

Query: 121 QKSKD 125
           ++S+ 
Sbjct: 124 RESRQ 128


>gi|254220896|pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
           Subtilis
 gi|254220897|pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
           Subtilis
          Length = 130

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  +        G+ V  A    EA E  E EL P+ +++D  +     
Sbjct: 3   KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+     D+ +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  VEVCREVRKK---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLR 118

Query: 120 MQ 121
            Q
Sbjct: 119 RQ 120


>gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116]
 gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116]
          Length = 229

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA            E   + +++D  M  + 
Sbjct: 1   MAKILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINSE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDE 126
             S  +
Sbjct: 118 TSSTQK 123


>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +      G+ +  A    +A +    E +P+ +++D  +  +  
Sbjct: 3   KKILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKV-SEFIPDLVLLDVMLPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      + +  L  + +    + G   GA+ ++ KPF    L   +    +
Sbjct: 62  FQVCRKIRESFS---MPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFR 118

Query: 120 MQKS 123
             ++
Sbjct: 119 RMEA 122


>gi|313115296|ref|ZP_07800772.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622380|gb|EFQ05859.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 231

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LLVD    V ++   +F   G+  +  A S  EA    ++E  P+ +V+D  M  +  
Sbjct: 5   KILLVDDDRDVLEMLLSIFRRAGYTNLRTAASGAEALRIWQEE-QPSLIVLDVMMPDMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F + ++++   + V V  L    + E  I G   GA+ +L KPF  + L   +  +    
Sbjct: 64  F-SVLKKIRRTSRVPVLMLTARGEAEDRIEGLEIGADDYLAKPFLPKELLLRVGAILSRA 122

Query: 122 KSKDENQFLD 131
             + +N+ ++
Sbjct: 123 YPR-QNEMVE 131


>gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 216

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A +  EA +    + +P+ ++ D  M  +  
Sbjct: 10  KRLLLIDDDPNLILLVKDYLEFRGYDVITAENGREALDVL-AQDIPDMIICDVMMPEMDG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + +VRQ P    V V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 69  YALVEYVRQDPSMNWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLR 128

Query: 120 M 120
            
Sbjct: 129 Q 129


>gi|119489827|ref|ZP_01622582.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
 gi|119454255|gb|EAW35406.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF &  EAL
           domains) with Response Regulator Receiver modulation
           [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 58/132 (43%), Gaps = 4/132 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +++VD +     V  ++ +  G+ V  A     A    +++   + +++D  M G+
Sbjct: 7   MKSKIIIVDDNSQNLGVLFNILDGLGYDVRVAQDGESALVKIKRDPA-DLILLDVMMPGI 65

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F   + ++  P    + + ++    +    + G + GA  ++ KPF+ + +   ++  
Sbjct: 66  NGFETCSRLKSDPSLAKIPIIFMTALSETIDRLKGLQLGAVDYITKPFSHDEVIARIQLH 125

Query: 118 PQMQKSKDENQF 129
            Q+ K+  + Q 
Sbjct: 126 LQLYKTTQQLQQ 137


>gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 262

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    + + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRR 122


>gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 242

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    V  + +    + G+ V  A    +     +     + ++ D  +  + 
Sbjct: 15  MIKILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSY-HMIISDIILPHIS 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +   +  ++ +  L      +  + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 74  GFELCQKIRLIDKNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLKR 133


>gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + +      G  V  A    E  +   +E   + LV+D  M G   
Sbjct: 6   THILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKE-MKRLLEEREFDLLVLDLMMPGEDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++ + +++ +  L    +    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 65  LTLC-RELRVKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRT 123

Query: 122 KSKDE 126
           +++ +
Sbjct: 124 QAETQ 128


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +     +L    G+ V  A     A          + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGA-DIVLLDLMLPGMP 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     + V +  L  +     ++ G   GA+ ++ KP++   L   MR + 
Sbjct: 60  GTEVCRQLRLS---SHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|269139358|ref|YP_003296059.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda
           EIB202]
 gi|267985019|gb|ACY84848.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda
           EIB202]
 gi|304559263|gb|ADM41927.1| Acetoacetate metabolism regulatory protein AtoC [Edwardsiella tarda
           FL6-60]
          Length = 461

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    VR++        G     A+   EA +    +  P+ +++D  M 
Sbjct: 1   MKTRNRILIVDDEDNVRRMLTTALTLQGHETHAASHGAEALQRF-ADAPPDVVLMDIRMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +    A            V  +    + E  +   R+GA  +++KPF+ + L   ++  
Sbjct: 60  TMNGIDALKVMRARQPRTPVILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRA 119

Query: 118 PQMQKSKDENQFL 130
            Q+Q  K E + L
Sbjct: 120 LQLQAMKQEIRSL 132


>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 228

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A     A      E  P+ +V+D  M G+  F
Sbjct: 8   KILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIA-AEFQPHVIVLDVMMPGMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+   G +V +  L  + + E  + G   GA+ +++KPF+ E L   +    + 
Sbjct: 67  EVCRLLRKN--GENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRN 124

Query: 121 Q 121
           Q
Sbjct: 125 Q 125


>gi|237726077|ref|ZP_04556558.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. D4]
 gi|229435885|gb|EEO45962.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides dorei 5_1_36/D4]
          Length = 1357

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAENGEEGVDVAIS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+ P    + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
 gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
          Length = 240

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  +       + V  A +   A +   +   P+ +++D  +  + 
Sbjct: 1   MTRVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHP-PDLVILDLGLPDLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   T+  +  L    D    +    AGA+ ++ KPF  + L   MR   + 
Sbjct: 60  G-IEVIRGLRGWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALRR 118

Query: 121 QKSKDEN 127
                E 
Sbjct: 119 SSGGTEQ 125


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    GF V    +  +A    ++    + +++D  + G  
Sbjct: 1   MSRILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGA-DLVLLDLQLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R         V  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRARSS---APVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116

Query: 119 QMQKSKDEN 127
           + Q   +E 
Sbjct: 117 RRQGEPEEL 125


>gi|197121293|ref|YP_002133244.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171142|gb|ACG72115.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. K]
          Length = 466

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR   R +    G  V EAT    A E    +  P  ++ D  M  +   
Sbjct: 12  RVLVVDDDPGVRYTLREILASEGLEVEEATDGEAALEKLGAQPYP-LVLTDLRMPRLDGM 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +         V  +       + +   +AGA  +  KPF  E L   +R   +  +
Sbjct: 71  ALLRKITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVEAVR 130

Query: 123 SKDENQFLD 131
             DEN+ L 
Sbjct: 131 LADENERLA 139


>gi|153807551|ref|ZP_01960219.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185]
 gi|149129913|gb|EDM21125.1| hypothetical protein BACCAC_01831 [Bacteroides caccae ATCC 43185]
          Length = 1381

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++L+V+    +R   + LF +  + +  AT+  E  +   KE LP+ ++ D  M     
Sbjct: 1125 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDMAMKE-LPDLIICDVMMPIKDG 1182

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V++ P    +    L  +V+ + +I G   GA+ ++LKPF    L+  +  L  
Sbjct: 1183 FECCREVKECPETCSIPFIMLTAKVEDDDIIHGLELGADDYVLKPFTPGILKAKVSNLIN 1242

Query: 120  MQKSKDEN 127
             +++  + 
Sbjct: 1243 GRQTLKQM 1250


>gi|121997174|ref|YP_001001961.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
 gi|121588579|gb|ABM61159.1| response regulator receiver modulated diguanylate cyclase
           [Halorhodospira halophila SL1]
          Length = 308

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD      +   HL  D  + +  AT   +A E       P+ +++D  M      
Sbjct: 12  TILIVDDEPTNIQALAHLLKD-DYHIRVATGGAKALEIAAGTPQPDLILLDVVMPEPDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ V ++           G   GA  ++ KPF+    R  +R    +
Sbjct: 71  EICRRLKADRATQNIPVIFVTGRDSAADEEHGLELGAMDYITKPFSPRITRTRVRNHVDL 130

Query: 121 QKSKDENQFLD 131
           ++  D  + L 
Sbjct: 131 KRKTDALERLS 141


>gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 240

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +           G+ V  A+   EA+E C  E   + +V+D ++  +  F
Sbjct: 19  KLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENY-DLIVLDINLPKMDGF 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V V  L      +  + G   GAN +L+KPF+ + L   +R L + ++
Sbjct: 78  TVLQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRKQ 137

Query: 123 SKD 125
            ++
Sbjct: 138 VQE 140


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++         F V          E    E  P+ +++D  + G 
Sbjct: 1   MKQKILVVDDDSNICELLVVYLE-EDFQVKTVFDGNN-LEQVISEYRPDLILLDVMLPGK 58

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +    +R      ++ + +L  + +    + G   GA+ ++ KPF+   +   ++ +
Sbjct: 59  NGFDICREIR---DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAV 115

Query: 118 PQMQKSKDENQF 129
            +  +++   + 
Sbjct: 116 LRRVQNRSGKKR 127


>gi|322420796|ref|YP_004200019.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127183|gb|ADW14743.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 377

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +++VD +    ++      D  + +F ATS  +A E    +  P+ +++D  M G
Sbjct: 1   MKRQTVMIVDDTPANIEILSESLGD-DYELFFATSGADALELIRADK-PDLILLDIMMPG 58

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        ++  P   D+ + ++   ++ E+ I G   GA  +L KP +   +R  ++ 
Sbjct: 59  MDGYELCTILKGDPTTRDIPIIFVTAMIEEEQEIKGLELGAIDYLTKPISPHIVRARVKN 118

Query: 117 LPQMQKSKDENQFLDA 132
             ++++ +D  + L +
Sbjct: 119 HLELKRYRDLLETLAS 134


>gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    +R+  R L    G++V EA    +  +        + +++D  M 
Sbjct: 1   MKMDNHILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKV--SDDIDLVILDIMMP 58

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+        +R++   + V V +L  +      + G  AG + +L+KPF+   L   ++
Sbjct: 59  GISGIKTCEEIRKI---SHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVK 115

Query: 116 ELPQMQKSKDE 126
            L +      +
Sbjct: 116 ALLRRYHVYSQ 126


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    + +         G+ V  A    E  +   +E   + +++D  +    
Sbjct: 1   MKRILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDW-DVILLDLMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     +  V  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLEVCRRLRQE---KETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIF 116

Query: 119 QMQKSKD 125
           +  +  +
Sbjct: 117 RRMEYAE 123


>gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 235

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +  R      GF V    +  E  +    E  P+ +++D  +     
Sbjct: 11  RKILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAA-AEWGPDCVLLDLMLPDENG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L  +      + G  AGA+ ++ KPF+   L   +  + +
Sbjct: 70  YRVCETLRSRD--PVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFR 127

Query: 120 MQ 121
            Q
Sbjct: 128 RQ 129


>gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  + ++   + G+    A                + ++ D  +  + 
Sbjct: 16  MHTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHT-FDLVISDIILPKMD 74

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L      +  + G  AGA+ +++KPF+   L   +R L 
Sbjct: 75  GFELCKEIRK--TNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLL 132

Query: 119 QM 120
           + 
Sbjct: 133 KR 134


>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
 gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+   +A++  EA E  +   + + +++D  M  +   
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNV-HLIILDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++       + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120


>gi|153808459|ref|ZP_01961127.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185]
 gi|149128781|gb|EDM19998.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185]
          Length = 1339

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1075 RRILIVEDNDELRNYLLQTLSEE-YTVQTCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1132

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ ++LKPFN   L+  +  L  
Sbjct: 1133 DELCKELKNNIETSHIPVILLTALNNEKDILSGLKIGADEYILKPFNIGILKATVDNLLT 1192

Query: 120  MQKSKD 125
             +    
Sbjct: 1193 NRALLR 1198


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKTE 122


>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 242

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVE-EYNPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR 120


>gi|261408948|ref|YP_003245189.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261285411|gb|ACX67382.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1049

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            LL+VD   +  KV  HL  D G+ +   T   EA +  E+    + ++ D  M  +   
Sbjct: 720 RLLIVDDDPVNLKVIHHLLADEGYRIVTVTRAEEALQLLEQGEW-DLIISDVMMPQMSGY 778

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ  + +++ +  L      E +  G  +GAN +L+KP +   L+  +R L ++
Sbjct: 779 ELSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPVDHLELKTRVRALLEL 838

Query: 121 QKSKDENQFLDA 132
           ++S  E   ++A
Sbjct: 839 KRSIKERLHMEA 850


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    V    +    +  + V  A    E  +    E   + L++D  +  +   
Sbjct: 2   RILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAM-EKNFDLLILDWMLPKMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  L  +   E ++AG  +G++ +L KPF    L   +R L +  +
Sbjct: 61  SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 123 S 123
            
Sbjct: 121 Q 121


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K  D
Sbjct: 116 RRVKKTD 122


>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 233

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R+  +      GF + EA S  +  E  E    P+  V+D  + G+  F
Sbjct: 8   KVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNK-PDVAVLDIMLPGIDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      ++ +  L  +      I G   GA+ +L KPFN   L   ++ + +   
Sbjct: 67  EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 126

Query: 123 SKDENQFL 130
            K  N  +
Sbjct: 127 QKQNNSQI 134


>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
 gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +  F VF+  +  +A + C +   P+  ++D  M  +   
Sbjct: 4   KILIVDDEQEIADLVALYLQNENFTVFKHYNALDALD-CIRSETPDLAILDVMMPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++R+        V  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  ELCRNIREQYRY---PVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 293

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  + +A S  EA    +   + + +V+D  M G+  
Sbjct: 61  SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 119

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 120 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 176

Query: 120 MQKSKDE 126
                 E
Sbjct: 177 RTYQSKE 183


>gi|118594517|ref|ZP_01551864.1| osmolarity response regulator [Methylophilales bacterium HTCC2181]
 gi|118440295|gb|EAV46922.1| osmolarity response regulator [Methylophilales bacterium HTCC2181]
          Length = 238

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           + LVD    +R++     +D G  V  A++  E  +        N +V+D  M     LE
Sbjct: 10  IALVDDDPKIRELTAKYLSDQGLSVVTASNGAE-LDELRINYNINLIVLDLMMPEESGLE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R   +  D  +  L  + D    I G   GA+ +L KPFN   L   +  + + Q
Sbjct: 69  VCQRLRVNKI--DTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARINAIIRRQ 126


>gi|104779513|ref|YP_606011.1| osmolarity response regulator [Pseudomonas entomophila L48]
 gi|95108500|emb|CAK13194.1| two-component response regulator OpmR [Pseudomonas entomophila L48]
          Length = 246

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   GF V    +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLDRFFTSKGFRVRTVPNVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q
Sbjct: 71  SACKRLRASNNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELVARVKAVLRRQ 129


>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 225

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +  + GF  F      +A     +E+ P+ +++D  + G+
Sbjct: 1   MKPRILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAV-REVRPDLVLLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  NGIDVCRVLRSDSG---VPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRAR 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LRRTE 121


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +  + R      G+ V       +A    +  L P+ +++D  + G    
Sbjct: 8   KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKA-LSPDMVLLDIMLPGKDGW 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   ++V +  +  + +    + G   GA+ +++KPF+ + +   +  + + 
Sbjct: 67  QVCREIRKI---SNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRR 123


>gi|262403061|ref|ZP_06079621.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586]
 gi|262350560|gb|EEY99693.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586]
          Length = 368

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L     + +  A S  +A   C K+  P+ +++D  M  +   
Sbjct: 6   TILIVDDNPENRALLAGLLKPH-YRLLVAVSGAQALAICHKQK-PDLVLLDIMMPEMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   D+ V +L  +   E    G   GA  ++LKP +   L    R   ++
Sbjct: 64  EVCQRMRADPELQDIPVIFLTAKSQIEDEQHGFDVGAVDYILKPISPPILLARTRTHLRL 123

Query: 121 QK----SKDENQFLD 131
           Q       ++N+ L+
Sbjct: 124 QHTMKLLAEQNETLE 138


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        G+ V  A S   A + C     P+ L++D  M G+  F
Sbjct: 15  KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRT-FKPDALILDVMMPGMDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G +    +L      E  I G   G + ++ KPF+ E +   ++ L + 
Sbjct: 74  GLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRR 131


>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + ++  + +++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
 gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
 gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
 gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 241

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 2478

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  + G  V  A +   A E  E+    + +++D  M  +  
Sbjct: 2358 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2417

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +     +R+    + + +  +  +   +       AGA+ +L KP + + L   +R
Sbjct: 2418 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2473



 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LLL++      ++   +  + GF    AT           E  P+ + +D  +  V    
Sbjct: 2091 LLLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMA-NEFQPHAITLDIQLPVVDGWS 2149

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118
             +  +++ P    + V+ +           G   GA  +L KP ++E L     +L    
Sbjct: 2150 VLDRLKRNPRTRHIPVHVIS----VMDKNQGNSQGAFGYLTKPVSKEGLERVFNQLASFL 2205

Query: 119  QMQKSK 124
            + ++ +
Sbjct: 2206 ERKERR 2211



 Score = 66.4 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              LLLV+   + R     L ++ G   V    +  E     E     + +VID  +    
Sbjct: 2210 RRLLLVEDDDVQRDSLVKLLSEGGDVEVTAVATGEEVLHHLETGE-FDCVVIDLMLPDTD 2268

Query: 61   E--FIAHVRQMPLGTDVFVYYLLME 83
                +  V+      D+ +     +
Sbjct: 2269 GIRLVEEVKTQNRFRDLPIVIYTGK 2293


>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     +K     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +++ V  L  + D +  ++G R GA+ +L KPF+   L   +  L +
Sbjct: 61  DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +         + G+    A    E   F E  ++ + +++D  +  +   
Sbjct: 16  RILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAET-VVYDLIILDLMLPRLDGM 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      +  V  L         + G  AGA+ +L KPF    L   +R L + +
Sbjct: 75  EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRE 133


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 12/126 (9%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDESM 56
           +L+V+    + +    L    GF V  A     A +               + +++D  +
Sbjct: 9   VLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLML 68

Query: 57  EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            G+        +R     + V V  +         + G   GA+ ++ KP++   L   +
Sbjct: 69  PGMSGTEVCRQLRS---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARI 125

Query: 115 RELPQM 120
           R + + 
Sbjct: 126 RAVLRR 131


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + LV+    +  +  +     GF    +++  EA     KE  P+ +++D  +     +
Sbjct: 4   KVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEI-KEQEPDLVLLDWMLPDLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +++     D+ +  L  +   E  +A   AGA+ ++ KPF    L   +  L + 
Sbjct: 63  DICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRR 122

Query: 121 QKSK 124
            K +
Sbjct: 123 SKPR 126


>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 266

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    V    +    + GF V  A      +         + +++D ++    
Sbjct: 39  MQRILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNY-DLVILDLNLPHAN 97

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+      + +  L      +  +     GA+ +L+KPF+   L   +R   
Sbjct: 98  GYEVCEVIRR--KNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFL 155

Query: 119 QMQKSKDEN 127
           +   S+ + 
Sbjct: 156 KRAGSEVQE 164


>gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 223

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA E  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 1415

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL D +H +R     L  D  + V        A E  +K   P+ ++ D  M     L 
Sbjct: 645 ILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKK-RRPDLVLSDVMMPRLDGLG 702

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-----E 116
            +  +R  P   D+ V +L      E  + G  AGA+ +L KPF+   L   +R      
Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTA 762

Query: 117 LPQMQKSKDE 126
             +    + E
Sbjct: 763 AIRRTALRTE 772



 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 11/119 (9%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62
            +L+V+ +  V +    L +D G+    A+S  +A           + ++ D +M G+   
Sbjct: 1300 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 1359

Query: 63   I--AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +++     ++ V               G        L KP++ E L   +R+  
Sbjct: 1360 TLGREIKKR--LPELPVVLNSGYAHMLADEDHGFEL-----LHKPYSVEDLSKVLRKAM 1411


>gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 347

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +              G++V  A S  +A +   + + P+ +++D  M  +  F 
Sbjct: 37  ILIVDDTPENLAFLSDTLQARGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 95

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q      + V ++    + E ++ G R G   ++ KP   E L   +    +  
Sbjct: 96  TCVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRRS 155

Query: 122 KSK 124
           +++
Sbjct: 156 RAQ 158


>gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +R +   L    GF V  A +  E  +      + + +++D  + G   L+
Sbjct: 27  ILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPV-DLVLLDVMLPGQSGLD 85

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V +  +    +    + G   GA+ +L KPF+R  L   +R + +  
Sbjct: 86  LCRTIRARSE---VPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRRA 142

Query: 122 KS 123
           ++
Sbjct: 143 QA 144


>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 234

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL D    +  V R      G+ V  AT   +A +    E  P+ +V+D  M    
Sbjct: 1   MYTILLADDEESILDVCRRYLELEGYRVITATDGQDALKLV-NEYSPHLIVLDIMMPIQD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR   +  D  +  L         I G   GA+ +L+KPF+ + L   +  + 
Sbjct: 60  GWHVAEQVR---VSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|145641399|ref|ZP_01796978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae R3021]
 gi|145273942|gb|EDK13809.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.4-21]
          Length = 164

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +R++     +   + V EA+    A    ++   P  +++D  + G   
Sbjct: 3   RKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN--PKLILLDWMLPGRSG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++FI ++++      + +  L  +   E  IA   AGA+ ++ KPF+ + L   +  + +
Sbjct: 61  IQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWR 120

Query: 120 MQKSKDEN 127
               +   
Sbjct: 121 RIYEQQSQ 128


>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
 gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
          Length = 226

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+ +  V  +    F+  G     A    E  E  ++    + L++D  + G+   
Sbjct: 2   RILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGH-DLLILDWMLPGMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G+ V +  L  +      + G   GA+ ++ KPF+  TL   ++ + +  +
Sbjct: 61  ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120


>gi|315225247|ref|ZP_07867064.1| two component system sensor histidine kinase regulator
            [Capnocytophaga ochracea F0287]
 gi|314944930|gb|EFS96962.1| two component system sensor histidine kinase regulator
            [Capnocytophaga ochracea F0287]
          Length = 1348

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+V+ +  +R   +H+ N+  F V  A    E  E      +P+ +V D  M     +
Sbjct: 1096 TILVVEDNDDMRDYIQHILNEH-FHVLLARDGEEGLELAITH-IPDLIVSDIMMPKRDGI 1153

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQ 119
              +  +R       + +  L       +++ G   G   ++ KPF+ + L   +   L  
Sbjct: 1154 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1213

Query: 120  MQKSKDE 126
             +K  ++
Sbjct: 1214 RKKLWEQ 1220


>gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 223

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+V +      G  V EA    EA E C KE   + +V+D  M  + 
Sbjct: 1   MFKILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKC-KEQEFDVIVMDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F ++ +++    D+ V  L    +    + G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GFSSY-KEIKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKR 118

Query: 121 QKSKDENQFLD 131
           ++   EN  L+
Sbjct: 119 RQRIIENAVLE 129


>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +  + E+  + +++D  M  +  F
Sbjct: 4   NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
 gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
          Length = 232

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    + +    +     + V       EA ++ E     + +++D  M  +   
Sbjct: 6   RLLLAEDEEDLSRALVMVLKHNNYSVDAVYDGAEALDYLENGGNYDGVILDIMMPKMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    G  V V  L  + + +  + G  +GA+ +L KPF+ + L   +R + + Q
Sbjct: 66  TVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMTRRQ 124


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A++   A +   +E+ P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKA-REVRPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + + 
Sbjct: 73  GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130


>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 230

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D +  +  + +      GFM   A    EA +   K   P  L++D  M     
Sbjct: 3   KYILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSK-YHPLLLLLDVMMPKKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    ++V +  +  + +    I G   GA+ +++KPF+   +   +R + +
Sbjct: 62  FEVCREIRQK---SNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILR 118

Query: 120 MQKSKDEN 127
              + +E+
Sbjct: 119 RVDNSNED 126


>gi|218439786|ref|YP_002378115.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7424]
 gi|218172514|gb|ACK71247.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7424]
          Length = 308

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     R + +    + G+ V  A    E      +   P+ +++D  M  +  F 
Sbjct: 15  ILVVDDDRSTRTLLKVAMEEEGYQVITAKDGEECINEFNR-CQPHMILLDAVMPEMDGFT 73

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++  G+ + +  +    D + +      GA  ++ KP +   L   ++ L    
Sbjct: 74  CCQRLRELSEGSQIPILMITALDDQDSIDQAFTCGAVDYITKPIHWAVLAQRVKRLLTTS 133

Query: 122 KSKDENQFLD 131
           K+  E + + 
Sbjct: 134 KALVELEQVQ 143


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    E+    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRSRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +R+         G  V  A +  E          P  +++D  + G+ 
Sbjct: 1   MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALI-GGFRPELVLLDLMLPGIN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D   ++ G  AGA+ +++KP   E +   ++ + 
Sbjct: 60  GVQVCRRIRE---TSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRLK 120


>gi|307152868|ref|YP_003888252.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306983096|gb|ADN14977.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 125

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+VD S  +R++   L    G  V EA S  EA+E  +KE +P+ ++ D  M  + 
Sbjct: 1   MITVLIVDDSPSLRQILIELLQKRGINVLEAASGMEAQEQIQKE-VPDLVITDLIMPQMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   DV V     + +      G + GA++++ KPF    +   ++ L 
Sbjct: 60  GYELCRWIKNNPSTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFQPAEMLQTIKFLL 119

Query: 119 QMQK 122
           Q ++
Sbjct: 120 QNRR 123


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKTE 122


>gi|16330585|ref|NP_441313.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653076|dbj|BAA17993.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 366

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD S     +   L  D  + +  A+   +A         P+ +++D  M      
Sbjct: 12  TVLIVDDSPDTLTMLSGLLKDH-YRIKIASKGEQALAIAASMPPPDLILLDIMMPEIDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      ++ V +L  + D      G   GA  ++ KP +   L   +R    +
Sbjct: 71  EVCTKLKADTQTKNIPVIFLTAKTDVADEQHGFSLGAVDYITKPISPPILLARVRTHLNL 130

Query: 121 QKSKDENQFL 130
           + + D    L
Sbjct: 131 KAAYDRLTRL 140


>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R      GF V    +  E  +   ++   + L++D  + G+ 
Sbjct: 1   MRKILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRI-RDGEYDLLILDIMLPGMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++++    D+ V  +  + +    I G + GA+ ++ KPF+   L   +      
Sbjct: 60  GY-EILKKIRDEKDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAK 118

Query: 121 QKSKD 125
            +   
Sbjct: 119 YERLR 123


>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +      +    G+ V  A +     EF  +    + L++D  + G  
Sbjct: 1   MK-ILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNY-DLLILDWMLPGKT 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 59  GLAICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +        +  G+ V +A    +A     +    + L++D  +     L
Sbjct: 2   RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQA-GTLAQNHHYDLLILDWMLPHQSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R         + +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D +  + KV     +  G+    AT   EA +  + E+ P+ +++D  M  + 
Sbjct: 1   MQNILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFD-EVSPSAVLLDVMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +    +  + I G   GA+ +++KPF+   +   +R + 
Sbjct: 60  GYEVCRKIRAK---SNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA E  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+ V +A +  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + + V  L  + D    I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 AE 120


>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 252

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54
            +L+V+   ++R +      D G+ +    +   A    ++E           + L++D 
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79

Query: 55  SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            +     L+    +R    G  + +  L  +      + G   GA+ +L KPF+   L  
Sbjct: 80  MLPQVNGLDICRLLR--YQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137

Query: 113 AMRELPQMQKS 123
             R L + Q  
Sbjct: 138 RCRALIRRQNL 148


>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD    +R + R      G+   EA ++  A      +  P+ +++D  + G   +
Sbjct: 5   KVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIV-DDRPDIVLLDWMLPGGSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +++  +  D+ V  L  +     +I G   GA+ ++ KPF    L   ++ L + 
Sbjct: 64  ELLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRR 123

Query: 121 QKSKDENQFL 130
            KS D+   L
Sbjct: 124 AKSSDDRNLL 133


>gi|299144931|ref|ZP_07037999.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515422|gb|EFI39303.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1372

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1113 LLIVEDNEEIQKYISESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + +  L  +   +    G   GA+S+L KPF+   LR  +  L +  
Sbjct: 1171 LCRQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1231 KKLIAQ 1236


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+V+    + K  ++  N   + V  A    +A E   KE  P+ +++D  +     
Sbjct: 3   NKVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEK-PDLILLDIMLPKLSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+        +  L  + D    I G   GA+ ++ KPF+   L   +R + +
Sbjct: 62  FEVCRILRKEMNS---PILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLR 118

Query: 120 MQKSKD 125
             +  +
Sbjct: 119 RTQIME 124


>gi|258591620|emb|CBE67921.1| putative Nitrogen assimilation transcription regulatory protein
           (ntrC)(synonyms:glnT, glnG) [NC10 bacterium 'Dutch
           sediment']
          Length = 487

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 50/132 (37%), Gaps = 1/132 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R   R      G+ V  A    E       +   + +++D  M G   
Sbjct: 5   RHILVVDDEESIRWALRKALEREGYQVVLAADGVEGLARA-TDPSIDLVLMDIKMPGAEG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R      ++ V  +      +  +   + GA  ++ KPF+   L   ++ + +++
Sbjct: 64  LETLSRIKETRPELPVIIMTAFGTLQAAVQAMKRGAYDYITKPFDFGELTILVQRVFEIR 123

Query: 122 KSKDENQFLDAI 133
           +  +    ++A+
Sbjct: 124 ELTERVAQMEAL 135


>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
 gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
          Length = 238

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      +  FMV    +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQ-MDRFLERENYHLMVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q
Sbjct: 66  SICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQ 124


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++  +   + G+ V  A +  +A +  ++E  P  +++D  + G+   
Sbjct: 5   KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEEN-PRLMLLDLMIPGLDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ V  L  + +    I G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRR 123

Query: 121 QKS 123
            KS
Sbjct: 124 TKS 126


>gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +        G    EA     A         PN +V+D +M  +   
Sbjct: 7   TVLVVDDDPHIRDLLTFALQKAGLATREAADGEAALADI-ALYRPNLVVLDINMPRMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ V +L    D    I G   GA+ ++ KPF+   +   +  + + 
Sbjct: 66  EACRRIRAQG---DLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAILRR 122


>gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 524

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            SLL+VD +    +    +    G+ V +A S   A E       P+ + +D  M  +  
Sbjct: 6   TSLLIVDDNIDNLRSLAAILRLEGYKVRKAISGQVALETVRSHP-PDLIFLDIKMPQMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + ++Q      + + +L    +    +     G   ++ KPF    +   +    +
Sbjct: 65  YTVCSILKQDTTTGSIPIIFLSALNETADKLKAFAVGGVDYITKPFQAPEVVARVENQLR 124

Query: 120 MQKSKDEN 127
           +Q+   + 
Sbjct: 125 LQRLSQQL 132


>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           LLLVD    +R+       + G F V  A++  +A +   ++  P+ ++ D  M      
Sbjct: 5   LLLVDDEPGIRESVPAYLEEVGGFTVDVASNANDAWQML-QQKTPDLVITDIMMPQVDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R+ P    + V +L         I G +AG +++L KPF+ + L   +  L + 
Sbjct: 64  QFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKPFDTDELVAIVENLLER 123

Query: 121 QKSKDEN 127
           + +  + 
Sbjct: 124 RATTAQE 130


>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA +  +A E   +    + +++D  + G   +
Sbjct: 8   KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDY-DVILLDLMLPGRDGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        +  L  + +    + G   G + +++KPF+   +   ++ L + 
Sbjct: 67  EVCKGIREK---KATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 123


>gi|158522817|ref|YP_001530687.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Desulfococcus oleovorans Hxd3]
 gi|158511643|gb|ABW68610.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfococcus oleovorans Hxd3]
          Length = 466

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 4/135 (2%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD     R + R L   +G    EA     A E+ +     + +++D  M 
Sbjct: 9   MKKHATILIVDDDAGHRSMLRTLLEGWGHQTAEADDGLAAVEYVQTRPA-DIVLMDLKMV 67

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +    A  +       V V  +      +  +   + GA  +L KP + E LR  +  +
Sbjct: 68  HMSGMEALEQIRSFNPGVPVIIMTAFSSVDTAVEALKKGAYDYLTKPLDFEKLRLTLERI 127

Query: 118 PQMQKSKDENQFLDA 132
            +  + + EN+ L  
Sbjct: 128 LEAARLRKENRHLKE 142


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    VR+  R      G+ V  AT   EA      E  P+  ++D  M     L
Sbjct: 2   KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEAL-KLIAEERPDLAILDVMMPKKDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G D+ +  L      E+ +AG  AGA+ +L KPF  E L    R L + 
Sbjct: 61  DVCRELRSH--GDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+ V  A +   A     +E+ P+ +V+D  +      
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L  +   E  +AG  AG + ++ KPF+ E +   +R L +   
Sbjct: 77  EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 123 SKDENQ 128
           + +E Q
Sbjct: 137 ASEEKQ 142


>gi|193214111|ref|YP_001995310.1| response regulator receiver protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193087588|gb|ACF12863.1| response regulator receiver protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 125

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + K+   +     + V       EA  + ++  +P+ +++D +M  V  
Sbjct: 3   KTILVVDDEVAMLKILSFILTKS-YDVVTKKDGDEALFWLQQGNIPDLVIVDINMPNVDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI +VR      D+ +  L      E  I     GA+ F++KPFN E L+  +  + +
Sbjct: 62  YSFIKNVRVSGFFKDIPIVVLSANDKSEDRIKCLNIGADDFIVKPFNPEELKARISSIFR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|170078157|ref|YP_001734795.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885826|gb|ACA99539.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 379

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+++    V  + R +    GF V  AT      E    + LP+ ++ D ++    
Sbjct: 1   MATILVIEDELNVLSILRDILTAEGFAVITATDGQIGLETAYAQ-LPDLIICDVNLPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +      T +   +L           G   GA+ ++ KPF R+ L  A+R   
Sbjct: 60  GYGVLKALHSNSTTTTIPFIFLSARASRSAQRQGMDLGADDYIPKPFTRQELLNAIRGRL 119

Query: 119 QMQKSKDEN--QFLDAI 133
             ++   ++  Q L+ +
Sbjct: 120 SRRQGLAQHSAQQLEQL 136


>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
 gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ V +A    EA +  ++E   + LVID  M  + 
Sbjct: 1   MFNILVCDDDKEIVEAIEIYLRQEGYNVLKAYDGEEALKVLKREEKVDLLVIDVMMPRLD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 61  GIRATLKIREENS-LPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 119


>gi|241763069|ref|ZP_04761130.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241367852|gb|EER62084.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 251

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G+ V EA ++ E          P+ LV+D  +    
Sbjct: 20  MRTVLVVEDEPQIRRFVRSALEAEGWQVHEAATMREGLSAAGT-RQPDLLVLDLGLPDGD 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   + V +  L    D    +    AGA+ +L KPF    L   +R   + 
Sbjct: 79  GV-DLICDVRGWSAVPIIVLSARTDEADKVRALDAGADDYLTKPFGTGELMARVRANLRR 137

Query: 121 QKSKDEN 127
            ++   N
Sbjct: 138 PRAARGN 144


>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
 gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
          Length = 238

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 4   NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|160942867|ref|ZP_02090106.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445768|gb|EDP22771.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103953|emb|CBL01497.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R +        G  V EA S   A     ++   +  ++D  + G+ 
Sbjct: 1   MVRVLVVEDEANIRDMIALNLRHAGMEVVEAESAEAALPLLAQKPGCDAAILDVMLPGMN 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L  +   +  I G   GA+ ++ KPF+   L   +  L 
Sbjct: 61  GFSLCETIRRTD--QQIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALC 118

Query: 119 QM-QKSKDEN 127
           +   ++K+E+
Sbjct: 119 RRVIRTKEED 128


>gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
 gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLSRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     + + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRNANSVLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|331085462|ref|ZP_08334547.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407700|gb|EGG87198.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 145

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +++V+    +R+         G+ VF+A +  E     E+E   +  ++D  M G+
Sbjct: 1   MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREK-IDLAIVDIMMPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +  V  L  + +    + G   GA+ ++ KPF    L   +    +
Sbjct: 60  DGITMTMRLREKY-EFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLR 118

Query: 120 MQKSKDE 126
                 E
Sbjct: 119 RYNRFQE 125


>gi|313158368|gb|EFR57767.1| putative sensory transduction protein RegX3 [Alistipes sp. HGB5]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A S  +A          + +++D  M  +  F
Sbjct: 5   KILVVDDEESLCEILQFNLEVEGYEVDTAYSAEQALGM--HPERYSLILLDVMMGEMSGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P    V + +   +   +  +AG   GA+ ++ KPF+   +   +R + + 
Sbjct: 63  KMARQLRAQPETAAVPIIFCTAKDTEDDTVAGLNIGADDYIAKPFSVREVLARVRSVLRR 122

Query: 121 QKSKDENQF 129
              ++    
Sbjct: 123 TAPQEGQSR 131


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + ++        GF VF A    E     +     + +++D  +  +
Sbjct: 1   MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSY-DIILLDVMLPKM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R+    + V +  L  + +    + G   GA+ ++ KPF+ E L   ++ L
Sbjct: 60  SGMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKAL 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LRRTK 121


>gi|119513685|ref|ZP_01632685.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119461659|gb|EAW42696.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 366

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD S     + + +    G+++  A +  +A    EK    + +++D  M G+   
Sbjct: 10  KILVVDDSPDNVFLIKTILQGEGYIISTAENGADALVELEKSPC-DLVLLDLMMPGMDGY 68

Query: 62  -FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R        + +  +        +  G   GA+ F+ KP   + L   +R L +
Sbjct: 69  EVTRRIRGDTKFQPYIPILLITAHDAP-NVAKGLDLGADDFIRKPVTLDELLARVRSLLR 127

Query: 120 MQKSKDENQFLD 131
           +++S DE   + 
Sbjct: 128 LKRSIDERDEIA 139


>gi|86741974|ref|YP_482374.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86568836|gb|ABD12645.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 272

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL V+    + +  R      GF V  A     A         P+ +++D  +  + 
Sbjct: 23  MTRLLFVEDEPQLLRAMRITLRARGFEVRTALDGRHALSEA-ASCPPDLVILDLGLPDMD 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +   T V +  L         +A   AGA+ ++ KPF+ + L   +R + + 
Sbjct: 82  GV-EVIQGLRAWTGVPIIVLSGRASGHDKVAALDAGADDYVTKPFSIDELLARVRAVTRR 140

Query: 121 QKSKD 125
             S +
Sbjct: 141 ATSAE 145


>gi|317475905|ref|ZP_07935161.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316907938|gb|EFV29636.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1362

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 1    MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
            M       +L+V+    ++   +   +D  + V   ++  EA +   ++  P+ ++ D  
Sbjct: 1104 MKSKTRLRVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDT-PDLVISDVM 1161

Query: 56   MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            M  +        ++Q      V V  L  +   E  + G   GA+++++KPFN E L+  
Sbjct: 1162 MPEMDGLTLCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKT 1221

Query: 114  MRELPQMQKSKD 125
            +  L   ++   
Sbjct: 1222 IANLINNRRLLR 1233


>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
 gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
          Length = 230

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD    +     +     GF V  A +  E      ++   +  ++D  + G+   
Sbjct: 7   SILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDY-DLFILDIMLPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V +L         + G   G + +L KPF    L   +R L + 
Sbjct: 66  ELCRRLRARTAS---PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122

Query: 121 QKSKD 125
            + +D
Sbjct: 123 GRLED 127


>gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22]
 gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    V +V     +  G+ V  A               P+ +V+D  + G+     
Sbjct: 2   LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPA-ALARAAAHRPDLVVLDLMLPGMDGLEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R    G  V V  L    D +  I G   GA+ ++ KPF+   L   +  + +  +  
Sbjct: 61  CRRLRARGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPA 119

Query: 125 DENQFLDA 132
            + + L A
Sbjct: 120 SDARQLTA 127


>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
 gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 241

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R   +G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 254

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF ++EA    +A +    E+  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKM-NEVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+V+    +R + R       F VFEA++  E       +   + +++D  M  +  
Sbjct: 3   KSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQK-IDLVLLDIMMPVMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +   + + V V  L  + + E  + G   GA+ ++ KPF+ + L   ++ L +  
Sbjct: 62  LTMLEKLREV-STVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRT 120

Query: 122 K 122
           +
Sbjct: 121 R 121


>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
 gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+VD    +  +      D GF +       EA E  E+    + +++D  M  + 
Sbjct: 1   MDRILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         + ++  +      + G   GA+ ++ KPF  E L   ++   + 
Sbjct: 61  GLELCRRVRDQLKA-PIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRR 119

Query: 121 QKSKDEN 127
           +K    N
Sbjct: 120 EKRHQMN 126


>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R       F V   T   E      KE   + L++D  +  + 
Sbjct: 2   MKKILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNF-KENKFDLLILDIMLPQID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + +  +    D+ V  +  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 61  GF-SILHSIQEEKDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKN 119

Query: 121 QK 122
            +
Sbjct: 120 YE 121


>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R   R      G  V EA    EA   C +E   + +++D  M  + 
Sbjct: 1   MSKILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTIC-REQDFDAIIMDVMMPKLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  L    +    + G   G + +++KPF+ + +   +R + 
Sbjct: 60  GFSACKEIRK---TKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVII 116

Query: 119 QMQKSKDEN 127
              +   +N
Sbjct: 117 SRNRQHLQN 125


>gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 243

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L VD   +  K+   L  + G  V  A    +A    E +  P+ +++D  +  +  F 
Sbjct: 8   ILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALE-QRTPDLILLDVQLPRMDGFT 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                     ++ V  L    + +  + G  +GA+ +++KPF    L   ++ + +    
Sbjct: 67  LLKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRA-- 124

Query: 124 KDENQFLDA 132
              N+ L A
Sbjct: 125 ---NRQLAA 130


>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R + R  F   GF V EA+   EA      E + +  ++D  M  +  
Sbjct: 3   KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIF-SENIVDLAILDIMMPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++R++   ++  +  L  +   E  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  LAVCRNIREV---SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLR 118

Query: 120 MQKSKDENQFLD 131
              + ++   LD
Sbjct: 119 RTGTLNDKNILD 130


>gi|78777953|ref|YP_394268.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498493|gb|ABB45033.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++       FGF V       +A    + E   + +++D ++ G+ 
Sbjct: 1   MKKILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEP-FDLVILDLTLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +       D    +     GA+ ++ KP++   L   +  + 
Sbjct: 60  GLEVCEAIRER---QDIPIIISSARSDVTDKVKALELGADDYIPKPYDPRELEARIHSVL 116

Query: 119 QMQKSKDENQ 128
           +  ++K + +
Sbjct: 117 RRYEAKSQQK 126


>gi|149189914|ref|ZP_01868193.1| response regulator/phosphatase [Vibrio shilonii AK1]
 gi|148836229|gb|EDL53187.1| response regulator/phosphatase [Vibrio shilonii AK1]
          Length = 365

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     V   +  D  + V  A S   A +  +K   P+ +++D  M  +   
Sbjct: 32  TVLVVDDTPENLDVLNGILTDS-YKVKVAISGRIALKIAQKVPRPDIVLLDVMMPEMDGY 90

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL +D+ V ++  + +      G   GA  +++KP +   +R  +     +
Sbjct: 91  QVCEQLKANPLTSDIPVIFVTAKGEVSDETKGFELGAVDYIIKPVSPPIVRARVATHLSL 150

Query: 121 QKSKDENQFL 130
              K + + L
Sbjct: 151 HHQKRQLEKL 160


>gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395]
 gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
 gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae]
 gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|332705121|ref|ZP_08425203.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332356071|gb|EGJ35529.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 276

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V     ++ GF V   T    A E       P+ +++D  M G+  F 
Sbjct: 10  ILVVDDTPTNLSVISQALHNAGFTVAVETDGESAIEQVNYN-QPDLILLDVMMPGIDGFE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ V ++    D    + G   GA  ++ KPF ++ +   +R   Q++
Sbjct: 69  TCKRLKANPSNRDIPVIFMTALTDTVDQVKGLSIGAVDYITKPFQQDEVLARVRIHLQLR 128

Query: 122 KSK----DENQFLD 131
                  ++N  L 
Sbjct: 129 HLTITLDEQNARLK 142


>gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 281

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLLV+    V +V R+   + GF+V E     +A E    EL+P+ +++D  + G+  
Sbjct: 54  RRLLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESV-AELVPDLVILDRKLPGIDG 112

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     T V V  L      E  I G  +GA+ +L KPF+   L   ++ + +
Sbjct: 113 TEVCRRLRS---FTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILK 169

Query: 120 M 120
            
Sbjct: 170 R 170


>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 261

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF          A     +EL P+ +++D  + G+
Sbjct: 37  MKARVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPAL-RELKPDLVLLDLMLPGM 95

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 96  NGIDVCKAIRSESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRAR 152

Query: 118 PQMQKSK 124
            +  +++
Sbjct: 153 MRRTEAE 159


>gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQ-MDRLLERENFHLMVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     D+ +  L  + D    I G   GA+ +L KPFN   L    + + + 
Sbjct: 66  SICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123

Query: 121 QKSKD 125
           + S+ 
Sbjct: 124 RSSEA 128


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF    A     A E    +   + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKF-ADNDIDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRA---TSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQKSKDEN 127
           +    +  N
Sbjct: 117 RRGNDQASN 125


>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1046

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L VD   +  +V   L    G  V       EA +        + ++ D  M  +  +
Sbjct: 714 RVLAVDDDGVNLRVLEELLYATGCSVVAVDHAEEALQLLNGRARFDLVITDWMMPEMSGI 773

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +++ V  L        + AG  AGAN FL KP + E L+  +R L  M
Sbjct: 774 ELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLRKPVDAEELKARVRTLLNM 833

Query: 121 QKSKDENQFLD 131
           + S +E    +
Sbjct: 834 RNSAEEAVRSE 844


>gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
 gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
          Length = 245

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 44/127 (34%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE-FCEKELLPNYLVIDESMEGVL 60
            ++LL++    + ++         + V  A +  E  E         + +++D  +  + 
Sbjct: 9   KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68

Query: 61  E--FIAHVRQM--PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +RQ          +  L  + D    + G   GA+ ++ KPF    L   +R 
Sbjct: 69  GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128

Query: 117 LPQMQKS 123
           + +    
Sbjct: 129 VMRRHDL 135


>gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234]
 gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 455

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A+    A   CE   + + +++D  M  +  F
Sbjct: 4   RILVVDDVPANLKLLEARLVAEYFDVLTASDGRSALAVCENTPV-DLVLLDIMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     T + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKANNRTTHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KNVSDELRLRA 133



 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
           ++LLVD     ++            V   +    A      E   + ++++ + +     
Sbjct: 155 NVLLVDGRASSQERLLRALKPI-AEVAVISDPQAALFEA-AENSFDLVIVNANFDDYDPL 212

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     + +  +  +   E ++     G   ++++P +   L        + 
Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGSEEMIVRALELGVTDYIMRPVDPNELVARSLTQIRR 272

Query: 121 QKSKDENQ 128
           +   D+ +
Sbjct: 273 KHCNDQLR 280


>gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
 gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
          Length = 1318

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +KE +P+ ++ D  M
Sbjct: 1045 KRIEGAKMLIVEDNESIKQMLAGIFETF-YQVSTASDGEEALEMIQKE-MPSIILSDVVM 1102

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1103 PRMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1162

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1163 NNLVNSRRLLQE 1174


>gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 265

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V +A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKG-QALALQYAPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    + + +  +      +  + G  +GA+ ++ KPF+ E L+  ++ L +  
Sbjct: 64  LCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRT 123

Query: 122 K-----SKDENQFLD 131
                 S ++ + LD
Sbjct: 124 NRAPLGSNNQQEILD 138


>gi|20808142|ref|NP_623313.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516731|gb|AAM24917.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 334

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     R++ R +    G+ + EA    EA     KE+LP+ +++D  + G+  F 
Sbjct: 30  ILIVDDDRFTRRILRDILEKEGYSIIEARDGEEAF-RLYKEMLPDMVILDVVLPGMSGFD 88

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R+      + +  L  + DFE+ I G   GA+ +L+KP N + L   +  L Q  
Sbjct: 89  LLKILRKEEENLMLPILVLTAKGDFEEKIKGLELGADDYLVKPVNEKELVIKVNNLFQRI 148

Query: 122 K 122
           +
Sbjct: 149 E 149


>gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R + R      G+ + EA    EA E C KE   + +++D  M  + 
Sbjct: 1   MERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKED-FDLIILDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ V  L    +    I G   G + +++KPF+   L   ++ + 
Sbjct: 60  GFSTCREIRK---FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVI 116

Query: 119 QMQKSKD 125
                KD
Sbjct: 117 SRNNKKD 123


>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    VR+  R      G+ +  A    EA    + E  P+ +++D  M     L
Sbjct: 2   KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSE-RPDMVILDVMMPKLDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G D  +  L       + +AG  AGA+ +L KPF  E L    R L + 
Sbjct: 61  EVCRELRSQ--GEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRR 118


>gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system,
           sigma54 dependent transcriptional regulator [NC10
           bacterium 'Dutch sediment']
          Length = 460

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+VD    +R+    L    G+ V  A+    A E       P+ ++ D  M  + 
Sbjct: 1   METILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELI-AHQSPDLVISDVRMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      + V  +      +  I   R GA+ ++ KPF  + +R  + +  
Sbjct: 60  GIGLLTGIRKTD--PHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEIRLVVEKAL 117

Query: 119 QMQK 122
              +
Sbjct: 118 AKVR 121


>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 13  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+VD + ++R+       + G+ V  A    +A +        + +V+D  +     
Sbjct: 8   QTVLVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPHLNG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R+   G  V +  L  +      + G   GA+ +L KPF    L    R + +
Sbjct: 68  LDLCRLLRR--EGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLR 125

Query: 120 MQ 121
             
Sbjct: 126 RH 127


>gi|298383908|ref|ZP_06993469.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298263512|gb|EFI06375.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1385

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++L+V+    +R   + LF +  + +  AT+  E  +   KE +P+ ++ D  M     
Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKE-MPDLIICDVMMPVKDG 1187

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V++ P    +    L  +V+ + +I G + GA+ ++LKPF    L+  +  L  
Sbjct: 1188 FECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLIN 1247

Query: 120  MQKSKDEN 127
             +++  + 
Sbjct: 1248 GRQTLKQM 1255


>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 246

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +         + G+    A     A +  +K L P+ +++D  +  +  
Sbjct: 19  RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADK-LHPDLIIMDLMLPVMDG 77

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R       + V  L    D   ++ G   GA+ ++ KPF+   L   +R L + 
Sbjct: 78  IEATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 135


>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2476

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  + G  V  A +   A E  E+    + +++D  M  +  
Sbjct: 2356 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2415

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +     +R+    + + +  +  +   +       AGA+ +L KP + + L   +R
Sbjct: 2416 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2471



 Score = 81.0 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LLL++      ++   +  + GF    AT           E  P+ + +D  +  V    
Sbjct: 2089 LLLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMA-NEFQPHAITLDIQLPVVDGWS 2147

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118
             +  +++ P    + V+ +           G   GA  +L KP ++E L     +L    
Sbjct: 2148 VLDRLKRSPRTRHIPVHVIS----VMDKHQGNSQGAFGYLTKPVSKEGLERVFNQLASFL 2203

Query: 119  QMQKSK 124
            + ++ +
Sbjct: 2204 ERKERR 2209



 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEA-TSVCEAREFCEKELLPNYLVIDESMEGVL 60
              LLLV+   + R     L ++ G +V  A  +  E  +  E     + +VID  +    
Sbjct: 2208 RRLLLVEDDDVQRDSLVKLLSEGGDVVVTAVATGEEVLQSLETGE-FDCVVIDLMLPDTD 2266

Query: 61   E--FIAHVRQMPLGTDVFVYYLLME 83
                +  V+      D+ +     +
Sbjct: 2267 GIRLVEEVKTQNRFRDLPIVIYTGK 2291


>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +  + GF         +A +   +   P+ +++D  + G 
Sbjct: 1   MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIF-RSSRPDLVLLDLMLPGV 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    VR     +DV +  L  + D   ++ G  +GA+ ++ KPF    L   +R  
Sbjct: 60  DGIEVCRQVRAE---SDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRAR 116

Query: 118 PQ 119
            +
Sbjct: 117 LR 118


>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
          Length = 265

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   LLL++    + ++ +      G++V  AT+  E     +++   + +++D  +  +
Sbjct: 34  MKVKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQP-FDLVLVDWMLPEM 92

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                  ++R     +DV +  +    +    + G + GA+ ++ KPF+ E L+  +   
Sbjct: 93  DGLTVCQNIRWE---SDVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASH 148

Query: 118 PQMQKSKDENQFLDA 132
            +  +  ++ + ++ 
Sbjct: 149 LRRWRRYNKQEEVEE 163


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + ++        GF V  A S   A     KE  P+ +V+D  +  +  F
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAA-KEHRPDLVVLDIMLPDLDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    GT   V +L      +  I G   G + ++ KPF+ E L   +R + +   
Sbjct: 68  EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRST 127

Query: 123 SKDE 126
           S ++
Sbjct: 128 SGEQ 131


>gi|320160069|ref|YP_004173293.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
 gi|319993922|dbj|BAJ62693.1| putative two-component response regulator receiver protein
           [Anaerolinea thermophila UNI-1]
          Length = 300

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+V+    +  + +  F+  G+ V  A    +A E   ++ +P+ +V+D  +      
Sbjct: 5   RLLIVEDDVDISNMLKIYFSSQGYDVETALRGSDALEK-TRQNMPHLIVLDIMLPDINGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     + + V +L  + +    + G   GA+ ++ KPF+ + LR  ++     
Sbjct: 64  EVCRQLRTTTRTSHIPVIFLTQKDERSDRLQGLELGADDYITKPFDIDELRLRVQNAISR 123

Query: 121 QKSKD 125
            + + 
Sbjct: 124 SERES 128


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+      +   ++    G+  F A +  E  +  E+    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGA-DLVLLDVMLPGMS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V +  L  +      + G   GA+ ++ KP++   L   ++ + 
Sbjct: 60  GVDVCRELRSRSS---VPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVL 116

Query: 119 QMQKSKDENQ 128
           + +   +  +
Sbjct: 117 RRRGEAEAGE 126


>gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 237

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+++    +R+  R L     + V EA +  +  E    E   + +++D  M G
Sbjct: 1   MKKESILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET--DLVILDVMMPG 58

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R++   ++V V +L  +      + G  AG + +L KPF+   L   ++ 
Sbjct: 59  MSGIRTCEEIRKV---SNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKA 115

Query: 117 LPQMQK 122
           L +  +
Sbjct: 116 LLRRYR 121


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R +        GF V  A     A +  EK   P+ +V+D  +  +  F 
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEK-TSPDLVVLDVMLPDMDGFT 75

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R         + +L    D    + G   G + ++ KPF  E +   +R + +   +
Sbjct: 76  VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135

Query: 124 KD 125
            +
Sbjct: 136 IE 137


>gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF+V  A    +  +   +    + +V+D  + G    
Sbjct: 7   KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQ-MDRLIERENFHLMVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L  + D    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 66  SICRRLRQKEN--QIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRR 123

Query: 121 QKSK 124
           Q  +
Sbjct: 124 QSKE 127


>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + ++        G+ V  A            E  P+ LV+D  +    
Sbjct: 1   MQTILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTE-RPDLLVLDLMLPDRD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R  P    + +  L   V+    I G   GA+ ++ KPFN   +   +R + 
Sbjct: 60  GYSIVQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R      GF V       +  +   K    + +++D  + G+ 
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNY-DLIILDIMLPGIS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    ++ + ++  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFDICKQIRAV---HNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116

Query: 119 QMQKSKDENQF 129
              +    +Q 
Sbjct: 117 SRYERLATHQQ 127


>gi|262164517|ref|ZP_06032255.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           VM223]
 gi|262026897|gb|EEY45564.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           VM223]
          Length = 376

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L     + +  ATS  +A   C K+  P+ +++D  M  +   
Sbjct: 6   TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQK-PDLVLLDIMMPEMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   D+ V +L  +   E    G   GA  ++ KP +   L    R   ++
Sbjct: 64  EVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLRL 123

Query: 121 QKS----KDENQFLD 131
           +++     ++N+ L+
Sbjct: 124 RQAMKLLAEQNETLE 138


>gi|222110176|ref|YP_002552440.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax ebreus TPSY]
 gi|221729620|gb|ACM32440.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax ebreus TPSY]
          Length = 377

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   L     + V  A S  +A    + +  P+ L++D  M G    
Sbjct: 21  TVLVVDDTPDNLTLMAGLLQGH-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDGY 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + V +L    D +    G   GA  ++ KP +   L   +     +
Sbjct: 80  EVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHLAL 139

Query: 121 QKSKD 125
           + + D
Sbjct: 140 KATAD 144


>gi|301059424|ref|ZP_07200345.1| putative Response regulator PleD [delta proteobacterium NaphS2]
 gi|300446460|gb|EFK10304.1| putative Response regulator PleD [delta proteobacterium NaphS2]
          Length = 312

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M +   +L+ + + + RK+        G+ V  A +  EA +  ++   P  ++ D  M 
Sbjct: 1   MKNDFPILIAEDNAVSRKLMEKTLRQAGYAVVSAANGREAFKIFKERFFP-IILTDWGMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +        +R+ P    VF++ +      + +I G  AGA+ +L KPF+R  L   ++
Sbjct: 60  EMDGLELCRAIRENPTEGYVFIFLITGRDSRKDIIVGLEAGADDYLTKPFDRSELIARLK 119

Query: 116 ELPQMQKSKDENQ 128
              ++ + +   +
Sbjct: 120 TALRILELEKSLK 132


>gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLLVD    V  V        GF +  A +  EA E  +K   P+ +V+D  +  +    
Sbjct: 5   LLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKH-QPDLVVLDWMLPEMSGLD 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+M     V +  +    +    I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 64  VCRELRRMGS---VGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRT 120

Query: 122 K 122
           +
Sbjct: 121 Q 121


>gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
 gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase
           [Methylocella silvestris BL2]
          Length = 469

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +    K+     +   + V  A++  +A   C +    + +++D  M G+  F
Sbjct: 4   RVLVVDDNLPNVKLLEARLSAEYYEVVTASNGADALAICARGEC-DIVLLDVMMPGMNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++   L   + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKADTLTAHIPVVMVTALDQTSDRLMGLEAGADDFLTKPIDDVALIARVRSLARL 122

Query: 121 QKSKDENQ 128
           + S DE +
Sbjct: 123 RLSLDELR 130



 Score = 84.1 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 8/130 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61
            +L+VD      +            V       EA  E          + +       L 
Sbjct: 157 RVLVVDDRRSSVETIYGALKGL-HEVELEPDALEALVEGAAGGYDLLIVSLSLEAYDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKM---IAGARAGANSFLLKPFNRETLRFAMRELP 118
             + +R +    ++ +  +    + E     +     G N +LL+P  R  L   +R   
Sbjct: 216 LCSQIRSIEATRELPILAI---AEPEDRARTLRCLDLGVNDYLLRPIERHELVARVRTQL 272

Query: 119 QMQKSKDENQ 128
           + ++  D  +
Sbjct: 273 RRKRYADNLR 282


>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++D    +R++ R    + GF VFEA +  E   +  +++ P+ +++D  M   L 
Sbjct: 3   QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGL-YVARDVKPDLILLDIMMPE-LG 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +  +R      +  +  L  +++    I G   GA+ ++ KPFN   +   +R + + 
Sbjct: 61  GLDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRR 119


>gi|159899218|ref|YP_001545465.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892257|gb|ABX05337.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 328

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD         R +     + V  A    EA    +   +P+ +++D +M  +  F 
Sbjct: 5   ILVVDDEARSIDTLRRVLERERYTVRIARDGVEALADIQA-CMPDLVLLDVTMPVMNGFE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + V  L    D E  I G   GA+ F+ KPF R  L   +R L +++
Sbjct: 64  VCRRLRDREETQLLPVAMLTGLNDDESRILGLEMGADDFINKPFERTVLLARIRSLLRVR 123

Query: 122 KSKDENQ 128
           +  +E +
Sbjct: 124 RLTEELE 130


>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
 gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
          Length = 237

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
 gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  G+ V EA            E   + +++D  M  + 
Sbjct: 1   MANILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGLLAINSE--IDLVLLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDEN 127
             S  +N
Sbjct: 118 TSSTQKN 124


>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
 gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
          Length = 240

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    VR+  R      G+ V  AT   EA      E  P+  ++D  M     L
Sbjct: 5   KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEAL-KLIAEERPDLAILDVMMPKKDGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G D+ +  L      E+ +AG  AGA+ +L KPF  E L    R L + 
Sbjct: 64  DVCRELRSH--GDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 121


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +    L    GF    AT+  +A E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCKQLRGRGA---VPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 260

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL++    +R++        GF V +A    +  +    + +P+ +V+D  +  V    
Sbjct: 5   ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKG-QALALQYIPDLIVLDLMLPRVDGLT 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  L      +  + G  +GA+ +L KPF  E L   ++ L + 
Sbjct: 64  LCQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRR 122


>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 58/133 (43%), Gaps = 3/133 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+V+    + ++  +   + G+      +  EA EF ++   P+ +++D  +     
Sbjct: 6   TTILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQR-RTPHLILLDWMLPDQSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L  ++ +R       + V  L  +   E  IAG   GA+ ++ KPF+   L   ++ L +
Sbjct: 65  LRLLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLR 124

Query: 120 MQKSKDENQFLDA 132
            +  +     + A
Sbjct: 125 RKSPEHAQSMMRA 137


>gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +      GF V   T+        +KE  P+ +++D  + G+  
Sbjct: 3   KKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ +L KPF+   L   ++ + +
Sbjct: 62  EELCKRIRQ---FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+ D    + +V      D GF    A +  +  E    E   +  ++D  M  +  
Sbjct: 25  NRILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEMDG 84

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +   TD  V  L         + G R GA+ ++ KPF+ + L   +    + +
Sbjct: 85  L-ETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRRE 143

Query: 122 KSKDE 126
               +
Sbjct: 144 NKHRQ 148


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMA 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKAE 122


>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V    +      G+ V  A    EA E  +KE  P  +++D  +     +
Sbjct: 7   KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEK-PTLILLDWMLPVYDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+      V +  L  +     + +    G + ++ KPF  E L   +R + + 
Sbjct: 66  TVLRRIRKKSE---VPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRR 122

Query: 121 QKSKDENQ 128
            +  ++ +
Sbjct: 123 LEKSNKQK 130


>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + ++  + +++D  M  +  F
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + ++        GF VF A    E     +     + +++D  +  +
Sbjct: 1   MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSY-DIILLDVMLPKM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R+    + V +  L  + +    + G   GA+ ++ KPF+ E L   ++ L
Sbjct: 60  SGMEVCKRIRE---TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKAL 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LRRTK 121


>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 283

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+       + R    + G+ V       +A      E+  + +V+D  + G+  F
Sbjct: 31  RVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQA-TEIGYDAIVLDLMLPGLDGF 89

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L    D +  I G  AGA+ +L KPF+   L   +R L + 
Sbjct: 90  EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 147


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A     A +   +    + +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LIRR 120


>gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    + +  ++     G+ VF A+   E  E  +K + P+ +++D  M  +  
Sbjct: 7   QTILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQK-VSPDLILMDVMMPRMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ        + +L    +    +AG  AGA+ ++ KP     L   +  L +
Sbjct: 66  IEACQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLR 125

Query: 120 M 120
            
Sbjct: 126 R 126


>gi|303246217|ref|ZP_07332497.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
 gi|302492280|gb|EFL52152.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio fructosovorans JJ]
          Length = 300

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD      ++     +   +    ATS  EA E    +  P+ +++D  M G+  
Sbjct: 5   KKILIVDDMRANTRLLAKKLSGE-YECLTATSGMEALEVVHAQ-QPDLILLDILMPGMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++       + V ++    + E    G   GA  ++ KPF    ++  +R   +
Sbjct: 63  FETCRQLKDDERSRKIPVIFITSLDEDEDEAKGLDLGAVDYIRKPFRMPIVKARIRNHIE 122

Query: 120 MQKSKD---ENQFLDAI 133
           +++++D   E  F+D++
Sbjct: 123 LKRARDLLEEQAFIDSL 139


>gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 242

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ +    + GF V  A    E  +        + LV+D  + G   
Sbjct: 7   KKILVVDDDVRLRELLQRYLTEQGFTVKTANDAKE-MDSILGSDTIDLLVLDLMLPGEDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R     T + +  L    D    I G   GA+ +L KPFN   L   +  + +  
Sbjct: 66  LSICRRMRGNATMMPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVLRRH 125

Query: 122 K 122
           +
Sbjct: 126 E 126


>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 705

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR +   L  + G+    A S  +A    + E  P+ +++D  M G+  +
Sbjct: 7   TILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVD-ERAPDLILLDIMMPGMDGY 65

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L    +    ++G  AGA  +L KP     L   +R L ++
Sbjct: 66  EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 256

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A    E  +   +    + +V+D  M G     
Sbjct: 7   ILIVDDDRDIRQLLADYLEKQGLRCTTAADGRE-MKAALETHRIDLIVLDLMMPGEDGLT 65

Query: 63  -IAHVRQMPL-GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++R       +  +  L    +    I G   GA+ +L KPF    L   +R + + 
Sbjct: 66  LCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVLRR 125

Query: 121 QKSKDENQFLDA 132
            ++   N  LDA
Sbjct: 126 TRALPPN--LDA 135


>gi|223936999|ref|ZP_03628907.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
 gi|223894280|gb|EEF60733.1| two component transcriptional regulator, LuxR family [bacterium
           Ellin514]
          Length = 217

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R+    +     +    A +     E   KE  P+ ++ D  M    
Sbjct: 1   MKKILVIEDEPEMRRNLVTILRLEQYQPLGAENGRLGLELAAKEK-PDLILCDVMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      +   +L  + +      G   GA+ +L KP  R  L  A+    
Sbjct: 60  GYGVLKALRENAATESIPFIFLSAKGEKIDQRNGMNLGADDYLTKPVARAELLEAIVARF 119

Query: 119 QMQKSKDENQF 129
           + Q+ +   +F
Sbjct: 120 RRQEQQARPEF 130


>gi|149920915|ref|ZP_01909376.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
 gi|149818187|gb|EDM77642.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
          Length = 289

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK----ELLPNYLVIDESMEG 58
            LLLVD    +R+V  +     G+ V +A +  EA +  E         + LV+D SM  
Sbjct: 35  RLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPE 94

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    R      D  V +L    D    I G   G + ++ KPF+   L   ++ L 
Sbjct: 95  IDGFDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKVLL 154

Query: 119 QMQKSKDEN 127
           +    +   
Sbjct: 155 RRVGRQRRL 163


>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
 gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
          Length = 253

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +  + GF         +A E       P+ +++D  + G 
Sbjct: 30  MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSK-PDLVLLDLMLPGS 88

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R     +DV +  L  + D   ++ G  +GA+ ++ KPF    L   +R  
Sbjct: 89  DGIEVCRQIR---GESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRAR 145

Query: 118 PQ 119
            +
Sbjct: 146 LR 147


>gi|110597377|ref|ZP_01385664.1| Response regulator receiver:Sigma-54 factor, interaction
           region:Helix-turn-helix, Fis-type [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340921|gb|EAT59392.1| Response regulator receiver:Sigma-54 factor, interaction
           region:Helix-turn-helix, Fis-type [Chlorobium
           ferrooxidans DSM 13031]
          Length = 451

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +R+V  +   + G+ V  A S  E     +    P+ ++ D  M G+
Sbjct: 1   MKAKILVIDDDTSLRRVLEYNLQEEGYEVETAASGEEGLMRLDL-FGPDLVITDMKMTGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                         +  V  +      +  +   +AGA  ++ KPFNR++LR  +++  Q
Sbjct: 60  DGMKVLKSVRERSPETLVIIITAFGSVDAAVEAMKAGAYDYITKPFNRDSLRLTVKKALQ 119

Query: 120 MQKSKDENQFLDAI 133
                +EN+ L  +
Sbjct: 120 FSGLSEENRRLKRV 133


>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + E+  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMD-EVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC
           23134]
 gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC
           23134]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +LLV+  + + ++ +      G+            +        +  ++D  + 
Sbjct: 1   MKDEIKILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAG-FDLCILDVMLP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F    +       V + +L  +   E  I G +AGA+ ++ KPF+ E L   +  +
Sbjct: 60  KMDGFTLAEKIREQNKKVPIIFLTAKSMKEDAIKGFKAGADDYIHKPFSMEELLLRIEAI 119

Query: 118 PQMQKSK 124
            +    +
Sbjct: 120 MRRVGEQ 126


>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+++    + +  +      G+ V  A+      +    E  P+ +V+D  +  +  L
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTE-QPDLVVVDVMLPRMGGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R+     ++ +  L  +      +AG + GA+ +L KPF  + L   +  L + 
Sbjct: 63  EVIREIRKED--PELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRR 120

Query: 121 QKSKDENQFLDAI 133
           ++S+ E     AI
Sbjct: 121 RRSRGEGAQPKAI 133


>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    + +    L    G++V  A       E+ +     + L++D  + G   L
Sbjct: 2   RILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSY-DLLILDWMLPGKTGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+   G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQQLRRQ--GKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118

Query: 121 QKSK 124
             S+
Sbjct: 119 SGSQ 122


>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 235

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++  +  +  GF     T   +A    E E   +++++D  +  +  
Sbjct: 3   KQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEP-FDFILLDIMLPRLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  +  + D    +     GA+ +L KPF+   L   ++ + +  
Sbjct: 62  IEVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRT 121

Query: 122 KSKDEN 127
             + + 
Sbjct: 122 SKEQQE 127


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L++D    +R +      + GF  F A S  EA    E  ++ + +++D  M G  
Sbjct: 1   MLNILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVM-DLVILDIMMPGED 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E  + +R     ++V + +L  + +    +   + G + +++KPF+   L   M  + 
Sbjct: 60  GFEVCSRIR---GKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++        GF    A+   +A         P+ +++D  +  + 
Sbjct: 11  MALVLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAA-RPDLVLLDIMLPEMD 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V  +    +    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 70  GLEVLRRIRSSG-HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRR 128


>gi|237717067|ref|ZP_04547548.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405835|ref|ZP_06082385.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647796|ref|ZP_06725348.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806190|ref|ZP_06765037.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|229443050|gb|EEO48841.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356710|gb|EEZ05800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636704|gb|EFF55170.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294446446|gb|EFG15066.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1323

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%)

Query: 1    MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54
            M       +LL+V+    +R   R  F    + V +     EA   C     P+ ++ D 
Sbjct: 1045 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1102

Query: 55   SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             M G    E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+ 
Sbjct: 1103 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1162

Query: 113  AMRELPQMQKSKDENQFLDAI 133
             ++ L   +  + +     AI
Sbjct: 1163 KVQGLIDNRNRQRQFFMRQAI 1183


>gi|190565563|ref|ZP_03018483.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|190563590|gb|EDV17555.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
          Length = 511

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V R   +  G+ +  A     A E   K+ +P+ ++ D SM  +   
Sbjct: 4   RILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIM-KDWVPDLVITDISMPNMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V +  L ++ D    +     GA+ ++ KPFN   L   +R   + 
Sbjct: 63  ALCKELRAR---SQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRR 119


>gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+V+     +++ RH      F V  A       +        + +++D  +     
Sbjct: 4   KSILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDCNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  VR   + +D+ V  L    D   ++     GA+ ++ KPF++  L   +    +
Sbjct: 64  LELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLR 123

Query: 120 MQKS 123
             ++
Sbjct: 124 RAQN 127


>gi|117926683|ref|YP_867300.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
 gi|117610439|gb|ABK45894.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
          Length = 346

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LL+VD +    +V   +     + V  A +  +A      E  P+ +++D  M G+   
Sbjct: 9   TLLVVDDTPENIEVLSGVLRSC-YRVKAALNGEKALRIAAMEPRPDMILLDVMMPGMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P+   + V ++  +   E  + G + GA  ++ KP +   +   +R    +
Sbjct: 68  EVCRRLKADPITAHIPVIFVTAKATVEDELEGLQLGAVDYITKPISPPIVELRVRTQLAL 127

Query: 121 QKSKDENQFLDAI 133
              + E + +  +
Sbjct: 128 YDQQRELERMVQV 140


>gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236]
 gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae
           MJ-1236]
 gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae
           LMA3894-4]
          Length = 240

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 244

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    +  +        GF V    +   A E   +    + +V+D  M
Sbjct: 1   MKTEKYKILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIMM 60

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            G+      +R +     V +  L    D    I G   GA+ +L KP N   L   ++ 
Sbjct: 61  PGMSGL-DVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKA 119

Query: 117 LPQMQKS 123
           + +  ++
Sbjct: 120 IIRRTEN 126


>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 242

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +      GF V  A    EA E  E E  P+ +++D  +     
Sbjct: 3   KKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVE-EYNPDLMILDLMLPKKDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++    D+ +  +  +      + G   GA+ ++ KPF+   L   ++   + +
Sbjct: 62  LEVA-REVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSR 120


>gi|299144991|ref|ZP_07038059.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Bacteroides sp. 3_1_23]
 gi|298515482|gb|EFI39363.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Bacteroides sp. 3_1_23]
          Length = 1323

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%)

Query: 1    MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54
            M       +LL+V+    +R   R  F    + V +     EA   C     P+ ++ D 
Sbjct: 1045 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1102

Query: 55   SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             M G    E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+ 
Sbjct: 1103 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1162

Query: 113  AMRELPQMQKSKDENQFLDAI 133
             ++ L   +  + +     AI
Sbjct: 1163 KVQGLIDNRNRQRQFFMRQAI 1183


>gi|296159892|ref|ZP_06842713.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
 gi|295889875|gb|EFG69672.1| two component transcriptional regulator, LuxR family [Burkholderia
           sp. Ch1-1]
          Length = 364

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +        G+ V  A     A +   + + P+ +++D  M G+  F 
Sbjct: 23  VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLAR-ITPDAVLLDALMPGLDGFE 81

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + V ++    D E ++ G R G   ++ KP     +   +    Q  
Sbjct: 82  TCRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141

Query: 122 KSKDE-NQFLD 131
           + + + ++ L+
Sbjct: 142 RQQRQADRVLE 152


>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
 gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella veroralis F0319]
          Length = 876

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D +  +R   R + +   + V EA+      E   +  +P+ ++ D  M  +    
Sbjct: 635 ILIIDDNSDIRTYLRSVLSQK-YNVSEASDGKRGLELVRR-TVPDIVLSDIMMPVMDGLE 692

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++     + + V  L      E+   G   GA++++ KPF+   L   +  L + +
Sbjct: 693 FCEQLKTDKAISHIPVILLTARSMDEQRAEGYEHGADAYISKPFSLRLLLSRIENLIESR 752

Query: 122 KSKDE 126
           K   +
Sbjct: 753 KKLSQ 757


>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ D +  V +       + G +   A    EA E  +KE + + +++D  M    
Sbjct: 1   MKKILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENV-DLVILDLMMPKIF 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++     V +  L  + +    I G   GA+ +++KPF+   +   ++ + 
Sbjct: 60  GTEVCKEIRKISE---VPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIF 116

Query: 119 QMQKSKDEN 127
           +   SK + 
Sbjct: 117 RRVNSKSDL 125


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +         F V  A S  EA      E  P+ +V+D  +  +  
Sbjct: 6   TRVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALA-AEFDPDLVVLDVMLPDLDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R   +   V V +L      E  I+G  AGA+ ++ KPF+ E +   +R + +  
Sbjct: 65  FQVAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRS 124

Query: 122 KSK 124
           + +
Sbjct: 125 QVE 127


>gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 227

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ V  A +  +A +  +K+  P+ +++D  M
Sbjct: 1   MKKKDIQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKK-PHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R+MP      + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKV 119

Query: 115 RELPQMQKSKD 125
           + L +  + +D
Sbjct: 120 KALLRRYREED 130


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 1   MPTILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFQVCKAIR--EENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 118 RRIEVHDE 125


>gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 227

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    VR+         G  V  A S  E         +P+ +V+D  + G+ 
Sbjct: 1   MSRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAA-VPDVVVLDWMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R  P    V +  +    D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GLEVCRRLRT-PERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 233

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     +K     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +++ V  L  + D +  ++G R GA+ +L KPF+   L   +  L +
Sbjct: 61  DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|254411332|ref|ZP_05025109.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC
           7420]
 gi|196181833|gb|EDX76820.1| hypothetical protein MC7420_1823 [Microcoleus chthonoplastes PCC
           7420]
          Length = 121

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   R++   L    G  V  A+   EA E   +   P+ +V+D  M  + 
Sbjct: 1   MSTVLVVEDSLAQRQMISDLLKGSGLTVSVASDGVEALEHILQS-RPDVVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKADPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELIGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+D    + ++        G  V  A          E     + +++D  M G+  
Sbjct: 3   TRVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPY-DAVLLDVMMPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       V +  L    D    + G   GA+ +L KPF+   L   +R + +  
Sbjct: 62  LEVCKRIRAKT-QVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRA 120

Query: 122 KSKDENQFLDA 132
           +       ++A
Sbjct: 121 QPTAVADRMEA 131


>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
 gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
           34H]
          Length = 240

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     ++ +  L  + D    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 66  SICRRLRQNSN--NIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRR 123

Query: 121 QKSKD 125
           +  + 
Sbjct: 124 RTQEA 128


>gi|95931004|ref|ZP_01313732.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
 gi|95132900|gb|EAT14571.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
          Length = 454

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD  H++R          G+ V    S  EA ++  +   P+ + +D  + G+   
Sbjct: 5   RVLVVDDEHLIRWSLEQSLKKQGYHVQTVGSGEEALDYV-RSDSPDLVFLDIQLPGIDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   + +D+ V  +      E  +   + GA  ++ KPFN + L   +R+  + Q 
Sbjct: 64  ETLEKIKEIDSDISVIMITALGVLETAVKAMQLGAYDYINKPFNLDELSVVLRKALETQA 123

Query: 123 SKDENQFL 130
            K E + L
Sbjct: 124 LKKEVEHL 131


>gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 401

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V   L    GF V  A +   A +  E+ + P  +++D  M G+  F 
Sbjct: 11  ILIVDDNQNNLDVLFDLLKKSGFKVLVALNGESAIKQIER-IHPTLILLDVMMPGIDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ V ++    +    + G + GA  ++ KPF  E +   +     ++
Sbjct: 70  TCRRLKTNPTTQDIPVIFMTALSETVNKVQGFQVGAVDYITKPFQYEEVLSRLNTHLTIR 129

Query: 122 KSKDENQFLDA 132
             + + Q  +A
Sbjct: 130 NLQKKLQEKNA 140


>gi|226227836|ref|YP_002761942.1| putative two-component response regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226091027|dbj|BAH39472.1| putative two-component response regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 358

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              L+VD    +R + R L    GF   EA+S  EA E    E +P  ++ D  M G+  
Sbjct: 10  RRCLIVDDEPSMRGILRRLMTAEGFECLEASSGSEALERLAAEPVP-LMLSDFHMPGMDG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +         V  +    D    +    +GA  +L KPF+ E +R  + +  + +
Sbjct: 69  AELLRQVRERWPHTAVVMITAISDVNLAVRCLDSGALDYLTKPFSIEEVRARVAQALEKR 128

Query: 122 KSKDENQ 128
           +   ENQ
Sbjct: 129 RLLLENQ 135


>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + ++  + +++D  M  +  F
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 458

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         + V  A    EA +    E  P+ +++D  M  +  F
Sbjct: 4   KILVVDDIPSNVKLLEAQLKAEYYTVIVAYDGEEAIDLV-AEQQPDIILLDVMMPKMSGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL T + +  +    D    + G  AGA+ FL KP +   L   ++ L ++
Sbjct: 63  EVCKKLKNDPLTTYIPIIMVTALHDTHDRVEGINAGADDFLTKPIDETALSARIKSLVRL 122

Query: 121 QKSKDEN 127
           +   DE 
Sbjct: 123 KMIIDEL 129



 Score = 81.0 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 42/129 (32%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      +   ++       +       EA +   K+   + ++ D         
Sbjct: 158 NILVVDEDTFQAEQIHNVLKQRFRSIKILHDPKEALKVGIKDNY-DLIISDMQFSKTDGL 216

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R         +  L  + D   ++     GAN +L  P +   L   +    + 
Sbjct: 217 RLCSKFRSKVETRYTPILILSEDYDKSNLVKALDVGANDYLTVPLDESELIARVNLQVKR 276

Query: 121 QKSKDENQF 129
           ++ +D  + 
Sbjct: 277 KRYQDALRM 285


>gi|239827082|ref|YP_002949706.1| response regulator receiver protein [Geobacillus sp. WCH70]
 gi|239807375|gb|ACS24440.1| response regulator receiver protein [Geobacillus sp. WCH70]
          Length = 166

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    +  +     +  G+   +  S   A ++ E   + + +++D  M  + 
Sbjct: 1   MYTILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKV-DLVLLDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R     +DV +  +        ++ G   GA+ ++ KPF+   L   +  + + 
Sbjct: 60  GWETCQRIRE-FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRR 118


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKTE 122


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPAALE-AGMQGAIDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + K+    F    + V  A +  EA E  +    P+ +++D +M  +   
Sbjct: 4   KILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTA--PDIILLDINMPQMDGL 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         + +L   V+ E  + G  +G + ++LKPF+ + L   +    + 
Sbjct: 62  EVCRKIR---DKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKR 118

Query: 121 QKSKDEN 127
           ++   +N
Sbjct: 119 EQRHSQN 125


>gi|124009577|ref|ZP_01694251.1| adenylate cyclase [Microscilla marina ATCC 23134]
 gi|123984816|gb|EAY24791.1| adenylate cyclase [Microscilla marina ATCC 23134]
          Length = 362

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M  ++L+VD      K+ R         F + +AT+  +A +  +K   P+ +++D  M 
Sbjct: 1   MKATILIVDDEVTNLKILREYLTTADQEFRILQATNGKQAFDIAQKAD-PDLVIMDWMMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +     + +++      ++ V     +   + +     AGA  ++ KP ++  L   +R
Sbjct: 60  VMSGIDALKNIKTTESTQNIPVIMATAKTSAQDLKEALEAGAMDYVRKPIDKTELLARVR 119

Query: 116 ELPQMQKSKDENQFL 130
              Q+  +  +++ L
Sbjct: 120 SAIQLSHAYKQSEEL 134


>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + R      G+ V  A S  EA E    E  P+ L++D  +  + 
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERW--EDGPDVLILDVMLPDID 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + + 
Sbjct: 58  GYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117

Query: 121 QKSKD 125
              ++
Sbjct: 118 VTKRE 122


>gi|186685999|ref|YP_001869195.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102]
 gi|186468451|gb|ACC84252.1| response regulator receiver, CheY [Nostoc punctiforme PCC 73102]
          Length = 121

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   R++   L    G  V  A+   EA E  +    P+ +V+D  M  + 
Sbjct: 1   MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQVAP-PDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G  V  A     A     +   P+ +V+D  +  +   
Sbjct: 28  RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAV-RAARGFRPDVVVLDIMLPDMDGL 86

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 87  AVLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSG 146

Query: 123 SKDENQ 128
           +    +
Sbjct: 147 AAQAAR 152


>gi|160883013|ref|ZP_02064016.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483]
 gi|156111485|gb|EDO13230.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483]
          Length = 1347

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+     F+   + +  A       E   +E +P+ ++ D  M  +    
Sbjct: 1093 ILVVEDNDDIREYIATSFST-NYRILTAADGKGGLEQA-QEFIPDIIISDIMMPVMDGIE 1150

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + L   +  L + +
Sbjct: 1151 LCKQIKEDVCTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLLESR 1210

Query: 122  KSKD 125
            K   
Sbjct: 1211 KKLA 1214


>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+ +   +   + V EA +  +A +   ++   + +++D  M  +   
Sbjct: 5   KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  L  + D +  + G   G + ++ KPF+ + L   +  + + 
Sbjct: 65  QVCKEIRK---YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121


>gi|91203464|emb|CAJ71117.1| strongly similar to sigma 54 response regulator [Candidatus
           Kuenenia stuttgartiensis]
          Length = 448

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   L    G+     T+  +A E   K+     ++ D  M  + 
Sbjct: 1   MKKILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +   + + + V  +         +   + GA+ ++ KPF R+ L   + ++ QM
Sbjct: 61  GIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQM 120

Query: 121 QKSKDENQFLDA 132
           Q+ + E   L +
Sbjct: 121 QRLEGEVDRLRS 132


>gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110]
 gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 457

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  EA     +    + +++D  M  +  F
Sbjct: 4   RILVVDDVPANVKLLEARLSAEYFDVMTASNGTEALAISRRAEC-DIILLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +           G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKTDPATHHIPVVMVTALDSPSDRNRGLEAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    L       V    +  EA     +      +V +D +    L 
Sbjct: 157 RILLVDDRQSSYERLASLLAAE-HTVDVEPNPTEALFHAAEGNYDLLIVSLDLNNFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEK---MIAGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +    D E    ++ G   G N +LL+P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAI---ADPENSTRLLRGLEIGVNDYLLRPIDKTELLA 266


>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
 gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ +  V  +    F   G+         +  E   KE   + L++D  +  + 
Sbjct: 1   MK-ILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERW-DLLIVDWMLPIMD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++     V +  L  +      + G   GA+ ++ KPF+  TL   ++ + 
Sbjct: 59  GVTLCRKIRELSK---VPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVT 115

Query: 119 QMQKSK 124
           +  +++
Sbjct: 116 RRFQAE 121


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA          N +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q+   +D+ +  L  +      I G  +GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-EVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 119 TQGEVTN 125


>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1210

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LL + S + R+V   +    G+ V  A +  +A    E++   + +++D  M  +   
Sbjct: 934  RILLAEDSPVNREVAVGMLEQLGYEVEVAENGRQALAAAERDH-FDIVLMDCQMPEMDGL 992

Query: 63   IA--HVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             A   +R+         + +  L              AG + +L KPF +  L+  +R+ 
Sbjct: 993  TATGEIRRRETASGRRRLPIIALTAHAMQGDREHCLTAGMDDYLSKPFTQMQLQGIVRKW 1052

Query: 118  PQMQK 122
                +
Sbjct: 1053 LSHHE 1057


>gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+V+    ++++        G     A SV  A+    +E +P+ +++D  + G+  L
Sbjct: 4   NILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLM-RETIPDLILLDWMLPGMNGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   ++   L   + +  L    D    + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 63  EFARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122

Query: 121 QKSK 124
           +  +
Sbjct: 123 RAPQ 126


>gi|294777579|ref|ZP_06743030.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
 gi|294448647|gb|EFG17196.1| response regulator receiver domain protein [Bacteroides vulgatus
            PC510]
          Length = 1357

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAMS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+ P    + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+   ++  +         + V       EA ++       + L++D  +  +  F
Sbjct: 9   RILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEY-DVLILDIMLPKLDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V +L      +  + G   GA+ +L+KPF+ E L   +R + + 
Sbjct: 68  EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRK 125


>gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + R      G+   EA+    A +    E  P+ +++D  M  V 
Sbjct: 1   MK-ILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKI--EERPDLVLLDIMMPEVD 57

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++ M     + V  L    D E  I G  AGA+ ++ KPF+   L   +R + 
Sbjct: 58  GISLCRQLKTMD--PALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVL 115

Query: 119 QMQK 122
           +  +
Sbjct: 116 RRTR 119


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++VD    +R++        G+    A     A     ++ +P+ +++D  M G+ 
Sbjct: 1   MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLI-QDTVPDLILLDIEMPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + V +L +       +A    GA+ ++ KPF+ E L   ++   
Sbjct: 60  GLEVCREIRSQLS---IPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANI 116

Query: 119 QM 120
           +M
Sbjct: 117 RM 118


>gi|160888763|ref|ZP_02069766.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492]
 gi|156861662|gb|EDO55093.1| hypothetical protein BACUNI_01181 [Bacteroides uniformis ATCC 8492]
          Length = 1390

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R+  R   ++  + +   ++  EA     KE +PN ++ D  M  +  
Sbjct: 1127 QKILIVEDNDELREYLRRTLSEQ-YNIQVCSNGKEALTIV-KEYMPNLVISDIMMPEMRG 1184

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + +  L      + +I G ++GA+ +++KPFN   LR  +  L  
Sbjct: 1185 DELCHILKNDIETSHIPIILLTALNTDKNIIEGLQSGADEYIVKPFNIGILRANIANLLT 1244

Query: 120  MQKS 123
             +  
Sbjct: 1245 NRAL 1248


>gi|160884751|ref|ZP_02065754.1| hypothetical protein BACOVA_02740 [Bacteroides ovatus ATCC 8483]
 gi|156109786|gb|EDO11531.1| hypothetical protein BACOVA_02740 [Bacteroides ovatus ATCC 8483]
          Length = 1323

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%)

Query: 1    MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54
            M       +LL+V+    +R   R  F    + V +     EA   C     P+ ++ D 
Sbjct: 1045 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1102

Query: 55   SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             M G    E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+ 
Sbjct: 1103 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1162

Query: 113  AMRELPQMQKSKDENQFLDAI 133
             ++ L   +  + +     AI
Sbjct: 1163 KVQGLIDNRNRQRQFFMRQAI 1183


>gi|298479885|ref|ZP_06998084.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298273694|gb|EFI15256.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1372

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L +  
Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1231 KKLIAQ 1236


>gi|294674733|ref|YP_003575349.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
 gi|294472402|gb|ADE81791.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
          Length = 1342

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+V+ +  + K    LF    + V  A    +A +        + +V D  M  +   
Sbjct: 1088 TLLVVEDNEDMLKFLEQLF-AADYNVITAPDGQQAWDIAISRSDIDLVVSDVMMPVMTGA 1146

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  + D E +  G R GA++++LKPF+ E+L   +  L ++
Sbjct: 1147 ELCNMIKGNMSTSHIPVILLTAKGDPEDVKDGYRNGADAYVLKPFDPESLSLQISNLLKL 1206

Query: 121  QKSKDE 126
             +++ +
Sbjct: 1207 IQNRQQ 1212


>gi|293372359|ref|ZP_06618743.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292632542|gb|EFF51136.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1372

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGII 1170

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L +  
Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1231 KKLIAQ 1236


>gi|293373752|ref|ZP_06620098.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292631242|gb|EFF49874.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1323

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++LL+V+    +R   R  F    + V +     EA   C     P+ ++ D  M G   
Sbjct: 1052 NTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDVMMPGIRG 1109

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+  ++ L  
Sbjct: 1110 DELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKLKVQGLID 1169

Query: 120  MQKSKDENQFLDAI 133
             +  + +     AI
Sbjct: 1170 NRNRQRQFFMRQAI 1183


>gi|262195305|ref|YP_003266514.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262078652|gb|ACY14621.1| GAF sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 2107

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +       V  A +  EA +  ++    + +++D  M  +  
Sbjct: 1987 KKILVVDDDVRNIFAITTILEQHLMDVVYAENGREALDQLDRNPDIDIVLMDIMMPEMDG 2046

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R       + V  L  +           AGA+ ++ KP + + L   +R    
Sbjct: 2047 YEATRRIRSDGRYGRLPVIALTAKAMKGDRDKCIEAGASDYITKPVDPDQLISLLRVWLY 2106

Query: 120  M 120
             
Sbjct: 2107 R 2107



 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++   +  +       + GF    A S  E      K   P+ + +D  +  +    
Sbjct: 1720 LLIIEDDDVFARTLLDAVRERGFRGLVALSGNEGL-AVAKSYKPDAITLDLRLPDMDGWV 1778

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118
             +  ++       + V+ +    D      G   GA +FL KP   E L  A   +    
Sbjct: 1779 VLDRLKHDSETGHIPVHIISAAADE---RRGLENGALAFLNKPVGPEALDVALSDIESFL 1835

Query: 119  QMQ 121
              +
Sbjct: 1836 DRR 1838



 Score = 71.4 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+   + R+    L +          S   A +  E     + ++ID  +  +  
Sbjct: 1840 KRVLIVEDDDVQRRALVELIDGEDVSTEAVGSAEAALQALESGT-FDCMIIDLKLPEMSG 1898

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E I   ++ P    + V     +   E      R  A + ++K   + E L  
Sbjct: 1899 DELIEKFKERPAFRRMPVIVYTGKELSEGDEISLRRLAETIIVKDVRSPERLLA 1952


>gi|237721944|ref|ZP_04552425.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_2_4]
 gi|229448813|gb|EEO54604.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_2_4]
          Length = 1323

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++LL+V+    +R   R  F    + V +     EA   C     P+ ++ D  M G   
Sbjct: 1052 NTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDVMMPGIRG 1109

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+  ++ L  
Sbjct: 1110 DELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKLKVQGLID 1169

Query: 120  MQKSKDENQFLDAI 133
             +  + +     AI
Sbjct: 1170 NRNRQRQFFMRQAI 1183


>gi|237721900|ref|ZP_04552381.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448769|gb|EEO54560.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1372

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L +  
Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1231 KKLIAQ 1236


>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A      R+   +    + L++D  +     L
Sbjct: 2   RILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDY-DLLILDWMLPHQSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  ELCQQLRSQ--GKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRR 118

Query: 121 QKSKDEN 127
             + + N
Sbjct: 119 SAATETN 125


>gi|189464649|ref|ZP_03013434.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM
            17393]
 gi|189436923|gb|EDV05908.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM
            17393]
          Length = 1344

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+  +  F D  + V  A    E  E   +  +PN +V D  M  +    
Sbjct: 1094 VLVVEDNSDIREYIKSSFADI-YEVITAKDGQEGWE-LTQARIPNVIVSDIMMPIMDGVE 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V++    + + V  L  +        G  +GA+++L KPF+ + L   +  L + +
Sbjct: 1152 LCKKVKEDMRTSHIPVILLTAKDSLHDKEEGYASGADAYLTKPFSAKLLHSCINNLLETR 1211

Query: 122  KSKDENQFLDAI 133
            K       L  +
Sbjct: 1212 KKIASQLLLADV 1223


>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
 gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R+  +      GF + EA S  +  E  E    P+  V+D  + G+  F
Sbjct: 4   KVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNK-PDVAVLDIMLPGIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      ++ +  L  +      I G   GA+ +L KPFN   L   ++ + +   
Sbjct: 63  EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 122

Query: 123 SKDENQFL 130
            K  N  +
Sbjct: 123 QKQNNSQI 130


>gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +     ++ G+ V++  +  EA   C K+   +  ++D  +  +  
Sbjct: 3   KKILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAM-KCIKQSQIDLAILDIMLPDIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+        +  L  +++    I G   GA+ ++ KPFN   +   ++   +
Sbjct: 62  FRLCQKIREKFYF---PIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLR 118

Query: 120 MQKS 123
             +S
Sbjct: 119 RYQS 122


>gi|160884678|ref|ZP_02065681.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483]
 gi|156109713|gb|EDO11458.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483]
          Length = 1372

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1113 LLIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L +  
Sbjct: 1171 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1231 KKLIAQ 1236


>gi|315224472|ref|ZP_07866299.1| DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga ochracea F0287]
 gi|314945493|gb|EFS97515.1| DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga ochracea F0287]
          Length = 934

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+ +  +R+  R++ +D  + + EA +  E  E  +K  LP+ ++ D  M      
Sbjct: 686 TVLIVEDNEDMRQFIRYILSD-DYNLIEAENGEEGFEVAKKH-LPDVVISDVMMPKTDGF 743

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    ++       + V  L      E+   G  +GA++++ KPFN + L+  +R+L + 
Sbjct: 744 DLCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLIEN 803

Query: 121 QKSKDE 126
           +K   E
Sbjct: 804 RKKIRE 809


>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
 gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|224540766|ref|ZP_03681305.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517633|gb|EEF86738.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1377

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+V+    +R       ++  +M  E ++  EA         P+ ++ D  M  +  
Sbjct: 1135 RHVLVVEDDEEIRHYICRELSNDFYM-TECSNGKEALASILSHT-PDLIISDVMMPEMDG 1192

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +RQ      + +  L      E  + G   GA+++L+KPF+ E LR  +  L +
Sbjct: 1193 LTLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNLIR 1252

Query: 120  MQKSKD 125
             ++   
Sbjct: 1253 RREQLR 1258


>gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + +V +      G+ V+ A +  +A      E  P+ +++D  +  +  
Sbjct: 6   RKILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGY-NEFNPDLIILDLMLPDISG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++ L   V +  L  +V  +++I G   GA+ ++LKPF+ + L   +  + +
Sbjct: 65  EEICKRIRKISL---VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLR 121

Query: 120 M--QKSKDENQ 128
              ++S ++N+
Sbjct: 122 RTVKESSEDNK 132


>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 236

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            L++V+    +  + +      G+ V  A+S  E  E   K      ++ID  +  +  F
Sbjct: 4   RLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDF-KTYEFALVMIDIMLPEMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   +  D+ V  +  +      + G + GA+ ++ KPF+   +   +    +  K
Sbjct: 63  TLCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYK 122

Query: 123 SKDENQFLDAI 133
             D    ++ I
Sbjct: 123 KVDRESAVNGI 133


>gi|300868772|ref|ZP_07113383.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506]
 gi|300333333|emb|CBN58575.1| putative chemotaxis protein [Oscillatoria sp. PCC 6506]
          Length = 121

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++VD  H  R++  +L    G  V EA+   EA E  E    P+ +++D  M G+ 
Sbjct: 1   MKTVIVVDDQHSHREMISNLLKGSGINVIEASDGVEAIEKIEVNC-PDLIILDIVMPGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  PL  ++ + +  ++ +      G + GA++++ KPF    L   +++  
Sbjct: 60  GFEVCRRLKNNPLTQNIPIVFCSVKGEEFDRYWGIKQGADAYIAKPFGPRELVGTVKQFL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 227

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    VR+         G  V  A S  E         +P+ +V+D  + G+ 
Sbjct: 1   MFRVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAA-VPDVVVLDWMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R  P    V +  +    D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GLEVCRRLRT-PERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    E E+  +  ++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIE-EVKVDMAILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A     A E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K  +
Sbjct: 116 RRVKKAE 122


>gi|189465215|ref|ZP_03014000.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM
            17393]
 gi|189437489|gb|EDV06474.1| hypothetical protein BACINT_01560 [Bacteroides intestinalis DSM
            17393]
          Length = 1348

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++LLV+ +   R     L +   + V EA    E  E       P+ ++ D  M     L
Sbjct: 1098 TILLVEDNKEFRHYMFELLSKK-YNVLEAGDGEEG-ERIATTKFPDLIISDIMMPKVDGL 1155

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L      E  + G  +GA+ ++ KPFN + L   +++L   
Sbjct: 1156 ELCKRIKSNIQVSHIPVILLTARSTDESKLFGYESGADEYISKPFNLDILLLRIQKLINE 1215

Query: 121  QKSKDE 126
            +K++  
Sbjct: 1216 EKARQR 1221


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + +V        GF    A +  EA +    +  P+ +++D  +     +
Sbjct: 7   KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEA-KMLYMDYNPDLVLLDMMIPQVDGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R+        V  +  + D    +     GA+ +++KPF  + L   ++ + + 
Sbjct: 66  DVLKWIRKQGER---PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122


>gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 853

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D    +R + R      G+ V EA     A E  E+   P+ +++D  M  +  F 
Sbjct: 8   ILVADDDPAMRFMLRRALEKDGYAVIEAEDGAAALEAYEQAE-PDIVLMDVLMPVLDGFA 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A ++ +P      V  +    D   +    ++GA  ++ KP     LR  +R L Q Q
Sbjct: 67  LCAQLQTLPRHRRAPVLMITGLDDDASVEKAYQSGATDYITKPIQWAVLRQRVRRLLQAQ 126

Query: 122 KSKDENQFLD 131
            ++   +  +
Sbjct: 127 HTEKALKARE 136


>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 4   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 62

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 63  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 119

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 120 LRRSEEPAPEQL 131


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    + K+ +       + VF+A    E  E  E E   + +++D  +  +   
Sbjct: 5   KILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESED-IDLVLLDLMIPKISG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   ++V V  +  +V  + ++ G + GA+ ++ KPF+ + L   ++ + +  +
Sbjct: 63  EDLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122


>gi|299147431|ref|ZP_07040496.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298514709|gb|EFI38593.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1353

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++L+V+ +   R+          F + EA    E  E       P+ ++ D  M     
Sbjct: 1100 KTILIVEDNVEFRRFLVEQLIGQ-FNILEAGDGAEGEEVAI-HKSPDLIISDMMMPKVDG 1157

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            LE    ++     + + +  L   +  E  I   +AGA+S++ KPFN + L   +  L +
Sbjct: 1158 LEMCVRIKNNIQTSHIPIILLTARISDEARIESYKAGADSYISKPFNYDILLTRINMLLE 1217

Query: 120  MQKSKDE 126
             Q+ + E
Sbjct: 1218 QQEKRKE 1224


>gi|270296014|ref|ZP_06202214.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273418|gb|EFA19280.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1310

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            LLL +    +R+      +   + V       +A E   +E+ P+ ++ D  M      E
Sbjct: 1068 LLLAEDDADMREYLVDSLSSE-YKVVAVPDGGKALETA-REINPDIIISDIVMPVLEGDE 1125

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L    + E +I G  AGAN +++KPF+   L+  +R + Q +
Sbjct: 1126 LCRILKSSVETSHIPIILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1185

Query: 122  KSKDE 126
            +   E
Sbjct: 1186 QHLRE 1190


>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     +K     + +++D  M  +
Sbjct: 12  MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDI 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +++ V  L  + D +  ++G R GA+ +L KPF+   L   +  L +
Sbjct: 72  DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 130

Query: 120 M 120
            
Sbjct: 131 R 131


>gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 235

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A        +P+ +++D  +  
Sbjct: 1   MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVS-YVPDIVILDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  ++++   +++ +  +    +    I     GA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IEIIKKIRTWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|160885560|ref|ZP_02066563.1| hypothetical protein BACOVA_03562 [Bacteroides ovatus ATCC 8483]
 gi|156109182|gb|EDO10927.1| hypothetical protein BACOVA_03562 [Bacteroides ovatus ATCC 8483]
          Length = 1353

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++L+V+ +   R+          F + EA    E  E       P+ ++ D  M     
Sbjct: 1100 KTILIVEDNVEFRRFLVEQLIGQ-FNILEAGDGAEGEEVAI-HKSPDLIISDMMMPKVDG 1157

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            LE    ++     + + +  L   +  E  I   +AGA+S++ KPFN + L   +  L +
Sbjct: 1158 LEMCVRIKNNIQTSHIPIILLTARISDEARIESYKAGADSYISKPFNYDILLTRINMLLE 1217

Query: 120  MQKSKDE 126
             Q+ + E
Sbjct: 1218 QQEKRKE 1224


>gi|29349644|ref|NP_813147.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341554|gb|AAO79341.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1385

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++L+V+    +R   + LF +  + +  AT+  E  +   KE +P+ ++ D  M     
Sbjct: 1130 KTILIVEDHKDIRLYLKVLFGNE-YNLLMATNGQEGVDTAMKE-MPDLIICDVMMPVKDG 1187

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V++ P    +    L  +V+ + +I G + GA+ ++LKPF    L+  +  L  
Sbjct: 1188 FECCREVKENPETCSIPFIMLTAKVEDDDIIHGLQLGADDYVLKPFTPGILKAKVSSLIN 1247

Query: 120  MQKSKDEN 127
             +++  + 
Sbjct: 1248 GRQTLKQM 1255


>gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     +  G  V  A      R+   +    + +V+D  M G    
Sbjct: 6   RVLVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRAS-FDVIVLDLMMPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +   + + V  L    +    I G   GA+ ++ KPF+   L   ++ L +  K
Sbjct: 65  TLC-RNIREKSAIPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRSK 123

Query: 123 S 123
           S
Sbjct: 124 S 124


>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  + + ++      + G+    A+   EA          + +++D  M  + 
Sbjct: 1   MK-ILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTNPDTSLMILDVMMPNMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + + +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  GL-DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            ++  +++
Sbjct: 119 AENAVQDK 126


>gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1365

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +L+V+ +  +R+V         + + EA +  E  +   + LLP+ ++ D  M     + 
Sbjct: 1107 VLIVEDNEEIRQVISQSLEKT-YAINEAANGQEGWQKV-RSLLPDLVITDIMMPVEDGIT 1164

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +++Q      + V  L      E +I G ++G++ +L KPF+ E L   +R + + +
Sbjct: 1165 LLRNIKQNLETNHIPVLLLTARTAMESVIEGLQSGSDDYLTKPFHPEVLSLKIRNILESR 1224

Query: 122  K 122
            +
Sbjct: 1225 E 1225


>gi|307545329|ref|YP_003897808.1| response regulator receiver protein [Halomonas elongata DSM 2581]
 gi|307217353|emb|CBV42623.1| response regulator receiver protein [Halomonas elongata DSM 2581]
          Length = 123

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +      L    GF V  A     A    + E  P+ +++D S+ G  
Sbjct: 1   MARVLVVDDEPNIVLSLEFLMEQAGFEVTTAEDGETALRLID-EGAPDLVLLDISLPGIG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R  P    + +  L       +   G   GA+ ++ KPF+  TL   +R L 
Sbjct: 60  GFEVLERLRSDPAHRHLSIIMLTAHGREVEREKGLALGADDYITKPFSTRTLVEKVRALL 119


>gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L++D    + ++     +  G+ V       E           + +++D  M  +  
Sbjct: 8   QSILVIDDDLELTEMLSTYLSSMGYQVQVRNDGEEGLSEAVSGRHYDLILLDVMMPKMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++++ +     V  L    D    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 68  F-DVLKKLRVSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRH 126

Query: 122 KSKD 125
               
Sbjct: 127 NLSS 130


>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + ++  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ R+     G+ V  A    EA     +   P+ +++D  +     
Sbjct: 4   KKILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEA-TRLMQTESPDLVLLDIMLPKKDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R +   ++V +  L  +      + G   GA+ ++ KPF+   +   ++   +  
Sbjct: 63  FAVC-RDIRRVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRT 121

Query: 122 KSKD 125
           ++  
Sbjct: 122 QAAK 125


>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 250

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDESM 56
            +L+V+   ++R +      + G+ +  A     A E        E E   + LV+D  +
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                L+    +R    G  + +  L  +V     + G   GA+ +L KPF+   L    
Sbjct: 80  PQVNGLDICRLLR--YQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQ 121
           R L + Q
Sbjct: 138 RALLRRQ 144


>gi|218780373|ref|YP_002431691.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfatibacillum alkenivorans AK-01]
 gi|218761757|gb|ACL04223.1| Two-component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfatibacillum alkenivorans AK-01]
          Length = 463

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   LL+VD    +  + +     D   +V  A S  EA E   +E   + ++ D  M  
Sbjct: 1   MKRRLLIVDDEPDMLHLLKRSLEPDLNCVVETAASGLEAMEILGQE-RFDLILADIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       +      D  +  +      +  +   + GA  F+ KPF+ E L   + +  
Sbjct: 60  MDGLELLEKVQAQYPDQTMVMMTGHGSIDVAVQAIQKGAYDFVTKPFDHEALVVRLEKAL 119

Query: 119 QMQKSKDENQFL 130
           +  K   EN+ L
Sbjct: 120 ERSKLIAENRRL 131


>gi|330996468|ref|ZP_08320350.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
 gi|329573024|gb|EGG54643.1| response regulator receiver domain protein [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1328

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +L+V+    +R   +   +   F+V  A++  +A +   KE   + ++ D  M  +   E
Sbjct: 1056 ILIVEDEDSIRNFMKERLSPL-FIVETASNGKDALDTIRKEH-IDLVISDVMMPEMNGYE 1113

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++       + + +L  + D +  + G + GA +++ KPF+ + L+  +  L   +
Sbjct: 1114 LCTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLLNNR 1173

Query: 122  KSKDE 126
            + + E
Sbjct: 1174 QKERE 1178


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    + ++      + GF V       +A     ++      ++D  M  +  +
Sbjct: 9   TILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQL-RQKEFQLAILDWDMPLMSGY 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + +  +  + + E  +    AGA+ +L KPFN   L   +R L +   
Sbjct: 68  DVCQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNS 127

Query: 123 SKDENQFL 130
           +    + L
Sbjct: 128 NTSNKKAL 135


>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
 gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
          Length = 221

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++         + V       EA +F       + ++ D  M  V 
Sbjct: 1   MK-ILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEY-DLIITDIMMPNVD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R      +  V  L  +   E  I G  +GA+ +++KPF  + L   +R L + 
Sbjct: 59  GYEFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118


>gi|329963860|ref|ZP_08301202.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
 gi|328527113|gb|EGF54119.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
          Length = 1342

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
            +L++D +  +  + +   ++  + V  AT+  E  +  +KE  P+ ++ D  M G   +E
Sbjct: 1085 ILVIDDNAEILTLLQEALSE--YKVVTATNSEEGLDMLKKE-YPDLIITDVMMPGTDGIE 1141

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++Q      + +  L  +   E+ I G  +GA++++ KPFN   L+  +  L +  
Sbjct: 1142 LTRQIKQNKHTMHIPLVILSAKNTNEEKIEGLDSGADAYIGKPFNLNYLKAIVSRLIENY 1201

Query: 122  KSKDE 126
                E
Sbjct: 1202 SRIKE 1206


>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61
            +LLV+    + K  +   N   ++V  A +  EA E+ E +       + D  + G+  
Sbjct: 2   RVLLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLPGLSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + V  L      E  +AG  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRRS 121

Query: 122 KSKDENQF 129
                 Q 
Sbjct: 122 PQLQPEQL 129


>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 220

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R + +      G+ V EA    EA      E   + +V+D  +    
Sbjct: 1   MKKILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFY-EKPFDLVVLDIMLPKKD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++    + V V  +    +    + G   GA+ ++ KPF+ +     ++ + 
Sbjct: 60  GWSICREIKE---YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTIL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 KNK 119


>gi|256378007|ref|YP_003101667.1| multi-sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255922310|gb|ACU37821.1| multi-sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 1370

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++ D +  +R+    L    G+ V        A E       P+ +V D  M     L
Sbjct: 609 RVVVADDNADMREYLTRLLRSAGYRVRAVADGRAALEEVRA-RTPDLVVTDVMMPRLDGL 667

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R       V V  L      E  I G  AGA+ +L+KPF    L   +R   ++
Sbjct: 668 GLVAALRADQRTAGVPVVLLSARAGQEASIEGLAAGADDYLVKPFAAADLLARVRANVEL 727

Query: 121 QKSKDENQF 129
            + +D +  
Sbjct: 728 ARLRDHHAR 736


>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+ D +  +  + +      GF    A    EA +   K   P  L++D  M   
Sbjct: 1   MSKYILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNK-YSPLLLLLDVMMPKK 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +RQ    ++V +  +  + +    I G   GA+ +++KPF+   +   +R +
Sbjct: 60  DGFEVCREIRQN---SNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAI 116

Query: 118 PQMQKSKDEN 127
            +     DE+
Sbjct: 117 LRRVDISDED 126


>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
 gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   ++ K  R      G  V  A    EA     +E   N +++D  +  +  
Sbjct: 3   RKVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEAL-KLIRENKYNIILLDVMLPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VR+    +DV +  L  + +    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FQVCQQVRE---FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 MQKSKDENQ 128
             + + E +
Sbjct: 119 RTERQTEER 127


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D    +  + R      GF V  A    E          P+ +V+D  M G    
Sbjct: 4   KILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAA-WKPDLVVLDVLMPGTDGW 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G+ + +  L  + +    + G   GA+ +L+KPF  E L   +R L + 
Sbjct: 63  EVCRRLRA---GSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRR 119

Query: 121 QKSKD 125
            +  D
Sbjct: 120 SRQAD 124


>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    A S  EA    E      ++++D  M  + 
Sbjct: 1   MVDILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIE-NRNFKFILLDIMMRKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +        +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCKRIRS---FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVL 116

Query: 119 QMQKSKDENQ 128
           +      + Q
Sbjct: 117 RRTNQHAQIQ 126


>gi|331086531|ref|ZP_08335610.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410589|gb|EGG90017.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 223

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      G+ +  A     A    +    P+ +++D +M  + 
Sbjct: 1   MYKILVVDDDIDMITMVQDYLYLKGYEIMSAFDGEMALNKIK--FAPDIILLDVNMPQMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++   L +   + +L    + E  I G   G + ++LKPF+ + L   ++     
Sbjct: 59  GFEVCMKIRELVS-CPIIFLTAREEEEDRIKGLEIGGDDYILKPFSLKELEARIKAHLNR 117

Query: 121 QKSKDENQFLD 131
           ++   +   + 
Sbjct: 118 EERARKKSVIQ 128


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL++    + +V +      GF V  A+          +   P+ +++D ++ G+ 
Sbjct: 1   MSTVLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHK-PDLVLLDLNLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   +DV +  +   V+    + G   GA+ +++KP++   L   +R + + 
Sbjct: 60  GLDVA-REIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRR 118


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+ V  A +   A     +E+ P+ +V+D  +      
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L  +   E  +AG  AG + ++ KPF+ E +   +R L +   
Sbjct: 77  EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 123 SKDE 126
           + +E
Sbjct: 137 ASEE 140


>gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122]
 gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122]
          Length = 238

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D    + +V   L    G+ V  A    EA          +  ++D  M     L
Sbjct: 12  RILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR--HPFDLAILDVMMPKASGL 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     ++  + +L         +AG  AG + +L+KPF+   L   ++ + + 
Sbjct: 70  EVCERLRLS---SNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRR 126

Query: 121 QKS 123
            + 
Sbjct: 127 YRQ 129


>gi|256819065|ref|YP_003140344.1| two component transcriptional regulator, AraC family
           [Capnocytophaga ochracea DSM 7271]
 gi|256580648|gb|ACU91783.1| two component transcriptional regulator, AraC family
           [Capnocytophaga ochracea DSM 7271]
          Length = 934

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+ +  +R+  R++ +D  + + EA +  E  E  +K  LP+ ++ D  M      
Sbjct: 686 TVLIVEDNEDMRQFIRYILSD-DYNLIEAENGEEGFEVAKKH-LPDVVISDVMMPKTDGF 743

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    ++       + V  L      E+   G  +GA++++ KPFN + L+  +R+L + 
Sbjct: 744 DLCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLIEN 803

Query: 121 QKSKDE 126
           +K   E
Sbjct: 804 RKKIRE 809


>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
 gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
          Length = 235

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL---PNYLVIDESME 57
           M  +L++D    +  + +            A S  E  +  ++       + +++D  M 
Sbjct: 1   MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F   ++++   +++ V  L  + + E  + G R GA+ +L KPF+   L   +  L
Sbjct: 61  YMNGF-QVLKKIREVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119

Query: 118 PQM 120
            + 
Sbjct: 120 IRR 122


>gi|212691087|ref|ZP_03299215.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855]
 gi|212666319|gb|EEB26891.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855]
          Length = 1308

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +   R+       +  + VFEA++  EA E   ++ +   ++ D  M  +   
Sbjct: 1066 SVLVVEDNDDFRRFLVGCLKEH-YQVFEASNGKEALEILSQQSV-QMVISDVMMPVMDGL 1123

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 V+     + + V  L      E ++ G R GA+ ++ KPFN + L   +++L Q
Sbjct: 1124 ELCHAVKTDIRFSHIPVILLTARTAEEHVLGGLREGADDYITKPFNLDILLLRIQKLLQ 1182


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + K       D  ++V  A    +  +   +    + +++D  +  +   
Sbjct: 2   RILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWD-FIQSFSYDLIILDVMLPKLNGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L         + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 61  DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRR 118


>gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in
           phosphate regulation [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in
           phosphate regulation [Flavobacterium psychrophilum
           JIP02/86]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    V ++  +  +  G+ +F A +  EA +  +K   P+ +++D  M
Sbjct: 1   MKKKEIRILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHN-PHLIIMDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R++P   +V + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGMEACEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKV 119

Query: 115 RELPQMQKSKD 125
           + L +  K ++
Sbjct: 120 KALLRRIKEEE 130


>gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++ R      GF V EA     A    ++  LP  +V+D  M  +   
Sbjct: 6   TVLVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRG-LPALIVLDIMMPELDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++    ++ + +L    D    I G   G + +L KPF+   L   ++ + +  +
Sbjct: 65  AVC-REVRRKHELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRAR 123


>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
 gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
          Length = 242

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++ +       + V  A +  E ++   K    + +++D  + G   
Sbjct: 4   KHLLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKL-KTAQIDLIILDLMLPGEDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R +   +++ V  L    +    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 63  LTLC-RNLRAQSNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRR 120


>gi|78222609|ref|YP_384356.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Geobacter metallireducens GS-15]
 gi|78193864|gb|ABB31631.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter metallireducens GS-15]
          Length = 458

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+    L    G+ V +A    +A EF +     + ++ D  M G+   
Sbjct: 4   RILVVDDELSMREFLAILLKREGYAVDQADCAEKALEFLDSITY-DLVISDVKMPGLDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D  V  +      E+ +   + GA  ++ KPF  E ++  +R   + + 
Sbjct: 63  ALLGRIKENSPDTAVLMMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVRNALEKRD 122

Query: 123 SKDENQFL 130
            K ENQ L
Sbjct: 123 LKRENQRL 130


>gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 705

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR +   L  + G+    A S  +A    + E  P+ +++D  M G+  +
Sbjct: 7   TILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVD-ERAPDLILLDIMMPGMDGY 65

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L    +    ++G  AGA  +L KP     L   +R L ++
Sbjct: 66  EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|328952068|ref|YP_004369402.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobacca acetoxidans DSM 11109]
 gi|328452392|gb|AEB08221.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobacca acetoxidans DSM 11109]
          Length = 455

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD++L+VD       V   L    G+ VF A S   A E   +  L + +V D  M  + 
Sbjct: 1   MDTILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTRRNDL-DLVVTDMKMPRMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +   +  D+ V  +      EK +   + GA  ++LKPF  E +   + +  ++
Sbjct: 60  GIELLEQLKQVYPDLPVIMMTAYGTVEKAVEAMKKGAFDYILKPFKNEEILLTIAKALEL 119

Query: 121 QKSKDENQFL 130
           +    EN+ L
Sbjct: 120 RHLLTENRRL 129


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 59/139 (42%), Gaps = 10/139 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+  L+VD   ++ K  +       + V  A    EA +   KE   + +++D  +  + 
Sbjct: 2   MNKALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMA-KEKEYDIVLLDVMLPEMD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 61  GMEVCQAIRE---FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAII 117

Query: 119 QM----QKSKDENQFLDAI 133
           +      KS D+N+ +  I
Sbjct: 118 RRNSKKSKSVDKNERIIEI 136


>gi|262044459|ref|ZP_06017518.1| OmpR family transcriptional regulatory protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|330010607|ref|ZP_08306835.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|259038189|gb|EEW39401.1| OmpR family transcriptional regulatory protein [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|328534457|gb|EGF61050.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 252

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G+    A +   A     K    + +V+D  M G     
Sbjct: 13  ILVVDDDRDIRELIVDYLEKSGYRASGAANGK-AMWSVLKNHQIDLIVLDIMMPGEDGLT 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P   D+ V  L    D    I G   GA+ +L+KPF    L   ++ + +  
Sbjct: 72  LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 130

Query: 122 KSKDEN 127
           ++   N
Sbjct: 131 RALPPN 136


>gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +           G+         EA +  E E  P+ +++D ++     +
Sbjct: 5   KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLE-ESSPHLILLDINLPSENGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ   G  V V  L    D    +A  R GA+ ++ KPF    L   +  + + 
Sbjct: 64  GVLGTLRQ--SGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRR 121

Query: 121 QKSKD 125
             +++
Sbjct: 122 VGTQE 126


>gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 247

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD   +VR +     +  GF V    +   A +   +   P  +V+D  M  +  
Sbjct: 3   QTILIVDDDPVVRDLVSEYLHGRGFQVATLENGL-ALQRRLQRERPALVVLDIMMPELDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + +
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 122 KS 123
            S
Sbjct: 122 GS 123


>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
 gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V  A       +    E   +  ++D  + G+ 
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEE-FDMFILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R      +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICRQIR---DKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
 gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
          Length = 241

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 124 DALARDSRIDA 134


>gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis]
 gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 1202

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           +++L+VD +  +R+    +  + GF    A +  +     +    P+ +V D  M     
Sbjct: 845 NTVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQT-YHPDVIVTDLMMPQVSG 903

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE I  +R  P      +  L  + D +  I G   GA++++ KPFN   L   +R L  
Sbjct: 904 LELIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL-- 961

Query: 120 MQKSKDENQFLDAI 133
            Q  K E + +  +
Sbjct: 962 -QALKAEERRVAHL 974



 Score = 94.1 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       +    F+   F V +A S   A +  E+      ++ D+ M  +   
Sbjct: 11  TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQ 121
                      D     L    D E ++    +G    ++ KP+  + L+  +++  +  
Sbjct: 70  EFLSLTATQYPDSIRIILTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQGLETH 129

Query: 122 ---KSKDENQFLD 131
              KS+ E   L 
Sbjct: 130 NVLKSRTEELRLA 142


>gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
 gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
          Length = 241

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +      + G++V  A +  +  +   +    + LV+D  + G   
Sbjct: 8   TKILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     D+ +  L  + D    I G   GA+ ++ KPFN   L   ++ + +
Sbjct: 67  LSICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 124

Query: 120 MQ 121
            +
Sbjct: 125 RR 126


>gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1353

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E   +E +P+ ++ D  M
Sbjct: 1089 KRIEDAKMLIVEDNESIKQMLVSIFETF-YQVTTASDGEEALEKV-REEMPSIILSDVVM 1146

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1147 PRMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1206

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1207 NNLVNSRRLLQE 1218


>gi|254411539|ref|ZP_05025316.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182040|gb|EDX77027.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 505

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      +    +    G+ V +A S   A E   +   P+ +++D  M+ +   
Sbjct: 7   NILIVDDHPDNLRSLAAILISAGYKVRKAISGKMALETI-RSYPPDLILLDVKMQQMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++       + V +L    D E  +     G + +++KPF  + +   ++    +
Sbjct: 66  TVCSTLKANAATQRIPVIFLSALDDVEDKVKAFNVGGSDYIVKPFQAQEVLIRVKNNLMI 125

Query: 121 QKSKDEN 127
              + E 
Sbjct: 126 AHQRQEL 132


>gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  +      G+ V  A +  +A         P+ LV+D  +   +
Sbjct: 1   MKRILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNP-PDVLVLDLGLPD-I 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R +   +D+ +  L         +    AGA+ ++ KPF  + L   +R + + 
Sbjct: 59  EGADVIRGIRAWSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERR 118


>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 246

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE--FCEKELLPNYLVIDESMEG-- 58
            LL+V+    +R+         GF V   ++  EA        +   + +V+D  + G  
Sbjct: 17  RLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLG 76

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    +R   +     +  +         + G   GA+ +L+KPF    L    R L 
Sbjct: 77  GLDVCRQLRGNNIT--TPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALL 134

Query: 119 QMQKSKDEN 127
           +  + K + 
Sbjct: 135 RRTQQKPQQ 143


>gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
 gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
          Length = 457

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++     +   F V  A++  +A E C +    + +++D  M  +  F
Sbjct: 4   RVLVVDDIPANVRLLEARLSAEYFDVITASNGAQALETCARAEC-DIILLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 68.3 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    + +     +       EA     +      +V +       L 
Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAIDIEPDPSEALFRAAESNYDLLIVSLGLENFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +    D  +++ G   G N +LL P ++  L  
Sbjct: 216 LCSQARSLERTRHVPILAVADVDDNGRLLRGLEIGVNDYLLLPIDKNELLA 266


>gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
 gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
          Length = 264

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R+         GF V EA S   AR     E+ P+ +++D  M G   
Sbjct: 23  TSILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSAL-TEVSPDIVLLDIMMPGEDG 81

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  R +     + V +L    +    I G   GA+ +++KPF    L   +R + + 
Sbjct: 82  L-SLCRHLVETRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRR 139


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +  + + +     + V  A +  +  E  +K+ +P+ +++D  +    
Sbjct: 1   MAKILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQ-IPDLIILDVMLPDES 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++     V +  L  + D    + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 60  GF-DILKKIVPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRR 118

Query: 121 QKSKDENQ 128
            +    N+
Sbjct: 119 IEEVKANK 126


>gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
 gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
          Length = 254

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++ +VD    +R +        GF    A +  E  E  ++ +  + +V+D  + G+   
Sbjct: 6   TICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLE-IQRRVPCSLIVMDIMLPGMNGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +   + V V +L    D    I G   GA+ +L KPF    L   +R + +  +
Sbjct: 65  -ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTE 123


>gi|205372857|ref|ZP_03225666.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 227

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL++D    ++ +      + G+    A++   A E   +    + +++D  M G  
Sbjct: 1   MYRLLIIDDEEDMQHLIGLYIQNGGYETVFASNSESALEQMRRHE-IDLVLLDIMMPGKD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +       DV V +L  + +    + G + GA+ +++KPF+   L   +  + 
Sbjct: 60  GFQVCEEI---CSEYDVPVIFLSAKGEEWDKVKGLKLGADDYIVKPFSPGELLARIEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+    + +  +   +  G+ V  A           +E  P+  ++D  + G   +E
Sbjct: 5   ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLA-REAQPDLAILDWMLPGLTGIE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G  + V  L    +    + G  AGA+ +++KPF+ E L   +R   +  
Sbjct: 64  LCRRLRA--TGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRT 121

Query: 122 KSKDEN 127
           +  DE+
Sbjct: 122 QEVDED 127


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +  +      L    G+   +A    EA +  E+E + + +++D  M  +   
Sbjct: 5   KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENV-DLILLDVMMPRLNGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++     + + V  L  + +    ++G   GA+ ++ KP+N   L   ++   +  +
Sbjct: 64  SALMKLREK-SRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYR 122

Query: 123 S 123
           +
Sbjct: 123 A 123


>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
 gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     +K     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +++ V  L  + D +  ++G R GA+ +L KPF+   L   +  L +
Sbjct: 61  DGF-QVLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A+    A +   +++ P+ +++D  M G+  F
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKA-RDVRPDAVILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D    +L      +  IAG   G + ++ KPF+ E +   +R + +   
Sbjct: 73  GLLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTG 132

Query: 123 SKDEN 127
              E 
Sbjct: 133 RGAEE 137


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LLLV+    +      +    G +V  +     A +    +   + +++D  + G   L+
Sbjct: 3   LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQS-FDLVILDWMLPGHSGLD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               +R    G  V V  L      +  +AG  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LCRRLRA--GGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRP 119

Query: 121 -QKSKDENQF 129
            ++  DE + 
Sbjct: 120 PERQSDELRL 129


>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 247

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L++D    + ++     +  G+ V    +  E           + +++D  M  +  
Sbjct: 18  QSILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMPKMDG 77

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++++       V  L    D    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 78  F-DVLKKLRSSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRH 136

Query: 122 KSKD 125
               
Sbjct: 137 NLSS 140


>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
           9905]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|307592131|ref|YP_003899722.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306985776|gb|ADN17656.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 209

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD +    ++  ++  D G+ V +  +   A    +    P+ +++D +M      
Sbjct: 14  KILVVDDTIDSLRLMANMLTDQGYNVRKVLNGQMALTAAQSAP-PDLILLDINMPQLNGY 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P+  ++ V ++    +    +     GA  ++ KPF  E L   +    ++
Sbjct: 73  EVCQQLKNNPITAEIPVIFISALDEVLDKVKAFSVGAVDYITKPFYFEELVTRVETQLKL 132

Query: 121 QKSKDE 126
           +  + E
Sbjct: 133 RFLQKE 138


>gi|254881160|ref|ZP_05253870.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 4_3_47FAA]
 gi|254833953|gb|EET14262.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 4_3_47FAA]
          Length = 1357

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAMS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+ P    + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|255533889|ref|YP_003094261.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346873|gb|ACU06199.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 1374

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+LLV+    +R + R++  +  ++V+EA +  EA  F  K  LP+ ++ D  M  +  L
Sbjct: 1118 SILLVEDEPELRYLIRNVLKEQ-YVVYEAGTGVEALAFLYK-TLPDLIISDVMMPDMNGL 1175

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    V+Q P    +    L      +    G   GA++++ KPF    L   +R+L   
Sbjct: 1176 ELCRTVKQTPAMAQIPFVILSARGSEDNKAEGYELGADAYIPKPFQINYLLVRIRKLL-- 1233

Query: 121  QKSKDENQFLDAI 133
                D+   ++++
Sbjct: 1234 ----DDQARMESL 1242


>gi|218438991|ref|YP_002377320.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
 gi|218171719|gb|ACK70452.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7424]
          Length = 589

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R++   L     + V EA +  +  E      LP+ ++ D  M    
Sbjct: 1   MAKILVIEDELSIRELINELLTLAEYEVIEAENGSQGIELALT-TLPDLILCDIMMPYKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  ++  P    +   +L  +        G   GA+ +L KPF+ + L  A+    
Sbjct: 60  GYEVLQQLQSYPETESIPFIFLTAKGTKVDFREGMSLGADDYLAKPFSEDDLLQAINTRL 119

Query: 119 QMQKSKDENQFL 130
           + +++  E ++L
Sbjct: 120 K-KRASIEKRYL 130


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    +  + + +    G+ V  A       +  +K   P  L++D  M G+   
Sbjct: 4   RILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNP-PELLILDIMMPGLDGW 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R+      + +  L    + E  + G   GA+ +L+KPF  E L   ++ L + 
Sbjct: 63  EICRRFRRENF---IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRR 119

Query: 121 QKSKDE 126
           + +  +
Sbjct: 120 KTNSAK 125


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V  +    +A E        + +V+D  +  + 
Sbjct: 1   MTCVLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGG-IDLIVLDLGLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V  L   VD    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119

Query: 121 QKSK 124
            +S+
Sbjct: 120 GQSE 123


>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 273

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         GF V +A    EA E  +   + N +++D  M G+ 
Sbjct: 43  MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEV-NLMIVDVMMPGLD 101

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 102 GIRTTLKVRE-TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRR 160


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ +    +R + R      GF V EA     A     +E  P+  ++D  M G+  F 
Sbjct: 5   ILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTAL-VLAREHAPDMAILDIMMPGMNGFE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R +   +++ +  L  +      I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 64  LT-RALRKYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRR 119


>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
 gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
          Length = 230

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A       E        + L++D  + G   L
Sbjct: 2   RILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSE-FAAGGTYDLLILDWMLPGKTGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+   G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQELRRQ--GKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118

Query: 121 QKS 123
             S
Sbjct: 119 AGS 121


>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +  +        GF V  A     A     + L P+ +V+D  + G+   
Sbjct: 4   TILVVEDEEPILNLVVAYLKADGFAVHTARDGESAL-MLAQTLQPDLIVLDLLLPGMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++      +V  L    +    + G   GA+ +L KPF+   L   ++ + + ++
Sbjct: 63  -EICRRLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRR 121


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 3/118 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+ + + +   V       +G+ V  A +  EA +    E  P+ +++D  M  +   
Sbjct: 1229 RVLVAEDNEMNLMVLSEYLQAYGYEVCVARNGREALQVA-AEWRPDLIIMDIQMPELDGL 1287

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              I  +R         +  +              AGA  +L KP +   L   +  L 
Sbjct: 1288 EAIRQLRAQAAYATTPIIAVTALAMPGDREQCLLAGATDYLTKPISLRRLARHIERLL 1345



 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
            L+++SS +V +       +             A E     + P+ +V+   +      E 
Sbjct: 1100 LIIESSAVVAEQLARYLAEQNIQPVVWLYGNGAVEQVAA-MRPDLIVLSVEIPDRSGWEI 1158

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +A +++ P    + V  + +  + E    G  AGA ++L+KP NR  L+ A+ ++
Sbjct: 1159 LADLQRDPELRRIPVIVVSVVDEPE---RGFTAGAAAYLVKPINRAMLQQALSQI 1210


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + +         G+ V  A       E   K    + +++D  + G  
Sbjct: 1   MAKILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSD-IDLVLLDVMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R     + V +  L  + D    +AG   GA+ ++ KPF  E L   +R   
Sbjct: 60  GIEVCRRIRME---SQVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVAL 116

Query: 119 QMQ 121
              
Sbjct: 117 SRH 119


>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K         G+ V+ A    +A E   K + P+ +++D  +  +  
Sbjct: 8   KRILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARK-VKPDLMILDIMLPKMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    +    G  V    L    +    + G   GA+ +L+KPF    L   +R + + 
Sbjct: 67  FEVLAQLQSTG-GVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRR 124


>gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 268

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +  V    
Sbjct: 5   ILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKG-QALALQYTPDLILLDLMLPNVDGLT 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  +      +  + G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLLRR 122


>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
 gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
          Length = 236

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            ++L+VD    +R + R       +   EA ++ +A      +  P+ +++D  + G   
Sbjct: 4   RTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQ-RPDIVLLDWMLPGGSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E +  +++     ++ V  L  +   + +I G   GA+ ++ KPF    L   ++ L +
Sbjct: 63  IELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKALLR 122

Query: 120 MQ---KSKDENQFLD 131
                +S D  Q  +
Sbjct: 123 RSGVGESADRMQVSE 137


>gi|301310542|ref|ZP_07216481.1| response regulator DrrA [Bacteroides sp. 20_3]
 gi|300832116|gb|EFK62747.1| response regulator DrrA [Bacteroides sp. 20_3]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      G+ V  A S  EA +      + N L++D  M  +  
Sbjct: 4   TRILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK--DLTVYNLLLLDVMMGEISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ     +  + +L  +     M+ G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  FKMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLR 121

Query: 120 MQKSKDENQFLDAI 133
               K +++ ++ +
Sbjct: 122 RTSEKSKDKEIEKL 135


>gi|298387999|ref|ZP_06997547.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259265|gb|EFI02141.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1377

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            LL+++    +R+    LF    + V EA +  E     +K  +P  ++ D  M     F 
Sbjct: 1126 LLIIEDHDEMREYLCSLF-KEDYNVIEAGNGEEGVAMADK-YIPKLIISDIMMPVKDGFE 1183

Query: 64   --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R+      + V +L  + +    +   + G + +++KPFN E L+  ++ L + +
Sbjct: 1184 CSREIRENKRTFHIPVIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQR 1243

Query: 122  KSKDEN 127
                + 
Sbjct: 1244 DLLRKL 1249


>gi|256391218|ref|YP_003112782.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256357444|gb|ACU70941.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 236

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +    R   +  G+ V  A           +   P+ +V+D  +  + 
Sbjct: 1   MKRLLVVDDEAQLLVAVRINLSARGYEVSVAPDGTTGLAVAARRP-PDLVVLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T V +  L    +    +    AGA+ F+ KPF+ + L   +R L + 
Sbjct: 60  GV-QVIDGLRGWTTVPILVLSGRTESWDKVEALDAGADDFVTKPFDMDELAARVRSLLRR 118

Query: 121 QKSKD 125
            + ++
Sbjct: 119 AEPEN 123


>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
 gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
          Length = 1378

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ D +  +R+    L    G+ V       +A          + +V D  M  +    
Sbjct: 631 VLVADDNADMREYLIRLLLGAGYQVSAVDDGRQALGAIRT-KAFDLVVSDVMMPHLDGLA 689

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +R  P    V V  L      E  I G +AGA+ +L+KPF    L   +R   ++ 
Sbjct: 690 LVAALRADPRTASVPVLLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANIELA 749

Query: 122 KSKDENQF 129
           + +  +  
Sbjct: 750 RLRSHHAR 757


>gi|183597266|ref|ZP_02958759.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827]
 gi|188023581|gb|EDU61621.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQLDSSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ+       V  L         + G   GA+ +L KPFN   L   +R L + 
Sbjct: 61  ETLKELRQI---HQTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRR 117

Query: 121 QKSKDENQ 128
               ++NQ
Sbjct: 118 SNWSEQNQ 125


>gi|189424441|ref|YP_001951618.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
 gi|189420700|gb|ACD95098.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
          Length = 462

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R     +  D G+ V  A +  +A +   +E +P+ +++D  M G+  
Sbjct: 3   KLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLI-REEVPDLVLLDIWMPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +   L  D+ V  +      E  +   R GA  F+ KPF+ + +   +      +
Sbjct: 62  IQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFK 121

Query: 122 KSKDENQ--FLDAI 133
           + + EN+   L A+
Sbjct: 122 ELRKENEALRLSAL 135


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+    + +         G+ V  A    E       E   + L++D  +     
Sbjct: 3   KKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSEN-FDVLLLDVMLPSING 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     + V +  L         +AG  AGA+ +++KPF  E L   +R + +
Sbjct: 62  IEICRRIRTQ---SQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILR 118

Query: 120 MQKSKDEN 127
               +  N
Sbjct: 119 RVTPEQTN 126


>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
 gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    V  + +  F    F+V+ A     A +       P+ +++D +M G+   
Sbjct: 4   KLLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALKQAA--CHPDLVLLDINMPGMDGL 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                +R         + +L   ++    I G + GA+ +++KPF+ + L   +    + 
Sbjct: 62  TVCEKIRSH---ISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRR 118

Query: 120 --MQKSKDENQFLDAI 133
              ++ + E +F   +
Sbjct: 119 ENRKQGQSELRFFSEM 134


>gi|94986298|ref|YP_605662.1| response regulator receiver/SARP domain-containing protein
           [Deinococcus geothermalis DSM 11300]
 gi|94556579|gb|ABF46493.1| response regulator receiver and SARP domain protein [Deinococcus
           geothermalis DSM 11300]
          Length = 344

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + K+   +    G+ V  ++   EA +  +    P+ ++ D  M  + 
Sbjct: 1   MPRILVVDDDAAILKLISVILARAGYEVRTSSHPNEALDLLQV-FTPDLVISDVVMPYMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LEF+  VR     + +    L    + + +  G   GA+ +L KPF    L  A+    
Sbjct: 60  GLEFLERVRNHEKLSALPFILLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTTAVGARL 119

Query: 119 QMQKSKDENQ 128
           +        +
Sbjct: 120 RRAGLTRTQE 129


>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 252

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL--------PNYLVIDE 54
            +L+V+   ++R +      D G+ +   +    A    ++E           + LV+D 
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79

Query: 55  SME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            +     L+    +R    G  + +  L  +      + G   GA+ +L KPF+   L  
Sbjct: 80  MLPQVNGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137

Query: 113 AMRELPQMQK 122
             R L + QK
Sbjct: 138 RCRALIRRQK 147


>gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
 gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++ ++     G+ V  A    +A      +  P+ +++D  M G   +
Sbjct: 8   KVLVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAV-KVASKFHPDVILLDIMMPGQDGV 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+P   + F+ +L   ++    +A    GA+ ++ KP     L   +  L + 
Sbjct: 67  ETCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRR 126

Query: 121 QKSKDENQ 128
           +  K++ Q
Sbjct: 127 ELKKEQEQ 134


>gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +         + G+ V  A +  EA E  E     +  ++D  M  +    
Sbjct: 6   ILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATP-IDLAIVDVMMPKMDGIT 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++         V  L  + +    I G   GA+ ++ KPF    L   +    +  K
Sbjct: 65  FTMKLRE-HHHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYK 122


>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    ++  + +++D  M  +  F
Sbjct: 7   NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 241

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    +           G+ V  A     A E       P+ +V+D  + G+
Sbjct: 1   MKPKVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAA-WNPDLVVLDVMLPGL 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R    G    V +L  +   E+ + G R G + +L KPF+       ++ L
Sbjct: 60  NGLQVCRQMRAQ--GQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNL 117

Query: 118 PQMQ 121
            + +
Sbjct: 118 LRRR 121


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +         +  + VF+A +  EA E   +E   + ++ID  M  + 
Sbjct: 1   MYNILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEE-IHLVLIDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + V + +L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 60  GTKTTIKIRE-TSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRR 118

Query: 121 QKSKDEN 127
             +   N
Sbjct: 119 YTNYANN 125


>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
 gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G++  +A++  EA E  +   + + +++D  M  +   
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNV-HLIILDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++       + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120


>gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
 gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M  +L+++   I+R+   H F+  G+ V  A       E         + +++D  +  +
Sbjct: 1   MKKVLIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L    D +  + G   GA+ ++ KPF    L    + L
Sbjct: 61  DGWSICRRIRKS---SNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRL 117

Query: 118 PQMQKSKDENQFLD 131
            +     D NQ L 
Sbjct: 118 FK-----DTNQNLQ 126


>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 229

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RESKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 262

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRR 122


>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +   +  + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + K+ +      G+ VF+A    E  +F E E   + +++D  +  +   
Sbjct: 5   NILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENE-QIDLILLDLMIPKISG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   ++V V  +  +V  E +I G + GA+ ++ KPF+ + L   ++ + +  +
Sbjct: 63  EDLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122


>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
 gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+V+    +R       +   +  F A +  +A         P+ +++D  +  +
Sbjct: 2   MKVSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAM-ILATSHKPDIIILDLGLPDI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++++   ++  +  +    + +  I    +GA+ +L KPF+ + L   +R   +
Sbjct: 61  DGV-DIIKKIRAWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIR 119

Query: 120 M 120
            
Sbjct: 120 K 120


>gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
 gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
          Length = 1206

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           +++L+VD +  +R+    +  + GF    A +  +     +    P+ +V D  M     
Sbjct: 845 NTVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQT-YHPDVIVTDLMMPQVSG 903

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE I  +R  P      +  L  + D +  I G   GA++++ KPFN   L   +R L  
Sbjct: 904 LELIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL-- 961

Query: 120 MQKSKDENQFLDAI 133
            Q  K E + +  +
Sbjct: 962 -QALKAEERRVAHL 974



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       +    F+   F V +A S   A +  E+      ++ D+ M  +   
Sbjct: 11  TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQ 121
                      D     L    D E ++    +G    ++ KP+  + L+  +++  +  
Sbjct: 70  EFLSLTATQYPDSIRIILTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQGLETH 129

Query: 122 ---KSKDENQFLD 131
              KS+ E   L 
Sbjct: 130 NVLKSRTEELRLA 142


>gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36]
 gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36]
          Length = 288

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL+D    + ++     +   F V              +    + +++D  M  + 
Sbjct: 62  MTKLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAI-RGNQYDMVLLDVMMPKLN 120

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++ +  ++ V  L  + D    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 121 GF-EVLKKLRVDNNIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLRR 179

Query: 121 QK 122
            +
Sbjct: 180 IE 181


>gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R+V      +  F V  A    EA E   K    + +++D  M  +  
Sbjct: 5   KSILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKL-KNEAIDLIILDIMMPKLDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + +  L  + +    I G   GA+ +++KPFN   L   ++   +  
Sbjct: 64  IRTCLKIREE-KKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRT 122

Query: 122 KSKDENQ 128
            S +E +
Sbjct: 123 TSFNEPR 129


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A     A     +E  P+ +V+D  +  V  F
Sbjct: 21  RVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHA-REFRPDAIVLDVMLPDVDGF 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L      E  +AG  AG + ++ KPF+ E L   +R L +   
Sbjct: 80  EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139

Query: 123 SKDENQ 128
                +
Sbjct: 140 MAAAQR 145


>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 325

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++ ++        G+ V  A +   A    + E  P+ +V+D  +  +   
Sbjct: 84  RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMID-EFQPDAVVLDIMLPDMDGL 142

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                   +  D+ V +L  +   E  + G  AG + ++ KPF+ E L   +R L + 
Sbjct: 143 AVLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRR 200


>gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170]
 gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ VF A +  E     +K   P+ +++D  M
Sbjct: 1   MKKKDIKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKK-KQPHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R+     D  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKV 119

Query: 115 RELPQMQK 122
           + L +  +
Sbjct: 120 KALLRRFR 127


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A +  +A     KE  P+ +V+D  +      
Sbjct: 12  RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAA-KEFRPDAVVLDIMLPDFDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V +L      E  +AG  AG + ++ KPF+ E L   +R L +   
Sbjct: 71  EVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAG 130

Query: 123 SKD 125
           ++ 
Sbjct: 131 AQQ 133


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +      +  G+ V  A           ++  P+  ++D  + G+    
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLA-RDSSPDLAILDWMLPGLTGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G+ V V  L  + +    +AG  AGA+ +++KPF+ E L   +R   +  + 
Sbjct: 64  ICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123

Query: 124 KDEN 127
             E+
Sbjct: 124 TAED 127


>gi|298482580|ref|ZP_07000765.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
 gi|298271287|gb|EFI12863.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
          Length = 1322

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 10/141 (7%)

Query: 1    MD------SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54
            M       +LL+V+    +R   R  F    + V +     EA   C     P+ ++ D 
Sbjct: 1044 MKDPDDRNTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDV 1101

Query: 55   SMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             M G    E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+ 
Sbjct: 1102 MMPGIRGDELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKL 1161

Query: 113  AMRELPQMQKSKDENQFLDAI 133
             ++ L   +  + +     AI
Sbjct: 1162 KVQGLIDNRNRQRQFFMRQAI 1182


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+    +      L    GF      +  +A    E+E  P+ +++D  + G+ 
Sbjct: 1   MTKILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFERED-PDLVLLDVMLPGMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R       V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GMEVCKKIRASSS---VPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVL 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +  +      + GF VF+  +  +A    + E L +  ++D  +  +
Sbjct: 1   MQDKILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENL-DLAILDVMLPDM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+        V  L  + +    I G   GA+ ++ KPF    +   ++  
Sbjct: 60  NGFELCQKIREKYQY---PVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQ 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LRRYK 121


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + K  + + ++ G+ V  +       E        + +++D  +  + 
Sbjct: 1   MAKILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPY-DLIILDIMLPEIN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               + H+R+  +     V  +  + + +  I G  +GA+ +L KPF+   L   ++ + 
Sbjct: 60  GYNILKHIRENKIL--TPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAIL 117

Query: 119 QMQKSKDEN 127
           +   S+ E 
Sbjct: 118 RRTFSQYEQ 126


>gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 244

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +R+         GF V +A S  EAR     + + + +V D  M G  
Sbjct: 6   MPRILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSV-DLVVSDIMMPGED 64

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 H+R+    + + V  L    +  + I G   GA+ +++KPFN   L   +R + 
Sbjct: 65  GLSLTRHLRE---TSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVL 121

Query: 119 QMQKSKDENQFLDA 132
           +   ++   + LDA
Sbjct: 122 RR--TQQNGRSLDA 133


>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 239

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
 gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    + ++      + G+ VF+AT+  +A     +E   + +++D  M G+ 
Sbjct: 1   MFNVLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEK-IHLVILDIMMPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  +  +      I G   GA+ +++KPF+   L   ++   + 
Sbjct: 60  GLQVCMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRR 118

Query: 121 QKSKDEN 127
               +EN
Sbjct: 119 YVYLNEN 125


>gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    + +  R + +  G+ +  A +     +        + L++D  +     L
Sbjct: 2   RILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGY-DLLILDWMLPYLSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G    V +L  +   +  + G   GA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQQLRSQ--GKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRR 118

Query: 121 QKSKDEN---QFLDA 132
             + + N   + L A
Sbjct: 119 SPTFEANISQERLKA 133


>gi|27378817|ref|NP_770346.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351966|dbj|BAC48971.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 273

 Score =  138 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+V+     R +      +  F V  A +  E  +    +   + +V+D  + G   
Sbjct: 40  QSILIVEDDQETRNLVARYLRENSFNVGMAANGRE-MDRYISQNRVDLIVLDLMLPGEDG 98

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     T   +  L  + D    I G   GA+ +L KPFN   L   +  + +
Sbjct: 99  LSLCRRLRVD---TTTPIIILTAKGDDVDRILGLEMGADDYLPKPFNPRELLARINAVLR 155

Query: 120 MQ 121
            Q
Sbjct: 156 RQ 157


>gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 234

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +++V+    +R+         G+ VF+A +  E     E+E   +  ++D  M  +
Sbjct: 1   MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREK-IDLAIVDIMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +  V  L  + +    + G   GA+ ++ KPF    L   +    +
Sbjct: 60  DGITMTMRLREKY-EFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLR 118

Query: 120 MQKSKDE 126
                 E
Sbjct: 119 RYNRFQE 125


>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 232

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD   ++ K  R      G  V  A    EA +        + +++D  +     
Sbjct: 3   KKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHY-DMILLDVMLPKLDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    + V +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQSIRE---FSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
          Length = 239

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 500

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L VD      K+ + + +  G+ V  A +   A E  + + + + +++D  M G+    
Sbjct: 8   ILCVDDEPQNLKLLQAILSPRGYEVLVAQNGFLALEILKNQNV-DIVLLDVMMPGMDGYE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + V  +      E  I G  AG   FL KPF+   +   +  L +++
Sbjct: 67  VCRKIKEDETLRHIPVIMITALTAKEDRIRGIEAGTEEFLSKPFDVGEVLARINMLLRVK 126

Query: 122 KSKDENQ 128
              D+ +
Sbjct: 127 ALNDKLR 133


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +R+       +  + V  A    E  +   +    + +V+D  + G    
Sbjct: 13  RVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEY-DVIVLDVMLPGLSGW 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF+  +R         V  L      +  + G   GA+ +L KPF+ E L   +R L + 
Sbjct: 72  EFLQKLR---PTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRR 128

Query: 121 QKSKDE 126
              + +
Sbjct: 129 AAGQPQ 134


>gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 228

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R V      + G  V EA    EA +   ++ + + +++D  M  + 
Sbjct: 1   MGVILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEV-DLVILDVMMPRMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 H+R+      V +  L  +      I G   GA+ ++ KPFN   L   ++   
Sbjct: 60  GIKACMHIREQYS---VPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQL 116

Query: 119 QMQKSKDENQ 128
           + QK     +
Sbjct: 117 RRQKMLTSKE 126


>gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
 gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
          Length = 229

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  GF V EA                + +++D  M  + 
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAV--NSDIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDEN 127
                +N
Sbjct: 118 TSHTQKN 124


>gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
          Length = 1156

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD +  +R     +    G+ V+ A +  E      +EL+PN +V D  M     L
Sbjct: 799 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKV-QELVPNLIVTDLMMPLVTGL 857

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R         +  L  +VD E  I     GA+++L KPFN   L   +R L  +
Sbjct: 858 EMIRMIRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 917

Query: 121 QKSKDENQFLD 131
           +++  E + L+
Sbjct: 918 KEN--EKRVLE 926



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       +    F    + V  A S   A +   +E     ++ D+ M  +   
Sbjct: 10  KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118
                      D+    L    D E ++    AG    ++ KP+  E L+  +R+  
Sbjct: 69  EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125


>gi|39996422|ref|NP_952373.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983302|gb|AAR34696.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
          Length = 460

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+V  +   + G+ V  A S  E     + E  P  +V D  M G+  F
Sbjct: 9   RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFD-ERSPALVVTDLKMPGMGGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++      D  V  +      E  +   +AGA  ++ KPFNR+ L+  +++  +M
Sbjct: 68  RLLQEIKGRS--PDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 125

Query: 121 QKSKDENQFL-DAI 133
                EN+ L +A+
Sbjct: 126 LGLSRENRRLREAL 139


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V +A    +  E  E+E   + +++D  +  +  
Sbjct: 4   KKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERET-FDLIILDIMLPYMNG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +R++   ++V +  L  + +    + G   GAN ++ KPF  E L   +R   + +
Sbjct: 63  -IEVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTK 121

Query: 122 K 122
            
Sbjct: 122 N 122


>gi|256419739|ref|YP_003120392.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256034647|gb|ACU58191.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 229

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ +      GF +  A    E      +E  P+ +V+D  M  + 
Sbjct: 1   MSKVLLIEDEWQLGQIVKDSLEMRGFEMLYAADGKEGL-RLYQEHQPDVVVLDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F        L     + +L  +     ++ G   G N +L KPF+ + L   ++ L + 
Sbjct: 60  GFTVTTEIRKLDKTTPIIFLTAKSQTTDVVKGFELGGNDYLKKPFSMDELIVRIKALLER 119


>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
 gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
          Length = 243

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 11  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 70  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 126


>gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides
            finegoldii DSM 17565]
 gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides
            finegoldii DSM 17565]
          Length = 1358

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  P+ ++ D  M     
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PDLIISDIMMPKVDG 1163

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1224 QQERRKQE 1231


>gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3]
 gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 241

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G  + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 66  SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124


>gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 259

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L +  
Sbjct: 64  LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123

Query: 122 -----KSKDENQFLD 131
                 + ++N+ L 
Sbjct: 124 DRAPLGASNQNEILS 138


>gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R + R      G+ + EA    +A E C K+   + +++D  M  + 
Sbjct: 1   MSKLLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKD-QFDLIIMDIMMPNLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + V+++       V  L    +    I G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GF-SAVKKIREEASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILKR 118

Query: 121 QKSKDENQ 128
              +++ +
Sbjct: 119 VHGEEDKK 126


>gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 1066

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           +++L+VD +  +R+    +  + GF    A +  +     +    P+ +V D  M     
Sbjct: 845 NTVLVVDDNPDLRRYVSMMLQNAGFNAVLAKNGADGFNKAQT-YHPDVIVTDLMMPQVSG 903

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE I  +R  P      +  L  + D +  I G   GA++++ KPFN   L   +R L  
Sbjct: 904 LELIRMIRSSPELRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELIAEVRNL-- 961

Query: 120 MQKSKDENQFLDAI 133
            Q  K E + +  +
Sbjct: 962 -QALKAEERRVAHL 974



 Score = 93.7 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       +    F+   F V +A S   A +  E+      ++ D+ M  +   
Sbjct: 11  TILVVDDEPDNLDLLYRTFHRE-FKVLKAESGPAALKILEEVGEVAVIISDQRMPYMSGT 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQ 121
                      D     L    D E ++    +G    ++ KP+  + L+  +++  +  
Sbjct: 70  EFLSLTATQYPDSIRIILTGYTDVEDLVEAINSGKVFKYVTKPWKSDELKAIVQQGLETH 129

Query: 122 ---KSKDENQFLD 131
              KS+ E   L 
Sbjct: 130 NVLKSRTEELRLA 142


>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 228

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
 gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
          Length = 228

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +LLV+    +R++      + GF V EA +  +       +   + +V+D  +  +  
Sbjct: 3   NRVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHC-DLVVLDIMLPDISG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ+   T + V  L    D    I G   GA+ ++ KP N   L   ++ L + 
Sbjct: 62  L-EVLRQLRAKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRR 119


>gi|319654045|ref|ZP_08008137.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394238|gb|EFV74984.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 226

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    +  +        G+   + +S  +A  + E   + + +++D  M  + 
Sbjct: 1   MKTILLVDDETRMLDLLALYLMPLGYYCVKKSSAIDAILYVESHSV-DLILLDVMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            + A  +++    D+ +  L    +   ++ G + GA+ ++LKPF+ E L   +  + + 
Sbjct: 60  GWTAC-KEIKKFRDIPIIMLTARSEKPDIVKGLKMGADDYILKPFDEEELLARIEAVLRR 118

Query: 121 QKSKD 125
            +S +
Sbjct: 119 TQSSE 123


>gi|317480636|ref|ZP_07939723.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316903143|gb|EFV25010.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 1310

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            LLL +    +R+      +   + V       +A E   +E+ P+ ++ D  M      E
Sbjct: 1068 LLLAEDDADMREYLVDSLSSE-YKVVAVPDGGKALETA-REINPDIIISDIVMPVLEGDE 1125

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L    + E +I G  AGAN +++KPF+   L+  +R + Q +
Sbjct: 1126 LCRILKSSVDTSHIPIILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1185

Query: 122  KSKDE 126
            +   E
Sbjct: 1186 QHLRE 1190


>gi|261868867|gb|ACY02044.1| two-component system sensor histidine kinase/response regulator
            [Flammeovirga yaeyamensis]
          Length = 1385

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 5/129 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L++D +  +R++ + L  D  + V+ A +     +  +K ++PN ++ D  M  +   
Sbjct: 1129 KILVIDDNFSIREMMKDLLKDT-YDVYLADNGKNGLDLAKK-IMPNLIISDIMMPEMDGY 1186

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+      + +  L  +   E  + G   G ++++ KPFN E L   +  L + 
Sbjct: 1187 ELTQRIREDNHICHLPIILLTAKKSEESKLKGYEYGVDAYVTKPFNSEVLLARILTLIEN 1246

Query: 121  QKSKDENQF 129
            +K++ +N+F
Sbjct: 1247 RKNQ-QNRF 1254


>gi|218130333|ref|ZP_03459137.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697]
 gi|217987512|gb|EEC53841.1| hypothetical protein BACEGG_01921 [Bacteroides eggerthii DSM 20697]
          Length = 1331

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +F   G+ +    +  EA     +E  P+ ++ D  M  +  
Sbjct: 1079 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEAL-IIIREFNPDLVISDIMMPEMTG 1136

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G + GA+++++KPF+   L+  ++ +  
Sbjct: 1137 DELCSIIKGNLEVSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILA 1196

Query: 120  MQKSKD 125
             +    
Sbjct: 1197 NRALLR 1202


>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
 gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
          Length = 224

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++        GF   EA    EA        + + +V+D  M  + 
Sbjct: 1   MTTILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPV-DLVVLDIMMPTMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     ++ +  L    +  + + G   G + +L KPF+   L   ++ L 
Sbjct: 60  GWTLCKELRR--ANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 265

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V +A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKG-QALALQYAPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    + + +  +      +  + G  +GA+ ++ KPF+ E L+  ++ L +  
Sbjct: 64  LCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRT 123

Query: 122 K-----SKDENQFLD 131
                 S ++ + LD
Sbjct: 124 NRAPLGSNNQQEILD 138


>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 239

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R     + + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|163788047|ref|ZP_02182493.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
 gi|159876367|gb|EDP70425.1| transcriptional regulator [Flavobacteriales bacterium ALC-1]
          Length = 350

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL++   I+R+    L     + V  A +     +    E +P+ ++ D  M    
Sbjct: 1   MKKVLLIEDDAILRENTAELLELSDYDVVTAANGKLGVDKAI-ETMPDIIISDIMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +        +   +L  + + + +  G   GA+ ++ KPF+ + L  A+    
Sbjct: 60  GYGVLEALSSNDNTKHIPFIFLSAKTERQDVRKGMNLGADDYITKPFSEDELISAIESRI 119

Query: 119 QMQKSKDENQ 128
                  E +
Sbjct: 120 AKAAILKEER 129


>gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
 gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
          Length = 229

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  GF V EA                + +++D  M  + 
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAI--NDKIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDEN 127
             S  +N
Sbjct: 118 TSSTQKN 124


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R+     G+ V       +A     KE LP+ +V+D  + G   +
Sbjct: 4   RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRM-KERLPDLVVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKD 125
              + 
Sbjct: 123 AAPER 127


>gi|163845631|ref|YP_001633675.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222523334|ref|YP_002567804.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163666920|gb|ABY33286.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222447213|gb|ACM51479.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 313

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L  D    +R +        GF V  A           +E LP+ +++D  + G    
Sbjct: 9   TVLFADDDPHIRTLLSDTLTQAGFAVLAAEDGLS-LIRIAQEQLPDIILVDLMLPGVDGY 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R       + +  +    +   ++ G   GA+ ++ KPFN   L   +R L + 
Sbjct: 68  EAIRQLRNDTRTAHLPIIIVTARANPSDVVIGFDTGADDYITKPFNEAELVARIRSLLRR 127


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF V  A     A     +E  P+ +V+D  +  +  F
Sbjct: 9   KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEA-QESRPDLIVLDVMLPDMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V +L    D    I G   G + ++ KPF  E +   +R + +   
Sbjct: 68  TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 127

Query: 123 SKDENQFL 130
             +E   L
Sbjct: 128 GGEEEDAL 135


>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
 gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
          Length = 229

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 237

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +  + +      G+ V++A    E       E   + +++D  +  +L  
Sbjct: 5   KILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAED-IDLVILDLMLPKMLGE 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       V V  L  +V+    + G R GA+ ++ KPF+   L   ++ + + 
Sbjct: 64  DVMKEIRNRSE---VPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRR 120

Query: 121 QK 122
            +
Sbjct: 121 IE 122


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA    + E   + +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEK-FDLILMDIMMPKIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   T+  + +L  + + +  I G  +G + ++ KPF+   L   M  + +   
Sbjct: 63  -EAIKVIRKFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSN 121

Query: 123 SKD 125
            ++
Sbjct: 122 VRE 124


>gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
 gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+  +      G+ VF A    E  E  EKE   +  ++D  M  + 
Sbjct: 3   MNHILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKED-IHLAIVDIMMPRMD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 62  GIRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRR 120

Query: 121 QK 122
            +
Sbjct: 121 YR 122


>gi|329960128|ref|ZP_08298592.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
 gi|328533080|gb|EGF59853.1| response regulator receiver domain protein [Bacteroides fluxus YIT
            12057]
          Length = 1343

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R+  R+  ++  + +   ++   A     KE LPN ++ D  M  +   
Sbjct: 1082 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALTIA-KEYLPNLIISDIMMPEMRGD 1139

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L      + +I G   GA+ +++KPFN   LR  +  L   
Sbjct: 1140 ELCKALKNDIETSHIPIILLTALNTDKNIIEGLETGADEYIVKPFNIGILRATIANLLNN 1199

Query: 121  QKSKD 125
            +    
Sbjct: 1200 RALLR 1204


>gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 7169]
          Length = 230

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--- 59
            +L+V+    + ++     +   F V +A     A      E  P+ +++D  M      
Sbjct: 4   KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEK-PDLILLDWMMPHGESG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++F   +++ P   D+ +  L  + + +  + G  AG + ++ KPF+   L   +R + +
Sbjct: 63  IDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAVLR 122

Query: 120 MQKSKDENQFLDA 132
                   + + A
Sbjct: 123 RTGIDMGKELMQA 135


>gi|254785465|ref|YP_003072894.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685667|gb|ACR12931.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 120

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        G  V EA+   EA    + E   + ++ D +M  + 
Sbjct: 1   MAKILAVDDSASMRQMVSFTLKGAGHQVCEASDGVEALSLAKAESGVDLVISDINMPNMD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +RQ+P      +  L  E   +K   G  AGA  +++KPFN + L   + ++ 
Sbjct: 61  GISLIKELRQLPEYKFTPILMLTTESGVDKKSEGKAAGATGWIVKPFNPDQLLATIGKVL 120


>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
 gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
          Length = 239

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +    +  F   G+ VF A +  EA     KE   + +++D  M  + 
Sbjct: 8   MYNILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEE-IHLILMDVMMPVMD 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  VR++   + + V  L  + +    + G   GA+ ++ KPFN   L    +   + 
Sbjct: 67  G-IQTVRKLREDSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRR 125


>gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas
           fluorescens SBW25]
 gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas
           fluorescens SBW25]
          Length = 1243

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD S  +      L +D  ++V  A    +A    ++    + ++ D  M      
Sbjct: 838 RVLVVDDSPEMLSYLSELLHD-DYIVATAADGEQAWALLQRRP-IDVVLSDVMMPELDGF 895

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++       + V  L      E  ++G  +GA+ ++ KPF+   L+  +R   +M
Sbjct: 896 GLTARIKASAGFAHLPVILLTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAALRM 955

Query: 121 QKSKDENQ 128
            + + E Q
Sbjct: 956 SQVQTELQ 963


>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA +   +E  P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRVFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMA 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 223

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 228

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 7/130 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E E   + +++D  +  +
Sbjct: 1   MKRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD    + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWTVCRRIRKK---SNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQKSKDEN 127
            + + S   N
Sbjct: 117 MESRYSSAAN 126


>gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 246

 Score =  138 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +  + +      G+ V  A           +   P+ +V+D ++     +
Sbjct: 10  RILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDFSGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    +  L    D    +    AG + +L+KPF+ E L   +R + + 
Sbjct: 70  DICQRIR--SSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRR 127


>gi|237723313|ref|ZP_04553794.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447835|gb|EEO53626.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1337

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  ++V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1072 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1129

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1130 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1189

Query: 120  MQKSKD 125
             +    
Sbjct: 1190 NRALLR 1195


>gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621]
 gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 223

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA E  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    + ++     ++ G+   +A    EA          + L++D  M  +   
Sbjct: 2   KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDGM 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L +  K
Sbjct: 62  -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 123 SK 124
            +
Sbjct: 121 MQ 122


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD   ++ K  R         V  A    EA E  +++   + +++D  +     
Sbjct: 3   RKVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEY-DMILLDVMLPKYDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     +DV V  L  + +    I G   GA+ ++ KPFN   ++  M+ + +
Sbjct: 62  FEVCRQIR---DFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMR 118

Query: 120 MQKSKD 125
               KD
Sbjct: 119 RVAKKD 124


>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    R      G+ V  A S  EA         P+ +V+D  M  V   
Sbjct: 4   RVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASP-PDLMVLDIMMPDVDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    +  L         + G   GA+ +L+KPF  E L   +R L + 
Sbjct: 63  EVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRR 120


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +++VD    +  + +      GF+V  A       +  EK+     +V+D  +  +
Sbjct: 1   MKDKIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDA-ALIVLDLMLPEL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R      +  +  L  + D    + G   GA+ +L KPF+   +   ++ + +
Sbjct: 60  DGLEVCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILR 119

Query: 120 MQKSK 124
               +
Sbjct: 120 RMNQQ 124


>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
 gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  GF V EA                + +++D  M  + 
Sbjct: 1   MANILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAV--NDKIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDEN 127
             S  +N
Sbjct: 118 TSSTQKN 124


>gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
 gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
          Length = 238

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD    +R +        G+ V  A    E       +   + +V+D  + G     
Sbjct: 7   LLIVDDDREIRDLLTRYLARHGYRVTAAKDGQE-MRRYLADRNIDLVVLDLMLPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         V  L    +    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 66  LCRAIRADGG---PPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRRV 122

Query: 122 K 122
           +
Sbjct: 123 Q 123


>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
 gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
          Length = 792

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+   +V +  + L  D  + V  AT    A E  E     + ++ D  +  +   
Sbjct: 2   RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEA-FEYDLILSDVMLPRLDGV 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G  + +  L  +        G  AGA+ +++KPF+ E L   +R L + 
Sbjct: 61  GLCQQLRSQ--GYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 GEA 121



 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++VD    + +    L   +G  V       +  E       P+ L++D  M   G +
Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETL-TNSPPDLLLLDVEMPEIGGI 547

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR       + + +L    + + +     +GA+ F+ KP     L   +    + 
Sbjct: 548 DLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607

Query: 121 QKSKDENQFLDAI 133
            + +     +D +
Sbjct: 608 TRLQRRLSTIDPL 620


>gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419]
 gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase
           [Sinorhizobium medicae WSM419]
          Length = 455

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CE+  + + +++D  M  +  F
Sbjct: 4   RILVVDDVPANVKLLEARLVAEYFEVLTAADGHAALAICEQTSV-DLVLLDIMMPHMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKASSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLVRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KNVSDELRLRA 133



 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
           S+LLVD     ++            V   +    A      E   + ++++ + +     
Sbjct: 155 SVLLVDGRASSQERLTRALRPI-ADVAVLSDAQAALFEA-AENSFDLVIVNANFDDYDPL 212

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +     + +  +  + + E ++     G   ++++P +   L      L Q+
Sbjct: 213 RLCSQLRSLERTRFIPILLVTEQGNDEMIVRALELGVTDYIMRPVDPNELVAR--SLTQI 270

Query: 121 QKSKDENQFLDAI 133
           ++    ++   ++
Sbjct: 271 RRKHCNDRLRASV 283


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+ V  A S   A     +E+ P+ +V+D  +      
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L  +   E  +AG  AG + ++ KPF+ E +   +R L +   
Sbjct: 77  EVMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 123 SKDE 126
           + +E
Sbjct: 137 ASEE 140


>gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
 gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
          Length = 231

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    +R     + +   + V EA    EA E       P+ +++D  +  +   I
Sbjct: 7   VLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELF-TSRCPDLILLDLGLPDMDG-I 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++ +   + + +  +       + +     GA+ ++ KPF    L   +R   + Q+
Sbjct: 65  EVLKTIRGWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAMRHQQ 123


>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RESKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|256395907|ref|YP_003117471.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362133|gb|ACU75630.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 230

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R       + V    +  +A     +  LP+ +++D  +  + 
Sbjct: 1   MTRILVVDDEPQILRALRINLKSRTYDVETVANGVDALASAAR-RLPDAVLLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T V +  L    D ++ I    AGA+ F+ KPF  E L   +R + + 
Sbjct: 60  GVEVIL-GLRGWTTVPIVVLSGRTDPQEKIHALDAGADDFVTKPFAMEELLARLRAVIRR 118

Query: 121 QKSKD 125
            +  +
Sbjct: 119 HQQAN 123


>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    +  + +      G+ V  A          E     + +++D  M G+   
Sbjct: 4   NILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNH-FDLVILDVMMPGLDGW 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L    + E  + G   GA+ +L+KPF    L   +R L + 
Sbjct: 63  QVCGQIRE---YYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRR 119

Query: 121 QKSKDEN 127
               +  
Sbjct: 120 SGKTEAQ 126


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + +   +     GF      +  +A     K    +  V+D  + G+   
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSY-DLFVLDIMLPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     T V V +L         + G   G + +L KPF    L   +R L + 
Sbjct: 66  ELCRRLRSK---TTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122


>gi|218246417|ref|YP_002371788.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257059460|ref|YP_003137348.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218166895|gb|ACK65632.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256589626|gb|ACV00513.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 216

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + LLL+D    +  + +      G+ V  A +  EA E      +P+ ++ D  M  +  
Sbjct: 10  NRLLLIDDDPNLILLVKDYLEFQGYEVTTAENGREALEIL-ANQVPDMIICDVMMPEMDG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ    + + V +L  +   +  + G   GA+ +++KPF  E L   +     
Sbjct: 69  YAFVEKVRQDRRLSWIPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELAAQVESSLS 128

Query: 120 MQKSKDENQ 128
             +   E++
Sbjct: 129 QARRLMEHK 137


>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
 gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + +F+     +A E  +K    +  ++D  M  +  F
Sbjct: 4   NILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHY-DLAILDVMMPDLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + ++++       V  L  + +    I G   GA+ +L KPFN   L   ++   +   
Sbjct: 63  -SLLKKIRKHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYL 121

Query: 123 SKDEN 127
             ++N
Sbjct: 122 RYNQN 126


>gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1354

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R        D  F   EA +  EA E  +   + + ++ D  M  +   
Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEV-DIIITDVMMPVMDGI 1162

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + D +  + G + GA+ ++ KPF    +   ++ + + 
Sbjct: 1163 KLCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMRT 1222

Query: 121  QK 122
            ++
Sbjct: 1223 RR 1224


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++     R+    +    GF V  ATS  +  E   +    + +++D  M G  
Sbjct: 1   MTRVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGA-DIVLLDLMMPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ     +V +  +         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRQRG---NVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVT 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R+  +   +  G+   EA S  EA +  EKE  P   ++D  + G+  
Sbjct: 6   KKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKE-RPALAILDIMLPGMSG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +         +  +  +      I G   GA+ +++KPFN + L   +R L + 
Sbjct: 65  YEVCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRR 123


>gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
 gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
          Length = 1354

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R        D  F   EA +  EA E  +   + + ++ D  M  +   
Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEV-DIIITDVMMPVMDGI 1162

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +V+Q      + V  L  + D +  + G + GA+ ++ KPF    +   ++ + + 
Sbjct: 1163 KLCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMRT 1222

Query: 121  QK 122
            ++
Sbjct: 1223 RR 1224


>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +  F
Sbjct: 4   KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD--IDIILLDIMMPNIDGF 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         + +L         I G   G + +++KPF+ + L+  ++   + 
Sbjct: 62  QVCQKIR---DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118

Query: 121 QKSKDENQF 129
           +K    N  
Sbjct: 119 EKRIPLNNR 127


>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    +R++        G  V  A +  +A E       P+ +V+D  M  +  F
Sbjct: 11  KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASE-PDVVVLDVMMPELDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     ++V +  L    D    I G + GA+ +++KPF+ + L   +R + +   
Sbjct: 70  AVTERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVS 128

Query: 123 SKDEN 127
           S   N
Sbjct: 129 SVQAN 133


>gi|320354603|ref|YP_004195942.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfobulbus propionicus DSM 2032]
 gi|320123105|gb|ADW18651.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfobulbus propionicus DSM 2032]
          Length = 378

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V  +L     + V    S  +A     +E  P+ +++D  M G+  F 
Sbjct: 6   VLVVDDEPTNLAVLANLLRPL-YTVRACKSGEQALAAAIREPRPDLILLDVMMPGMDGFS 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +RQ     D+ V ++    D      G R GA  ++ KP     +   ++   +++
Sbjct: 65  VLHRLRQHEHSRDIPVIFVTALSDELDEEHGLRLGAVDYITKPIKPAVVLSRVQVHVEVK 124

Query: 122 KSKDENQ 128
           +++D  +
Sbjct: 125 QARDRLK 131


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     ++  P+ +V+D  +  +   
Sbjct: 22  RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAV-RAARDFRPDAVVLDVMLPDMDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 81  AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140

Query: 123 S 123
           S
Sbjct: 141 S 141


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 124 DALARDSRIDA 134


>gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
 gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
          Length = 226

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +      +     + V       EA  + E E   + +V+D  M  V   
Sbjct: 2   RILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENY-DAVVLDIMMPKVDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G  + V  L  + + E  + G   GA+ +L KPF  + L   +R + + ++
Sbjct: 61  TVLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRRKE 120

Query: 123 SKDEN 127
           +  +N
Sbjct: 121 TVTDN 125


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +      L    GF    A     A    ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGA-DIVLLDLMLPGMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GNDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVL 116

Query: 119 QMQKSKDENQFLD 131
           +  +  +    LD
Sbjct: 117 RRGQEAESETSLD 129


>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    E+  + +++D  M  +  F
Sbjct: 13  NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKI-NEVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELF-AEHTIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESE---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|160889191|ref|ZP_02070194.1| hypothetical protein BACUNI_01612 [Bacteroides uniformis ATCC 8492]
 gi|156861198|gb|EDO54629.1| hypothetical protein BACUNI_01612 [Bacteroides uniformis ATCC 8492]
          Length = 1310

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            LLL +    +R+      +   + V       +A E   +E+ P+ ++ D  M      E
Sbjct: 1068 LLLAEDDADMREYLVDSLSSE-YKVVAVPDGGKALETA-REINPDIIISDIVMPVLEGDE 1125

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L    + E +I G  AGAN +++KPF+   L+  +R + Q +
Sbjct: 1126 LCRILKSSVDTSHIPIILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1185

Query: 122  KSKDE 126
            +   E
Sbjct: 1186 QHLRE 1190


>gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 244

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L  D    +R+V R L    G+ V EA +  EA E    +   + +++D  M G  
Sbjct: 17  MKKILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKA--DHTIDLIILDVMMPGCS 74

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R+    +   + +L  +        G  AG + +L+KPF+   L+  +  + 
Sbjct: 75  GVEACGEIRKK---SSAPILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAML 131

Query: 119 QM 120
           + 
Sbjct: 132 RR 133


>gi|302878235|ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
 gi|302581024|gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase
           [Gallionella capsiferriformans ES-2]
          Length = 636

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+      K+   +    G  V  A +  EA     ++ +P  +V D  M  +   
Sbjct: 324 RVLVVEDDPATLKLLDAMLKSAGHTVALAANGLEALRMIRQQ-VPQLIVSDWMMPEMDGL 382

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     +++   L  +   E++I    AGA+ +LLKP + +     +R   ++
Sbjct: 383 SLCRKLRESDAWRNIYTVILTAQESPERLIQAFEAGADDYLLKPISPKIFLARLRAAHRV 442

Query: 121 QKSKDEN 127
            + + E 
Sbjct: 443 IQMQAEL 449


>gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
 gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece
           sp. CCY0110]
          Length = 458

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD      KV   +     + V +A     A E  + E  P+ +++D  M      
Sbjct: 5   TILIVDDQLPNLKVLSTMLEGKNYKVRKAVDGESAIEAVQIEP-PDLILLDIKMPNIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      DV + ++    +    +     G   ++ KPF  E +   +     +
Sbjct: 64  EVCQRLKSDDKTKDVPIIFISALSEVFDKVKAFEVGGIDYITKPFQEEEILARINSQLTI 123

Query: 121 QKSKDENQF 129
           +K +   Q 
Sbjct: 124 KKQQKLLQQ 132


>gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255]
 gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase
           [Nitrobacter winogradskyi Nb-255]
          Length = 457

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++     +   F V  A++  +A E C +    + +++D  M  +  F
Sbjct: 4   RVLVVDDVPANVRLLEARLSAEYFDVLTASNGAQALETCARAEC-DIILLDVMMPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +    +    + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKANPATHFIPVVMITALDNPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRLRA 133



 Score = 72.9 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 2/111 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD      +    + +     V       EA     +      +V +       L 
Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAVDVEADPSEALFRAAESNYDLLIVSLGLENFDGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             +  R +     V +  +       +++ G   G N +LL+P +R  L  
Sbjct: 216 LCSQARSLERTRHVPILAVADADGSPRLLRGLEIGINDYLLRPIDRNELLA 266


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++V+    + ++ R+     G+ V       +A     KE +P+ +V+D  + G   +
Sbjct: 4   RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRL-KEHIPDLIVLDWMLPGLSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ L + 
Sbjct: 63  ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 121 QKSKDENQFLD 131
              +     L 
Sbjct: 123 ASPERLATVLA 133


>gi|94309460|ref|YP_582670.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353312|gb|ABF07401.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Cupriavidus metallidurans CH34]
          Length = 244

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V       +  +   +   P  +V+D  M  V  
Sbjct: 7   TQILVVDDDPELRDLLREYLTSQGFAVSVLHDG-DGLQARLERERPALIVLDLMMPKVDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 66  LTALRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125

Query: 122 KSK 124
            ++
Sbjct: 126 LAR 128


>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 61/133 (45%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +RK+ +    +  + + EA +  +A     K    + +++D  +  + 
Sbjct: 1   MEKILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLF-KNNNFDLIILDLMLPKIS 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++RQ+   +D+ +  L  +   E  IAG   GA+ +L KPF+   L   ++ L 
Sbjct: 59  GEEVCQNIRQI---SDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALL 115

Query: 119 QMQKSKDENQFLD 131
           +  ++  +   + 
Sbjct: 116 RRSQNVKKANVIA 128


>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
 gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|262273464|ref|ZP_06051278.1| copper-sensing two-component system response regulator CpxR
           [Grimontia hollisae CIP 101886]
 gi|262222442|gb|EEY73753.1| copper-sensing two-component system response regulator CpxR
           [Grimontia hollisae CIP 101886]
          Length = 240

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  +   L    G+ V  A +  E  +    +   + +++D  M  + 
Sbjct: 10  MANILLIDDDTELTSLLHDLLELEGYQVEIANNGQEGLDKISDQT--DLVLLDVMMPVLN 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++    +  V  L  + +    + G   GA+ +L KPF+   L   MR + + 
Sbjct: 68  GM-ETLRRLRDSWETPVLMLTAKGEEIDRVMGLELGADDYLPKPFSDRELLARMRAILRR 126

Query: 121 QKSKDENQFLDA 132
                E +  + 
Sbjct: 127 TAKHGEGKRSEE 138


>gi|134287657|ref|YP_001109823.1| two component LuxR family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134132307|gb|ABO60042.1| two component transcriptional regulator, LuxR family [Burkholderia
           vietnamiensis G4]
          Length = 312

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +              G++V  A S  +A +   + + P+ +++D  M  +  F 
Sbjct: 2   ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLAR-VTPDVVLLDAMMPDMDGFE 60

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + V ++    + E ++ G R G   ++ KP   E L   +    +  
Sbjct: 61  TCLRIKKDGRHEHLPVIFMTALTESEHVVHGFRVGGIDYVTKPVQPEELCARIGAHVRRS 120

Query: 122 KSK 124
           +++
Sbjct: 121 RAQ 123


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V +A    E  +  + E   + +++D  +  +  
Sbjct: 4   KKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEP-FDLIILDIMLPHING 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
            I  +R++   + + +  L  + +    + G   GAN ++ KPF  E L   +R   +  
Sbjct: 63  -IEVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAG 121

Query: 120 MQKSKDEN 127
            Q    EN
Sbjct: 122 RQLVSKEN 129


>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
 gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
          Length = 231

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+ D    +  +        G+ V + +   E  +  + +   + L++D  M  
Sbjct: 1   MKNITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQP-IDLLILDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    R      ++ + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGFEVTRRIREKH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|117925634|ref|YP_866251.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117609390|gb|ABK44845.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 252

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +R++        GF+        + RE  ++   P+ +V+D  + G     
Sbjct: 14  ILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRA-RPDLVVMDLMLPGEDGLT 72

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              ++R       + +  L   V+    I G   GA+ +L KPFN   L   +  + +  
Sbjct: 73  LTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRA 132

Query: 122 KSK 124
           +S+
Sbjct: 133 RSE 135


>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L++D    + K+ R  FN   F VF A    +  E     L  + +++D  +     
Sbjct: 4   KKILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKI-NNLEIDIIILDLMLPKKNG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    ++       + +  L  +      I G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 63  LDICRQLK---PHNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLK 119

Query: 120 MQKS-KDENQF 129
              + +D+N+ 
Sbjct: 120 RINNDQDQNEL 130


>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
 gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF     +   +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAF-RETKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|224536093|ref|ZP_03676632.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522312|gb|EEF91417.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1346

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+      +   + V EA     A     +E +P+ ++ D  M  +   
Sbjct: 1097 RILVVEDDEDMRQYIVSKLSKT-YNVQEAPEGKSAIHIA-REQMPDLIISDIMMPVMDGL 1154

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + V  L  +   E +  G +A A+ ++LKPFN + L   +  L + 
Sbjct: 1155 ELCRAIKNDMALAHIPVVLLTAKSLEEHVKDGYQALADDYILKPFNAQILLAKIESLIKN 1214

Query: 121  QKSKDEN--QFLD 131
            ++   +   Q L+
Sbjct: 1215 REKLRDLFCQKLE 1227


>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    + +V +      GF V   T+     +  +KE  P+ +++D  + G+  
Sbjct: 3   KKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEK-PDLVILDLMLPGISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ    ++V +  L  +V     I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  EELCKRLRQ---FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
           erythraeum IMS101]
 gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
           erythraeum IMS101]
          Length = 215

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             L+LVD    +  + +      G+ V  A +  EA E  E E +P+ ++ D  M  +  
Sbjct: 10  KHLMLVDDDPNLILLVKDYLEFRGYQVITAENGREALELLE-EQIPDLIICDVMMPQMNG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + H+R+      V V +L  +   +  + G   GA+ +++KPF  E L   +    +
Sbjct: 69  YNLVQHIRENLATEWVPVLFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLK 128

Query: 120 M 120
            
Sbjct: 129 Q 129


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+ V  A +   A     +E+ P+ +V+D  +      
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSA-QEIDPDVIVLDIMLPDFDGL 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L  +   E  +AG  AG + ++ KPF+ E +   +R L +   
Sbjct: 77  EVMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 123 SKDE 126
           + +E
Sbjct: 137 ASEE 140


>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + E+  + +++D  M  +  F
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMD-EVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 223

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA E  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A +   A     ++  P+ +V+D  +  +  F
Sbjct: 23  RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTA-RQFQPDAVVLDVMLPDLDGF 81

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   +   V V +L      E  +AG   G + ++ KPF+ E +   +R L + 
Sbjct: 82  AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 139


>gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
 gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    ++++ +      G+ V       +A +  E    P+ +++D  + G+  
Sbjct: 3   KRVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETH-APDLIILDGMLPGMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      ++ +  L    D    I G R GA+ ++ KPF+ + L   +    +
Sbjct: 62  NDICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATIK 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius UCC118]
 gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius UCC118]
 gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 233

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V    +  +A +        +++++D  + G+ 
Sbjct: 1   MAKVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKY-DFIILDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R        ++  L  + D    I G   GA+ +L KPF+   +   ++ + + 
Sbjct: 60  GIEITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRR 119

Query: 121 QKSKDEN 127
            +   +N
Sbjct: 120 VEHYSDN 126


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    E     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 124 DALARDSRIDA 134


>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 240

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + +V+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQ-MDRLLERENFHLMVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     D+ +  L  + D    I G   GA+ +L KPFN   L    + + + 
Sbjct: 66  SICRRLRQQEN--DMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRR 123

Query: 121 QKSKD 125
           + S+ 
Sbjct: 124 RSSEA 128


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    + +         G+ V              +E  P+ +++D  + G+   
Sbjct: 5   NILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNA-RESDPDLILLDWMLPGMSGV 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +V +  L  + D    +AG  AGA+ +++KPFN E L   +R   +  +
Sbjct: 64  DICKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQ 123

Query: 123 SKDEN 127
             D +
Sbjct: 124 QDDPD 128


>gi|117926854|ref|YP_867471.1| response regulator receiver protein [Magnetococcus sp. MC-1]
 gi|117610610|gb|ABK46065.1| response regulator receiver protein [Magnetococcus sp. MC-1]
          Length = 564

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD   I   +   L    G  VF A +     E    E  P+ +++D  M  + 
Sbjct: 1   MK-ILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDE-RPDLVLMDIRMPLMN 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++ +     V + +L    D E +     AG + FL KPFNR  L+  +  + 
Sbjct: 59  GYEAARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNRTILQAKIGAME 118

Query: 119 QMQK----SKDENQFLD 131
           ++ +     +++ + L+
Sbjct: 119 RIGQLHGVLREQKELLE 135


>gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ]
 gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ]
          Length = 246

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ G+ V    +V +  +      L N +V+D  + G    
Sbjct: 13  KILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQ-MDRLLGRELFNLVVLDLMLPGEDGM 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       V +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 72  SACRRLRASDNQVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRRQ 130


>gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
 gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
          Length = 233

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    VR +         +    A++   A         P+ +++D  +  +   
Sbjct: 6   TILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHN-PDIILLDLGLPDIDG- 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I  ++++   +++ +  +    +    I     GA+ +L KPF+ E L   +R   + 
Sbjct: 64  IEIIKKVRSWSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRVTLRR 121


>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
 gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
          Length = 233

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +  F   G+ V  A    EA  F +     + +++D  M  +  F
Sbjct: 4   KILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTY-SLILLDIMMPKLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++       V  L    D    + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  -DTLKEIRKSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRR 119


>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 224

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + K+        G  V        A    E+E  P+ +++D  + G  
Sbjct: 1   MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEH-PDLVILDLMLPGTH 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R         +  L    D   ++ G   GA+ ++ KPF    L   +R L 
Sbjct: 60  GRDVCRALRLRHA---TPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++   ++R +     ++ G+ V +A +  E      +E  P+ +++D  +  + 
Sbjct: 1   MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIV-QEFAPDVVLLDLMLPDMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R+    + V +  L M+ +  + +   +AGA+ ++ KPF+   +   +  L 
Sbjct: 60  GMGVCASIRER---SHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALI 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSQ 120


>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 224

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++  H     G  V EA    +A    + E   + LV+D  M G+ 
Sbjct: 1   MTRVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFD-ETKVDLLVLDIMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    TD+ +  L  + +  +++ G   G + +L+KPF+   L   ++ L 
Sbjct: 60  GWELCRKLREQ---TDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYR 120


>gi|300868158|ref|ZP_07112790.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300333782|emb|CBN57970.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 460

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++   ++R+    L     F V    +     +    E +P+ ++ D  M    
Sbjct: 1   MIKILVIEDESLIRETLVELLEAHDFRVSAVENGRMGVKVALSE-IPDLILCDVQMPDLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +RQ  L + V   +L  +    +   G   GA+ +L KPF +E L  A+  + 
Sbjct: 60  GYEVLKALRQNRLTSAVPFIFLTAQSAKAEFRRGMELGADDYLTKPFTKEELLGAIASIL 119

Query: 119 QMQKSKDE 126
             +K+  +
Sbjct: 120 SKRKTITQ 127


>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
 gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+ D    +  + +    + G+ +++A +  EA E   ++ +P+ +++D  M  + 
Sbjct: 1   MTSILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIV-QDKMPSLVILDVMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         +  L  + +    I G   GA+ +++KPFN   L   ++ + + 
Sbjct: 60  GLEVCKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRR 119

Query: 121 QKSKDEN 127
            ++   N
Sbjct: 120 IQNIQAN 126


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + ++ R    D G+ V  A      +   E+    + LV+D  + G+  
Sbjct: 5   KRVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNW-DALVLDLMLPGIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRT 123

Query: 122 KSKDENQFLDA 132
            +   N  +++
Sbjct: 124 DALARNARMES 134


>gi|119946934|ref|YP_944614.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
 gi|119865538|gb|ABM05015.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Psychromonas ingrahamii 37]
          Length = 711

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     R + R       F V EA     A    E  + P+ +++D  M G+ 
Sbjct: 1   MTRVLVVDDDITARLMARQALGKENFAVIEAEDGFAALALFEA-VQPDIVLLDVEMPGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+ P G  V +     + D + +     AGA  F+ KPFN + L   +R + 
Sbjct: 60  GFEVCRQLRRFPCGKLVPILMATGQDDLDSVRQAYEAGATDFVTKPFNWKILAHRLRYMV 119

Query: 119 QMQKSKDENQFLD 131
           +     ++ + L 
Sbjct: 120 RASDITEQLEELQ 132


>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
           variabilis ATCC 29413]
 gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
           variabilis ATCC 29413]
          Length = 245

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD     R          G+ V  A    EA    E    P+ +V D  M  +   
Sbjct: 22  TILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEV-YHPDLIVTDIVMPRMNGY 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  VRQ P    + V  L      ++ I G ++G + +L KPF  E L  A+  L + 
Sbjct: 81  ELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIHNLLER 140

Query: 121 QK 122
            +
Sbjct: 141 SQ 142


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            + + +++
Sbjct: 119 SQKQVKDE 126


>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
 gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
 gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 244

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 70  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129

Query: 123 SK 124
           ++
Sbjct: 130 NE 131


>gi|323493471|ref|ZP_08098593.1| response regulator [Vibrio brasiliensis LMG 20546]
 gi|323312294|gb|EGA65436.1| response regulator [Vibrio brasiliensis LMG 20546]
          Length = 376

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD +   R +   L     + V  AT+  +A    E   LP+ +++D  M  +   
Sbjct: 7   SVLVVDDNAENRVLLSGLLKPH-YKVLVATNGKQALSLAES-KLPDIILLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V +L  +   E    G   GA  ++LKP +   L   +    ++
Sbjct: 65  EVCLRLKDNSDTAFIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLARIATHLKL 124

Query: 121 QKSKDE----NQFLDA 132
           + + DE    N+ L+ 
Sbjct: 125 RGAMDELSHQNEILEE 140


>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|294636746|ref|ZP_06715086.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685]
 gi|291090047|gb|EFE22608.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685]
          Length = 263

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    VR++        G     A+   EA +    +  P+ +++D  M 
Sbjct: 1   MKARYRILIVDDEDNVRRMLTTALTLQGHETLTASHGAEALQRF-TDTPPDVVLMDIRMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +    A            V  +    + E  I   R+GA  +++KPF+ + L   ++  
Sbjct: 60  TMNGIDALKIMRTRRPRTPVILMTAYAEVETAIEALRSGAFDYVIKPFDLDELNLLIQRA 119

Query: 118 PQMQKSKDENQFL 130
            Q+Q  K E + L
Sbjct: 120 LQLQAMKQEIRSL 132


>gi|253999818|ref|YP_003051881.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|313201791|ref|YP_004040449.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|253986497|gb|ACT51354.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441107|gb|ADQ85213.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 245

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R++ +   ++ GF V   +   E           + LV+D  +     
Sbjct: 9   KKILMVDDDLRMRELLQRYLSEQGFSVKTVSDSTE-MNTVLSSEHIDLLVLDLMLPSEDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G+ + +  L    D    I G   GA+ +L KPFN   L   +  + +  
Sbjct: 68  LAICRRLRAAGSTMPIIMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVMRRN 127

Query: 122 K 122
           +
Sbjct: 128 E 128


>gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
 gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR5-3]
          Length = 236

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            ++L+VD    +R + R       +   EA ++ +A      +  P+ +++D  + G   
Sbjct: 4   RTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQ-RPDIVLLDWMLPGGSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E +  +++     ++ V  L  +   + +I G   GA+ ++ KPF    L   ++ L +
Sbjct: 63  IELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKALLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +        +  G+ V +A    +A     +    + L++D  +     L
Sbjct: 2   RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQA-GTLAQNHHYDLLILDWMLPHQSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R         + +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICAQLRSQQN--RTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38]
 gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ +  A++  EA    +KE LP  +++D  M
Sbjct: 1   MKKKDIKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKE-LPQLIIMDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R+ P   D  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGMEACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKV 119

Query: 115 RELPQM 120
           + L + 
Sbjct: 120 QALLRR 125


>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
 gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +      +  GF V  A +           L  + +++D  + G+   
Sbjct: 2   RILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVT-LEFDLIILDIMLPGMDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+   G    V +L      E  +AG +AG++ +L+KPF+   L   +  + + 
Sbjct: 61  TLCRKLRK-EAGVQTPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRR 119

Query: 121 QKSKDENQFLDA 132
            +    N+   A
Sbjct: 120 SQPVQSNRLQVA 131


>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 213

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LLLVD    +  + +      G+ V  A +  EA +      +P+ +V D  M  +    
Sbjct: 10  LLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLL-TTTVPDMIVCDIMMPEMDGYA 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           FI  VRQ P  + + V +L  +      + G   GA+ ++ KPF  E L   ++   + 
Sbjct: 69  FIEQVRQNPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCLRQ 127


>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +  + R+  +  G+ V  A    EA     KE  P+ +++D  +      
Sbjct: 4   KILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKED-PDLILLDIMLPKQDGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L    +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  SVCKKLREKITS---PIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRR 119

Query: 121 QKSKD 125
               +
Sbjct: 120 IALSE 124


>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
 gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
          Length = 238

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQ-MDRLLSRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q
Sbjct: 65  SICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123


>gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
          Length = 235

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A        +P+ +++D  +  
Sbjct: 1   MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVS-YVPDIVILDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  ++++   ++V +  +    +    I     GA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IEIIKRIRTWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +      +  G+ V  A++  +  +   ++  P+ L++D  +  +    
Sbjct: 5   ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIA-RDSSPDLLILDWMLPVISGLD 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R    G +  +  L  + +    + G  AGA+ ++ KPF+ E L   ++   +   +
Sbjct: 64  LCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTHA 123

Query: 124 KDEN 127
           +D N
Sbjct: 124 QDLN 127


>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
 gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
          Length = 272

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    +     E+    + L++D  + GV  
Sbjct: 38  KRILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGW-DALILDLMLPGVDG 96

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 97  LEICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 156

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 157 DALARDSRIDA 167


>gi|329957618|ref|ZP_08298093.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
 gi|328522495|gb|EGF49604.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
          Length = 1492

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F    + + EA +  E  +   K  LP+ ++ D  M        
Sbjct: 1222 LLVEDNSELRIFLRSIFASE-YRIVEAANGVEGLDKALK-FLPDIIISDVMMPEKDGIAM 1279

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  ++ L  Q Q
Sbjct: 1280 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQRQ 1339

Query: 122  KSKD 125
            K + 
Sbjct: 1340 KLQA 1343


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A     A +   +    + +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SLVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LIRR 120


>gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++  +     G+ +  A++  +A    +KE LP  +++D  M  +  
Sbjct: 6   TKILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKE-LPELIIMDVMMAEMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                H+R++P   +V + +L    +    +AG  AGA+ ++ KP   + L   ++ L +
Sbjct: 65  MEACEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVKALLR 124

Query: 120 MQKSKD 125
             K ++
Sbjct: 125 RLKEQE 130


>gi|186683397|ref|YP_001866593.1| AraC family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465849|gb|ACC81650.1| two component transcriptional regulator, AraC family [Nostoc
           punctiforme PCC 73102]
          Length = 272

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++   + R++        GF    A +     +    E  P+  + D  M    
Sbjct: 1   MIKVLIIEDEQLTREMLLDYLESEGFETMSAKNGRIGVQKV-HEHRPDLAICDIMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + Q P    +   +L  + +  ++  G   GA+ +L+KPF  E L  A+    
Sbjct: 60  GYGVLKTLHQNPTTAVIPFIFLTGKSNKAEIRQGMALGASDYLIKPFTPEELLGAIAAQL 119

Query: 119 QMQKSKDE 126
           + Q    +
Sbjct: 120 KKQAILKQ 127


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    +  +        G+ V  A    E  E        +++++D  +  + 
Sbjct: 1   MKKVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPY-DFIILDLMLPSMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +RQ  +  +  +  L  + D  + I G   GA+ ++ KPF+   +   M+ + 
Sbjct: 60  GMDICKKLRQEKI--EAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIM 117

Query: 119 QMQKSKDENQ 128
           +   SK + +
Sbjct: 118 RRMSSKSKAE 127


>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    + ++ R       F V  A    +A    ++  + + +V+D  M G   
Sbjct: 5   RTILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPV-HGIVLDVMMPGQNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R       V + +L    +    I G   G + +++K  +   +   ++ + +
Sbjct: 64  FELCRTIRSSSS---VPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 120

Query: 120 MQKSKDENQFLDAI 133
              ++ E +   A+
Sbjct: 121 RSSAQQEQERSLAV 134


>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            + + +++
Sbjct: 119 SQKQVKDE 126


>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V          +    E   +  ++D  + GV 
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEE-FDLFILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  V  +  + D    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICKKIRE---TKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    + K  +   N   + V  A    EA +    +   + +++D  M     +
Sbjct: 5   TILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQK-IDLILMDIMMPKKNGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +RQ  +   + +  L  + +    I G   GA+ ++ KPFN   L   +  + + 
Sbjct: 64  DTTMLIRQESI---IPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRR 120


>gi|288942102|ref|YP_003444342.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897474|gb|ADC63310.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 304

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD      +V         + V  ATS  +A E    +  P+ +++D  M  +   
Sbjct: 12  SILIVDDLPANIRVLADTLKS-DYRVRVATSGLKALEVAAGDPPPDLILLDVMMPEMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + + ++  + + E+   G   GA  ++ KPF+   +R  +R    +
Sbjct: 71  EVCRRLKDDPRTSTIPIIFVTAKDEAEEEARGLELGAVDYITKPFHLPIVRARVRTHVNL 130

Query: 121 QKSKDENQFLDAI 133
           ++  D    L ++
Sbjct: 131 KRKTDLLDSLASL 143


>gi|218440687|ref|YP_002379016.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218173415|gb|ACK72148.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 124

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +           G+ V  A     A     +E +P+ L++D  +  + 
Sbjct: 1   MYHILLIDDEEPLLASLSFYLIKEGYKVTTAADGLTAL-KVIQENMPDILILDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R     +DV +  L  +      + G ++GA+ ++ KPF+   L   +  + + 
Sbjct: 60  GIELFWRIR-AFSDVPILMLTAKDHEADKVWGLKSGADDYVTKPFSTRELIARIEAILRR 118


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    E+    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRSRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|126650201|ref|ZP_01722429.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
 gi|126592851|gb|EAZ86833.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
          Length = 1021

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   I  +V   +  +  + +   TS  +A    +     + ++ D  M  +   
Sbjct: 689 RILVVDDEPINLRVVETILANEQYDIVTVTSGLDALVSIQSHEW-DLVISDVMMPKMSGY 747

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+    TD+ +  L      + +  G  AGAN ++ KP +   LR  +  L ++
Sbjct: 748 ELVRLIRKQFSITDLPILLLTARSQPQNLEKGFLAGANDYVTKPVDALELRSRVAALIKV 807

Query: 121 QKSKDENQFLDA 132
           ++S  E   ++A
Sbjct: 808 KRSIQERHRMEA 819


>gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato T1]
 gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tomato T1]
 gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 705

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR +   L  + G+    A S  +A    +    P+ +++D  M G+  +
Sbjct: 7   TILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDA-RAPDLILLDIMMPGMDGY 65

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L    +    ++G  AGA  +L KP     L   +R L ++
Sbjct: 66  EVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 249

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LL +    +R          G+ V       EA     +   P+ L++D  M G+  
Sbjct: 3   QTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTP-PDVLLLDVMMPGIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G    +  L   V+    IAG  AGA+ +++KPF+ E +   +R L +
Sbjct: 62  LQVCRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  E  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDEN--QFLDA 132
             +E   Q L+A
Sbjct: 118 EPEEAVPQALEA 129


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+       + R    + GF V       EA      E+  + +V+D  + G+  F
Sbjct: 2   RVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQA-SEIAYDVIVLDLMLPGLDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L    +    + G   GA+ +L KPF+ + L   +R L + 
Sbjct: 61  EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR 118


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R +      + GF    A    E  E  +K  LP+ +++D  M G   F 
Sbjct: 9   ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKN-LPDLILLDIMMPGEDGFS 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR       V V +L  + +    + G + G + +++KPF+   L   +  + +  
Sbjct: 68  VCERVRAQYE---VPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRS 124

Query: 122 KS 123
            S
Sbjct: 125 GS 126


>gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 228

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +  V        GF+   A +   A E       P+ +++D  +   G 
Sbjct: 7   KRILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRA-FRPDLILLDLMLPEIGG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R     +DV +  +  + +    + G   GA+ ++ KPF+   +   +R + +
Sbjct: 66  LEVARTIRAQ---SDVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 668

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL +   + R          G  V  A    EA     +    + +++D  M     L
Sbjct: 546 RILLAEDEPVNRIFTVRALTKLGHQVETAVDGREALALLGRAP-FDLVLMDIQMPRLNGL 604

Query: 61  EFIAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           +    +R      L   + V  L           G  AG + ++ KPF  + L  AM   
Sbjct: 605 DATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLEAGMDEYVTKPFEPQELVAAMERA 664

Query: 118 PQMQ 121
            + +
Sbjct: 665 LRKE 668


>gi|301301253|ref|ZP_07207408.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851129|gb|EFK78858.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 223

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + ++     G+ V    +  +A +        +++++D  + G+ 
Sbjct: 1   MAKVLVVDDEQAITTLLKYNLEKAGYEVKIVNNGNDALDEGLTGKY-DFIILDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R        ++  L  + D    I G   GA+ +L KPF+   +   ++ + + 
Sbjct: 60  GIEVTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRR 119

Query: 121 QKSKDEN 127
            +   +N
Sbjct: 120 VEHYSDN 126


>gi|284053870|ref|ZP_06384080.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira platensis str. Paraca]
          Length = 286

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ +     +      + G  +  AT+  EA    E  + P+ +++D  M  +  F
Sbjct: 8   TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEA-IQPDLILLDIVMPKMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P   ++ V  +    D    + G   GA  ++ KPF  E +   +    ++
Sbjct: 67  ETCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKI 126

Query: 121 QKSKDEN 127
           +    + 
Sbjct: 127 RYLTQQL 133


>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 234

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    + ++  + +++D  M  +  F
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMD-DVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ V  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 224

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R      G+ V  AT    A +   +E  P+ +++D  +  + 
Sbjct: 1   MTFVLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIA-RERTPDVVILDLGLPDID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +         V  L      +  +    AGA+ ++ KPF  +     +R   + 
Sbjct: 60  GVTVLSKLREFCAS-PVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRR 118

Query: 121 QKSKD 125
               D
Sbjct: 119 TGLVD 123


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+LLVD    +  +        GF    AT+  +A     +  +P+ +V+D  +    
Sbjct: 1   MTSVLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRR-RIPDLVVLDLMLPDVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++       V V  L  + +    + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GTEVCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALA 119

Query: 119 QMQKSKDENQF 129
           +   +    + 
Sbjct: 120 RRTGAGRPAER 130


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+      +  +      GF    A     A E C     P+ +++D  +    
Sbjct: 1   MPRILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRT-TAPDLVILDRMLPLVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      ++ +  L         + G R GA+ ++ KPF+   L   +  + 
Sbjct: 60  GAEICRRLRA---AGNIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL 116


>gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 234

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---VL 60
           +L+V+    +R++        GF   +A  V EA +       P  +++D  + G    +
Sbjct: 6   ILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDH-RPALILLDWMLPGDKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F   ++   L +++ V  L  + + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DFCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR 124

Query: 121 QKSKD 125
             +  
Sbjct: 125 SSALS 129


>gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    + ++ R      GF +    +  +A E    +  P+ +++D  +  +  
Sbjct: 4   TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQN-PDLILLDLMLPDIDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         +  L  + +    + G   GA+ ++ KPF    L   +R + +
Sbjct: 63  LEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
 gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +  +        GF V +AT+  +      KE  P  LV+D  + G    
Sbjct: 5   TILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLA-KEKKPALLVLDLMLPGLEGQ 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++Q      + V  L         I G   GA+ +L KPF+   L   +R + + 
Sbjct: 64  EVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123

Query: 121 QKSKDEN 127
           Q   +E 
Sbjct: 124 QTGPEEQ 130


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    +  + +      GF V+ A           K+  P+ +++D +M G+  
Sbjct: 3   TRVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGL-AATKKYQPHLVLLDIAMPGLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   LG D+ +  L    D    +     GA+ ++ KPF+ + L   MR + +  
Sbjct: 62  LELCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRH 120

Query: 122 KSKDEN 127
               E 
Sbjct: 121 TGSQEM 126


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V  A +  E  E    E   + +++D  +  +  
Sbjct: 3   KRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120

Query: 122 KSKD 125
             + 
Sbjct: 121 DIEA 124


>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
          Length = 239

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 227

 Score =  138 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++ +      GF V        A     +E  P+ +++D  +  +  
Sbjct: 3   KKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEEN-PDLIILDLMLPEISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L    +    + G   GA+ ++ KPF  + L   ++   +
Sbjct: 62  WDVCREIRKE---SHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSE 121


>gi|300868512|ref|ZP_07113131.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333501|emb|CBN58319.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 431

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +    ++   L +  G+ V  A S   A E C + L P+ +++D  M  +  F
Sbjct: 11  TILVVDDNSENIELLADLLSGVGYQVAIAKSGKAALE-CLEFLQPDIILLDVMMPEIDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ + ++    D    + G   GA  ++ KP   E     +R   Q+
Sbjct: 70  ETCRQIKSNLANRDIPIIFMTALSDSVNKVKGLSMGAVDYITKPIEYEETLVRIRIQLQV 129

Query: 121 QKSKDENQ 128
           + S+ + +
Sbjct: 130 RDSQKQLE 137


>gi|298505432|gb|ADI84155.1| sigma-54-dependent transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 461

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+V  +   + G+ V  A S  E     + E  P  +V D  M G+  F
Sbjct: 10  RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFD-ERSPALVVTDLKMPGMGGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++      D  V  +      E  +   +AGA  ++ KPFNR+ L+  +++  +M
Sbjct: 69  RLLQEIKGRS--PDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 126

Query: 121 QKSKDENQFL-DAI 133
                EN+ L +A+
Sbjct: 127 LGLSRENRRLREAL 140


>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R++        GF V    +  +A     +E  P+ +V+D  +     F
Sbjct: 6   RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAV-REQRPDLIVLDVMLPDFDGF 64

Query: 63  IAHVRQMPLGT-----DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               R              V +L      E  I+G RAG + ++ KPFN E L   +R +
Sbjct: 65  EVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124

Query: 118 PQMQKSKDENQFL 130
            +    +  +  L
Sbjct: 125 LRRTSGRQADGRL 137


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R+  +       + V  A    E  E  +     + +++D  M  + 
Sbjct: 1   MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSN-FYDLILLDLMMPKLS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +++ +  L  +      +     GA+ +L KPF  E L   +R   
Sbjct: 60  GEEVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVAL 116

Query: 119 QMQKS 123
           + + +
Sbjct: 117 RNKSN 121


>gi|157363872|ref|YP_001470639.1| response regulator receiver protein [Thermotoga lettingae TMO]
 gi|157314476|gb|ABV33575.1| response regulator receiver protein [Thermotoga lettingae TMO]
          Length = 124

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S ++RK+        G+ V EA    EA E   +E  P+ +++D  M  +  F
Sbjct: 4   RVLVVDDSEVLRKIVSFNLIKEGYSVQEAKDGREALEKLRQEK-PDLVILDIMMPYIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     ++ V  L  +            GANSFL KPF+   L   +R + Q 
Sbjct: 63  EVLRTMRKDENLKEIPVIMLTAKGGESDPKTALELGANSFLTKPFSPLKLLEEVRRVIQR 122


>gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
 gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +  +  +      +  F VFEA +  EA EF  K    + +++D  M  +   
Sbjct: 4   KILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFL-KNDKISLMILDIMMPEMDG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  ++ +    D  + +L  +   +  I G   GA+ +L KPF+   L   +  L +   
Sbjct: 62  IEVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNN 121

Query: 123 SKDEN 127
            +  N
Sbjct: 122 HRSNN 126


>gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 226

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+++ +H + +V +  F +  + V  A           +    + +V+D  + G+ 
Sbjct: 1   MK-LLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRA-RSGEFDCIVLDVMLPGMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R    G D  V  L  +   +  + G   GA+ +L+KPF+ + L   +  L + 
Sbjct: 59  GFELIDRFREEGHDTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRR 118

Query: 121 QKSKDE 126
              +  
Sbjct: 119 HSEQRR 124


>gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R   +  F    F+V EA++   A E    E  P   ++D  + G+ 
Sbjct: 1   MKKVLIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVEN-PIVTILDVMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L         I G   GA+ +++KPFN + L   +  L 
Sbjct: 60  GFKTCEILRR--EFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALL 117

Query: 119 QMQKSK--DENQFL 130
           +    +   +N+ L
Sbjct: 118 RRIGLQSDSKNEVL 131


>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 238

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  +      D G  V       +     E+    + LV+D  + GV  
Sbjct: 5   RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGW-DALVLDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +  ++  L++
Sbjct: 124 DALAQSARLES 134


>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +   +  + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 235

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+++    +R+  R L    G+ V EA +     E   +    + +++D  M G+  
Sbjct: 4   NNILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT--HLVILDIMMPGISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++   ++V V +L  +      + G  AG + +L+KPF+   L   ++ L +
Sbjct: 62  IRTCEEIRKV---SNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLR 118

Query: 120 MQKSKDE 126
            +   D+
Sbjct: 119 RRNVYDK 125


>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A +   +  + + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGV-DLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|160892046|ref|ZP_02073049.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492]
 gi|156858524|gb|EDO51955.1| hypothetical protein BACUNI_04506 [Bacteroides uniformis ATCC 8492]
          Length = 1355

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +R+   +   D  + + +A +  E      +   PN +V D  M  +    
Sbjct: 1094 LLVVEDNADIREYIANELQDT-YKILQANNGKEGLILALR-YTPNIIVSDIMMPEMDGIA 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + LR  ++ L +M+
Sbjct: 1152 MCKGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLLEMR 1211

Query: 122  KSKDEN 127
            K     
Sbjct: 1212 KRLARQ 1217


>gi|150004703|ref|YP_001299447.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933127|gb|ABR39825.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1355

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +R+   +   D  + + +A +  E      +   PN +V D  M  +    
Sbjct: 1094 LLVVEDNADIREYIANELQDT-YKILQANNGKEGLILALR-YTPNIIVSDIMMPEMDGIA 1151

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + V  L  +   +    G  +GA+S+L KPF+ + LR  ++ L +M+
Sbjct: 1152 MCKGIKENMNTSHIPVILLTAKDSIQDKEEGYDSGADSYLTKPFSAKLLRSRIKNLLEMR 1211

Query: 122  KSKDEN 127
            K     
Sbjct: 1212 KRLARQ 1217


>gi|86158331|ref|YP_465116.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774842|gb|ABC81679.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 473

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +R+V   +    G+ V  A    +A     +  + + +V D  M   G
Sbjct: 1   MAHVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPV-HVVVTDLVMPRVG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +   R      DV V  +      +  +A  +AGA  ++ KPF ++ L+  + +  
Sbjct: 60  GMELLR--RVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQDELKKVIAKAA 117

Query: 119 QMQKSKDEN 127
           +    + +N
Sbjct: 118 RAHDLERQN 126


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    VR+V        G+ V  A    +A      E  P+ +V+D  +  +  F
Sbjct: 25  TVLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDE-QPDLVVLDVMLPKLDGF 83

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 84  AVCRRLRAESC---VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   +     +         +A +    E+ P+ +++D  + G+  
Sbjct: 3   TRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAF-HEVNPDLVLLDLMLPGLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L    D + ++AG  AGA+ ++ KPF  + L   +    +
Sbjct: 62  VEICRLIRSE---SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
 gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|238894841|ref|YP_002919575.1| putative two-component response transcriptional regulator
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238547157|dbj|BAH63508.1| putative two-component response transcriptional regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 246

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G+    A +   A     K    + +V+D  M G     
Sbjct: 7   ILVVDDDRDIRELIVDYLEKSGYRASGAANGK-AMWSVLKNHQIDLIVLDIMMPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P   D+ V  L    D    I G   GA+ +L+KPF    L   ++ + +  
Sbjct: 66  LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 124

Query: 122 KSKDEN 127
           ++   N
Sbjct: 125 RALPPN 130


>gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 223

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +A S  EA E   ++   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELI-QQKKFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+      + G+ + +A    EA +   +    + +++D  +  +   
Sbjct: 6   KILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDIL-RNTTVDLIILDIMLPKMDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + + +L  + +    I G  +GA  ++ KPFN   L   ++   +  +
Sbjct: 65  EACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYR 123

Query: 123 SKDENQ 128
                +
Sbjct: 124 VYQTEE 129


>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 224

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+    + +         G+ V  A           +E  P+ +++D  + G   +E
Sbjct: 5   ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAA-RESQPDLILLDWMLPGFSGVE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G  V V  L  + +    + G  AGA+ +++KPF+ E L   +R   +  
Sbjct: 64  VCRRLRA--TGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRT 121

Query: 122 KSKDEN 127
           + +D +
Sbjct: 122 QEEDPD 127


>gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 460

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         + V  A    EA +   K+  P+ +++D  M  +  F
Sbjct: 4   KILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL T + +  +    D    + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLTRL 122

Query: 121 QKSKDENQF 129
           +   DE + 
Sbjct: 123 KMIIDELRL 131



 Score = 78.7 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D      +   ++       +   +   EA      E   + ++ D         
Sbjct: 158 NVLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEAL-KVGIENGYDLIISDMQFSKTDGL 216

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R         +  L  + D   ++     GAN +L  P +   L   +    + 
Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276

Query: 121 QKSKDENQF 129
           ++ +D  + 
Sbjct: 277 KRYQDALRM 285


>gi|127511048|ref|YP_001092245.1| response regulator receiver protein [Shewanella loihica PV-4]
 gi|126636343|gb|ABO21986.1| response regulator receiver protein [Shewanella loihica PV-4]
          Length = 120

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA +  EA    + +   + ++ D +M  + 
Sbjct: 1   MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALTQAKSQDY-DLVISDVNMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I ++R +P      +  L  E   EK   G  AGA  +++KPFN + L   + ++ 
Sbjct: 60  GITLIRNLRSLPNYKFTPLLMLTTESGSEKKQEGRSAGATGWIVKPFNPDQLLATVNKVL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+VD    +R++  + F+  G+ V +A +  E  +  +     + +++D  M  +
Sbjct: 1   MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKA-KSFSLILLDVMMPKM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +    +     +++ V  L  +      I G   G + +++KPF+   L   +  + +
Sbjct: 60  DGYTMLCKLRES-SNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILK 118

Query: 120 MQKS 123
             KS
Sbjct: 119 RTKS 122


>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +         + G+    A     A +  +K L P+ +++D  +  +  
Sbjct: 12  RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADK-LHPDLIIMDLMLPVMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R       + V  L    D   ++ G   GA+ ++ KPF+   L   +R L + 
Sbjct: 71  IEATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 128


>gi|326800911|ref|YP_004318730.1| Crp/Fnr family transcriptional regulator [Sphingobacterium sp. 21]
 gi|326551675|gb|ADZ80060.1| transcriptional regulator, Crp/Fnr family [Sphingobacterium sp. 21]
          Length = 347

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+++ +  +R+    +    G+ VF AT      E   K   P+ ++ D  M    
Sbjct: 1   MKNVLIIEDNDDIRESTVEILELAGYRVFSATEGRSGVELALKNK-PDIILCDIMMPNLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + +      +   +L  + +   M      GA+ +L KPF+   L  A+    
Sbjct: 60  GYGVLFLLGKHQETASIPFIFLTAKAERADMRKAMEMGADDYLTKPFDDVELLNAIETRL 119

Query: 119 QMQKSKDENQFL 130
           + ++  D+ + L
Sbjct: 120 RKKEITDKRKPL 131


>gi|299145146|ref|ZP_07038214.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Bacteroides sp. 3_1_23]
 gi|298515637|gb|EFI39518.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Bacteroides sp. 3_1_23]
          Length = 1317

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187

Query: 122  KSKD 125
                
Sbjct: 1188 MLLK 1191


>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    V    R      G+ V  A++   A E       P+ +++D  + G+    
Sbjct: 11  ILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELART-RRPDVVILDIMLPGMNGLE 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                        +  L         + G   GA+ +L+KPF  E L   ++ L + ++
Sbjct: 70  VCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRKQ 128


>gi|293373563|ref|ZP_06619914.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292631461|gb|EFF50088.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1317

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187

Query: 122  KSKD 125
                
Sbjct: 1188 MLLK 1191


>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+ D +  + K+ +      GF V  A +  EA +  +    P  +++D  M     
Sbjct: 3   KNILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDV-CNPQIVLLDIMMPIIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     ++  +  +  + +    I G  +GA+ +++KPF+   +   ++ + +
Sbjct: 62  MEVCKSIR---FKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|284036649|ref|YP_003386579.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815942|gb|ADB37780.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1343

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
            M  +LL +    +        +   + V    +     E       P+ ++ D  M    
Sbjct: 1088 MPYILLAEDDDDIASFILTTLSTE-WRVLRVNNGKAGLEAAIMNG-PDLIISDVLMPELN 1145

Query: 59   VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              E    ++  P+ + + +  L  +V  E  + G  AGA+ +L KPF    LR  +R   
Sbjct: 1146 GYELCRQLKSNPITSHIPILLLTAKVSAESRLEGLNAGADDYLAKPFQVNELRARIRNRL 1205

Query: 119  QMQKSKD 125
              Q+   
Sbjct: 1206 AQQQQAR 1212


>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|298492712|ref|YP_003722889.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298234630|gb|ADI65766.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 437

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD +    KV        G+    AT    A    E    P+ +++D  M G+  F 
Sbjct: 12  VLLVDDNPNNLKVLSEAIQRCGWKALMATDGESAIRQTEYAH-PDLILLDVMMPGLDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  PL  +  V ++    D    + G   GA  ++ KPF  E +   ++   ++ 
Sbjct: 71  TCRRLKANPLTYNTPVIFMTALCDPTDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKIS 130

Query: 122 KSKDENQF 129
                 + 
Sbjct: 131 NLTRTLEQ 138


>gi|160884891|ref|ZP_02065894.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483]
 gi|156109926|gb|EDO11671.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483]
          Length = 1317

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187

Query: 122  KSKD 125
                
Sbjct: 1188 MLLK 1191


>gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
 gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 511

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    D G+    A    EA E   +E   + +++D  M  +   
Sbjct: 5   KILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAQEP-FDLIMLDIKMPRMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V  +      +  +   + GA  ++ KPF+ + +   +     + +
Sbjct: 64  EVLSRL--KGDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIGIDR 121

Query: 123 SKDENQFLD 131
           ++ EN  L 
Sbjct: 122 TRKENARLS 130


>gi|111225794|ref|YP_716588.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
 gi|111153326|emb|CAJ65078.1| putative two-component system sensory histidine kinase [Frankia alni
            ACN14a]
          Length = 1340

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           + + +G  V  A       +        + +++D  M  +  
Sbjct: 1215 RTVLVVDDDVRNVFAITSILDLYGLRVIHAADGRMGIDALRSNPGIDLVLMDVMMPEMDG 1274

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R MP   D+ +  +  +   +       AGA  ++ KP + E L   +R 
Sbjct: 1275 YATTTAIRAMPQFADLPIIAVTAKAMPDDRQKCLDAGATDYVTKPVDIEELLACIRA 1331


>gi|323483016|ref|ZP_08088410.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
           WAL-14163]
 gi|323691539|ref|ZP_08105808.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
           WAL-14673]
 gi|323403645|gb|EGA95949.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
           WAL-14163]
 gi|323504433|gb|EGB20226.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
           WAL-14673]
          Length = 242

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    V ++       + F    A +  +A    ++    + +++D +M+G+ 
Sbjct: 17  MKKILIVDDDKRVVRMLEEYMKLYNFQTLCAGNGKDALALYDET--VDLIILDINMQGMD 74

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     +V +  L         +    AGA+ +++KPF+   L   +R   
Sbjct: 75  GVEVCRRIRKQG---NVPIIMLSANAASFDKVEALGAGADDYIVKPFDPVELLARVRAHI 131

Query: 119 QMQKSKDENQFLD 131
              +    ++ ++
Sbjct: 132 GRTERFKASRTME 144


>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 238

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  +      D G  V       +     E+    + LV+D  + GV  
Sbjct: 5   RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGW-DALVLDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +  ++  L++
Sbjct: 124 DALAQSARLES 134


>gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146]
 gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda
           FL6-60]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|213961802|ref|ZP_03390068.1| putative DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga sputigena Capno]
 gi|213955591|gb|EEB66907.1| putative DNA-binding response regulator/sensor histidine kinase
           [Capnocytophaga sputigena Capno]
          Length = 903

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+V+ +  +R+  R++ +D  + + EA +  E  E  +K  LP+ ++ D  M      
Sbjct: 655 TVLIVEDNEDMRQFIRYILSDS-YNLIEAENGEEGFEVAKKH-LPDVVISDVMMPKTDGF 712

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    ++       + V  L      E+   G  +GA++++ KPFN + L+  +R+L + 
Sbjct: 713 DLCQLLKTNVATNHIPVILLTAYALDEQKQVGFESGADAYISKPFNVKLLKTRVRKLIEN 772

Query: 121 QKSKDE 126
           +K   E
Sbjct: 773 RKKIRE 778


>gi|83647884|ref|YP_436319.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635927|gb|ABC31894.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 540

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD +    K+     +  G+ +  A S  +A     K   P+ +++D  M G+  F 
Sbjct: 18  ILLVDDNPANLKILYETLDGRGYKLLVADSGEKALSIVRKSH-PDLILLDVMMPGMDGFE 76

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P      + +L    D +  + G  AG   ++ KPF  + +   +    ++ 
Sbjct: 77  VCRTLKQDPATASSSIIFLSALDDTDSKVMGFDAGGVDYISKPFQVKEVIARVETHLKIH 136

Query: 122 KSKDENQ 128
           + + + +
Sbjct: 137 RLEQQLE 143


>gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ VF A +  E     +K   P+ +++D  M
Sbjct: 1   MKKKDIRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKK-KQPHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R  P   +  + +L    +    +AG  AGA+ ++ KP   +     +
Sbjct: 60  PEMDGIEACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKV 119

Query: 115 RELPQMQKSKD 125
           + L +  K ++
Sbjct: 120 KALLRRLKDEE 130


>gi|220905533|ref|YP_002480845.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869832|gb|ACL50167.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 240

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++ LVD    +  +        GF V  A +  +A     +   P+ +V+D  + G   
Sbjct: 5   QTICLVDDDREILDLLSGYLKKHGFEVSCAENG-DALMDILRRDRPDLIVLDVMLPGQDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VR+      + + +L    +    + G   GA+ ++ KPF    L   +R + +
Sbjct: 64  FMVCREVRKQWR---IPIIFLSALGESTDRVVGLELGADDYMAKPFEPRELLARIRSVLR 120

Query: 120 MQK 122
             +
Sbjct: 121 RNE 123


>gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM
            17393]
 gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM
            17393]
          Length = 1316

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +  +    +   +   F V  A +  EA E   K+ + + +V D  M  +   
Sbjct: 1066 TILLVDDNIEILTYLQKELSR-NFKVVTAQNGREALEVLGKKNV-SLVVSDVMMPEMDGM 1123

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++ P    + V  L  +     +  G +AGA+ +L+KPF   TL   +  +   
Sbjct: 1124 ELCTYIKENPSLCHLPVILLTAKSMTIYVEEGFQAGADDYLVKPFKVSTLIVRINNILSG 1183

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1184 RKKLKE 1189


>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
 gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    +    + +     + V    +  EA ++    +  + +++D  M  +  F
Sbjct: 2   RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVY-DGVILDVMMPKMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +    G DV V  L  + + +  I G   GA+ +L KPF+ + L   +R + + +
Sbjct: 61  TVLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRK 119


>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++++    + +  +      G+ V  A+         + E  P+ +++D  +   G L
Sbjct: 4   KIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTE-RPDLVLVDVMLPRLGGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+     ++ +  L  +      +AG + GA+ +L+KPF  + L   +  L + 
Sbjct: 63  EVVREIRKTD--PELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRR 120

Query: 121 QKSKDE 126
           ++S+ E
Sbjct: 121 RRSRGE 126


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E+ PN +++D  +  +    
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKF-REVSPNLVILDLMLPVMDGIE 67

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R     ++V +  L  +   E  +AG  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 68  VAKRIR-KTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRR 123


>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +
Sbjct: 1   MQEKILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDKD--IDIILLDIMMPNI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F    ++R         + +L         I G   G + +++KPF+ + L+  ++  
Sbjct: 59  DGFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAH 115

Query: 118 PQMQKSKDENQF 129
            + +K    N  
Sbjct: 116 LRREKRVPLNNR 127


>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +  + +   +  G+ V  A    EA E  +    P+ +V+D  +      
Sbjct: 4   KILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQS-FEPDLIVLDIMLPKVNGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +       DV +  L  + D    + G   GA+ +L KPF+   L   ++   + 
Sbjct: 63  DVCKTL---TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRR 119

Query: 121 QKSKDENQFLDAI 133
                  +  DA+
Sbjct: 120 ATKAPAAKKTDAV 132


>gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 236

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 9/126 (7%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           MD   +L+++    +R+  R L     + V EA +  +  E  E     + +++D  M G
Sbjct: 1   MDREQVLIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT--DLVILDIMMPG 58

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R++   ++V V +L  +      + G  AG + +L KPF+   L   ++ 
Sbjct: 59  MSGLRTCEEIRRV---SNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKA 115

Query: 117 LPQMQK 122
           L +  +
Sbjct: 116 LLRRYR 121


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
 gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G+ V    +  +A +   ++ LP  +++D  +     L
Sbjct: 7   TILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWD-FIQQRLPQLILLDWMLPDQSGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R      ++ +  L  +   E  IAG   GA+ ++ KPF+   L   +  L + 
Sbjct: 66  RLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
            19707]
          Length = 1499

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD    +R   R++    G+ + EA +  +A EFC+++ +P+ +++D  M  +  F
Sbjct: 925  RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQ-MPDLVLMDAVMPVLDGF 983

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               A +R +P      V  +    D   + +   AGA  ++ KP +   LR  +  L   
Sbjct: 984  NACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLLDA 1043

Query: 121  QKSKDENQFLD 131
             +++ +   L 
Sbjct: 1044 SRAEKDIHQLA 1054



 Score =  123 bits (311), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ + + ++V   +   FG  V   ++  EA +      +   +++D  M  +  
Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAI-ANKVYELVLMDCHMPQMDG 720

Query: 62  --FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R    G   V +  +   V          AG N +L KP     LR  +R   
Sbjct: 721 YEATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 780



 Score = 53.7 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
            LL+VD+S   R+     FN +G     +    +A         +    + +++DE+M  
Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                    + +  L   V +  +  +      I+    G  +++ KP  + +L   +  
Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVIVS 637

Query: 117 LPQMQKS 123
             +  ++
Sbjct: 638 AVKQNEA 644


>gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1]
 gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32]
 gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR
           [Shewanella putrefaciens 200]
          Length = 241

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+ + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q 
Sbjct: 66  SICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125

Query: 123 SK 124
            +
Sbjct: 126 LE 127


>gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    V  + +      G+ VF A +  EA E   K   P+ +++D +M    
Sbjct: 1   MYKILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASKS--PDLMLLDVNMPEAD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    VR         + +L   ++ E  I G  +G + ++LKPF+ + L   +    
Sbjct: 59  GFEVCRKVR---DHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHI 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     ++  P+ +++D  +  +   
Sbjct: 21  RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTA-RDFRPDAVILDVMLPDMDGL 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R     +DV V +L      E  IAG  AG + ++ KPF+ E +   +R L + 
Sbjct: 80  AVLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 137


>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
 gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 238

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++ +      GF V  A            +   N +++D  + GV  F
Sbjct: 12  KVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQN-FNMIILDLMLPGVDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+     +  +  +    +    I G   GA+ ++ KPF+   L   ++     
Sbjct: 71  EICRQVREQ---KNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 127

Query: 121 QKS 123
            +S
Sbjct: 128 YQS 130


>gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
 gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
          Length = 253

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+        G+ + EA +  +A +   +    + +++D  M  +   
Sbjct: 26  KILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSGT 85

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R+    + V V +L  +            G + FL KPF +  L   ++ L + 
Sbjct: 86  ESCSAIRE---FSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRR 142

Query: 121 QKSKD 125
                
Sbjct: 143 YNIYK 147


>gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 222

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    +  + +      G+         +A E    E  P+ +++D  + G+   
Sbjct: 5   SILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAE-APDLILLDLMLPGLDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R+    TD  +  +   V+    + G   GA+ ++ KPF+   +   ++ + +  +
Sbjct: 64  SVC-REARRFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVR 122

Query: 123 SKDENQF 129
                + 
Sbjct: 123 GAPVEER 129


>gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
 gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT
            12056]
          Length = 1362

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LL + +  VR+  +     + + V +  +  +A +    E  P+ ++ D  M G+   
Sbjct: 1108 TVLLAEDNEEVRQYVKESLEPYFY-VLDVGNGKDALD-LSLEKYPDLILSDIMMPGMDGL 1165

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + V+Q      + V  +  +     +  G   GA+ +++KPF+ + L   +  + + 
Sbjct: 1166 ELCSRVKQDLQLGHIPVILMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINNILES 1225

Query: 121  QKSKDEN 127
            ++   + 
Sbjct: 1226 REKLKKL 1232


>gi|320353214|ref|YP_004194553.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase [Desulfobulbus propionicus DSM 2032]
 gi|320121716|gb|ADW17262.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Desulfobulbus propionicus DSM 2032]
          Length = 442

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD   ++R + R      G+ V EA     A E    E   + +++D +M G+    
Sbjct: 13  ILIVDDDEVIRMLMRQFLEAEGYAVVEAEDGRAALEKV-AEQSFDLVILDIAMPGIDGPS 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H+R         V  +    D + +     AGA  ++ KP     L+  +R +    
Sbjct: 72  VCEHIRSSMTDP-PPVLMITALDDEKSIERSYGAGAVDYIRKPLRWAVLKNRIRYILGSH 130

Query: 122 KSKDENQFLD 131
           ++K E + L 
Sbjct: 131 RAKQELELLS 140


>gi|253578578|ref|ZP_04855850.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|257413775|ref|ZP_04744208.2| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|251850896|gb|EES78854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|257202423|gb|EEV00708.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
          Length = 235

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +  +    F   G++V+ A +  EA     K   P+ +++D +M  +  
Sbjct: 14  QSILIVDDERDIVSMLNQYFCKIGYVVYTAINGKEALNAITKH--PDIILLDINMPDMNG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R         + +L   ++    I G   G + +++KPF+ + L   +    +
Sbjct: 72  FTICEKIRN---FVSCPIIFLTARIEDCDKIKGFAVGGDDYVVKPFSVDELEARVAAHLR 128

Query: 120 MQK 122
            +K
Sbjct: 129 REK 131


>gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum]
          Length = 457

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CE+    + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KTLSDELRIRA 133



 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 13/127 (10%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E   + ++++ + +      
Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  +     ++     G N ++++P +   L        + +
Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADNMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYNDRLR 282


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    +    +      G+ V  A++  E  E  ++E     ++ D  M  +
Sbjct: 1   MKERILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMI-DIMMPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  + + L +DV +  +  + +    + G   GA+ ++ KPF+   L+  +    +
Sbjct: 60  DGLTLC-KNIRLTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RYR 121


>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
           10712]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R +        GF V  A     A +  EK   P+ +V+D  +  +  F 
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEK-TSPDLVVLDVMLPDMDGFT 75

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R         + +L    D    + G   G + ++ KPF  E +   +R + +   +
Sbjct: 76  VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135

Query: 124 KD 125
            +
Sbjct: 136 IE 137


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
            DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
            DSM 574]
          Length = 1274

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLV+ +   +++ +HL  D G+ V  A +  +A E   +    + +++D  M  +  
Sbjct: 1053 TNVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSN-FDIVLMDMQMPVMDG 1111

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R       + +  L              AG + +L KP  R+ L   +++  Q
Sbjct: 1112 YETTRVIRSDERYKSLPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYIQ 1171



 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+ +     +++  +     G+ V       +A     K   P+ LV+D  +      E
Sbjct: 796 VLVAEDEWTTKQLIANYLEKAGYTVVATDQGKQALTLA-KIYQPDVLVLDILLPDLSGWE 854

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +A +++     D+ V    +  + E        GA  F+ K  + + L   +++L   +
Sbjct: 855 VLAKIKKDQETQDIPVVVCSVLPEKE---RAFSLGAVDFIEKTVSEKVLVNRLQKLTHSR 911

Query: 122 KS 123
           +S
Sbjct: 912 RS 913



 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              ++L+D   +  +    +    G+         EA  +       + +++D  M G+  
Sbjct: 916  THIVLIDDDKMALEFLNCIVGGAGYQTHSFMLAEEALNYIINGGQVHAIILDLLMPGMDG 975

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEV 84
              F+ ++R       + V     + 
Sbjct: 976  FEFLDNLRADANYKSIPVLIYTGKD 1000


>gi|299145092|ref|ZP_07038160.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
 gi|298515583|gb|EFI39464.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 3_1_23]
          Length = 1330

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+V+ +   R    +   D  + VF+A +  EA E          ++ D  M  +  
Sbjct: 1081 TSLLIVEDNDDFRNFLINCLKDT-YQVFDAPNGKEALEIL-AHQSIQIVISDVMMPEMDG 1138

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++     + + V  L      E  ++G + GA+ ++ KPFN E L   ++++ +
Sbjct: 1139 MELCRKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKILK 1198

Query: 120  MQKSKDE 126
              K+  E
Sbjct: 1199 WTKNNHE 1205


>gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLARENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 224

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++        GF  +EA    +A      E+  + +++D  M  + 
Sbjct: 1   MPKILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKI-AEVKIDMVILDIMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      D+ +  L  + +  + + G + G + +L+KPF+   L   ++ L 
Sbjct: 60  GWELCYELR---RYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYQ 120


>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
 gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M+ +L+VD    +R V   L    GF V        A +   ++ + + LV+D +M G  
Sbjct: 1   MNHILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHV-DLLVLDVNMPGPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+      + + +L         +AG  AG + +L+KPF+   L   +    
Sbjct: 60  GLEVCRQLRERAAV--LPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905]
          Length = 230

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +R        + G+ V +A    +A +  E   + + +++D  M  +   
Sbjct: 5   TVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEV-HLIILDIMMPNMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  TATFKIRAE-RNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRR 120


>gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+++    + ++        GF            E    E LP+ +++D  + G  
Sbjct: 1   MKTILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSE-LPDLILLDLMLPGLM 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +++      + +  L    +    + G   GA+ +++KPF+   L   +R + 
Sbjct: 60  GTEICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVL 119


>gi|304322337|ref|YP_003855980.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303301239|gb|ADM10838.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++          +     GF V  A +  +       E  P+ +V+D  + G+ 
Sbjct: 1   MTRILVIEDDEETASFIANGLKQEGFAVDTAKTGTDGLFQA-TESPPDLVVVDRMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  + V +L      E  +AG  AG + +L+KPF+   LR  +  L + 
Sbjct: 60  GVSVIKALRAAGVKIPVLFLTAMGAVEDRVAGLEAGGDDYLVKPFSFMELRARVTTLLRR 119

Query: 121 QKSKDENQFLDA 132
              KDE   L+A
Sbjct: 120 PPLKDEITRLEA 131


>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
          Length = 248

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +VD    + ++   +  + GF          A E     + P+ +++D  + G+ 
Sbjct: 9   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L  + D   ++AG  AGA+ ++ KPF    L   +R   ++
Sbjct: 68  GTEVA-RRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRI 126

Query: 121 QKSKDEN 127
            K   E+
Sbjct: 127 AKPAAED 133


>gi|329961774|ref|ZP_08299805.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531515|gb|EGF58355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1327

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V   ++  EA     KE  P  ++ D  M  +  
Sbjct: 1067 QKILIVEDNDELRAYLLQCLSST-YNVQVCSNGKEAL-VLVKEFWPELILSDIMMPEMGG 1124

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + ++ G + GA+ +++KPF+   L+ ++  L  
Sbjct: 1125 DELCSAIKNDMETSHIPVLLLTALADEKHILEGLQIGADEYIVKPFSLNILKASIANLLA 1184

Query: 120  MQKSKD 125
             +    
Sbjct: 1185 NRALLR 1190


>gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 46P47B1]
 gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 103P14B1]
 gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 12P80B1]
 gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC8]
 gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC1]
 gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis BC7]
 gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis CO72]
 gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis O35E]
 gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis 101P30B1]
          Length = 230

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--- 59
            +L+V+    + ++     +   F V +A     A      E  P+ +++D  M      
Sbjct: 4   KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEK-PDLILLDWMMPHGESG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++F   +++ P   D+ +  L  + + +  + G  AG + ++ KPF+   L   ++ + +
Sbjct: 63  IDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLR 122

Query: 120 MQKSKDENQFLDA 132
                   + + A
Sbjct: 123 RTGIDMGKELMQA 135


>gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208]
          Length = 222

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + K+  H     GF V EA    EA E   +    +  VID  M  +  F 
Sbjct: 1   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEA-EKIVETEQVHLAVIDVMMPNMDGFE 59

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      D+ V  L  +        G   G + ++ KPF  E L F +R L +    
Sbjct: 60  LCQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSNQ 119

Query: 124 KDE 126
             E
Sbjct: 120 ASE 122


>gi|254415908|ref|ZP_05029665.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177335|gb|EDX72342.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 366

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            S+L+VD       V        G+ +F A+S  EA    +  + P+ +++D  M     
Sbjct: 8   TSILIVDDDPNAFDVIEAHLYREGYDLFYASSGEEALNLLDS-IEPDVILLDVMMPKLNG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    ++       V V  +      E +     AGA+ F+ KP +   LR  +R + +
Sbjct: 67  IEVCRTIKSDSHWKHVPVIIVTALNSKEDLARSLNAGADDFITKPVSGIELRARVRSMLR 126

Query: 120 MQKSKDENQ 128
           +++  D  +
Sbjct: 127 IKQQYDALE 135


>gi|254415898|ref|ZP_05029655.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177325|gb|EDX72332.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 364

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+++L+++    +R+    L +   F V  A +     +  +++  P+ ++ D  M    
Sbjct: 1   MNTILIIEDEEGIRENIYELLSAEDFEVLLAENGKTGIQLAQQQ-RPDLIICDIMMPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-- 116
               +  +RQ      +   +L  +     +  G  +GA+ +L KPF RE L  A+    
Sbjct: 60  GYGVLTQLRQNLSTEAIPFIFLTAKSAKADLRQGMESGADDYLSKPFTREALLRAIAARF 119

Query: 117 ----LPQMQKSKDENQF 129
               + + Q  K  ++ 
Sbjct: 120 EKQGVLERQSQKKLDEL 136


>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA +    E   N +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++   T++ + +L  +   +  I G  +G + ++ KPF+   L   +  + + 
Sbjct: 63  -EAIKRIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
 gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +L+VD    + ++  +  N  G+ V  A    +A +   K+  P+ +++D  M
Sbjct: 1   MKKSDITILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKK-AKKKKPHLVILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R+     +  + +L    +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKV 119

Query: 115 RELPQMQKS 123
           + L +  KS
Sbjct: 120 KALLRRFKS 128


>gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 237

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    V +V  H   + G+ V  A    EA E        + +V+D  + G    E
Sbjct: 12  VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA--SGKIDLIVLDIMLPGVDGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      ++ + +L  + + E  I G   G + +L KP + + L   ++ + +  
Sbjct: 70  VCRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRS 129

Query: 122 KSKD 125
             ++
Sbjct: 130 GVEE 133


>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1361

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L VD       V        G  V +A +  +A E  ++  + + +++D  M  +   
Sbjct: 1241 TILAVDDDPRNLFVLTASLEQNGAEVHKALNGLKALEILKQHSV-DLILMDIMMPEMNGY 1299

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E I  +R  P   ++ +  L  +   E       AGAN +L KP + E L   ++   + 
Sbjct: 1300 EAIHEIRANPSYCEIPIIALTAKALKEDKQKCLDAGANDYLSKPVDYEILINMVQTWIKR 1359



 Score = 87.6 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 8/120 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L++D   +  +   ++    G     A    E      K   P  +++D  +  +   
Sbjct: 977  KILVIDDDLLFVENISYINQAQGLDTLSAHDGREGL-RVAKSHHPVGIILDLGLPDMRGE 1035

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGA-RAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +++ P    + VY +  +             GA  FL KP N   +  A R L Q
Sbjct: 1036 EVLEQLKRSPELRHIPVYIISAK----DKQRALVDQGAIGFLQKPVNDAQIATAQRTLLQ 1091



 Score = 38.6 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            +LL+++   + + +      + G          E           +  + D  +EG+   
Sbjct: 1099 TLLILEGPALQQDLIAEKAMNAGMQQLVVQKPEEVLAK-TAGHPFDLFLTDYDIEGMTCV 1157

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFE 87
            E    VRQ     ++ +         E
Sbjct: 1158 ELCQQVRQHQ--PELPIIIYSSRSLNE 1182


>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 241

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R +        GF V  A     A    +  + P+ +V+D  +  +  F
Sbjct: 16  KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQA-VRPDLIVLDVMLPDMDGF 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V +L    D    I G   G + ++ KPF  E +   +R + + 
Sbjct: 75  TVTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 132


>gi|301058488|ref|ZP_07199501.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300447410|gb|EFK11162.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 673

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 58/130 (44%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD   + R+  R + + FG     A +  +A      +  P+ +++D  M G+   
Sbjct: 2   RILIVDDELVSREKLRKIMSAFG-QCILAENGKDAMRIASSQNPPDLILMDILMPGMDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     +D+ + ++  + +      G   GA  ++ KPFN   ++  +R   ++
Sbjct: 61  EVCKKLKAKRKTSDIPLIFISGKSEEGDESKGFELGAVDYIRKPFNPSIVKARVRTHLEL 120

Query: 121 QKSKDENQFL 130
           +K +D  + L
Sbjct: 121 KKYRDRLEEL 130



 Score = 78.3 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
           ++L+VD     R++   +    G+     +S  EA     KE   + +++D  M   +  
Sbjct: 556 TVLVVDDEERQREIATKMLAKLGYNAEAVSSGEEA-TTYVKERSVDLILLDMVMPKGING 614

Query: 61  -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    + ++  G    V          ++      GA  ++ KP+  E L  A+++  +
Sbjct: 615 RETYEEIIKIRHGQKA-VIA-SGYAKTREVQIAQELGAGEYIKKPYTLEKLGIALKKELE 672

Query: 120 M 120
            
Sbjct: 673 K 673


>gi|145297354|ref|YP_001140195.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850126|gb|ABO88447.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 426

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + K+        G+ V  A S   A +   ++   + ++ D  M G+ 
Sbjct: 1   MSRILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA-DLVLSDLRMAGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R       + V  +         I   R+G  SFL KP +++ L   +     +
Sbjct: 60  GLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSL 119

Query: 121 QKSKDENQ 128
            + K + +
Sbjct: 120 TRPKQQQE 127


>gi|121593459|ref|YP_985355.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax sp. JS42]
 gi|120605539|gb|ABM41279.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax sp. JS42]
          Length = 377

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   L     + V  A S  +A    + +  P+ L++D  M G    
Sbjct: 21  TVLVVDDTPDNLTLMAGLLQGL-YRVKVAASGEKALVIAQSDAPPDLLLLDIMMPGIDGY 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + V +L    D +    G   GA  ++ KP +   L   +     +
Sbjct: 80  EVCRRLKANEATRHIPVIFLTARSDPDDEREGLALGAVDYITKPISPSILLARVATHLAL 139

Query: 121 QKSKD 125
           + + D
Sbjct: 140 KATAD 144


>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 226

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    ++ +        G+    A    EA +  ++  + + L++D  M  + 
Sbjct: 1   MKTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHV-DMLLLDIMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L    D   MI G   GA+ ++ KPF+   L   +  L + 
Sbjct: 60  GLETC-RKIREFSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRR 118

Query: 121 QKSK 124
           Q+ +
Sbjct: 119 QQIQ 122


>gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 18  MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D  V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 77  GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 136

Query: 121 QK 122
            K
Sbjct: 137 SK 138


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A    EA E    +  PN +++D  +     
Sbjct: 3   QKILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQN-PNLILLDVMLPKQDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R+        +  L  + +    + G   GA+ ++ KPF    L   ++   +
Sbjct: 62  FQVCKKLREKLA---CPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLR 118

Query: 120 MQKSK---DENQFLD 131
                   +E + L 
Sbjct: 119 RLTLSNPVEEQKLLK 133


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    E+    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGA-DIVLLDVMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRAKSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +      L    GF      +  +A    ++E   + +++D  + G+ 
Sbjct: 1   MSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGA-DLVLLDVMLPGMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R++     V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GMEVCRKLREVSS---VPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QMQKSK 124
           + + ++
Sbjct: 117 RRRSAE 122


>gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 457

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CE+    + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKANRKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KTLSDELRIRA 133



 Score = 71.4 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E   + ++++ + +      
Sbjct: 158 ILLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  +   E ++     G N ++++P +   L      L Q++
Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVAR--SLTQIR 273

Query: 122 KSKDENQFLDAI 133
           + +  ++   ++
Sbjct: 274 RKRCNDRLRASV 285


>gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 259

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V  A    +  +    + +P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYIPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L +  
Sbjct: 64  LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRS 123

Query: 122 -----KSKDENQFLD 131
                 + ++N+ L 
Sbjct: 124 DRAPLGASNQNEILS 138


>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E+ PN +++D  +  +    
Sbjct: 6   ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKF-REVNPNLVILDLMLPVMDGIE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++V +  L  +   E  + G  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 65  VA-RRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRR 120


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+ V +A +  EA    +     + +V+D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  V+++     + +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  G-IQVVKEVRKELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRR 118

Query: 121 QKSKDENQFLDAI 133
                  Q L+ +
Sbjct: 119 SNYATNLQELNKL 131


>gi|15926996|ref|NP_374529.1| truncated (putative response regulator ArlR [S [Staphylococcus
           aureus subsp. aureus N315]
 gi|13701213|dbj|BAB42508.1| truncated (putative response regulator ArlR [S [Staphylococcus
           aureus subsp. aureus N315]
          Length = 133

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +          + V       +  +        + +++D  +    
Sbjct: 1   MTQILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYY-DLIILDLMLPSIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + D    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRKIRQQ---QSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
 gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
 gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
 gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
 gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
 gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
 gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
 gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. W3110]
 gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
 gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
 gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
 gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
 gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
 gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
 gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
 gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
 gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
 gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
 gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
 gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
 gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
 gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
 gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
 gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
 gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
 gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
 gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
 gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
 gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
 gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
 gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
 gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
 gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
 gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
 gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
 gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
 gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
 gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
 gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
 gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
           and ompF: outer membrane protein synthesis [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
 gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
 gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
 gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
 gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
 gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
 gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
 gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
 gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
           [Shigella dysenteriae Sd197]
 gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
 gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K12 substr. W3110]
 gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
 gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
 gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
 gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
 gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
 gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
 gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
 gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
           3083-94]
 gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
           Et1/99]
 gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
 gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
 gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
 gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
 gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
 gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
 gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli 55989]
 gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia fergusonii ATCC 35469]
 gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI1]
 gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli S88]
 gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI39]
 gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli ED1a]
 gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli UMN026]
 gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
 gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
 gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli O157:H7 str. TW14359]
 gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
 gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
 gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
           12163]
 gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
 gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
 gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
 gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
 gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
 gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
 gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
 gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
           83972]
 gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
 gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
 gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
           BAA-2158]
 gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
           2457T]
 gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli W]
 gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
 gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
 gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
 gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
 gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
 gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
 gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
           CDC 74-1112]
 gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
           796-83]
 gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
           WV_060327]
 gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
           EC4100B]
 gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
           493-89]
 gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
           2687]
 gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           LSU-61]
 gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
 gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
 gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
 gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
 gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
 gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
 gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
 gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
 gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
 gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
 gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1044]
 gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1125]
 gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
 gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
 gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
           AA86]
 gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
 gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
           155-74]
 gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
 gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
 gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
 gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
 gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
 gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
 gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
 gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
 gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
 gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
 gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
          Length = 239

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 224

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+VD    V  + +      GF V  A S  EA +   ++  P+ +++D  M G+ 
Sbjct: 1   MDRILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQP-PDLVILDIMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
                 R      ++ V +L         + G  AGA+ +++KPF  E
Sbjct: 60  GMEVLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFE 107


>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + + +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  GL-EVVKVVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            ++  +++
Sbjct: 119 AENSVQDK 126


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+++    +R+  +       + V  A    E  E   K    + +++D  M    
Sbjct: 1   MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKF-KNNFYDIILLDLMMPKFS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +++ +  L  +      +     GA+ +L KPF  E L   +R   
Sbjct: 60  GEEVCKIIRK---TSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVAL 116

Query: 119 QMQKS 123
           + + +
Sbjct: 117 RNKSN 121


>gi|298530375|ref|ZP_07017777.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509749|gb|EFI33653.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 301

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 6/136 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I  +V   L  D  + +  A S  +A +   +E  P+ +++D +M G+  F
Sbjct: 7   RILIVDDEKINLRVLADLLKDK-YTIMLARSGEQALKLAHQEPRPDLILLDIAMPGMSGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++       + V ++      E+   G + GA  ++ KP +   ++  +R    M
Sbjct: 66  EVIKKLKHDDATNHIPVIFITALDSREQEEKGLKLGAVDYITKPISPPIVKIRVRNYLDM 125

Query: 121 Q---KSKDENQFLDAI 133
           Q   K  ++   LD +
Sbjct: 126 QHKYKLLEQKANLDGL 141


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+ V              +E  P+ +++D  + G+    
Sbjct: 6   ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTA-RESNPDLILLDWMLPGISGLD 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G+ V +  L  + D    +AG  AGA+ +++KPFN E L   +R   +    
Sbjct: 65  ICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHE 124

Query: 124 KDEN--QFLD 131
           +D +  QFLD
Sbjct: 125 EDPDLLQFLD 134


>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
 gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
          Length = 238

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|197119640|ref|YP_002140067.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
 gi|197089000|gb|ACH40271.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
          Length = 383

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +++VD +    ++      +  + +F ATS  +A E    +  P+ +++D  M G
Sbjct: 1   MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADK-PDLILLDIMMPG 58

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +      + ++  P   D+ + ++   +  E+ I G   GA  +L KP +   +R  ++ 
Sbjct: 59  MDGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKN 118

Query: 117 LPQMQKSKDENQFLDA 132
             ++++ +D  + L +
Sbjct: 119 HLELKRYRDLLETLAS 134


>gi|153004813|ref|YP_001379138.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028386|gb|ABS26154.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. Fw109-5]
          Length = 470

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +R+V   +    G+ V  A    +A     K  + + +V D  M   G
Sbjct: 1   MPHVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHKTPV-HVVVTDLVMPKVG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +   R      DV V  +      +  +   +AGA  ++ KPF ++ L+  + +  
Sbjct: 60  GMELLR--RVGADFPDVPVIMITAHGSVDSAVGALKAGAFDYITKPFEQDELKKVIAKAA 117

Query: 119 QMQKSKDEN 127
           +    + +N
Sbjct: 118 RAHDLERQN 126


>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL + +              G+ +  A +  +A +   +E  P+ +++D  M G+    
Sbjct: 835 ILLAEDNQANIDTISSYLESRGYEMVLAENGQQALD-FAREKCPDLIIMDIQMPGMNGLE 893

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +R      D+ +  L              AGAN +L KP   + L   +++L +  
Sbjct: 894 AIRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVLTIQQLLKNH 953

Query: 122 K 122
           +
Sbjct: 954 Q 954



 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFND---FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           ++LL+D     R            + + + E +   EA  +C  E  P  +++D +    
Sbjct: 8   TVLLIDKCSEERANMTRHLQQDSLYNYQIIEFSIAKEALNWCL-EKTPEIILLDFASVNE 66

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRE 116
               F+  +R     +   V  L+   D +  +   ++GA  +L+K     E L+  +R 
Sbjct: 67  NASIFLEKLRSRLSNSQFTVILLIKPGDEDLAVRAMKSGAQDYLIKNQITPEILQRVIRH 126

Query: 117 LPQMQKSKDENQFLDA 132
             +      +     A
Sbjct: 127 GMEKMYLMQQLAQTKA 142


>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 270

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R      GF V  A +  EA      +  P+ L++D  +     F
Sbjct: 22  RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAAD-QPDLLILDVMLPDADGF 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +V V YL         I G   G + ++ KPF  E L   +R + +  +
Sbjct: 81  EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              L+VD   ++ K  +        +V  A    EA +        + +++D  +  +  
Sbjct: 3   KKALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEY-DIILLDVMLPIMTG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    ++V +  L  + D    I G   GA+ ++ KPFN   ++  ++ + +
Sbjct: 62  FEVCQQIRE---FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E  PN +V+D  +  +    
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRF-RETNPNLVVLDLMLPVMDGIE 67

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++V +  L  +   E  + G  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 68  VA-RRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +R     L   + F V  A +  +A      + LP  ++ D  M  +  
Sbjct: 621 TKILVVDDNADMRAYLTRLLAPY-FTVSTAVNGADAIRQLATD-LPQLILSDIMMPVMDG 678

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  V+Q P+   + + +L      E  I G  AGA+ +L+KPF+   L   +R    
Sbjct: 679 KELLRRVKQNPVTAPIPLIFLSARAGQEARIDGLEAGADDYLVKPFSSLELLTKIRAQIN 738

Query: 120 MQKSKDENQ-FLDAI 133
           + +++ + +  L ++
Sbjct: 739 LNQTRRQGETRLRSL 753


>gi|255035713|ref|YP_003086334.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948469|gb|ACT93169.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1278

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            +++L+++ +  +R   R LF +  + + EA +     E   +E +P+ ++ D  M     
Sbjct: 1027 NTILIIEDNDQLRVFIRELFEET-YNILEAGNGLRGVELA-QEKIPDIILSDVMMPEISG 1084

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            LE    +++    + + V  L      E++I G  AGA+ +L+KPF+   L   +  L +
Sbjct: 1085 LEVCNRLKKSDTTSHIPVVLLTARTQSEQVIEGLTAGADDYLVKPFDPRILEIKINNLLR 1144

Query: 120  MQKSKD 125
            +++   
Sbjct: 1145 VREQMK 1150


>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 225

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA E  + E  P+ L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEK-QSEFNPDLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G++ ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQM-QKSKDEN 127
            +  + ++ EN
Sbjct: 117 LKRVKGNQREN 127


>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G+ V    +  EA +   ++ LP  +++D  +     L
Sbjct: 7   TILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWD-FIQQRLPQLILLDWMLPDQSGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R      ++ +  L  +   E  IAG   GA+ ++ KPF+   L   +  L + 
Sbjct: 66  RLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|114569317|ref|YP_755997.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339779|gb|ABI65059.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 233

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R + +    + GF V  A +  +A       L  + LV+D  M G+  F 
Sbjct: 11  ILVVDDDDRIRNLLKRFLQERGFRVSTAPNAGKALSTL-NSLAFDLLVLDVMMPGMNGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+        +  L    D E  I G   GA+ +L KPF  E L   +  + +  
Sbjct: 70  LTEAVRKRGE---TPILLLTARGDAEDRIKGLSLGADDYLPKPFEPEELVLRINAILRRA 126

Query: 122 K 122
           +
Sbjct: 127 R 127


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+          +L    G+ V  A    +A    ++    + +++D  + G  
Sbjct: 1   MTRILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGA-DLVLLDLMLPGVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R   + + V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRELR---VKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
 gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD++LLVD    +  V R      GF V  A +   A +  + E + + LV+D  M  + 
Sbjct: 1   MDTILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHV-DLLVVDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +    L  D    YL      ++ + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 60  GHTLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRR 119

Query: 121 QKSKDENQFLD 131
            K   E + L 
Sbjct: 120 SKRSSEPETLK 130


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +      L    GF    A     A    ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGA-DIVLLDLMLPGMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GNDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVL 116

Query: 119 QMQKSKD 125
           +  +  D
Sbjct: 117 RRGQEAD 123


>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 237

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + KV  +     GF V  A     A     +E  P  +V+D  + G   L
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSV-REFEPALIVLDLMLPGFDGL 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D +V  L    D    + G  AGA+ +++KPF    L   ++ L + 
Sbjct: 72  EVCRRIR---TFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128

Query: 121 QKSKD 125
            ++  
Sbjct: 129 PRASS 133


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
 gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
          Length = 244

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 70  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 129

Query: 123 SK 124
           ++
Sbjct: 130 NE 131


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A    + +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPY-DLVLLDLGLPKRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRTLRTR--GHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKDE 126
           Q  + E
Sbjct: 119 QSGRSE 124


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    + K+       +GF V  A++  E  E    E   + +++D  +  +  F
Sbjct: 6   RLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAE-AFDLVLVDLMLPELDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +    ++ +  +    + E  + G   GA+ ++ KPF+ E L   +    +  +
Sbjct: 65  T-LLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYR 123

Query: 123 SKD 125
              
Sbjct: 124 RYQ 126


>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 299

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+VD    +  +      +  F+V++     EA  F EKE L +  ++D  M   
Sbjct: 69  MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEEL-DLALLDIMMPKI 127

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    +R+        +  L  +      I G   GA+ ++ KPF    +   ++  
Sbjct: 128 SGLELCKKIRERYNY---PIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQ 184

Query: 118 PQMQK 122
            +  K
Sbjct: 185 LRRYK 189


>gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 279

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     +E  P+ +V+D ++  +   
Sbjct: 54  RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEA-REFQPDAVVLDVALPDMDGL 112

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 113 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 172

Query: 123 SKDENQ 128
           +    +
Sbjct: 173 AASAAR 178


>gi|148240222|ref|YP_001225609.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848761|emb|CAK24312.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 246

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +  + +      G+ V  A+          +   P+ +V+D ++     +
Sbjct: 10  RILLVDDEARLTDLLKMELEVEGYDVVVASDGASGLFHARETPGPDLIVLDWNLPDFSGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    +  L    D    +    AG + +L+KPF+ E L   +R + + 
Sbjct: 70  DICQRIRT--SGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRR 127


>gi|295085864|emb|CBK67387.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1317

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 1128 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187

Query: 122  KSKD 125
                
Sbjct: 1188 MLLK 1191


>gi|284050274|ref|ZP_06380484.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
 gi|291568236|dbj|BAI90508.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 579

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++   +VR+    L     F V EAT      +  E+E  P+ ++ D  M    
Sbjct: 1   MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQEH-PDLILCDVMMPILD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +A +RQ P    +   ++    D          GA+ ++ KP +   L  ++    
Sbjct: 60  GYGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSITVRL 119

Query: 119 QMQKSKDE 126
           +   +  +
Sbjct: 120 EKHSNMQQ 127


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DLALLDVMLPGID 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 63  GFQVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122

Query: 121 QKSKDE 126
            +  DE
Sbjct: 123 IEVHDE 128


>gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1420

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +R   R +  +  + V EA +  EA          ++++ D  M  +   
Sbjct: 1168 SILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNP-IDFIISDLMMPVMDGI 1225

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V++    + +    L  +   E  +   R G + +LLKPF+   L   ++ + + 
Sbjct: 1226 ELSRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLARIQNILEN 1285

Query: 121  QKSKDENQFLD 131
            +K       LD
Sbjct: 1286 RKRYQRKFTLD 1296


>gi|17229799|ref|NP_486347.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131399|dbj|BAB74006.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 470

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +    ++   +    GF V +A +   A   C+  LLP+ +++D SM  +   
Sbjct: 12  NILVVDDTPDNLRLLSAMLTARGFEVRKALNGKMALTACQM-LLPDVILLDVSMPDMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     +D+ V ++    D    +     G   ++ KPF+   +   +     +
Sbjct: 71  QVCQQLKADEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQINL 130

Query: 121 QKSKDENQ 128
           +  + + +
Sbjct: 131 RLLQLQLK 138


>gi|302539959|ref|ZP_07292301.1| sensor histidine kinase/response regulator [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457577|gb|EFL20670.1| sensor histidine kinase/response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 1149

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+ D +  VR     L       V  A     A +      + + ++ D  M      
Sbjct: 642 RLLVADDNADVRSYLGDLLGRE-HDVLLAADGRAALDTALAHPV-DLVLTDVMMPRLDGF 699

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P  T + +  L      E  + G  AGA+ +L KPF+   L   +    ++
Sbjct: 700 GLVRALRADPRTTRLPIIMLTARAGEESTVRGLGAGADDYLAKPFSARQLLARVSANLEL 759

Query: 121 QKSKDE 126
            + ++ 
Sbjct: 760 SRLRER 765


>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 230

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA  + E +    ++++D  M  + 
Sbjct: 1   MMDILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFK-FVLLDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R     ++V +  +        +I G + G++ ++ KPF+   L   +  + + 
Sbjct: 60  GWETCNRIRS-FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRR 118

Query: 121 QKSKDENQ 128
               ++ +
Sbjct: 119 SNQHEQLR 126


>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
 gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|197122377|ref|YP_002134328.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|220917159|ref|YP_002492463.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172226|gb|ACG73199.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. K]
 gi|219955013|gb|ACL65397.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 473

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +R+V   +    G+ V  A    +A     +  + + +V D  M   G
Sbjct: 1   MAHVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPV-HVVVTDLVMPRVG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +   R      DV V  +      +  +A  +AGA  ++ KPF +E L+  + +  
Sbjct: 60  GMELLR--RVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQEELKKVIAKAA 117

Query: 119 QMQKSKDEN 127
           +    + +N
Sbjct: 118 RAHDLERQN 126


>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
 gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
           W22703]
          Length = 239

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 227

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+    + ++        GF    A     A+   +  +LP+ +++D  + G   L  
Sbjct: 2   LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDA-MLPDLVLLDWMLPGASGLTL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R  P    V +  L    D    +AG  AGA+ ++ KPF+ + +   +R + + + 
Sbjct: 61  ARRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRRA 120

Query: 123 SKDENQFLDA 132
            +     L+A
Sbjct: 121 PEQAAVTLEA 130


>gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 8   DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIAH 65
           +    +R++ +    +  + +  A++  +A E  +KE LP+ +++D  + G    +    
Sbjct: 2   EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKE-LPDLILLDIMLPGKDGYDVCKE 60

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125
           +R      ++ +  +  + +    I G   GA+ ++ KPF+   L   ++ + +      
Sbjct: 61  IRNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLLQ 120

Query: 126 ENQFL 130
            N  +
Sbjct: 121 NNSRM 125


>gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 232

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    +    +       + V    S  EA +        + +V+D  MEG+  
Sbjct: 4   KKILLVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMM--NNDFDLIVLDIMMEGIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+     DV + ++  +   E  +     G + ++ KPF+ + L+  +    +
Sbjct: 62  MELCRLIRER---VDVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLR 118

Query: 120 MQKSKDENQF 129
            ++    N+ 
Sbjct: 119 REERIRSNER 128


>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 4   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 62

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 63  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 119

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 120 LRRSEEPAPEQL 131


>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
 gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
 gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
 gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D +  +R++   L    G+ V  AT+  EA    +     + +++D  M     
Sbjct: 7   KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADST--IDLIILDVVMPVKTG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F   + +R+    T   + +L  +      + G  AG + +L KPF+   L   ++ L +
Sbjct: 65  FVACSEIREK---TTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLR 121

Query: 120 M----QKSKDENQ 128
                Q  + E +
Sbjct: 122 RYYIYQGKEKEKE 134


>gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697]
 gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697]
          Length = 1348

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD +  +R+      +   F + EA +  +A +  + + + + ++ D  M  +   
Sbjct: 1100 KILVVDDNQELRQYLVSGLSS-DFNLLEADNGQKALDILKGQEV-DLVITDVMMPVMDGV 1157

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + VY L  + D +  + G + GA+ ++ KPF+   L+  ++ + + 
Sbjct: 1158 KLCKAIKQNIRTCHIPVYMLSAKADTKYQLEGLQVGADDYIPKPFSMPILKTKIQNVLRT 1217

Query: 121  Q 121
            +
Sbjct: 1218 R 1218


>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
 gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
 gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 239

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|220915997|ref|YP_002491301.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953851|gb|ACL64235.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 466

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR   R +    G  V EAT    A E    +  P  ++ D  M  +   
Sbjct: 12  RVLVVDDDPGVRYTLREILASEGLEVEEATDGEAALEKLGAQPCP-LVLTDLRMPRLDGM 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +         V  +       + +   +AGA  +  KPF  E L   +R   +  +
Sbjct: 71  ALLRKITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVEALR 130

Query: 123 SKDENQFLD 131
             DEN+ L 
Sbjct: 131 LADENERLA 139


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   +     +         +A +    E+ P+ +++D  + G+  
Sbjct: 16  TRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTF-HEVNPDLVLLDLMLPGLDG 74

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L    D + ++AG  AGA+ ++ KPF  + L   +    +
Sbjct: 75  VEICRLIRSE---SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLR 131

Query: 120 M 120
            
Sbjct: 132 R 132


>gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 233

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL++D       +    F   GF    A +  E      +E   + +V+D  M G+  
Sbjct: 6   RRLLIIDDDVDFVTLLVDYFTLEGFDTVPAHNGPEGLAHLAREP-FDLVVLDVMMPGMSG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +++M   + + V  L    D    I G   GA+ ++ KP     L   +  + + 
Sbjct: 65  V-EVLKKMREKSHIPVLMLTARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRR 122


>gi|260779128|ref|ZP_05888020.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605292|gb|EEX31587.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+ +  V  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MNKILLVEDNREVAGILFDYFESMGMELDYADNGELGLQLALSEN-FDLILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L    + E M+ G   GA+ +L KPF+ E L   M  L + 
Sbjct: 60  GLTVCNKLREAGNNTPVLMLTALDNREDMLKGFEHGADDYLTKPFDLEILEARMHALVKR 119

Query: 121 QKSKDENQFLD 131
            + +  N  L 
Sbjct: 120 YRGQVANTVLS 130


>gi|238026723|ref|YP_002910954.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
 gi|237875917|gb|ACR28250.1| Multi-sensor hybrid histidine kinase [Burkholderia glumae BGR1]
          Length = 1248

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +  +R     L     + V          +   +E  P+ ++ D  M  +  F
Sbjct: 611 RILVADDNADMRHYLNSLLGGA-YRVEAVADGARLLDAARRE-RPDLVLTDVMMPNLDGF 668

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P   +V V  L      E  IA   AG + +L+KPF+   L   +  + + 
Sbjct: 669 AVRGALREDPRLREVPVILLSARAGEEARIAALDAGVDDYLVKPFSARELLARIGAVLER 728

Query: 121 QKSKDE 126
            +   E
Sbjct: 729 DRQIRE 734



 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 24   FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLL 81
             G  V  A S  +A         P+ +++D  + G+        +R MP G D  +  + 
Sbjct: 1153 EGHQVKVAYSALDALALAPS-FEPSAILLDIGLPGMDGHEVARRLRAMPAGRDAQLVAVT 1211

Query: 82   MEVDFEKMIAGARAGANSFLLKPFNRETL 110
                         AG ++ L+KP     L
Sbjct: 1212 GYGQAADRERALAAGFDAHLVKPVAMAQL 1240


>gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72]
 gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72]
          Length = 248

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R++      + GF V          +        + +V+D  + G    
Sbjct: 11  RVLLVDDDARLRELLSRYLQEQGFAVKAVVDAPM-MDRALHREHFDLIVLDLMLPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 70  AICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQ 128


>gi|119512832|ref|ZP_01631899.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
 gi|119462505|gb|EAW43475.1| Putative diguanylate cyclase (GGDEF domain) [Nodularia spumigena
           CCY9414]
          Length = 314

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R   R      G+ + EA +  EA   CE +L P+ +++D  M  +  F 
Sbjct: 14  ILIVDDEQFIRMQLRLALEREGYEIVEAQNGTEALNLCE-QLHPDIILLDAIMPDMDGFE 72

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++ +       V  +    D E +      GA  F+ KP +   LR  ++ L    
Sbjct: 73  CCTRLKSVAFSQCTPVLMITGLDDQESVDRAFEVGAIDFITKPIHWPVLRQRVKRLISQS 132

Query: 122 KSKDENQ 128
           + + + +
Sbjct: 133 QLQKQLE 139


>gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLV+    + ++ +    D GF    A +V EA      E LP  +++D  +       
Sbjct: 8   ILLVEDEPGIAELLQFTLADAGFSSHNAMTVQEA-RLAIAEQLPEIVLLDWMLPDGSGLT 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +   R       + V  L      E  + G  AGA+ ++ KPF+   L   +  L +  
Sbjct: 67  LLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRRN 126

Query: 122 KS 123
           ++
Sbjct: 127 RA 128


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+           L    GF    AT+   A E  ++    + +++D  + G+ 
Sbjct: 1   MTRVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCRSLRSRSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 218

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           +LVD    +  +         ++  +A +  +A E  +KE   + +++D  M  +     
Sbjct: 1   MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKES-FDLVLLDIMMPDMDGWEV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    +D+ +  L      E ++ G R GA+ ++ KPF  E L   M  + +   
Sbjct: 60  CRDIRK---FSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRRSA 116

Query: 123 SKDENQF 129
                +F
Sbjct: 117 PARRIEF 123


>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 373

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++  H +  V R    D G++V  A S         +E  P+ +++D  +     
Sbjct: 4   QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKA-REDHPDLILLDLGLPDFDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R+      + +  L      E+ +     GA+ +L+KPF+ + L   ++   +
Sbjct: 63  GDVVQRLRKNSA---LPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 119

Query: 120 MQKSKD 125
            + S+ 
Sbjct: 120 QRTSES 125


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+LL+D    + ++     +  G+ +  A S  +  E   K    + +++D  M G+  F
Sbjct: 5   SILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQI-KHHHYDLVLLDVMMPGIDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   + V V  L  + +    I G   GA+ +L KP++   L   ++ L +  +
Sbjct: 64  -ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIE 122

Query: 123 SKDENQ 128
             D+NQ
Sbjct: 123 L-DKNQ 127


>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +        G+    A +   A         P+ +++D  +  
Sbjct: 1   MNKLLILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAI-LEASSYNPDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      +R++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDGV-EIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1388

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+VD           +   +G  V  A    +  E        + +++D  M  +  
Sbjct: 1258 RSVLVVDDDVRNVFAITSILEFYGASVDHAPDGRKGIEKLLANPSTDLVLMDVMMPEMDG 1317

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +   A +R M   TD+ +  +  +   +       AGAN ++ KP + + L   ++++ 
Sbjct: 1318 YTTMAAIRAMTRFTDLPIIAVTAKAMPDDRQKCLDAGANEYVTKPVDVDELLARVQDVL 1376


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R +        GF V  A     A +  EK   P+ +V+D  +  +  F 
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEK-TSPDLVVLDVMLPDMDGFT 75

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R         + +L    D    + G   G + ++ KPF  E +   +R + +   +
Sbjct: 76  VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135

Query: 124 KD 125
            +
Sbjct: 136 IE 137


>gi|294777730|ref|ZP_06743178.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448409|gb|EFG16961.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1350

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1208

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1209 RERLRN 1214


>gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +         + V  A     A +  + E  P+ +++D ++     
Sbjct: 4   QKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFD-EFNPDLVILDVNLPDTTG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  ++M   T VFV  L         I G   GA+ ++ KPF    L   +R + + Q
Sbjct: 63  F-ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQ 121

Query: 122 KSKDENQF 129
           +S +E + 
Sbjct: 122 RSVEETEM 129


>gi|265752154|ref|ZP_06087947.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236946|gb|EEZ22416.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1349

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1090 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1147

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1148 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1207

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1208 RERLRN 1213


>gi|237726641|ref|ZP_04557122.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435167|gb|EEO45244.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1350

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1208

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1209 RERLRN 1214


>gi|224537028|ref|ZP_03677567.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521336|gb|EEF90441.1| hypothetical protein BACCELL_01904 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1345

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSL-LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              + L+V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1090 KRIMLIVEDNQDICNYIAESFSD-DFEVKTAANGEQGMEQAL-NSIPDIIVSDIMMPVMN 1147

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1148 GIMMCKILKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1207

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1208 ESRKRLTE 1215


>gi|224367373|ref|YP_002601536.1| putative two-component response regulator receiver protein
           (phosphoserine phosphatase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223690089|gb|ACN13372.1| putative two-component response regulator receiver protein
           (phosphoserine phosphatase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 373

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD + +  K      +  G+ V  A +   A+     E  P+ +++D  M G   F
Sbjct: 8   TILVVDDNLVNLKFMEMTLSKEGYRVITADNGTSAKTIAVAEK-PDLILLDIQMPGGDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +++ P    + V +L    D +  + G   GA  ++ KPF+   +   +    ++
Sbjct: 67  EVIRFLKETPGTCTIPVIFLTNMTDVDSKLKGFDLGAVDYVTKPFHPLEVLARVATHLKL 126

Query: 121 QKS-----KDENQFLDAI 133
             +      ++ + L  I
Sbjct: 127 SIATNSLVANQARRLREI 144


>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 237

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEA--TSVCEAREFCEKELLPNYLVIDESMEG-- 58
            +L+V+    + ++        G+ V +A  T +  A     K+ LPN +++D  + G  
Sbjct: 4   RILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASA---MMKDQLPNMIILDWMLPGKS 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F   +R       + +  L  + +    + G  +GA+ ++ KPF+ + L   +R + 
Sbjct: 61  GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120

Query: 119 QMQ 121
           + Q
Sbjct: 121 RRQ 123


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E  PN +++D  +  +    
Sbjct: 17  ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKF-RETSPNLVILDLMLPVMDGLE 75

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   +++ +  L  +      + G  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 76  VA-RRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 131


>gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV 59
           M  +L+ +    +R+         G+ V +     +A +  E+ E   +  ++D  M G+
Sbjct: 1   MKRVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +       V +  L  +      I+   +GA+ ++ KPF+   L   +  + +
Sbjct: 61  DGMQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 225

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELF-AEHTIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
 gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
          Length = 238

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 16/138 (11%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN----------- 48
           M   LL+V+    +R+  +      GF V    +  +A    ++   P            
Sbjct: 1   MRARLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFA 60

Query: 49  YLVIDESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106
            +V+D  + G   L+    +R         +  +         + G   GA+ +L+KPF 
Sbjct: 61  LVVLDLMLPGLGGLDVCRALRAASNF--TPILVVSARDSETDRVLGLEVGADDYLVKPFG 118

Query: 107 RETLRFAMRELPQMQKSK 124
              L    R L +   S+
Sbjct: 119 MRELVARCRALLRRSASQ 136


>gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    + ++      + G+ VF+AT+  +A     +E   + +++D  M G+ 
Sbjct: 1   MFNVLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEK-IHLVILDIMMPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  +  +      I G   GA+ +++KPF+   L   ++   + 
Sbjct: 60  GLQVCMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118

Query: 121 QKSKDEN 127
               +EN
Sbjct: 119 YVYLNEN 125


>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
          Length = 252

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 19  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 78  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 137

Query: 123 SK 124
           ++
Sbjct: 138 NE 139


>gi|318040692|ref|ZP_07972648.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 246

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + +VD     R++      D G+ V   +S  +     + +  P+ +V+D  + G    
Sbjct: 11  RIWVVDDDPEQRRLLGTYLTDQGYDVRCLSSGEQLMARLDGQ-RPDLVVLDVMLPGDDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G D+ V  L    D    I G   GA+ +L KPF    L   +  + + +
Sbjct: 70  TLLRRLRDGGDDLPVVMLTARGDGVDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRR 128


>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 230

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++        G+    ATS  EA  + E +    ++++D  M  + 
Sbjct: 1   MMDILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFK-FVLLDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R     ++V +  +        +I G + G++ ++ KPF+   L   +  + + 
Sbjct: 60  GWETCNRIRS-FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRR 118

Query: 121 QKSKDENQ 128
               ++ +
Sbjct: 119 SNQHEQLR 126


>gi|152970359|ref|YP_001335468.1| putative transcriptional regulatory protein, C-terminal [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206578894|ref|YP_002238379.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288935358|ref|YP_003439417.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290509408|ref|ZP_06548779.1| two-component system, OmpR family, response regulator [Klebsiella
           sp. 1_1_55]
 gi|150955208|gb|ABR77238.1| putative transcriptional regulatory protein, C-terminal [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|206567952|gb|ACI09728.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288890067|gb|ADC58385.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289778802|gb|EFD86799.1| two-component system, OmpR family, response regulator [Klebsiella
           sp. 1_1_55]
          Length = 246

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G+    A +   A     K    + +V+D  M G     
Sbjct: 7   ILVVDDDRDIRELIVDYLEKSGYRASGAANGK-AMWSVLKNHQIDLIVLDIMMPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P   D+ V  L    D    I G   GA+ +L+KPF    L   ++ + +  
Sbjct: 66  LCRQLRANPQ-QDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 124

Query: 122 KSKDEN 127
           ++   N
Sbjct: 125 RALPPN 130


>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
           'morsitans']
 gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
 gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
 gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
          Length = 239

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A +     E        + L++D  +     L
Sbjct: 2   RILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAY-DLLILDWMLPHISGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQQMRSHDAT--TPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRR 118

Query: 121 QKSKD 125
             + D
Sbjct: 119 SAATD 123


>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
           epidermidis VCU045]
          Length = 219

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +++VD    +  +        G+ V+ A    +A +   +E  P+ +++D  + G   
Sbjct: 3   RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEE-PDIVLLDIMLPGRDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+      + +  L  +      + G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MEVCREVRKKYE---MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLR 118

Query: 120 MQKSKDENQ 128
              S+   +
Sbjct: 119 RHYSQPAQE 127


>gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1326

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +           +D  + +  A +  EA +  EK  + N ++ D  M  +   
Sbjct: 1078 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSV-NIVISDIMMPVMNGT 1135

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++     + + V  L   +  E    G   GA+ +++KPF+ + L+  +R+  +
Sbjct: 1136 ELCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1194


>gi|315921136|ref|ZP_07917376.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695011|gb|EFS31846.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1353

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+V+    +RK+   +F    F ++EA +  +A +  +    P+ ++ D  M G+   
Sbjct: 1094 TLLIVEDDDELRKLLIEIFEPI-FEIYEAKNGEDAFKIAQLNS-PDLILSDVMMPGISGI 1151

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119
               A ++     + + V  L      E  I G   GA+ ++ KPFN   L      L   
Sbjct: 1152 NLCARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLLNN 1211

Query: 120  MQKSKDENQFLD 131
             +K ++  + L+
Sbjct: 1212 RRKLQERYKTLE 1223


>gi|312889259|ref|ZP_07748813.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298136|gb|EFQ75251.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL +       + +      G+ V    +  EA  F + E   +  V+D  M  +  
Sbjct: 3   KHILLAEDDPDFGGILKQYLELAGYQVSWKMNGAEALTFFKTESA-DICVLDVMMPVMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +   +   +   +L      E  + G   GA+ +++KPF  E L   ++ + +  
Sbjct: 62  FTLAEKITGIHPGIPFIFLTARNQKEDRLKGLGLGADDYVVKPFEVEELVLRLKNILKRT 121

Query: 122 K 122
           +
Sbjct: 122 E 122


>gi|293368584|ref|ZP_06615192.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292636381|gb|EFF54865.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1317

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+V+    +RK+   +F    F ++EA +  +A +  +    P+ ++ D  M G+   
Sbjct: 1058 TLLIVEDDDELRKLLIEIFEPI-FEIYEAKNGEDAFKIAQLNS-PDLILSDVMMPGISGI 1115

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119
               A ++     + + V  L      E  I G   GA+ ++ KPFN   L      L   
Sbjct: 1116 NLCARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLLNN 1175

Query: 120  MQKSKDENQFLD 131
             +K ++  + L+
Sbjct: 1176 RRKLQERYKTLE 1187


>gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1336

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +           +D  + +  A +  EA +  EK  + N ++ D  M  +   
Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSV-NIVISDIMMPVMNGT 1145

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++     + + V  L   +  E    G   GA+ +++KPF+ + L+  +R+  +
Sbjct: 1146 ELCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1204


>gi|260172852|ref|ZP_05759264.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1317

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+V+    +RK+   +F    F ++EA +  +A +  +    P+ ++ D  M G+   
Sbjct: 1058 TLLIVEDDDELRKLLIEIFEPI-FEIYEAKNGEDAFKIAQLNS-PDLILSDVMMPGISGI 1115

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119
               A ++     + + V  L      E  I G   GA+ ++ KPFN   L      L   
Sbjct: 1116 NLCARIKSHFDTSHIPVILLTALSSVEHNIKGLNCGADDYITKPFNIRILIAKCINLLNN 1175

Query: 120  MQKSKDENQFLD 131
             +K ++  + L+
Sbjct: 1176 RRKLQERYKTLE 1187


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +         G+      +  +  E    E   + +++D  +    
Sbjct: 1   MSRILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDW-DAILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VRQ+    +  +  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLEVCRRVRQV---KNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116

Query: 119 QMQKSKDEN 127
           +  + ++E 
Sbjct: 117 RRVELENEQ 125


>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
 gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +     F          ARE       P+ +++D  + G+
Sbjct: 1   MKARILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASD-PDLILLDLMLPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R     +DV V  L  + D   ++ G  AGA+ ++ KPF    L   ++  
Sbjct: 60  DGIQVCQQIRAE---SDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKAR 116

Query: 118 PQ 119
            +
Sbjct: 117 LR 118


>gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 457

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CE+    + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KTLSDELRIRA 133



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E   + ++++ + +      
Sbjct: 158 VLLVDGRANSQERIVKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  +   E ++     G N ++++P +   L        + +
Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYNDRLR 282


>gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
 gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
          Length = 1336

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +           +D  + +  A +  EA +  EK  + N ++ D  M  +   
Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSV-NIVISDIMMPVMNGT 1145

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++     + + V  L   +  E    G   GA+ +++KPF+ + L+  +R+  +
Sbjct: 1146 ELCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1204


>gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104]
 gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium 104]
          Length = 226

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    + +  R   +  G+ V  A++   A      E  P+ +++D  +    
Sbjct: 1   MTRVLVIDDEPQILRALRINLSVRGYEVVTASTGAGAL-RAAAEHKPDVVILDLGLPDIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +A +R         V  L    D    +    AGA+ ++ KPF  +     +R   
Sbjct: 60  GIDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAV 116

Query: 119 QMQKSKDENQF 129
           +   +  E + 
Sbjct: 117 RRNTAASEMEQ 127


>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 220

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LLLVD    +R   +    D GF V  A +  E  E  EK   P+ ++ D  M  V    
Sbjct: 5   LLLVDDDPGIRLALQAYLEDEGFGVTTARNAIEGLELAEKH-QPDLVITDIMMPQVDGYR 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R +P      V +L  +      I G R G ++++ KP + E L   +R L    
Sbjct: 64  FLQKLRALPRFRYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLLDRS 123

Query: 122 KS 123
           + 
Sbjct: 124 RQ 125


>gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 227

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  ++ G+ V   ++  EA +  +K   P+ +++D  M
Sbjct: 1   MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKH-QPHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R         + +     +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKV 119

Query: 115 RELPQMQKSKD 125
           + L +  K+++
Sbjct: 120 KALLRRFKNEE 130


>gi|312960966|ref|ZP_07775471.1| two-component response regulator [Pseudomonas fluorescens WH6]
 gi|311284624|gb|EFQ63200.1| two-component response regulator [Pseudomonas fluorescens WH6]
          Length = 413

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    VRK+   L    G+    A+S  EA     ++  P+ +++D  M G+  F
Sbjct: 7   TLLIVDDEPQVRKLLETLLQHEGYQTRSASSGEEALTLVAQQP-PDLILLDVMMPGMDGF 65

Query: 63  IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  +++ +  L    +    ++G   GA  F+ KP     L   +R L ++
Sbjct: 66  EVANRLKSNPATSNIPIIMLSALNEPGARVSGLHTGAEEFINKPVEHIELWLRVRNLLRL 125

Query: 121 QKSKDENQFLDAI 133
           +   D+ +   A+
Sbjct: 126 KSHGDQLKKHSAM 138


>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 3/124 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+ +    +  + +      G+ +  A    +A +    E L   +++D  +  +
Sbjct: 1   MKNRVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEEL-ELIILDIMLPSM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    R     + V +  +  + +    I G   GA+ ++ KPF+   L   ++   +
Sbjct: 60  DGFEICKRVREK-SSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVR 118

Query: 120 MQKS 123
            Q+ 
Sbjct: 119 RQEM 122


>gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  LL+V+    + +         GF+V  A    +  +    E   + +++D  + G+ 
Sbjct: 1   MK-LLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLAL-ERNYDCIILDVILPGMG 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF   +R+  +G+DV +  +    + +  I G + GA+ +L KPF+   L   +R L 
Sbjct: 59  GYEFCRFLRE-EIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALI 117

Query: 119 QMQKSKDE 126
           +  + + E
Sbjct: 118 RRNQLRSE 125


>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 239

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
           ++ D +  +  + +   +  GF    A     A      E  P  +++D  M      E 
Sbjct: 1   MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMF-NEYSPLLILLDVMMPKKDGFEV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    ++V +  +  + +    I G   GA+ +++KPF+   +   +R + +   
Sbjct: 60  CQEIRK---TSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRID 116

Query: 123 SKDENQ 128
             +E++
Sbjct: 117 ISEEDK 122


>gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 236

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L VD +  +R + + L    G+ V EA     A      +   + +++D  M G   
Sbjct: 4   QKILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMV--DDSIDLIILDIMMPGKSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R+      + + +L  +        G   G + +L KPF+   L   ++ L +
Sbjct: 62  LDVCKIIREK---YQMPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSLLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 232

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+ +  L+ D    V  +        G+ V +     EA      +   + +++D  M  
Sbjct: 1   MNRISILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQP-IDLVILDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|167764902|ref|ZP_02437023.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183]
 gi|167697571|gb|EDS14150.1| hypothetical protein BACSTE_03294 [Bacteroides stercoris ATCC 43183]
          Length = 1501

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F    + + EA +  E      K  LP+ ++ D  M        
Sbjct: 1233 LLVEDNSELRIFLRSIFASE-YRIVEAANGMEGLNKALK-FLPDIIISDVMMPEKDGIAM 1290

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  ++ L  Q Q
Sbjct: 1291 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLAQRQ 1350

Query: 122  KSK 124
            K +
Sbjct: 1351 KLQ 1353


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A +   A     ++  P+ +V+D  +  +  F
Sbjct: 27  RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAA-RQFQPDAVVLDVMLPDLDGF 85

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   +   V V +L      E  +AG   G + ++ KPF+ E +   +R L + 
Sbjct: 86  AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 143


>gi|325273090|ref|ZP_08139394.1| histidine kinase [Pseudomonas sp. TJI-51]
 gi|324101779|gb|EGB99321.1| histidine kinase [Pseudomonas sp. TJI-51]
          Length = 305

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  AT   EA    E++   + +++D +M  +  +
Sbjct: 185 RILLVEDNPVNQLVAKGMLAKLGCQVELATQGAEALAALERQP-FDLVLMDCNMPVMDGY 243

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ      + +  L      E+      AG N +L KPF RE L   +
Sbjct: 244 EASRRIRQSGRWPHLPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 297


>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 234

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LL+D   ++R+         GF VF A S  +     ++   P+ +++D ++ G+  
Sbjct: 3   KSILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTP-PDLVLLDINLPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+        V ++         + G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 62  L-DALRRFREEVGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRV 120

Query: 122 KSKDENQ 128
              +E +
Sbjct: 121 SGGEERK 127


>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +  + +      G+ V  A    EA      E  P+ +V+D  +      
Sbjct: 4   KILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAK-SFESYPDLIVLDIMLPKKNGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    ++Q     D  +  L  + D    + G   GA+ +L KPF+   L   ++   + 
Sbjct: 63  DVCKEIQQKL---DTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRR 119

Query: 121 QK 122
            K
Sbjct: 120 AK 121


>gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + +V+    +  + ++  +  GF V  AT          +E  P+ ++ D  M G+ 
Sbjct: 1   MAKIAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREK-PDIIISDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F      +   T   V  L    +    + G   GA+ +L KPF+   L   ++ + + 
Sbjct: 60  GFELTR-TLRTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRR 118

Query: 121 QKSKD 125
            +   
Sbjct: 119 LEMTA 123


>gi|297568325|ref|YP_003689669.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924240|gb|ADH85050.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfurivibrio alkaliphilus AHT2]
          Length = 464

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R+    +  D GF+   A +  +  E  E E + + +++D  M GV  
Sbjct: 7   RRILVVDDEAGIRESMAGILADEGFVALTAENGEQGLELLENEPV-DLVLLDIWMPGVDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   L   + V  +      E  +   R GA  F+ KP + + +  A+    ++ 
Sbjct: 66  MEILGRLRDLYPHLPVIMISGHGTIETAVQATRMGAYDFIEKPLSYDKVILAINNALRLS 125

Query: 122 KSKDEN 127
           + ++EN
Sbjct: 126 RLEEEN 131


>gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 223

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +A S  EA E  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIE-QKKFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +A S  EA E  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIE-QKKFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 232

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+   ++R+  +      G+ V  A    EA E  EK + P+ +++D  + G+   
Sbjct: 9   RILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEK-VHPDAVMLDVMLPGLDGI 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V +  +    D   ++ G  AGA+ ++ KPF+ + L   +R + + 
Sbjct: 68  SVCRRIRE---TSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRR 124


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +  +       FGF V  A    +     + +  P+ +++D  +     
Sbjct: 16  TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADP-PDLVILDVMLPDTDG 74

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR       + +  L    D    I G   GA+ +L KPF    L   ++ + +
Sbjct: 75  LAVCREVRADSR---IPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLR 131

Query: 120 M-QKSKDENQFLDAI 133
              +   E   L A+
Sbjct: 132 RGTRDDAEALRLGAL 146


>gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 229

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A+      E        + L++D  +     L
Sbjct: 2   RILLVDDEEALTAPPHRMLRREGYDVDVASDGQTG-EQLATHQPYDLLILDWMLPERSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VRQ      V V +L      +  + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 61  DLCRSVRQRD--RQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118

Query: 121 QKSKDENQ 128
              ++ ++
Sbjct: 119 SPRQETSE 126


>gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
 gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
          Length = 227

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  +   + +  GF V EA    +  +    E   + +++D  M  + 
Sbjct: 1   MANILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALSAE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++    D  V  L  + +    + G   GA+ +L KPF+   L   ++ + + 
Sbjct: 59  G-IDTLKKLREQWDTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILRR 117

Query: 121 QKSKD 125
             +  
Sbjct: 118 TSATK 122


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +  +      G+ V   ++     E    E   + +++D  +    
Sbjct: 1   MSRILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSED-FDAILLDLMLPEIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R+  +     +  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GIEVCRRIRREKI---TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116

Query: 119 QMQKSKDEN 127
           +    + ++
Sbjct: 117 RRVDLETQD 125


>gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L]
 gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1]
 gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055]
 gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B]
 gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum]
 gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94]
 gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI]
 gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L]
 gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1]
 gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF+A +  E  E  ++E   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEE-IHLVLLDIMMPGMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  +      I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMCRKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120

Query: 121 QKSKDEN 127
               + N
Sbjct: 121 YTQLNPN 127


>gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 229

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L++D    +RK+       +G+ V E     EA     ++L P+ +++D  M G   LE
Sbjct: 5   VLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEA-AKALEQLRPSVVILDIMMPGKDGLE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +A +R     + V V  L  + D    + G   GA+ +L KPFN   L   +R   +  
Sbjct: 64  VLADIR---RASTVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRRH 120

Query: 122 KSKDENQ 128
             +  N+
Sbjct: 121 APEAPNK 127


>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+V+    +  +  +     GF VF A    EA     KE  P  +V+D  + G    
Sbjct: 5   SVLIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIA-KERRPGLIVLDLMIPGADGF 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++      + V  L    +    I G   GA+ +++KPF+   L   +R + + 
Sbjct: 64  EVCRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRR 123


>gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
 gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++ +      G+ V  A    EA E  +K    + ++ D  M  +  
Sbjct: 3   KRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQK-YSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           +        L  D    ++  +      I     GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLIGEVQYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRI 121

Query: 121 QKSKDENQFLD 131
            +S   ++ L 
Sbjct: 122 HRSAGADEKLQ 132


>gi|300787746|ref|YP_003768037.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299797260|gb|ADJ47635.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1361

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  +R     L  D  + V       EA      E  P  ++ D  M     L
Sbjct: 612 RVLVADDNADMRDYLVRLLRD-DYAVTAVRDGVEAFAAACAEP-PELIISDVMMPRLDGL 669

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R  P    V V  L      E  + G  AGA+ +L+KPF+   L   +R   Q+
Sbjct: 670 GLLAELRGDPRTAAVPVLLLSARAGQEAAVDGLAAGADDYLVKPFSARELLARVRTTVQL 729

Query: 121 QKSKDENQF 129
            + + ++  
Sbjct: 730 ARLRTQHAR 738


>gi|300726093|ref|ZP_07059550.1| transcriptional regulatory protein ResD [Prevotella bryantii B14]
 gi|299776563|gb|EFI73116.1| transcriptional regulatory protein ResD [Prevotella bryantii B14]
          Length = 230

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +L+VD    + ++ +      G++V  A S  EA          + L++D  M
Sbjct: 1   MKDESYRILVVDDEEDLCEILKFNLEMEGYIVNTANSAEEALTLDIASY--HLLLLDVMM 58

Query: 57  EGVLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            G+  F     ++       + + +L  +      + G   GA+ ++ KPF+   +   +
Sbjct: 59  GGMSGFALAKQLKSNATTASIPIVFLTAKDTENDTVTGFTLGADDYIAKPFSIREVILRI 118

Query: 115 RELPQMQKSKD 125
           + + +    ++
Sbjct: 119 KAVLRRTAHQN 129


>gi|242280761|ref|YP_002992890.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio salexigens DSM 2638]
 gi|242123655|gb|ACS81351.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio salexigens DSM 2638]
          Length = 303

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD   +   V   L     + V  A +  +A +    +  P+ +++D  M  +   
Sbjct: 6   KILIVDDERLNLNVLSDLLRQ-DYKVVLAKNGNQALDRVNSDNPPDLVLLDVLMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++      D+ V ++           G   GA  ++ KPF+   ++  ++    +
Sbjct: 65  EVLRKIKTSDKSKDIPVVFITALDSEHDEARGLEMGAVDYIRKPFHPPIVKARIKNHLTI 124

Query: 121 QKSKDENQFLDAI 133
            + +   + L  +
Sbjct: 125 ARQRKLLEGLANL 137


>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
 gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
          Length = 229

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+VD    +  +        GF VF+  +  +A ++  +E L +  ++D  +  +
Sbjct: 1   MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERL-DLAILDVMLPDI 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+        V  L    +    I G   GA+ ++ KPFN   L   ++  
Sbjct: 60  SGFTLCGEIRRE---HHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQ 116

Query: 118 PQMQKSKDENQF 129
            +     +EN  
Sbjct: 117 LRRYTHYNENDR 128


>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
 gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
           pseudotuberculosis IP 31758]
 gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
 gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
 gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
 gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
 gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
 gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
 gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
 gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
 gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
 gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
 gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
 gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
 gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ ++     G+ V  A+S  EA    EKE  PN +V+D  M  +   
Sbjct: 5   KILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKE-QPNLIVLDIMMPKIDGV 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P      + +L    +    IA    G + ++ KP         ++ L + 
Sbjct: 64  EVCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRR 123

Query: 121 QKSKDENQFLDAI 133
                + + LD I
Sbjct: 124 SDRLPQEEGLDVI 136


>gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           MD +L++D    + ++     +  G+ V    S  +  +   K+  P+ +++D  +  + 
Sbjct: 1   MDRILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDII-KQDKPDLVLLDWMLPKMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R      D+ V  L  +   E  + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GIELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNIL 119

Query: 119 QMQKSKDEN 127
           +    +D N
Sbjct: 120 KRYNKQDSN 128


>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 229

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +  F D G+ +  A++  EA E+C+K+   + +++D  M  +  F
Sbjct: 4   KILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDKD--IDIILLDIMMPNIDGF 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         + +L         I G   G + +++KPF+ + L+  ++   + 
Sbjct: 62  QICQKIR---DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118

Query: 121 QKSKDENQF 129
           +K    N  
Sbjct: 119 EKRVPLNNR 127


>gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
 gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+++    V  + +    + G+  + A          ++      ++ D  +  + 
Sbjct: 1   MNTILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHT-FQLVISDVILPKMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R++     V +  L      +  + G  AGA+ +++KPF+   L   ++ L 
Sbjct: 60  GFELCKEIRKI--NPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLL 117

Query: 119 QM 120
           + 
Sbjct: 118 KR 119


>gi|220906815|ref|YP_002482126.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
 gi|219863426|gb|ACL43765.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Cyanothece sp. PCC 7425]
          Length = 584

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M S+L++D       V        G+ ++ A+S   A    +K   P+ +++D  M  + 
Sbjct: 13  MSSILIIDDDPDNFDVIDTFLAQQGYHLYYASSGRTAIADLDK-FKPDLILLDVMMPDMT 71

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    ++ MP    V +  +      + +     AGA+ F+ KP +   L   +R + 
Sbjct: 72  GIEVCRWIKTMPEWQAVPIIMVTALATKKNLAECFAAGADDFICKPLDSLELIARVRSML 131

Query: 119 QMQKSKDE----NQFLDAI 133
           ++ +  ++    N  L+A+
Sbjct: 132 RIHRQYEQIAAFNLQLEAM 150


>gi|94967535|ref|YP_589583.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549585|gb|ABF39509.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 427

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD S  +  + + L    G++V  A S  EA E       P+ +++D  M G   
Sbjct: 111 QHILVVDDSPELAMLMQELLAAHGYLVQLAYSAAEA-EREIAGRPPDLILLDVQMPGKNG 169

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    ++  P    + +  +    D E  I G  +GA+ FL KP   E L   ++ L +
Sbjct: 170 YDLCRELKDNPETRLIPIVMITGLTDRENRIRGIESGADEFLNKPIFPEELFARVKSLLR 229

Query: 120 MQKSKDENQFLDAI 133
           +++  DE    +A+
Sbjct: 230 LKEFTDELDNAEAV 243


>gi|148257503|ref|YP_001242088.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146409676|gb|ABQ38182.1| putative sensor histidine kinase with multiple PAS/PAC and a
           response regulator receiver domain [Bradyrhizobium sp.
           BTAi1]
          Length = 1202

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL D +  +R   R L     + V       EA         P+ ++ D  M  +   
Sbjct: 613 RILLADDNADMRDYVRRLLEAR-YEVETVGDG-EAALAAMARAKPDLVLSDVMMPRIDGM 670

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A VR  P  + V +  L      E  + G +AGA+ +L+KPF+   L   +    +M
Sbjct: 671 QLLARVRADPKVSTVPIILLSARAGEESRVEGMQAGADDYLIKPFSASELLARVEAHLKM 730

Query: 121 QKSKDE 126
            + + E
Sbjct: 731 AQLRAE 736


>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 232

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD   ++ K  R      G  V  A    EA     KE   + +++D  +    
Sbjct: 1   MAKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMA-KETEYDIVLLDVMLPKFD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    +++ +  +  +      I G   GA+ ++ KPFN   ++  ++ + 
Sbjct: 60  GFEVCQAIRE---FSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIM 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|218129056|ref|ZP_03457860.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
 gi|217988691|gb|EEC55010.1| hypothetical protein BACEGG_00630 [Bacteroides eggerthii DSM 20697]
          Length = 1458

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+VD +  +  + +    D  F +  A    E  +       P+ +V D+ M  +   
Sbjct: 1199 SVLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHH-PDVVVTDQMMPCMDGM 1256

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119
              +  +R     + + V  L  + D +  I     GAN++++KPF+++ L   + +L  +
Sbjct: 1257 EMLKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1316

Query: 120  MQKSKDEN 127
             ++ +++ 
Sbjct: 1317 RKRFREQM 1324


>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 232

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           ++LLVD    VR+  +      G   V  A++  +A    EK + P+ ++ D  M     
Sbjct: 6   TILLVDDEPSVRESVQAYLEYSGDLTVKVASNATDAWRILEK-ITPDVIISDIMMPEVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R  P    + V +L         I G  +G +++L KPF+ E L   ++ L +
Sbjct: 65  YQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGCDAYLPKPFDPEELEAIVKNLLE 124

Query: 120 MQKSKDE 126
            +K+ ++
Sbjct: 125 RRKTNEK 131


>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
           19977]
 gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
          Length = 225

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   +    GF     +   +A     +EL P+ +++D  + G+  
Sbjct: 3   QRILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAV-RELRPDLVLLDLMLPGMNG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R   +
Sbjct: 62  IDVCRVLRSDSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 620

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ V +A    EA +  +KE   + +++D  M  +  
Sbjct: 3   NTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMILDIMMPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+     ++ +  L  + +    I G   GA+ +L KPFN   L   ++ L +
Sbjct: 62  IEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Salinibacter ruber DSM 13855]
 gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Salinibacter ruber DSM 13855]
          Length = 253

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+ +    +       F   G+ V  AT   +A +        + +++D  +     F
Sbjct: 14  RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G D  V  L ++ + E  + G   GA+ ++ KPF+ + L   +  +    +
Sbjct: 74  EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRSQ 133

Query: 123 S 123
           S
Sbjct: 134 S 134


>gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD    + +  R      G+ V+ A     A +       P+ +++D  +  + 
Sbjct: 1   MASVLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHK-PDLMILDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +  +   + + +  L       + +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  G-IDVIGGVRGWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRR 118

Query: 121 QK 122
            +
Sbjct: 119 AR 120


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+  + +        N  GF    A +  EA    E E  P  +++D  +  +  F
Sbjct: 4   KILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEK-PEVILLDIMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      ++ +  +    +    I G   GA+ +++KPFN   L   ++ + + 
Sbjct: 63  EICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRR 120


>gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+V+    VR   R   +  G  V EA +  EA E        + +V+D  +    
Sbjct: 2   MPKLLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQL---PQADLVVLDWMLPDEP 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +  +  +R+     ++ V  L         + G   GA+ +L KPF+   L   ++ L 
Sbjct: 59  GVRLLERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALL 118

Query: 119 QMQKSKDENQF 129
           +        + 
Sbjct: 119 RRSGKSGRIER 129


>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 209

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 13  VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMP 70
           +R++     ++FG+   EA +  EA +  E     +++V+D  M  +        +R+  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGHSVCKEIRK-- 57

Query: 71  LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
             +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +    +++ + +
Sbjct: 58  -TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEI 116

Query: 131 D 131
            
Sbjct: 117 Q 117


>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 209

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 13  VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMP 70
           +R++     ++FG+   EA +  EA +  E     +++V+D  M  +        +R+  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHY-DFVVLDIMMPEMDGLSVCKEIRK-- 57

Query: 71  LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
             +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +    +++ + +
Sbjct: 58  -TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEI 116

Query: 131 D 131
            
Sbjct: 117 Q 117


>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
 gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
 gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 240

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +VD    + ++   +  + GF          A E     + P+ +++D  + G+ 
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++   ++V +  L  + D   ++AG  AGA+ ++ KPF    L   +R   ++
Sbjct: 60  GTEVA-RRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRI 118

Query: 121 QKSKDEN 127
            K   E+
Sbjct: 119 AKPAAED 125


>gi|85060158|ref|YP_455860.1| DNA-binding transcriptional regulator CpxR [Sodalis glossinidius
           str. 'morsitans']
 gi|84780678|dbj|BAE75455.1| two-component response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 232

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVQVAHDGEQALSQLDSSIDLLLLDVMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQQ---QQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLDA 132
               ++ Q  +A
Sbjct: 118 SHWTEQQQTGEA 129


>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    +R++        G  V  A++  EA E   +   P+ +V+D  M  +  F
Sbjct: 14  KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELF-RGSEPDLVVLDVMMPELDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     ++V +  L    D    I G + GA+ +++KPF+ + L   +R + +   
Sbjct: 73  AVVERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRAN 131

Query: 123 SKD 125
           +  
Sbjct: 132 TSQ 134


>gi|189465203|ref|ZP_03013988.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM
            17393]
 gi|189437477|gb|EDV06462.1| hypothetical protein BACINT_01548 [Bacteroides intestinalis DSM
            17393]
          Length = 1293

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 62/127 (48%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++L++D +  +  + + + ++  + +  A +  E  E  ++E  PN ++ D  M  +  
Sbjct: 1035 NTILIIDDNKELLWMLKDILSNE-YAILTAENGEEGLELLKQET-PNLIITDIMMPKIDG 1092

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++       + +  L  +   ++ I G  +GA++++ KPFN + LR  +++L +
Sbjct: 1093 ITLTKQLKNNKHTAHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRTIIKQLIK 1152

Query: 120  MQKSKDE 126
             Q+   +
Sbjct: 1153 KQEELKQ 1159


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   +     +         +A +    E+ P+ +++D  + G+  
Sbjct: 3   TRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAF-HEVSPDLVLLDLMLPGLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L    D + ++AG  AGA+ ++ KPF  + L   +    +
Sbjct: 62  VEICRLIRSE---SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V        A     +E  P+ +V+D  +  +   
Sbjct: 21  RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAV-RAAREFRPDAVVLDVMLPDLDGL 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  +AG  AG + ++ KPF+ E L   +R L +   
Sbjct: 80  EVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSG 139

Query: 123 SKDENQ 128
                Q
Sbjct: 140 MTAAQQ 145


>gi|317477946|ref|ZP_07937129.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905860|gb|EFV27631.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 1357

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+V+ +  +R +   +F  F + V  A    E       E +PN +V D  M  +   
Sbjct: 1095 KILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSE-MPNIVVSDVVMPNMSGT 1152

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + V  L      E+ I G R GA+ ++ KPFN   L      L   
Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1212

Query: 121  QKSKDE 126
            +    E
Sbjct: 1213 RILLQE 1218


>gi|270294949|ref|ZP_06201150.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274196|gb|EFA20057.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1357

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+V+ +  +R +   +F  F + V  A    E       E +PN +V D  M  +   
Sbjct: 1095 KILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSE-MPNIVVSDVVMPNMSGT 1152

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + V  L      E+ I G R GA+ ++ KPFN   L      L   
Sbjct: 1153 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1212

Query: 121  QKSKDE 126
            +    E
Sbjct: 1213 RILLQE 1218


>gi|224370342|ref|YP_002604506.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223693059|gb|ACN16342.1| putative two-component hybrid sensor and regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 873

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ + +  ++++         + +F +++   A +  +  + P+ ++ D  M G+  F 
Sbjct: 549 ILIAEDNVGIQELLAIALER--YTLFISSNGQAAWQAID-GIKPDLVISDIMMPGMDGFS 605

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R     + + V  +    + +  I   + GA+ +L KPF+   L+  ++ +  + 
Sbjct: 606 LLERIRTNGKTSTIPVIVITSLTEQDDRIKSLQLGADDYLTKPFHHLELQARVKNVLSLH 665

Query: 122 KSKDENQFLDAI 133
           K + E    + +
Sbjct: 666 KLEREKTRSEQL 677


>gi|160888601|ref|ZP_02069604.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492]
 gi|156861915|gb|EDO55346.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492]
          Length = 1343

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+V+ +  +R +   +F  F + V  A    E       E +PN +V D  M  +   
Sbjct: 1081 KILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSE-MPNIVVSDVVMPNMSGT 1138

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + V  L      E+ I G R GA+ ++ KPFN   L      L   
Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1198

Query: 121  QKSKDE 126
            +    E
Sbjct: 1199 RILLQE 1204


>gi|90581397|ref|ZP_01237192.1| osmolarity response regulator [Vibrio angustum S14]
 gi|90437374|gb|EAS62570.1| osmolarity response regulator [Vibrio angustum S14]
          Length = 239

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLARETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|317152847|ref|YP_004120895.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943098|gb|ADU62149.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 1150

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 2/127 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD   +  +V   + N  G     A +   A    E    P+ +++D  M  +    
Sbjct: 715 VLVVDDEPVNLQVVAAILNIEGISFRTAANGAMALRMLEDGDQPDMVLLDVMMPDMSGYA 774

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    + + +  L ++   E ++ G  AGAN +L KPF RE L   +    +++
Sbjct: 775 VCRELRKTYQASVLPIVLLTVKNRVEDIVEGFSAGANDYLTKPFAREELGARVALQIKLK 834

Query: 122 KSKDENQ 128
            + +  +
Sbjct: 835 AAYEILE 841


>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   S+L+ D    + ++        G+ V +AT   EA     +    + +++D  M  
Sbjct: 1   MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAV-LIIQSQPIDLVILDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  +    RQ+ +  ++ + +L  +      + G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGYEVT-RQIRVKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|218779221|ref|YP_002430539.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfatibacillum alkenivorans AK-01]
 gi|218760605|gb|ACL03071.1| Two-component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfatibacillum alkenivorans AK-01]
          Length = 466

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+    +    G+ V  A    EA    +K    + L+ D  +  +   
Sbjct: 8   KILIVDDELGMREFLGLMLERDGYEVSTAGGGREALGLLKKHSY-DLLLCDIRLGDISGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                 M L     V  +      E  +     GA  ++ KPF+ + LR  +    + + 
Sbjct: 67  EVLRMAMGLNPKPVVIMISAFSSTESAVKAMNEGAFDYIPKPFDNDELRGTIANALERKT 126

Query: 123 SKDENQFLDA 132
            + E Q L+ 
Sbjct: 127 LEREKQILEE 136


>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 247

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A +  +A      E  P+ +V+D  +     F
Sbjct: 16  RVLVVDDEPNILELLTAALRLSGFEVRGAATGADAL-RAASEFGPDIVVLDVMLPDQDGF 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L      E  IAG  AG + ++ KPF+ + +   +R + +  +
Sbjct: 75  SVARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVR 134


>gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
           8106]
 gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
           8106]
          Length = 753

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD   +  K      +   + V  A +   A E    +  P  +V+D  M  +    
Sbjct: 11  VLVVDDYPLNLKFLCASLSRAKYEVLVAQTGESALEIAVSQ-QPELIVLDIRMPEMDGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+  D+ V ++    + +  + G + GA  ++ KP + E     ++    ++
Sbjct: 70  VCRQLKASPVTRDIPVIFMTALSETDNKVKGLKLGAADYITKPIHPEEALSRIQTHLSVR 129

Query: 122 KS 123
           + 
Sbjct: 130 RL 131


>gi|222056452|ref|YP_002538814.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221565741|gb|ACM21713.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. FRC-32]
          Length = 457

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD    +R+    L    G+ V +  S   A    +     + ++ D +M G+   
Sbjct: 4   TIMVVDDEQSMREFLVILLEREGYAVQQCESAACALSLLQSSG-FDLVISDVNMPGLNGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  V  +      E+ +   + GA  ++ KPF  E ++  ++   +   
Sbjct: 63  ELLERIKSTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEKSS 122

Query: 123 SKDENQFLD 131
            + EN+ L 
Sbjct: 123 LQKENRRLK 131


>gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400]
 gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 241

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V  A +  +  +   +    + LV+D  + G    
Sbjct: 7   KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQ-MDRLLERENFHLLVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ      + +  L  + D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 66  SICRRLRQQEN--PIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRR 123

Query: 121 Q 121
           Q
Sbjct: 124 Q 124


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    E  E   +   P+ L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG--PDVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115

Query: 119 QMQKSKD 125
           +  K K+
Sbjct: 116 RRVKKKE 122


>gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. 2_1_7]
          Length = 1359

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL+VD +   R+  +   +   + V  A    +A +   +E LP+ ++ D  M     +
Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1169

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  + G  AGA+ ++ KPFN E L   +R L +M
Sbjct: 1170 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1229

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1230 KKKMQK 1235


>gi|224540566|ref|ZP_03681105.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517816|gb|EEF86921.1| hypothetical protein BACCELL_05480 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1337

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R+  R+  +D  + +   +   +A E   KE +PN ++ D  M  +   
Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYNIQVCSDGKQALEIV-KEYMPNMIISDIMMPEMRGD 1135

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L    +   +I G + GA+ +++KPFN   LR  +  +   
Sbjct: 1136 ELCHVLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATISNILTN 1195

Query: 121  QKSKD 125
            +    
Sbjct: 1196 RSLLR 1200


>gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
 gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response
           regulator domains) protein [Hoeflea phototrophica
           DFL-43]
          Length = 457

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   C+ +   + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLMAEYFEVLTAADGMTALSICD-QTQVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + V  +         + G +AGA+ FL KP N   L   ++ L + 
Sbjct: 63  EVCERLKRNPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMTRVKSLVRF 122

Query: 121 QKSKDENQFLDA 132
           +   DE +    
Sbjct: 123 KALSDELRLRAE 134



 Score = 62.1 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLEF 62
           +LLV++    +       N     +        A  E  EK      +         L  
Sbjct: 158 VLLVENRANAQDRMGRALNGV-AEITVIGDPQAALFEAAEKPYELIIVSSALEDYDPLRL 216

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R +     + V  +  + +   +I     G N +L++P +   L        + ++
Sbjct: 217 CSQLRSLERTRFIPVLVVAEQGEENLVIRALELGVNDYLVRPLDPNELVARSVTQIRRKR 276

Query: 123 SKD 125
             D
Sbjct: 277 YTD 279


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++V+    + +V         +      +  +A    E E   + +++D  +  + 
Sbjct: 1   MSKIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDW-DLVLLDVMIPCLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 R     +   V  L         + G   GAN ++ KPFN E L   +R   +
Sbjct: 60  GLEVLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALR 118


>gi|189424183|ref|YP_001951360.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
 gi|189420442|gb|ACD94840.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
          Length = 452

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD       V R     F + +  A     A +  +    P+ +++D  M G    E
Sbjct: 18  ILVVDDDANNLAVVRDCLVAFNYTILVAEDGESAVKRADYA-RPDLILLDVMMPGIDGYE 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++ +     + V ++    +    + G  AGA  ++ KPF RE L   +      +
Sbjct: 77  TCRRLKALKSTHAIPVLFMTALAETGNKVKGLEAGAVDYITKPFQREELLARIAVHLHNR 136

Query: 122 KSKDENQFLDAI 133
           +     Q    +
Sbjct: 137 ELTKRLQEAKEL 148


>gi|117620336|ref|YP_857562.1| two-component hybrid sensor and regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561743|gb|ABK38691.1| two-component hybrid sensor and regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 376

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     R + R L  + G+ V EAT   +A +    E  P+ +++D +M  + 
Sbjct: 1   MSEILIVDDMASNRYILRSLLEEAGYRVREATDGLQAVDTA-TEFPPDLVLMDINMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++Q+P    + V ++        +    +AG   ++ KPF++  +   ++   
Sbjct: 60  GYEACRRIKQLPGQWCLPVLFISTNSGIGALEQAFQAGGCDYVSKPFHQLEVLARVQNQL 119

Query: 119 QMQKSKDEN 127
           ++++   + 
Sbjct: 120 RLKELGRQQ 128


>gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R++ +       +++ EA +  +A +   +    + +++D  +  +    
Sbjct: 8   LLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDY-DLILLDLMLPKMDGIQ 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A  +      +  +  L  + +    I G   GA+ +++KPF+   +   +  + +  +S
Sbjct: 67  AAEKIRES-KNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125

Query: 124 KDENQ 128
               +
Sbjct: 126 GKPKE 130


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +    +    + GF+V  A    EA          + +++D  +      
Sbjct: 9   RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAI-RLSSSNPYDVIILDVLLPIKNGF 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  + +R    G    V  L      ++ + G   GA+ +L+KPF  + L   +  L + 
Sbjct: 68  EVCSELRA--SGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRR 125

Query: 121 QK 122
            +
Sbjct: 126 PR 127


>gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 241

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++     +  GF V  A S  E  +   +      +V+D  M G     
Sbjct: 14  ILVVDDDFDLRELISGFLSQNGFEVHTAASGRE-MDKVLQRGDIGLVVLDYMMPGEDGLS 72

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G    V  L  + +    I G   GA+ +L KPF+   L   +R + +    
Sbjct: 73  ICKRLNQKG-GPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRRGDG 131

Query: 124 KDENQ 128
           + + +
Sbjct: 132 RGQGE 136


>gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 244

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+ +    +R          G+ V + ++  +A +       L +  ++D  M G+
Sbjct: 1   MKRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +RQ        +  L  +      I     GA+ ++ KPF+   L   +  +
Sbjct: 61  DGSELCRWLRQKSDTMG--IIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAV 118

Query: 118 PQMQKS------KDENQFL 130
            +          +DE + L
Sbjct: 119 YRRVSLSVARPPEDEGRTL 137


>gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
 gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
          Length = 231

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    + +       + G+ VF+A    EA +    E   + +++D  M  + 
Sbjct: 1   MYNILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEE-IHLILMDIMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      ++ +  +  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIKATIKIRQE-KNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRR 118


>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
 gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
 gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
          Length = 239

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|330504532|ref|YP_004381401.1| two component transcription regulator protein [Pseudomonas
           mendocina NK-01]
 gi|328918818|gb|AEB59649.1| two component transcription regulator protein [Pseudomonas
           mendocina NK-01]
          Length = 240

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++     +D G+    A+   E R+  E E L + +V+D  + G     
Sbjct: 7   ILIVDDDPEIRQLLSTYLSDAGYQTCVASQGVEMRKRLE-EQLIDLVVLDLMLPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +++ V  L         I G   GA+ +L KPF+   L   ++ + +  
Sbjct: 66  LCRELRVR---SNIPVIMLTARGTLVDRIVGLEMGADDYLPKPFDPRELLARIKVVLRRT 122

Query: 122 KSKDENQFLDA 132
           +S  +   LD 
Sbjct: 123 QSFPDRARLDE 133


>gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
 gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_19]
          Length = 1359

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL+VD +   R+  +   +   + V  A    +A +   +E LP+ ++ D  M     +
Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1169

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  + G  AGA+ ++ KPFN E L   +R L +M
Sbjct: 1170 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1229

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1230 KKKMQK 1235


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 53/127 (41%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++    + ++  +   + G+ V          E   ++   + +++D  + G+  
Sbjct: 3   QRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQD-FDLILLDLMLPGMNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +    G    V  L  +   E+++ G ++GA+ ++ KPF    L   +  + +  
Sbjct: 62  FEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRS 121

Query: 122 KSKDENQ 128
             K+E +
Sbjct: 122 TGKEERE 128


>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
 gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK+         + V EA +  EA +   ++     +++D  M  + 
Sbjct: 8   MK-ILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPKMD 66

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R+      V +  L  + +    + G   G + ++ KPF+ + L   +  + 
Sbjct: 67  GWEVCAEIRRNSK---VPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAII 123

Query: 119 QMQKSKD 125
           +   SKD
Sbjct: 124 RRVYSKD 130


>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    ++ +   +  + G++V EAT    A E   +E   + +++D  +  +  
Sbjct: 3   KKILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMF-REGNFDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
          Length = 709

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S   A    +++  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGEMALAMVKQQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVATQLKAEKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +  +        G+ V++A +  E     EK    + +++D  M G+   
Sbjct: 6   SILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKN-QIHLVLLDIMMPGMDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 65  QMCKKIRE---TNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRR 121

Query: 121 QKSKDEN 127
               + N
Sbjct: 122 YTQLNPN 128


>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELF-AEHTIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|144897465|emb|CAM74329.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Magnetospirillum gryphiswaldense MSR-1]
          Length = 382

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    KV   L  D  + V  A    +A      E  P+ +++D  M  +    
Sbjct: 9   ILVVDDTPDNLKVMSGLLKDL-YRVKIANGGEKALAIAVSETQPDLILLDIMMPDMDGHE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V +L  + + E    G   GA  ++ KP +   +   +    +++
Sbjct: 68  VCRRLKSDERTRDIPVIFLTAKSEVEDEEIGLSLGAVDYITKPISPPIVMARVAAHLKLK 127

Query: 122 K----SKDENQFLDA 132
                 +D+  +L+A
Sbjct: 128 AGADFLRDKAAYLEA 142


>gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440]
 gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida]
 gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida]
 gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
 gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 256

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKG-QALALQYTPDLVLLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    + + V  L      +  ++G  +GA+ +L KPF+ E L   ++ L + 
Sbjct: 64  LCQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRR 122


>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 4   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 62

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 63  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 119

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 120 LRRSEEPAPEQL 131


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A +  EA    +K    N L++D  M     +
Sbjct: 5   RILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQY-NLLILDLMMPKVDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     T++ +  L  +      + G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 64  EVCRRLRNK---TNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRR 120


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A     A     K+  P+ +++D  M G+  F
Sbjct: 8   RILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLM-KQFQPHVVILDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R +    +V V  L    + +  + G   GA+ +++KPF+ E L   +    + Q
Sbjct: 67  EVC-RMLKKTENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQ 124


>gi|114769510|ref|ZP_01447136.1| Response regulator [alpha proteobacterium HTCC2255]
 gi|114550427|gb|EAU53308.1| Response regulator [alpha proteobacterium HTCC2255]
          Length = 195

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 1   MDS-------LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVID 53
           M +       +L+V+      ++     N  G+ V +A    +      KE   + +++D
Sbjct: 1   MKTYSSNKGLILIVEDEPSQMELLSFNLNAEGYDVLKAEDGEKGL-LLFKENNIDLVLLD 59

Query: 54  ESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
             +     LE    +R+    +D  +  L    + E  + G   GA+ +++KP++ + L 
Sbjct: 60  WMLPNISGLEVCRQMRRSKDSSDCHLIMLTARGEEEDKVRGLDMGADDYIVKPYSIKELL 119

Query: 112 FAMRELPQMQ 121
             +R   +++
Sbjct: 120 ARVRSGIRIR 129


>gi|56694950|ref|YP_165295.1| response regulator [Ruegeria pomeroyi DSS-3]
 gi|56676687|gb|AAV93353.1| response regulator [Ruegeria pomeroyi DSS-3]
          Length = 445

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S + R++       +GF V EA S  EA E C +  +P+ ++ D  M G+  
Sbjct: 41  RRVLVVDDSRLQRRILSSSLKKWGFEVIEAESGEEAMEICARA-MPDLVLSDWVMPGMSG 99

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM----R 115
             F    RQ+      +   L  + +  ++  G  AGA+ FL+KP + + LR  +    R
Sbjct: 100 VDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDFLIKPVSSDELRARISAGDR 159

Query: 116 ELPQMQKSKDENQFLD 131
            +   ++   +N+ ++
Sbjct: 160 VIGMQRELSAKNEVIE 175


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A     A +   +    + +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SIVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LIRR 120


>gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 256

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    T + +  L      +  ++G  +GA+ +L KPF+ E L   ++ L + 
Sbjct: 64  LCQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRR 122


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V  +    +A E        + +V+D  +  + 
Sbjct: 1   MTCVLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGG-IDLIVLDLGLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V  L   VD    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 274

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +  V+    +R++  +      F            +  EK  +P+ +++D  + G  
Sbjct: 47  MPCIYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEK-KIPDLVLLDIMLPGES 105

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R      D+ V  L        ++ G   GA+ ++ KPF    L   +R + 
Sbjct: 106 GIEILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVL 165

Query: 119 QM-QKSKDENQFL 130
           +   + +  ++ L
Sbjct: 166 RRSHRVEKPSEML 178


>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +       F   G+ V  A+      E  ++   P+ +V+D  + G+  
Sbjct: 10  TRVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKR-YAPDVIVLDVMLPGIDG 68

Query: 62  FIAHVRQMPLGTD-VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R        V +  L    D   ++ G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 69  LEVCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRR 128

Query: 121 QKSKDENQFLDAI 133
            +       L A+
Sbjct: 129 HERVS---RLAAV 138


>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
 gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
           z3032]
 gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 239

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  E  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +R+         G  V  A +  +          P  +++D  + G+ 
Sbjct: 1   MPRVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALM-ASFRPELVLLDLMLPGIN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D   ++ G  AGA+ +++KP   E +   ++ + 
Sbjct: 60  GVQVCRRIRES---SQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti]
 gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti]
          Length = 246

 Score =  137 bits (347), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++    F + G+ V  A    E RE  +K+ + + +++D  + G     
Sbjct: 11  ILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPV-DVILLDLMLPGEDGLT 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +   +DV +  L    D    + G   GA+ ++ KPF+   +   +R + + ++ 
Sbjct: 70  LA-RDIRARSDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRRRQP 128

Query: 124 KD 125
           + 
Sbjct: 129 RR 130


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL++    + +      +  G+ V        A      E   +  V+D  +  +   
Sbjct: 2   RLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSET-FDLAVLDLGLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+++ V  L      E  IAG  AGA+ +L+KPF+   L+  +R L +   
Sbjct: 61  QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 123 SKDE 126
            + +
Sbjct: 121 GRAQ 124


>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
 gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
          Length = 223

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++         + V       EA +F       + ++ D  M  V 
Sbjct: 1   MK-ILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDY-DLIITDIMMPNVD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R      +  V  L  +   E  I G  +GA+ +++KPF  + L   +R L + 
Sbjct: 59  GYEFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRR 118


>gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 223

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +A S  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+V+    +R   +   N+ G+ VFEA +  E  E   +E   +  ++D  M  +
Sbjct: 1   MQHNILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNRED-IHLAIVDIMMPVM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      D+ V +L  + +    I G   GA+ ++ KPF    L   +    +
Sbjct: 60  DGITMTMRLRETY-DIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + ++  +  +  G+ V    +  EA E  +K   P+ +++D  M  +   
Sbjct: 7   KILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKK-YKPHLIILDVMMPEMDGI 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++  + +L    +    +AG  AGA+ ++ KP   + L   ++ L + 
Sbjct: 66  EACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125

Query: 121 QKSKDEN 127
            KS DEN
Sbjct: 126 LKS-DEN 131


>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 226

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +    G+  F       A +   K   P+ +++D  + G+   
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAF-KSAAPDLVLLDLMLPGMDGI 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A +R+      V +  L  + D   ++ G  +GA+ +++KPFN + L   +R   +
Sbjct: 63  EICARIREESG---VPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLR 118


>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 240

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    +R++        G+ +       E         +P+ +++D  M G   
Sbjct: 5   QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNE-LRALLDRDVPDLIILDVMMPGEDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                H+R     ++  V +L    +   +I G   G + +L KPFN   L   ++ L +
Sbjct: 64  LSLCRHIRSR---SNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLR 120

Query: 120 MQKSKDE 126
                 E
Sbjct: 121 RATPASE 127


>gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    +R+  R L     + + EA    E       +   + +++D  M G+   
Sbjct: 5   NILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT--DLVILDIMMPGISGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V V +L  +      + G  AG + +L KPF+   L   ++   + 
Sbjct: 63  KTCEEIRK---TSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRR 119

Query: 121 QKSKD 125
                
Sbjct: 120 YHIYR 124


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V  A +  E  E    E   + +++D  +  +  
Sbjct: 3   KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    + ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120

Query: 122 KSKD 125
             + 
Sbjct: 121 DIEA 124


>gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 227

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 5   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 63

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 64  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 120

Query: 119 QMQK 122
           +  K
Sbjct: 121 RRTK 124


>gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD++LLVD    +  V R      GF V  A +   A +  + E + + LV+D  M  + 
Sbjct: 1   MDTILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHV-DLLVVDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +    L  D    YL      ++ + G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 60  GHTLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRR 119

Query: 121 QKSKDENQFLD 131
            K   E + L 
Sbjct: 120 TKRSSEPETLK 130


>gi|297197242|ref|ZP_06914639.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297146642|gb|EFH28254.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1424

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +  +  E        + +++D  M  +  
Sbjct: 1304 RTVLVVDDDARNLFALSGVLELHGFRVLHADNGRKGIEMLLAHPDISVVLMDVMMPEMDG 1363

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R MP   D+ +  +  +           +GAN ++ KP +   L   +R   
Sbjct: 1364 YAATAEIRAMPQYADLPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTGDLIARVRRWL 1422



 Score = 43.3 bits (102), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 23/131 (17%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDF-------------GFMVFEATSVCEAREFCEKELLPN 48
              LL+++     R +   +                 G  +  A    EA      +    
Sbjct: 1143 RRLLVIEERP--RGLLTLVAERAVADLAYDSDDPHGGIDIITAVGAQEAASTLAADPCHC 1200

Query: 49   YLV-IDESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGA----NSFLLK 103
             ++ +    +   +F+  +R       V V              G RA A      FL  
Sbjct: 1201 VVLELGMRHDEGADFLEAMRGDSALDSVPVLIHTGHRVDLVQEQGLRALAGDRPLDFLS- 1259

Query: 104  PFNRETLRFAM 114
              + + LR  +
Sbjct: 1260 --SLDDLRERI 1268


>gi|163855203|ref|YP_001629501.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258931|emb|CAP41230.1| Probable transcriptional regulator [Bordetella petrii]
          Length = 233

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++     N  G+    A    +          P+ LV+D  + G   
Sbjct: 6   TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDAND-LAARIARYAPDLLVLDRMLPGGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    G D+ V  L    +    I G  AGA+ +L KPF+   L   +  + + +
Sbjct: 65  ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124

Query: 122 K 122
           +
Sbjct: 125 R 125


>gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 242

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD   +VR++        GF V    +   A +   ++  P  +V+D  M  +  
Sbjct: 3   QSILVVDDDPVVRELVSGYLQGRGFKVDTLQNGL-ALQRRLQDERPALIVLDIMMPELDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + +
Sbjct: 62  ISALRALRVAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121


>gi|89954507|gb|ABD83655.1| response regulator protein-like [Rickettsia honei]
          Length = 450

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GCEVCKTIKTNPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSGE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISGILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291]
          Length = 224

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 7/126 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD    +  + +  F   G+ V+ A S  ++ +   K   P+ +++D +M     
Sbjct: 3   NKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKISKN--PDIILLDINMPEIDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         + +L   ++    I G RAGA+ +++KPF+ + L   +    +
Sbjct: 61  IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117

Query: 120 MQKSKD 125
            ++ K 
Sbjct: 118 REQRKS 123


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 52/126 (41%), Gaps = 1/126 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LL++    +        +  G+ V  A +  +      + + P+ L++D  +  +    
Sbjct: 5   ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLA-RSIQPDLLILDWMLPTLSGVD 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R    G    +  L  + +    ++G  +GA+ ++ KPF+ E L   ++   +    
Sbjct: 64  ICLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVNP 123

Query: 124 KDENQF 129
           ++ ++ 
Sbjct: 124 EEPDRL 129


>gi|148255684|ref|YP_001240269.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407857|gb|ABQ36363.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains [Bradyrhizobium
            sp. BTAi1]
          Length = 1695

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           +    G  V  AT+  EA +  +     + +++D  M  +  
Sbjct: 1575 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGAEAIDLVQSTPAISIVLMDIMMPQMDG 1634

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               I  +RQ P    + +  L  +           AGA+ +L KP N E L  A+R    
Sbjct: 1635 YQTIGVIRQNPAFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 1694

Query: 120  M 120
             
Sbjct: 1695 R 1695



 Score = 89.5 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 8/131 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+      +V   L  D GF +  AT   EA +   K+  P  + +D  +  +L 
Sbjct: 1307 TTLLIVEDDPHYARVLIDLARDKGFKILVATRGAEALDLA-KQYQPAAISLDVFLPDMLG 1365

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               ++ ++  PL   + V  +      E        GA SF+ KP   E +  A+ ++  
Sbjct: 1366 WTVLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVNKPTTTEGVSAALSQI-- 1420

Query: 120  MQKSKDENQFL 130
             + ++   + L
Sbjct: 1421 KEYAQPRRKRL 1431



 Score = 73.7 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V+ +   +   R L +     +  A +   A E        + +V+D  +  +  
Sbjct: 1429 KRLLIVEDNAAEQLSIRQLLDHDDIEILAADTGAGALEALRGTPC-DCVVLDLRLPDMSG 1487

Query: 62   F--IAHVRQMPLGTDVFVYYLLME--VDFEKMI 90
            F  +  +R     + + V           E   
Sbjct: 1488 FDVLDQLRSDETLSGIPVVVFTGRELSAEEDAE 1520


>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H + ++      + G+    A+   EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++     V +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-TEVLKEVRKDNPVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 AQN 121


>gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 5/115 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    + ++ R+     G+ V    +  EA       + P  +++D  + G
Sbjct: 1   MAKEHILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTA-HSIHPELILLDLMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
              LE    ++Q P  + V +  L  + +   ++ G   GA  ++ KPF+   L 
Sbjct: 60  VDGLEVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLI 114


>gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
 gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family
           [Weeksella virosa DSM 16922]
          Length = 225

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +LLVD    + +   +     GF V  AT+  E  +   K   P+ +++D  M  
Sbjct: 1   MKHYKILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKA-KVFKPHLILMDVMMPQ 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R++    D  + +L    +    +A   AGAN +++KP   + L   ++ 
Sbjct: 60  MDGVEACGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKA 119

Query: 117 LPQMQKSKDE 126
           L ++++  +E
Sbjct: 120 LLKIKQQDEE 129


>gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 222

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIA 64
           V+          ++    GF V  A +   A    ++    + +++D  +  +       
Sbjct: 2   VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGA-DIVLLDLMLPEMSGTEVCR 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
            +RQ    + V +  +         + G   GA+ ++ KP++   L   +R + + Q ++
Sbjct: 61  QLRQR---SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSAE 117

Query: 125 D 125
            
Sbjct: 118 S 118


>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + +       + GF          A     ++  P+ +++D  + 
Sbjct: 1   MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRA-ARFVRQEAPDLVLLDIMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    +R     + + +  L   V+    + G   GA+ ++ KPF+   +   ++
Sbjct: 60  GKDGMEVCKELRS---FSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVK 116

Query: 116 ELPQMQKS-KDENQFL 130
            + +   + ++E++ +
Sbjct: 117 AVLRRSNTPQEESKRI 132


>gi|117928482|ref|YP_873033.1| response regulator receiver modulated diguanylate cyclase
           [Acidothermus cellulolyticus 11B]
 gi|117648945|gb|ABK53047.1| response regulator receiver modulated diguanylate cyclase
           [Acidothermus cellulolyticus 11B]
          Length = 304

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+VD    +R+         G+ V  A     A      + LP+ ++++  + G   +E 
Sbjct: 2   LVVDDDPAMRQFLETNLRLDGYDVLTAADGPMAVAIVATQ-LPDLVLLEVGLPGIDGIEL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R+      + V  +         + G +AGA+ ++ KPF+   L   +R   + 
Sbjct: 61  TRRWREDSRTATLPVIMVTARSSTADRVLGLQAGADDYVTKPFDVAELLARVRSTMRR 118


>gi|148265760|ref|YP_001232466.1| two component, sigma-54 specific, Fis family transcriptional
           regulator [Geobacter uraniireducens Rf4]
 gi|146399260|gb|ABQ27893.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter uraniireducens Rf4]
          Length = 454

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R+V  +   + G+ V  A            E  P  +V D  M G+  F
Sbjct: 4   KILIIDDDTSLRRVLEYNLQEEGYEVVTAADGEAGLALF-AECSPALVVTDLKMPGISGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  +      +  I   + GA  ++ KPFNR+ L+  +++  ++Q 
Sbjct: 63  QVLATIKERSPATLVIVITAFGAIDTAIEAMKLGAYDYITKPFNRDQLKLVVKKALELQG 122

Query: 123 SKDENQFLDA 132
             +EN+ L  
Sbjct: 123 LSEENRLLKE 132


>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
 gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
          Length = 1131

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD   I   + RHL    G+ +  ++   +A     +E + + +++D  M      +
Sbjct: 724 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAEEPV-DLILLDVMMPTLSGFD 782

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ      + V  L      + +  G  AGAN +L+KPF +E L   ++ L + +
Sbjct: 783 VCRRLRQQHPKDMLPVLLLTALNQPKDIEEGFGAGANDYLVKPFCKEELFARVKALLEAK 842

Query: 122 KSKD---ENQFLD 131
             +    EN+ L 
Sbjct: 843 AGRASLVENRLLK 855


>gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + V    +  +A +  +K    +  ++D  +  +  F
Sbjct: 2   NILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTY-DLAILDVMLPDMDGF 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ        +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 61  TICKTIRQKHTW---PIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRR 117

Query: 121 QKSKDENQFLDAI 133
            K  +  Q    +
Sbjct: 118 YKRYNVQQKAQEL 130


>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
 gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
          Length = 248

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 21  MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 80  GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 139


>gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146]
 gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   ++ ++      D G+ V  A          E+    + L++D  + GV  
Sbjct: 10  KRILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGW-DALILDLMLPGVDG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            + G   GA+ +L KPF+   L   ++ L + Q
Sbjct: 69  LDICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQ 128

Query: 122 KSKDENQFLD 131
           ++   N  L+
Sbjct: 129 EAMGRNLMLE 138


>gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1383

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +  +  +   L +   + + +A +  EA E   K+ + + +V D  M  +   
Sbjct: 1133 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1190

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+       + +  L  +   E  + G  +GA+ ++ KP     L   +  L + 
Sbjct: 1191 ELCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1250

Query: 121  QK 122
            +K
Sbjct: 1251 RK 1252


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 1   MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
           M       +LL++    + K+ +       + VF+A    E  E  E E   + +++D  
Sbjct: 1   MKEMNKIKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESED-IDLVLLDLM 59

Query: 56  MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           +  +      ++++   ++V V  +  +V  + ++ G + GA+ ++ KPF+ + L   ++
Sbjct: 60  IPKISG-EDLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIK 118

Query: 116 ELPQMQK 122
            + +  +
Sbjct: 119 TVLRRIE 125


>gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
 gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
           15579]
          Length = 217

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G+ V EA+    A  + E     + +++D  +  + 
Sbjct: 1   MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIE-NTYFDIILLDIMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +     G  + V ++  + D    + G + GA+ ++ KPF    L   +  + + 
Sbjct: 60  GFS--IISKIKGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRR 117

Query: 121 QKSKDE 126
               +E
Sbjct: 118 CGKIEE 123


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    E+    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRSRSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 243

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEG--VL 60
           +L  D    +R+V   +    G+ V  A    EA  + +  +   + +++D  M      
Sbjct: 12  ILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATGY 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +   H+RQ    + V V +L      E  + G   G N +L+KPF+       ++ + + 
Sbjct: 72  DVCKHLRQ---TSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLRR 128


>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD    +R        +    VF+A++  EA +  E+E     +++D  M  
Sbjct: 1   MTKYQVLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLERED-IQLILMDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +    A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   
Sbjct: 60  MDGMTATFQIRQK-KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 11  RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 129 SLTTQQTI 136


>gi|29349208|ref|NP_812711.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341116|gb|AAO78905.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1333

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  VR+  R LF    + V EA +  E      KE LP+ ++ D  M     
Sbjct: 1084 KSLLIIEDNEDVREYIRSLFISR-YAVSEACNGEEGVRIA-KEQLPDLIISDVMMPVKDG 1141

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R       + +  L    +   ++ G  +GA+ +++KPFN E L+  +  L  
Sbjct: 1142 FTCCREIRMQQETAHIPILILTARAEDADILQGCNSGADDYMMKPFNPEILKTKVDNLIL 1201

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1202 QRERLKR 1208


>gi|186685580|ref|YP_001868776.1| response regulator receiver modulated translation initiation factor
           IF-2 [Nostoc punctiforme PCC 73102]
 gi|186468032|gb|ACC83833.1| response regulator receiver modulated translation initiation factor
           IF-2 [Nostoc punctiforme PCC 73102]
          Length = 522

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD       + + +    G+ +  A     A     KE  P+ +++D  M  +   
Sbjct: 258 RILAVDDVADNLILIQTVLESEGYQIDLAADGTTALSLV-KESPPDLIILDVKMPEMDGY 316

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  +        ++ G   GAN F+ KP + + L   +R L ++
Sbjct: 317 EVTRRIRNNHNLPYIPILLISAY-FEASVVQGLDIGANDFIRKPIDVDELLARVRSLLRL 375

Query: 121 QKSKDENQFLD 131
           +K   ++  ++
Sbjct: 376 KKMIGKSDKIE 386


>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
 gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
          Length = 227

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   +      GF V EA S     E   K   P  +++D  + G+ 
Sbjct: 1   MSKILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALK-YNPQVVILDVMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L  +      I G  +G + +L KPFN   L   ++ L + 
Sbjct: 60  GFEVCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRR 119


>gi|325299930|ref|YP_004259847.1| two component transcriptional regulator, AraC family [Bacteroides
           salanitronis DSM 18170]
 gi|324319483|gb|ADY37374.1| two component transcriptional regulator, AraC family [Bacteroides
           salanitronis DSM 18170]
          Length = 915

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  VR   R L     + V EA++  E  +   K  +P+ ++ D  M  +   
Sbjct: 668 TVLVIDDNQDVRDYVRLLLERE-YRVLEASNGQEGLQQAMK-YVPDAIICDVMMPVMDGM 725

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V  L      E+ + G   GA+S++LKPF+ + L+  +R L   
Sbjct: 726 ECCRRLKSEVQTSHIPVMMLTAYTMDEQKVQGYECGADSYILKPFSAKLLQVRLRNLIDN 785

Query: 121 QKSKD 125
           ++   
Sbjct: 786 RRRLQ 790


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +  + +       + V   T   +A E  +K   P+ +++D  + G+ 
Sbjct: 1   MSRILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDK-FKPSLVILDLMLPGMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E   ++R     + + +  L  ++D    + G   GA+ ++ KPF    L   +    
Sbjct: 60  GYEICQNIRIK---STIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSQ 120


>gi|218778777|ref|YP_002430095.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfatibacillum alkenivorans AK-01]
 gi|218760161|gb|ACL02627.1| Two-component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfatibacillum alkenivorans AK-01]
          Length = 452

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +      +  D GF V  A +  EA +   K + P+ +++D  M G+   
Sbjct: 4   SILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSK-ISPDLMLLDIWMPGMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V V  +      E  +   + GA  F+ KP + E +   +      ++
Sbjct: 63  ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122

Query: 123 SKDENQFL 130
            ++EN +L
Sbjct: 123 LEEENLYL 130


>gi|119493837|ref|ZP_01624404.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119452429|gb|EAW33618.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 374

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    VR++   +     F V  A +  E       E LP+ ++ D  M  + 
Sbjct: 1   MKRILVIEDESDVREIILDILEAEEFSVIGAENGKEGVRLAL-EHLPDLVICDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+    + +   +L  +   E +  G   GA+ +L KPF+R+ L  A+    
Sbjct: 60  GYDVLKILREEKTTSTIPFVFLTAKATRENIRQGMNLGADDYLTKPFSRKDLLGAISS-- 117

Query: 119 QMQKSKDENQFLDA 132
           ++QK       + A
Sbjct: 118 RIQKKVAIEDRIQA 131


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++     R+    +    GF V  A +  +  E   +    + +++D  M G  
Sbjct: 1   MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGA-DIVLLDLMMPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ     +V +  +         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVT 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|3377515|gb|AAC28085.1| response regulator [Myxococcus xanthus]
          Length = 509

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R     L     + VFEA +  EA          + L+ D  ME +   
Sbjct: 12  RLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQL-ASGSIDLLLTDLKMEPMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R + +   + V  +      E  +   R GA  ++ KPF    LR+ +    +  +
Sbjct: 71  TLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERAR 130

Query: 123 SKD 125
            + 
Sbjct: 131 LQR 133


>gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 705

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S   A    +++  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    D    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
 gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family
           [Planctomyces brasiliensis DSM 5305]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            S+L+++    +     +     GF V  AT   +     +   LP+ +V+D  +     
Sbjct: 4   QSILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQAS-LPDLIVLDLMLPVTDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R  P    + +  L  + +    I G   GA+ ++ KPF  + L   ++ L +
Sbjct: 63  LEVCRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLR 122

Query: 120 MQKSKDENQ 128
              +K  +Q
Sbjct: 123 RPSAKSNSQ 131


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+ +    +R + +      GF V EA +   A +    +  P+  ++D  M  +  F 
Sbjct: 5   ILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQ-APDMAILDIMMPQLNGFE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R +   +D+ +  L  +      I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 64  LT-RALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRR 119


>gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++ D    +  +  +     G+ V  A    +A +   +E LP+ +++D  M  + 
Sbjct: 1   MK-IMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRW-RESLPDLVILDIQMPKLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    RQM   T+  V  L      +  + G   GA+ +L KPF+   L   ++ + + 
Sbjct: 59  GFEVC-RQMRNETNSMVLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRR 117


>gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 248

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +++V+    V  V         F V E ++  EA      +  P+ +V+D  +  +  F 
Sbjct: 27  VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G+DV V +L    + +  + G  AGA+ +L KPF+ E L   +R + + +  
Sbjct: 87  VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146

Query: 124 KDENQFL 130
             E   L
Sbjct: 147 LTEASAL 153


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|78223656|ref|YP_385403.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Geobacter metallireducens GS-15]
 gi|78194911|gb|ABB32678.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter metallireducens GS-15]
          Length = 461

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+V  +   + G+ V  A S  E     E +  P  +V D  M G+  F
Sbjct: 10  RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFE-DGAPTLVVTDLKMPGMGGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      D  V  +      E  +   +AGA  F+ KPFNRE L+  +R+   MQ 
Sbjct: 69  QLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQG 128

Query: 123 SKDEN 127
              EN
Sbjct: 129 LSREN 133


>gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 244

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+ +    +R          G+ V + ++  +A +       L +  ++D  M G+
Sbjct: 1   MKRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGM 60

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +RQ        +  L  +      I     GA+ ++ KPF+   L   +  +
Sbjct: 61  DGSELCRWLRQKSDTMG--IIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAV 118

Query: 118 PQMQKS------KDENQFL 130
            +          +DE + L
Sbjct: 119 YRRVSLSIARPPEDEGRTL 137


>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 3/113 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLV+   I +K+   L   +G  V  A +   A +   K    + +++D  M  +    
Sbjct: 312 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPY-DLILMDMMMPVMDGLE 370

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              H+R    G  + +  +              AG + ++ KP   E L+  +
Sbjct: 371 ATRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 423


>gi|196230354|ref|ZP_03129216.1| response regulator receiver modulated serine phosphatase
           [Chthoniobacter flavus Ellin428]
 gi|196225284|gb|EDY19792.1| response regulator receiver modulated serine phosphatase
           [Chthoniobacter flavus Ellin428]
          Length = 396

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL D   + R++        GF V +A    E       E LP+ LV+D  M  +   
Sbjct: 19  RVLLADDEAVSRRLLSESLQRSGFEVRQAADGEETLRLATDE-LPDLLVLDFEMPQLDGA 77

Query: 62  -FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R        ++ V  L       + I   +AGAN F+ KP +R+ L   +    
Sbjct: 78  QVCHLLRASDREDLRNLPVIMLTAHAGEVEEIGCLQAGANDFVTKPVSRDVLAARIHTQL 137

Query: 119 QMQKSKDENQF 129
           +++   DE + 
Sbjct: 138 RLRSMADELRQ 148


>gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199]
 gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199]
          Length = 246

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 3/110 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  + R+     GF V +A    EA      E  P+ +++D  +     +E
Sbjct: 19  ILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEAL-LVAAERKPDLILLDWMLPLLSGIE 77

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
               +R++P   +V +  L    +    I G  +GA+ ++ KPF+   L 
Sbjct: 78  VCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELI 127


>gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box
           protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 457

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A     A   CE+    + +++D  M G+  F
Sbjct: 4   RILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERN-QVDLILLDIMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KTLSDELRIRA 133



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVD     ++            V   +    A      E   + ++++ + +      
Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEA-AESAFDLVIVNANFDDYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  +   E ++     G N ++++P +   L        + +
Sbjct: 216 LCSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYNDRLR 282


>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 227

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G ++GA+ +L+KPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRR 119

Query: 121 QK 122
            +
Sbjct: 120 TQ 121


>gi|332093887|gb|EGI98941.1| acetoacetate metabolism regulatory protein atoC [Shigella boydii
           5216-82]
          Length = 299

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
          Length = 239

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 18  MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 77  GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 136

Query: 121 QK 122
            K
Sbjct: 137 SK 138


>gi|296156476|ref|ZP_06839314.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893075|gb|EFG72855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  +      ++  P+ +V+D  M G     
Sbjct: 7   VLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRSVPVVMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +      L    GF      +  +A    ++E   + +++D  + G+ 
Sbjct: 2   MSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGA-DLVLLDVMLPGMS 60

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R++     V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 61  GMEVCRKLREVSS---VPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVL 117

Query: 119 QMQKSK 124
           + + ++
Sbjct: 118 RRRSAE 123


>gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
 gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides sp. D13]
          Length = 1364

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL+VD +   R+  +   +   + V  A    +A +   +E LP+ ++ D  M     +
Sbjct: 1117 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1174

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  + G  AGA+ ++ KPFN E L   +R L +M
Sbjct: 1175 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1234

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1235 KKKMQK 1240


>gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +  V      + G+ V  A     A E    +   +  ++D  + G+   
Sbjct: 2   RILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDGV 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   LG  + +  L    D    ++G  AGA+ +L KPF+ + L   +R L + 
Sbjct: 62  TVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRR 119


>gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  +  G+ VF A +  EA    +K+  P+ +++D  M
Sbjct: 1   MKKKDIKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKH-PHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R  P   +  + +L    +    +AG  AGA+  + KP   + L   +
Sbjct: 60  PEMDGIEACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKV 119

Query: 115 RELPQMQK 122
           + L +  K
Sbjct: 120 KALLRRLK 127


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD    +R   R++  + G+ + EA +  +A  FC ++ +P+ +++D  M  +  F
Sbjct: 926  RVLIVDDDRAMRMALRNVLEEGGYRIEEAVNGEQALAFCRRQ-MPDLVLMDAVMPLLDGF 984

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R MP      V  +    D   +     AGA  ++ KP +   LR  +  L   
Sbjct: 985  KACTQIRDMPGSRHTPVLIITALDDEHSIEQAFSAGATDYIPKPLHFGVLRQRVARLLDA 1044

Query: 121  QKSKDENQFLD 131
             +++     L 
Sbjct: 1045 SRAEKHVHQLA 1055



 Score =  120 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+ + + ++V   +   FG  V  A +  EA +   ++   + +++D  M  +    
Sbjct: 664 ILVVEDNRVNQQVAVGMLKRFGCHVEVAANGQEALDLVARKSY-DLVLMDCHMPRMDGYE 722

Query: 62  FIAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               +R +  G   V +  +   V           G N +L KP     LR  ++
Sbjct: 723 ATRRIRSLEAGKVQVPIIAMTANVREGDSDKCLSVGMNDYLPKPLRLNLLRDKLQ 777



 Score = 67.1 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
            LL+VD S + R+     F+ +G     A +  +A +       +    +  +IDE+M G
Sbjct: 519 RLLIVDDSTVSRRFLEQTFSFWGMYHGSAENGQQALKMLRSAAIQGRAYDLALIDENMPG 578

Query: 59  V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
           +  ++ +  + + P  + V +  +        +      G  +++ KP  +  L  A+
Sbjct: 579 MEGVDLVHRIAESPQISSVKIILM-GRQHQPTVDVSHLPGVVNYIAKPVQQSPLYNAI 635


>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 225

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF     +   +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAF-REAKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LRRSE 121


>gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    VR          G  V    S  EA +   +   P  +++D  + G+ 
Sbjct: 1   MAGILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHI-RSRRPEIVILDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+M     + V  L    D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GVEVCRRIRKMD---QLPVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVL 116

Query: 119 QMQKSKDENQ 128
           +  +S   ++
Sbjct: 117 RRVESVASDR 126


>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTV-DVALLDVMLPGID 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 63  GFQVCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122

Query: 121 QKSKDE 126
            +  DE
Sbjct: 123 IEVHDE 128


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +           G+ V  A     A +   + L P+ +V+D  + G+   
Sbjct: 17  TILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAAR-LRPDAVVLDVMLPGIDGL 75

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L    D   M+ G   GA+ ++ KPF+   L   ++ L +  +
Sbjct: 76  EVTRRIQADHP-TPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVE 134

Query: 123 SKDE 126
              +
Sbjct: 135 RAQQ 138


>gi|197122714|ref|YP_002134665.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
 gi|196172563|gb|ACG73536.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
          Length = 434

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LL+ D     R+V   +     + V  A+   EA +    E  P+ +++D  M      E
Sbjct: 132 LLVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEH-PDLVLLDIGMPRLDGFE 189

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +RQ P   D+ V ++    D    +     GA  +L KPF+   LR  +    ++ 
Sbjct: 190 VLQRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRLV 249

Query: 122 KSKDENQFLD 131
           +S+   + L 
Sbjct: 250 RSQIALRELA 259


>gi|42779728|ref|NP_976975.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217958170|ref|YP_002336714.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137383|ref|ZP_04265995.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229194895|ref|ZP_04321678.1| Two-component response regulator [Bacillus cereus m1293]
 gi|42735645|gb|AAS39583.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|217066134|gb|ACJ80384.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228588599|gb|EEK46634.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228646082|gb|EEL02304.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|324324624|gb|ADY19884.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIVLLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        GF V    S  +      +E  P+ +++D  +  +  F
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEE-PDLIILDVMLPDMNGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    + +L  + D E  I G   G + ++ KPF+ + +   ++ + +   
Sbjct: 65  GVTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124

Query: 123 SKDENQFLDA 132
             DE   + A
Sbjct: 125 QDDEETIIRA 134


>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
 gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
          Length = 226

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +    GF         +A E     + P+ +++D  + G   +
Sbjct: 4   KILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRA-VQPDLVLLDLMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R   + 
Sbjct: 63  DVCREIRAESR---VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRR 119


>gi|297568710|ref|YP_003690054.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924625|gb|ADH85435.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfurivibrio alkaliphilus AHT2]
          Length = 530

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD     R+V        G++V EA +  +A    E     + +++D  M      E
Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETG-AFDLVLLDILMPELDGYE 229

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++   L   V V  +    D   ++    AGA+ +L KPFN   LR  +      +
Sbjct: 230 VLRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSVLLRARVNASLVKK 289

Query: 122 KSKDEN 127
           +  D+ 
Sbjct: 290 RLYDQE 295


>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R      GF V  A +    ++      + + +++D  + G  
Sbjct: 1   MKKVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPV-DLILLDIMLPGED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R      D+ +  +    +    I G   GA+ +++KPF+   L   ++   
Sbjct: 60  GFQVCREIRAE---KDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHI 116

Query: 119 QMQKSKDENQ 128
              +     +
Sbjct: 117 SRYEQLTNRE 126


>gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
 gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|212665861|gb|EEB26433.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
 gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1386

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +  +  +   L +   + + +A +  EA E   K+ + + +V D  M  +   
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1193

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+       + +  L  +   E  + G  +GA+ ++ KP     L   +  L + 
Sbjct: 1194 ELCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253

Query: 121  QK 122
            +K
Sbjct: 1254 RK 1255


>gi|209528218|ref|ZP_03276685.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209491340|gb|EDZ91728.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 372

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L VD S     +   +  D G+ V+       A +    E  P  +++D  M G    
Sbjct: 14  NILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTIL-EKPPQLVLLDVMMPGIDGY 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  +        ++ G  AGA+ F+ KP   + L   +R L ++
Sbjct: 73  EVTRRIRNNPNLPFIPILLITAHDQ-SSVVEGLDAGADDFIRKPVEIDELLARVRSLLRL 131

Query: 121 QKSKDENQFLD 131
           + S DE   + 
Sbjct: 132 KHSIDEQAQMA 142


>gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5]
 gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5]
          Length = 457

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A+   EA + C +    + +++D  M  +  F
Sbjct: 4   RVLVVDDVPANVKLLEARLSAEYFDVVTASCGREALDICRRAEC-DIVLLDVMMPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRQLKSDPRTHFIPVVMVTALDSPADRVRGLDAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDELRMRA 133



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+      +    +  +    V       +A          + L++  ++E     
Sbjct: 157 RILLVEDRPSSYERLAPILAEE-HTVDVEPDPAQALFHAADGNY-DLLIVSLNLENYDGL 214

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
              +  R +    +V +  L    +  +++ G   G N +LL+P ++  L  
Sbjct: 215 RLCSQARSLERTRNVPLLALSNADNNVQLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|153875815|ref|ZP_02003442.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152067721|gb|EDN66558.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 341

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +    KV  ++  +       A S  +A     K  +P+ +++D  M  +  
Sbjct: 4   KLVLVVDDNSENLKVLGNILKEHDLSPAFAQSGFKALTSINK-KIPDLILLDIMMPDMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++Q      + + +L  +V+ + ++ G   GA  ++ KPFN   L   +     
Sbjct: 63  FEVCKRLKQDETTKGIPIIFLTAKVETDDVVTGLELGAVDYVTKPFNSRELMSRVNTHLA 122

Query: 120 MQKSKDENQ 128
           ++ +K+E Q
Sbjct: 123 LKTAKEELQ 131


>gi|94971086|ref|YP_593134.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553136|gb|ABF43060.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 365

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     +   L  D  + V  A     A +  + +  P+ +++D  M  +   
Sbjct: 11  TVLVVDDTPDNLALVGGLLKDL-YRVKVANGGARALKIAQADNPPDLILLDIMMPEMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V +L  +   E    G   GA  ++ KP +   +   ++    +
Sbjct: 70  EVCRQLKADPHTRGIPVIFLTAKSQVEDEQMGFELGAVDYITKPLSPPIVMARVKTHLTL 129

Query: 121 QKS----KDENQFLD 131
           + +    +D+N FL+
Sbjct: 130 KAAADFLRDQNDFLE 144


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    E+    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 246

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+     R +      +    V  AT   E       +   + L++D  + G     
Sbjct: 8   ILVVEDDRETRTLIAKYLRNNSCNVTTATDGRE-MTRIMGDHRIDLLILDVMLPGEDGLT 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R++   + V +  L    +    I G   GA+ +L KPFN   L   +  + + Q +
Sbjct: 67  LC-RKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125


>gi|238783966|ref|ZP_04627982.1| Transcriptional regulator in 2-component system [Yersinia
           bercovieri ATCC 43970]
 gi|238798834|ref|ZP_04642303.1| Transcriptional regulator in 2-component system [Yersinia
           mollaretii ATCC 43969]
 gi|238715074|gb|EEQ07070.1| Transcriptional regulator in 2-component system [Yersinia
           bercovieri ATCC 43970]
 gi|238717342|gb|EEQ09189.1| Transcriptional regulator in 2-component system [Yersinia
           mollaretii ATCC 43969]
          Length = 232

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDIMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 118 SNWSEQQQNVD 128


>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 223

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    + +   H+ +  G+ V  A    +  +   +    + L++D  + G  
Sbjct: 1   MK-ILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTY-DLLILDWMLPGKP 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +R    G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L 
Sbjct: 59  GLSICRELRSR--GKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALL 116

Query: 119 QMQKSKD 125
           +   + +
Sbjct: 117 RRSPALE 123


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+ V +  +  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + + V  L  + D    I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 AE 120


>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 223

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +A S  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 15/143 (10%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+ D    + ++        G+    A     A +  +     +  ++D  M G
Sbjct: 1   MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHS-IDLAILDIMMPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E    +R+     ++ + +L  +      I+G   GA+ ++ KPFN   L   +  
Sbjct: 60  LDGYEVTRLIREQ---HNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNA 116

Query: 117 LPQMQKSKDE-------NQFLDA 132
             +  K  ++       N+ L+A
Sbjct: 117 QLRRFKQLNQPAVAVASNKVLEA 139


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +       + GF V  A     A     KE  P+ +++D  M G+  F
Sbjct: 11  KILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMV-KEHQPHVVILDVMMPGMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R +    +V    L    D E  + G   GA+ +++KPF+ E L   +    +  
Sbjct: 70  EVC-RMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNH 127


>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
 gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + V +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  GL-EVVKIVRKDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
             +  +++
Sbjct: 119 ADNAVQDK 126


>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 225

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+V+  + +RK+         + V+EA +  +A +        N +++D  +  + 
Sbjct: 1   MDKILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNN-FNLIILDLMIPKLS 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + + +  L  +   E  I G   G + ++ KPF+   L+  ++ + 
Sbjct: 59  GEKVCQKIRQS---SQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVL 115

Query: 119 QMQK 122
           +   
Sbjct: 116 RRSN 119


>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 225

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     ++  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RDTKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V V  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     +E +P+ +V+D  +  +   
Sbjct: 24  RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLA-RETVPDVIVLDIMLGDIDGL 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120
               R       V V +L      E  +AG  AG + ++ KPF+ E +   +R L +   
Sbjct: 83  EVLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAG 142

Query: 121 -QKSKDENQF 129
              ++DE + 
Sbjct: 143 ASAARDEARL 152


>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 242

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+++    + +    L    G+ V                     +++D  + G+  
Sbjct: 8   TNILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQY-GLVLLDLMLPGMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +       + +  L  +   + +I G + GA+ ++ KPF+   L   +  + +  
Sbjct: 67  FTVCDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRS 126

Query: 122 KSKDENQ 128
           +   EN+
Sbjct: 127 RQTMENE 133


>gi|189465197|ref|ZP_03013982.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM
            17393]
 gi|189437471|gb|EDV06456.1| hypothetical protein BACINT_01542 [Bacteroides intestinalis DSM
            17393]
          Length = 1357

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L++D +  +  + + + +D  + V  A +  E      K+  P+ ++ D  M  +   
Sbjct: 1100 TILMIDDNKELLWMLKDILSDE-YSVLTAENGEEGLTIL-KQKTPDLIITDIMMPKIDGI 1157

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  ++       + +  L  +   ++ I G  +GA++++ KPFN + L+  +++L + 
Sbjct: 1158 TLIKQLKSNKHTMHIPLVILSAKNTTDEKIEGIESGADAYIPKPFNTQYLKSIIKQLLKK 1217

Query: 121  QKSKDE 126
            Q+   +
Sbjct: 1218 QEELKQ 1223


>gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 243

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+V+    + ++        GF          A+   +  +LP+ +++D  + 
Sbjct: 1   MKHQARILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDA-VLPDAILLDWMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   L    H R+      + +  L    D    +AG  AGA+ ++ KPF+ + L   +R
Sbjct: 60  GQSGLALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119

Query: 116 ELPQMQKSKDEN 127
            + + +  +  N
Sbjct: 120 AVLRRRAPESVN 131


>gi|158318722|ref|YP_001511230.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158114127|gb|ABW16324.1| GAF sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 1159

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+VD           +   +G  V  A +     E  + +   + +++D  M  +  +
Sbjct: 1025 TVLVVDDDVRNVFAITSILELYGLNVIHAENGRRGIEMLQSDPSIDLVLMDVMMPEMDGY 1084

Query: 63   IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R MP   D+ +  +  +   +       AGA  ++ KP + + L   +R   
Sbjct: 1085 TTMTAIRTMPRIADLPIIAVTAKAMPDDRQKCLDAGATDYITKPVDVDELLACIRTRL 1142


>gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2]
          Length = 246

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L++D  + +  +     +  G+ +  +                + +++D  M  +  
Sbjct: 18  QSILIIDDDNELTDMLATYLSSMGYQIQVSNDGQAGLAEATAGGHYDLILLDVMMPKMDG 77

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F   ++++ +     V  L    D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 78  F-DVLKKLRVSHATPVLMLTARGDDYDRILGLELGADDYLPKPFNHRELVARIKAIFRR 135


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          +L    G+ V  A +  +     +K    + +++D  + G  
Sbjct: 1   MSRILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGA-DLVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +RQ      V V  L  +      + G   GA+ ++ KP++   L   ++ + 
Sbjct: 60  GIDVCRALRQRSS---VPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|290473269|ref|YP_003466135.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289172568|emb|CBJ79337.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 239

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +          +++D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANAEQ-MDRLLTRESIQLIILDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ +L+KPFN   L   MR + + Q 
Sbjct: 65  SICRRLRSQHNPIPIIMVSAKGEEVDRIVGLEIGADDYLVKPFNPRELLARMRAVMRRQS 124

Query: 123 SK 124
            +
Sbjct: 125 HE 126


>gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
 gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
          Length = 1356

 Score =  137 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++L+ + +  +R+          + V EAT+  E  E   K+ LP+ ++ D  M      
Sbjct: 1103 TVLVTEDNSELRQFIASELIGT-YRVIEATNGAEGIERAIKQ-LPDLIITDIMMPQTDGF 1160

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E +  +R  P  + + +  L  +   E  + G   G++ +L KPF+ + L   +R +   
Sbjct: 1161 ELVNTLRNNPATSHIPIIILSAKASPESKLKGLEIGSDDYLTKPFSSKELLLKVRNIIGR 1220

Query: 121  QK 122
            ++
Sbjct: 1221 KE 1222


>gi|282898494|ref|ZP_06306484.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Raphidiopsis brookii D9]
 gi|281196660|gb|EFA71566.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Raphidiopsis brookii D9]
          Length = 377

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    ++ + + +     + V   ++  E          P  ++ D  M    
Sbjct: 1   MFQILVIDDDSSIQILLKRILEKQHYQVITTSNGREGILQAVASP-PALIICDWMMPELS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P  +  F   L         + G  +GA+ F+ KP  +  L+  +R   
Sbjct: 60  GLEVCNFIKNHPNLSSTFFILLTSLDSVSDRVKGLDSGADDFISKPIEQNELQARVRAGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + Q
Sbjct: 120 RLHQLNRDLQ 129


>gi|237725777|ref|ZP_04556258.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1386

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +  +  +   L +   + + +A +  EA E   K+ + + +V D  M  +   
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1193

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+       + +  L  +   E  + G  +GA+ ++ KP     L   +  L + 
Sbjct: 1194 ELCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253

Query: 121  QK 122
            +K
Sbjct: 1254 RK 1255


>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  R   N  GF V  A    EA     + + P+ +V+D  +  +   
Sbjct: 6   RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASR-MDPHVVVLDLGLPDMDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +   T V V  L    D    ++   AGA+ ++ KPF  E     +R   + 
Sbjct: 65  TV-LEGLRGWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRR 121


>gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 236

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R+         G++VF+A    E  +  E     +  ++D  M  +   
Sbjct: 5   RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNE-IDLAIVDVMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      D  V +L  + +    I G   GA+ ++ KPF    L   +    +   
Sbjct: 64  TMTAKLREKY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYH 122


>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 229

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +    +  F D G+ V  A++  EA E+C+K+   + +++D  M  +
Sbjct: 1   MQEKILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDKD--IDIILLDIMMPNI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F    ++R         + +L         I G   G + +++KPF+ + L+  ++  
Sbjct: 59  DGFQVCQNIR---DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAH 115

Query: 118 PQMQKSKDENQF 129
            + +K    N  
Sbjct: 116 LRREKRVPLNNR 127


>gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 236

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 9/134 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  LL+VD    V  + +  F   G+ V  AT         E+E +P+ +++D  + G  
Sbjct: 1   MSRLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALERE-VPDLIILDLMLPGDN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +RQ        V  L    +    + G   GA+ +L KPF+   L   +R + 
Sbjct: 60  GLTLCQRLRQQHA---TPVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVL 116

Query: 119 QMQKSKDENQFLDA 132
           +      EN+ + A
Sbjct: 117 RRAG---ENRPVSA 127


>gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1334

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +++V+ +  +R +   LF+   + V+EA    E  E   KE+ P+ ++ D  M  +  +
Sbjct: 1085 KIIIVEDNEELRGLLARLFSRI-YTVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1142

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  + G + GA+ ++ KPFN + L      L   
Sbjct: 1143 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1202

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1203 RKLLQQ 1208


>gi|315921700|ref|ZP_07917940.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695575|gb|EFS32410.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1334

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  ++V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1069 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1127 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1186

Query: 120  MQKSKD 125
             +    
Sbjct: 1187 NRALLR 1192


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 236

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A+   E  +   +E  P+  ++D  M G+  F
Sbjct: 10  KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIA-REFRPDAYILDVMMPGMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D  V YL  +   E  I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 69  ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|238760430|ref|ZP_04621568.1| Transcriptional regulator in 2-component system [Yersinia aldovae
           ATCC 35236]
 gi|238701325|gb|EEP93904.1| Transcriptional regulator in 2-component system [Yersinia aldovae
           ATCC 35236]
          Length = 264

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 33  MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDIMMPRKNGI 92

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 93  ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 149

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 150 SNWSEQQQNVD 160


>gi|167761502|ref|ZP_02433629.1| hypothetical protein CLOSCI_03912 [Clostridium scindens ATCC 35704]
 gi|167661168|gb|EDS05298.1| hypothetical protein CLOSCI_03912 [Clostridium scindens ATCC 35704]
          Length = 232

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLV+    +R V   L     + V +A +   A E       P+ +++D  +
Sbjct: 1   MKNNKYKILLVEDDGNIRTVIAALLETSDYQVIQAETGAMA-ETLFSSYQPDLIILDLGL 59

Query: 57  EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +    FI+ VR+  L     V  L    + +  +     GAN ++ KPF+   L   +
Sbjct: 60  PDMDGMEFISFVRKESL---TPVIVLSARTNDDDKVRALDEGANDYVTKPFSSAELLARV 116

Query: 115 RELPQMQK 122
           R   +  +
Sbjct: 117 RTTLRNYR 124


>gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
 gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
          Length = 235

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +  +      L    G+ V +A    EA    E     + +++D  M  +   
Sbjct: 5   TILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINN-IDLILLDVMMPRLNGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + V  L  + +    ++G   GA+ ++ KP+N   L   ++   +  +
Sbjct: 64  SALMKLRENYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRRYR 122

Query: 123 S 123
           +
Sbjct: 123 A 123


>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
 gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +        G  V  A +  EA     KE   + +V+D  M  +  
Sbjct: 3   KTVLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKF-KENHVDLVVLDIMMPLMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++   ++V +  L    + E  + G + G +S++ KP + + L   ++ L +
Sbjct: 62  WTVCRELRKI---SNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLR 118

Query: 120 MQKSKDENQ 128
                + NQ
Sbjct: 119 RTYYDEINQ 127


>gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 258

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+     R +        G  V  A    E       +   + +++D  +      
Sbjct: 16  SILVVEDDRETRSLIAKYLRANGCHVSAAADGRE-MSRIMADHRVDLIIMDLMLPDEDGL 74

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR     + V +  L    +    I G   GA+ ++ KPFN   L   +  + + 
Sbjct: 75  SLCRKVRAR---SQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR 131

Query: 121 QKS 123
           Q S
Sbjct: 132 QAS 134


>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
 gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+   I+R+V      + G+   EA    +A E      + + +++D  +  V 
Sbjct: 5   MNKVLVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSV-DLVILDIVLPKVD 63

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L    D +  + G   GA+ +L+KP++   L   ++   
Sbjct: 64  GWSVCRRIRRNSG---IPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFL 120

Query: 119 QMQKSKDENQFLDA 132
           +      E   + A
Sbjct: 121 EKTSDTVEEMQISA 134


>gi|317477648|ref|ZP_07936861.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316906188|gb|EFV27929.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 630

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+V+ +  +R     +F   G+ +    +  EA     +E  P+ ++ D  M  +  
Sbjct: 462 QRILIVEDNDDLRNYLVDMF-KAGYNIQSCPNGKEAL-IIIREFNPDLVISDIMMPEMTG 519

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E  + ++     + + V  L    D + M+ G + GA+++++KPF+   L+  ++ +  
Sbjct: 520 DELCSIIKGNLEMSHIPVLLLTALGDEKNMLEGLKTGADAYIIKPFSVGILKATVKNILA 579

Query: 120 MQKSKD 125
            +    
Sbjct: 580 NRALLR 585


>gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R++ R L    G+ V EA +  EA E+       +  ++D  M  +   
Sbjct: 5   RILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYM--NDHIDLYILDIMMPYMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R+    ++  + +L  +   +    G   GA+ +L KPF+   L   ++ + 
Sbjct: 63  ELCEQIRKH---SNAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAML 117


>gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
 gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response
            [Bacteroides sp. 20_3]
          Length = 1369

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL+VD +   R+  +   +   + V  A    +A +   +E LP+ ++ D  M     +
Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1179

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  + G  AGA+ ++ KPFN E L   +R L +M
Sbjct: 1180 TLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1239

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1240 KKKMQK 1245


>gi|237722086|ref|ZP_04552567.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_2_4]
 gi|229448955|gb|EEO54746.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_2_4]
          Length = 1317

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 1127

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 1128 LINKLKSELKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187

Query: 122  KSKD 125
                
Sbjct: 1188 MLLK 1191


>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 239

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ +     R     L    G+ V        A     +    + + +D  M    
Sbjct: 1   MTRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSA-SKMIESKNFDLVCLDVMMPMKS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R         V ++  + D    + G   GA+ ++ KPF    +   ++ + 
Sbjct: 60  GFDVCRLLRAED--HRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
 gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
          Length = 232

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R      GF V  + SV E+ +    + LP+ +++D  +     ++
Sbjct: 5   ILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEES-KILINKQLPDLILLDWMLPQTSGVQ 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R      ++ +  L    +      G   GA+ ++ KPF+   L   +  L + +
Sbjct: 64  FVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALLRRR 123

Query: 122 KSKDENQ--FLDAI 133
             +       L ++
Sbjct: 124 APQKTENIIRLSSL 137


>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 262

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    VR+V        G+ V  A    +A E    E  P+ +V+D  +  +  F 
Sbjct: 22  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNES-PDLVVLDVMLPKLDGFA 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R       V + +L       + +AG   GA+ +L KPF+ + L   +  + + 
Sbjct: 81  VCRRLRAESC---VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 136


>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
 gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
          Length = 239

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   NILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
 gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G ++GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRR 119

Query: 121 QK 122
            +
Sbjct: 120 SQ 121


>gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 231

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +       F V   T          KE   + +++D  +  + 
Sbjct: 1   MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEI-KENKYDLIILDVMLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R +    DV V  +  + +    I G   GA+ ++ KPF+   L   ++   Q 
Sbjct: 60  GF-DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQN 118

Query: 121 QKSKD 125
            +   
Sbjct: 119 YERLK 123


>gi|34580736|ref|ZP_00142216.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
 gi|28262121|gb|EAA25625.1| regulatory components of sensory transduction system [Rickettsia
           sibirica 246]
          Length = 450

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD   +  K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIELNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|332883803|gb|EGK04083.1| hypothetical protein HMPREF9456_01111 [Dysgonomonas mossii DSM 22836]
          Length = 1396

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD +    +    LF D  +    A    E       + LP+ ++ D  M  +    
Sbjct: 1148 LLIVDDNEDFCEFITSLFID-DYRTVIANDGEEGYSIVLDQ-LPDIILCDVMMPKMDGYE 1205

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F  HV+     + + +  L  +   E   +G  AGA+ ++ KPFN + L+  + ++ + Q
Sbjct: 1206 FCRHVKGDIRTSHIPIILLTAKSSEESKYSGIEAGADDYISKPFNIDMLKLKIAKIIERQ 1265

Query: 122  K 122
            K
Sbjct: 1266 K 1266


>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 239

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      + G+    A S  EA            +++D  M  +   
Sbjct: 13  KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG- 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L +  +
Sbjct: 72  IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 131

Query: 123 SKDENQ 128
            + +++
Sbjct: 132 KQVKDE 137


>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
 gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
          Length = 239

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V      D  + V  +    +     E+    + L++D  + GV  
Sbjct: 5   KRILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGW-DALILDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +   +  +DA
Sbjct: 124 DALARDSRIDA 134


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +  ++V++  S  +A   C      +  ++D  + GV  F
Sbjct: 4   KILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALN-CINLNEFDLAILDVMLPGVNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SLCQKIREKYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 228

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +  +      + G+ V    +   A +    +   +  ++D  + G+   
Sbjct: 2   RILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDGV 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   LG  + +  L    D    I G  AGA+ +L KPF+ + L   +R L + 
Sbjct: 62  TVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRR 119


>gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 247

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +R+         G+ VF+A    E     EKE +    ++D  M  +    
Sbjct: 12  ILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVLEKEEIL-LAIVDIMMPRMDGIT 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++      D  V +L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 71  MVIKLREQY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYR 128


>gi|253571369|ref|ZP_04848776.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251839322|gb|EES67406.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1365

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  VR+  R LF    ++V EA +  E      KE LP+ ++ D  M     
Sbjct: 1117 KSLLIIEDNEDVREYIRSLFISR-YVVSEACNGEEGVRIA-KEQLPDLIISDVMMPVKDG 1174

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R       + +  L    +   ++ G  +GA+ +++KPFN E L+  +  L  
Sbjct: 1175 FACCREIRMQQETAHIPILILTARAEDADILQGCNSGADDYMMKPFNPEILKTKVDNLIL 1234

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1235 QRERLKR 1241


>gi|189466788|ref|ZP_03015573.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM
            17393]
 gi|189435052|gb|EDV04037.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM
            17393]
          Length = 1339

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R+  R+  +D  + +   +   +A +   KE +PN ++ D  M  +   
Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYTIQVCSDGKQALDIV-KEYMPNMIISDIMMPEMRGD 1135

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L    +   +I G + GA+ +++KPFN   LR  +  +   
Sbjct: 1136 ELCHKLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATIANILTN 1195

Query: 121  QKSKD 125
            +    
Sbjct: 1196 RSLLR 1200


>gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
 gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM
           17393]
          Length = 229

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTAHSAEEALKM--DIGSYSLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  ++ +  + I
Sbjct: 123 TQQGEQERAPEQI 135


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A+   E  +   +E  P+  ++D  M G+  F
Sbjct: 14  KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIA-REFRPDAYILDVMMPGMDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D  V YL  +   E  I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 73  ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 130


>gi|260063103|ref|YP_003196183.1| two-component system, transcriptional regulatory protein
           [Robiginitalea biformata HTCC2501]
 gi|88784672|gb|EAR15842.1| two-component system, transcriptional regulatory protein
           [Robiginitalea biformata HTCC2501]
          Length = 240

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   F V  A +  E  E  +KE   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNDFDVTLAKNGMEGFEKFKKEP-FDVCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F            + + +L  +   E ++ G +AGA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNDHIPIIFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLVKLKAILQRK 124

Query: 122 KS 123
            S
Sbjct: 125 AS 126


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|218705751|ref|YP_002413270.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           UMN026]
 gi|293405687|ref|ZP_06649679.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           FVEC1412]
 gi|298381369|ref|ZP_06990968.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           FVEC1302]
 gi|300897713|ref|ZP_07116110.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|218432848|emb|CAR13742.1| fused response regulator of ato opeon, in two-component system with
           AtoS: response regulator ; sigma54 interaction protein
           [Escherichia coli UMN026]
 gi|291427895|gb|EFF00922.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           FVEC1412]
 gi|298278811|gb|EFI20325.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           FVEC1302]
 gi|300358553|gb|EFJ74423.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
          Length = 461

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|209518114|ref|ZP_03266943.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501418|gb|EEA01445.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 246

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  +      +   P+ +V+D  + G     
Sbjct: 7   VLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQ-MRAALENGAPDLIVLDLMLPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V +  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRTVPILMLTARNEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
          Length = 226

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +  +        GF V        A +    +   + +++D  +  +  
Sbjct: 3   NNILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQ-AFDAIILDVMLPKLNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++ +       V  L    D    I G   GA+ +L KP N   L   +R + +  
Sbjct: 62  F-EVLKAIREHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRT 120

Query: 122 KSKDENQ 128
           +     +
Sbjct: 121 QKIPTQR 127


>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 224

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++      +   +   + G++V  A +  +       E+  + +++D  M  +  +
Sbjct: 2   RILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLA-NEMRYDLILLDVMMPEMDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + ++++    D  V +L      E  + G   GA+ +L+KPF+   L   +R + +  +
Sbjct: 61  -SVMKKLGARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQ 119

Query: 123 SKDENQFLD 131
            + + + L+
Sbjct: 120 PQKQEERLE 128


>gi|91778395|ref|YP_553603.1| two component LuxR family transcriptional regulator [Burkholderia
           xenovorans LB400]
 gi|91691055|gb|ABE34253.1| two component transcriptional regulator, LuxR family [Burkholderia
           xenovorans LB400]
          Length = 361

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +        G+ V  A     A +   + + P+ +++D  M G+  F 
Sbjct: 23  VLIVDDTPDNLALLSDTLQAAGYAVLVALDGQSALQRLAR-ITPDAVLLDALMPGLDGFE 81

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + V ++    D E ++ G R G   ++ KP     +   +    Q  
Sbjct: 82  TCRRIKADPRNRHLPVIFMTALTDSEHVVQGFRVGGIDYVTKPVKPSEVSARIAAHVQRS 141

Query: 122 KSKDE-NQFLD 131
           + + + ++ L+
Sbjct: 142 RQQRQADRVLE 152


>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
          Length = 369

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  + +A S  EA    +   + + +V+D  M G+  
Sbjct: 137 SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 195

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 196 FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 252

Query: 120 MQKSKDE 126
                 E
Sbjct: 253 RTYQSKE 259


>gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LLLV+    +R +        G+ V  A     A +       P+ +V+D  + G   
Sbjct: 4   RTLLLVEDDREIRSLLADFLGREGYGVLAAEDGA-AMDRLLATTRPDLVVLDLMLPGEDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       + +  L  + D    I G   GA+ +L+KPFN   L   +R + +
Sbjct: 63  LSICRRLRARSG---LPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  137 bits (346), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R        + G  V +A    EA E    E   + +V+D  M  +   
Sbjct: 5   NVLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEML-NEHQVHLIVLDVMMPNLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G + GA+ ++ KPFN   L   ++   + 
Sbjct: 64  SATYKIREK-KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120


>gi|319642790|ref|ZP_07997428.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317385534|gb|EFV66475.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1353

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIRS 1208

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1209 RERLRN 1214


>gi|265753017|ref|ZP_06088586.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
 gi|263236203|gb|EEZ21698.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
          Length = 1331

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    ++           + V  A++  EA +    E   + +V D  M  +  F 
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1141

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L  +V  +  I G   GA+ ++ KPF+ E L   +  L   Q
Sbjct: 1142 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1201

Query: 122  KSKD 125
                
Sbjct: 1202 DKLR 1205


>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
 gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
          Length = 228

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALNDE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-TTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKD 125
            + + 
Sbjct: 118 TQHQS 122


>gi|260173428|ref|ZP_05759840.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1290

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  ++V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1025 RRILIVEDNDELRNYLSQTLSEE-YVVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1082

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1083 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1142

Query: 120  MQKSKD 125
             +    
Sbjct: 1143 NRALLR 1148


>gi|254881403|ref|ZP_05254113.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254834196|gb|EET14505.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1348

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1149 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIRS 1208

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1209 RERLRN 1214


>gi|237711589|ref|ZP_04542070.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
 gi|229454284|gb|EEO60005.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
          Length = 1331

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    ++           + V  A++  EA +    E   + +V D  M  +  F 
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1141

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L  +V  +  I G   GA+ ++ KPF+ E L   +  L   Q
Sbjct: 1142 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1201

Query: 122  KSKD 125
                
Sbjct: 1202 DKLR 1205


>gi|237725951|ref|ZP_04556432.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. D4]
 gi|229435759|gb|EEO45836.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides dorei 5_1_36/D4]
          Length = 1331

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    ++           + V  A++  EA +    E   + +V D  M  +  F 
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1141

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L  +V  +  I G   GA+ ++ KPF+ E L   +  L   Q
Sbjct: 1142 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1201

Query: 122  KSKD 125
                
Sbjct: 1202 DKLR 1205


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++   A +   +  + +  ++D  + G+ 
Sbjct: 4   MPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTV-DVALLDVMLPGMD 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  DE
Sbjct: 121 RRIEVHDE 128


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            L++VD    +R++        GF VF A     A +    +  P+ +V+D  +  +  F
Sbjct: 5   RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLI-TDTTPDLVVLDVMLPDLDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         V +L  + D +  + G   G + ++ KPF+ E +   +R + +   
Sbjct: 64  EVTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTN 123

Query: 123 SK 124
            +
Sbjct: 124 HQ 125


>gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
 gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
          Length = 1334

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +++V+ +  +R +   LF+   + V+EA    E  E   KE+ P+ ++ D  M  +  +
Sbjct: 1085 KIIIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEK-TKEVQPDIVLSDIMMPKMSGI 1142

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L  +   E  + G + GA+ ++ KPFN + L      L   
Sbjct: 1143 EMCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNS 1202

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1203 RKLLQQ 1208


>gi|212695373|ref|ZP_03303501.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855]
 gi|212662102|gb|EEB22676.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855]
          Length = 1389

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    ++           + V  A++  EA +    E   + +V D  M  +  F 
Sbjct: 1142 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVL-SEKTISLIVSDVMMPEMDGFE 1199

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L  +V  +  I G   GA+ ++ KPF+ E L   +  L   Q
Sbjct: 1200 LCHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQ 1259

Query: 122  KSKD 125
                
Sbjct: 1260 DKLR 1263


>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  ++LV+    + +    L    G+ V        A    EK+   + +++D  + G  
Sbjct: 1   MTRIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGT-DLILLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V +  L  +     ++ G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCREIRTRSA---VPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 242

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +  + GF  F      +A E       P+ +++D  + G 
Sbjct: 19  MKARILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGK-PDLVLLDLMLPGI 77

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R     +DV V  L  + D   ++ G  +G + ++ KPF    L   +R  
Sbjct: 78  DGIEVCRLIRAE---SDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRAR 134

Query: 118 PQ 119
            +
Sbjct: 135 LR 136


>gi|149912907|ref|ZP_01901441.1| response regulator [Roseobacter sp. AzwK-3b]
 gi|149813313|gb|EDM73139.1| response regulator [Roseobacter sp. AzwK-3b]
          Length = 422

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S   R++     + +GF V EA     A   C     P+ ++ D  M G+  
Sbjct: 19  RRVLVVDDSPAQRRIVSAALSRWGFDVMEADDGAAAMAICTSSP-PDLVISDWVMPGMNG 77

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
             F    R MP     +   L  +   E +  G  AGA+ FL KP N   LR  +     
Sbjct: 78  LDFCRMFRDMPRENYGYFILLTSKSGKEDIACGLDAGADDFLTKPVNSSELRARIAAGDR 137

Query: 117 LPQMQKSKDENQFLDA 132
           + +M++   E   L A
Sbjct: 138 ILRMERELTEKNRLIA 153


>gi|30720162|gb|AAN87039.1| OmpR [Thiocapsa roseopersicina]
          Length = 238

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        GF+V  A     A +    E   + +++D  + G     
Sbjct: 8   ILVVDDDSALRALLGDYLAGEGFLVAGAEDGV-AMDAWLAEHETDLVILDLMLPGEDGLT 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              R++    D  +  L    D    I G   GA+ ++ KPFN   L   +R + + +
Sbjct: 67  LA-RRLRARADTPIIMLSARGDDIDRIVGLEVGADDYMPKPFNPRELLARIRAVLRRR 123


>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 226

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +LLLVD    +  +        G+   +  S  EA ++  +    + +++D  M  + 
Sbjct: 1   MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHA-DLVLLDVMMPELD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +    +   ++ G + GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
 gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQ 123


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E  PN +++D  +  +    
Sbjct: 6   VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKF-RETSPNLVILDLMLPVMDGLE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++V +  L  +      + G  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 65  VA-RRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120


>gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 228

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +R        + G+ V +A    EA E  E+  + + +++D  M  +   
Sbjct: 5   TVLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEV-HCMILDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  TATFKIRAE-RNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRR 120


>gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++ +      GF V          +  +KE   + L+ID  + G+  
Sbjct: 16  KKILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESY-DLLIIDIMLPGLDG 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+M    D+ V  +  + +    I G   GA+ ++ KPF+   L   ++   +  
Sbjct: 75  L-EILRRMNEEKDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENY 133

Query: 122 KSKD 125
           +   
Sbjct: 134 ERLK 137


>gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
 gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA +  E           + +++D  M  + 
Sbjct: 1   MPHILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLTDG--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLRENW-QTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QK 122
            +
Sbjct: 118 TQ 119


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTQQTI 127


>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   ++R++ +    D G+ V EA    +A     +E   + +++D  +  +  
Sbjct: 3   KTILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLF-QEHEVHLIILDVMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++   ++V +  L    D +  + G   GA+ +++KP +   L    + L +
Sbjct: 62  WSVCRRIRKV---SNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLE 118

Query: 120 MQKSKDENQFLD 131
            ++  +    L 
Sbjct: 119 NRQMHEPGDMLS 130


>gi|158334668|ref|YP_001515840.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304909|gb|ABW26526.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 546

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M +    +L+VD +     V   +  +  + V  A +   A    +   +P+ +++D  +
Sbjct: 1   MKNSTANILIVDDNVDNLNVLAGMLAEQNYKVRRAINGSIALRAIKAS-IPDLILLDIVL 59

Query: 57  EGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +   +    ++Q P   D+ V ++    D E  +     G   ++ KPF    +   +
Sbjct: 60  PDMTGYDICTQLKQHPSTQDIPVIFISSLNDTEDKVKAFAVGGVDYVSKPFEMAEVCARI 119

Query: 115 RELPQMQKSKDENQFLDA 132
           R   ++Q +K E + L+A
Sbjct: 120 RNQLEIQFAKAEIESLNA 137


>gi|53804207|ref|YP_113897.1| response regulator [Methylococcus capsulatus str. Bath]
 gi|53757968|gb|AAU92259.1| response regulator [Methylococcus capsulatus str. Bath]
          Length = 391

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD   I            G+ V  A    EA E    +    +++ D +M  +   
Sbjct: 2   RILLVDDDPIAVLAVAVYLRKLGYEVTSARDGREALERFRSQ-RFEFVISDWNMPHLNGE 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
                VR + L   V+   L    D + ++ G  AGA+ FL+KP +RE LR  +R    +
Sbjct: 61  ELCRQVRSLKLPHYVYFILLTGRDDKDSLLRGMEAGADDFLVKPVDREELRARIRAGERI 120

Query: 118 PQMQKSKDENQFL 130
            ++++  D+   L
Sbjct: 121 LRLEQQLDQRGRL 133


>gi|323139254|ref|ZP_08074308.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242]
 gi|322395475|gb|EFX98022.1| adenylate/guanylate cyclase [Methylocystis sp. ATCC 49242]
          Length = 539

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +   R + +      G  V  A +   A     K+   + +++D  M  +  F
Sbjct: 195 RILVVDDNASNRDLLKRRLERQGHAVVLAENGSSALAIV-KQAQFDLVLLDLLMPDISGF 253

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ ++      D+ V  +    + + ++    AGA  +L KPF    LR  +    + 
Sbjct: 254 DVLSILKSDLSLRDIPVIMISALNEIDTIVRCIEAGAEDYLAKPFEPVLLRARIGSSLEK 313

Query: 121 QKSKD-ENQFLDAI 133
           ++ +D E +  +A+
Sbjct: 314 KRLRDREREASEAL 327


>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
 gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
          Length = 250

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 4   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 62

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 63  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   + +  GF     T    A E  E+E  P+ +++D  + G+  
Sbjct: 3   QKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAERE-QPDLILLDLMLPGMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      V +  L  + D   ++ G  +GA+ ++ KPF  + L   +R   +
Sbjct: 62  IDICRAIRQDSA---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|51594428|ref|YP_068619.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809460|ref|YP_653376.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Antiqua]
 gi|108813937|ref|YP_649704.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Nepal516]
 gi|145601072|ref|YP_001165148.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Pestoides F]
 gi|150260864|ref|ZP_01917592.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis CA88-4125]
 gi|153948260|ref|YP_001399085.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162420224|ref|YP_001604719.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Angola]
 gi|165926059|ref|ZP_02221891.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936215|ref|ZP_02224784.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011510|ref|ZP_02232408.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213694|ref|ZP_02239729.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398994|ref|ZP_02304518.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418962|ref|ZP_02310715.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426656|ref|ZP_02318409.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468392|ref|ZP_02333096.1| transcriptional regulatory protein CpxR [Yersinia pestis FV-1]
 gi|170026339|ref|YP_001722844.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893415|ref|YP_001870527.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927293|ref|YP_002345168.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis CO92]
 gi|229836187|ref|ZP_04456355.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Pestoides A]
 gi|229839923|ref|ZP_04460082.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842005|ref|ZP_04462160.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904466|ref|ZP_04519577.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Nepal516]
 gi|270488465|ref|ZP_06205539.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502177|ref|YP_003566239.1| two component system response regulatory protein [Yersinia pestis
           Z176003]
 gi|27544276|dbj|BAC54911.1| transcription factor [Yersinia pseudotuberculosis]
 gi|51587710|emb|CAH19310.1| two component system response regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777585|gb|ABG20104.1| two component system response regulatory protein [Yersinia pestis
           Nepal516]
 gi|108781373|gb|ABG15431.1| two component system response regulatory protein [Yersinia pestis
           Antiqua]
 gi|115345904|emb|CAL18763.1| two component system response regulatory protein [Yersinia pestis
           CO92]
 gi|145212768|gb|ABP42175.1| two component system response regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149290272|gb|EDM40349.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis CA88-4125]
 gi|152959755|gb|ABS47216.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353039|gb|ABX86987.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165915829|gb|EDR34437.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921919|gb|EDR39096.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989656|gb|EDR41957.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205096|gb|EDR49576.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962956|gb|EDR58977.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051498|gb|EDR62906.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054345|gb|EDR64162.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752873|gb|ACA70391.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696441|gb|ACC87070.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678584|gb|EEO74689.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Nepal516]
 gi|229690315|gb|EEO82369.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696289|gb|EEO86336.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706635|gb|EEO92641.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Pestoides A]
 gi|262360256|gb|ACY56977.1| two component system response regulatory protein [Yersinia pestis
           D106004]
 gi|262364203|gb|ACY60760.1| two component system response regulatory protein [Yersinia pestis
           D182038]
 gi|270336969|gb|EFA47746.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294352636|gb|ADE62977.1| two component system response regulatory protein [Yersinia pestis
           Z176003]
 gi|320013426|gb|ADV96997.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 232

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDIMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SNWSEQQQ 125


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+    A           +E+ PN +++D  +  +    
Sbjct: 6   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRF-REVNPNLVILDLMLPVMDGIE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R     ++V +  L  +   E  + G  AGA+ +L+KPF+ E L   +R   + 
Sbjct: 65  VAKRIR-KTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120


>gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVETANSAEEALKM--DIGNYDLLLLDIMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  Q  + I
Sbjct: 123 TQQAEAEQIPEQI 135


>gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218]
          Length = 240

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
          Length = 705

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S   A    +++  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    D    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQIKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 240

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +VD    + ++   +  + GF          A E     + P+ +++D  + G+ 
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  L  + D   ++AG  AGA+ ++ KPF    L   +R   
Sbjct: 60  GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARF 116

Query: 119 QMQKSKDEN 127
           ++ K   E+
Sbjct: 117 RIAKPAAED 125


>gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    ++ +        GF V  A+ V  ARE   ++   + L++D  +     
Sbjct: 4   TRILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRH-DLLLLDWMLPDGDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              IA +R  P    + +  L    +      G   GA+ +L KPF+   L   +    +
Sbjct: 63  VSWIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHARLR 122

Query: 120 MQ 121
            +
Sbjct: 123 HR 124


>gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 217

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR--EFCEKELLPNYLVIDESMEG 58
           M  + +V+    +  + + + +  GF V   ++  EA   E  E     + +++D  + G
Sbjct: 1   MFRIAVVEDDISIGNLLKRILSKEGFYVKVYSTG-EALINELFEYGKEYDLIILDVMLPG 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R+  +   V +  L    + +  + G  +GA+ ++ KPF  + L   +R 
Sbjct: 60  MNGVETCRFLRERKV--KVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRA 117

Query: 117 LPQMQK 122
           L + ++
Sbjct: 118 LLRRKE 123


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +  + +      G  V  A +  E  E  ++  +P+ +V+D  M    
Sbjct: 1   MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE--MPDLIVLDIMMPDID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R         + +L  +      I G   G + +++KPF+ + L   +    
Sbjct: 59  GYEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHL 115

Query: 119 QMQK 122
           + +K
Sbjct: 116 RREK 119


>gi|300727408|ref|ZP_07060817.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
 gi|299775288|gb|EFI71887.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
          Length = 1268

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+ ++ +R     +     + V  A +     +    E LP++++ D  M  +   
Sbjct: 1013 KLLIVEDNNDLRSFLTEIL-RVNYEVISAENGKIGLQRAVDE-LPDFIITDVMMPVMDGL 1070

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++Q      + V  L  +   E  + G + G + ++ KPF+   L+  +  +   
Sbjct: 1071 SMVHQIKQNKDICHIPVIVLSAKASLEDRLQGLQEGIDDYITKPFSATYLKRRIENIISQ 1130

Query: 121  QKSKDENQFLDAI 133
            + +  ++ +L+ I
Sbjct: 1131 RHALQQS-YLEQI 1142


>gi|255024504|ref|ZP_05296490.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J1-208]
          Length = 169

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  + 
Sbjct: 1   MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 60  GIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119

Query: 121 QKSKDE 126
            + K E
Sbjct: 120 TEGKAE 125


>gi|220916290|ref|YP_002491594.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954144|gb|ACL64528.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 481

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R+  R +    G+ V EA S  +  E  + E + +  V D  + G+   
Sbjct: 7   SILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPV-DLGVFDIRLPGMDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L  D+ V  +    D   ++   + GA  F  KP +R+ +  ++R     + 
Sbjct: 66  TLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 125

Query: 123 SKDENQFLDA 132
            + + Q L A
Sbjct: 126 LEGKVQALSA 135


>gi|186470431|ref|YP_001861749.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196740|gb|ACC74703.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 2010

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
               L+VD           +  D G     A +  +A    E +   + +++D  M  +  
Sbjct: 1890 RKALIVDDDMRNIFALATVLEDHGMRHVWADNGRDAIRLVETDSEIDIVLMDIMMPEMDG 1949

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                + +R++P+G  + +  +  +           AGA  +L KP NRE L   +     
Sbjct: 1950 LVTTSEIRKLPVGRTLPIIAVTAKAMKGDRERCIEAGAWDYLSKPVNREDLLAVLHAWLH 2009

Query: 120  M 120
             
Sbjct: 2010 R 2010



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 3    SLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L +V++             + GF          A    E +  P+ + +D  +  +  
Sbjct: 1625 RVLMIVENDLAFAHFLLDAAREQGFKGLVTPLGAPALTLAE-QFKPDVITLDLFLPDMDG 1683

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  ++       + V  +      E      +AGA +FL KP     +      +  
Sbjct: 1684 WRVLGRLKNDMATRHIPVCVIST---DESRERALKAGAFAFLTKPIQAREILDDALSVLA 1740

Query: 120  MQKSKDENQFLDAI 133
            +  S      L A+
Sbjct: 1741 VHASAAPRTLLVAL 1754


>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 232

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D   ++           G+   +A +  EA E  EK+ + + +++D  M  +   
Sbjct: 4   TVLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEV-HLILMDIMMPQLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      ++ +  L  + +    IAG   GA+ ++ KPFN   L   +R   +   
Sbjct: 63  SATLKIRQE-KNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYT 121

Query: 123 SKDENQF 129
                Q 
Sbjct: 122 KLGAMQQ 128


>gi|123440486|ref|YP_001004480.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332159711|ref|YP_004296288.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122087447|emb|CAL10228.1| two component system response regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318603811|emb|CBY25309.1| copper-sensing two-component system response regulator CpxR
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325663941|gb|ADZ40585.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330858935|emb|CBX69297.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
           W22703]
          Length = 232

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  ETLKELRQH---HQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 118 SNWSEQQQNVD 128


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 11  RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DVILLDVMMPEMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 129 SLTTKQTI 136


>gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
 gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
          Length = 705

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S   A    +++  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    D    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|15604107|ref|NP_220622.1| response regulator PleD [Rickettsia prowazekii str. Madrid E]
 gi|3860799|emb|CAA14699.1| unknown [Rickettsia prowazekii]
 gi|292571833|gb|ADE29748.1| Regulatory components of sensory transduction system [Rickettsia
           prowazekii Rp22]
          Length = 450

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEK-IDTILLDVMMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GFEVCKMIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 57.5 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 45/129 (34%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V    +  E  +    E   + ++I  ++E    
Sbjct: 152 KKILLINDDVVQAKNIKQMLVKVTKHVKVINNSNE-LDII-NEYRSDLVIISSTLENEDP 209

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +   + E     ++ G   G N + + P     L   +R   +
Sbjct: 210 LRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLR 269

Query: 120 MQKSKDENQ 128
            ++ +D  +
Sbjct: 270 RKQYQDNLR 278


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60
             +L+ D    +R++         F V       +A    E K  + +  +ID  M  + 
Sbjct: 6   TKILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMD 65

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +D  V ++  + +  + + G   GA+ +++KPF+   +   ++ + 
Sbjct: 66  GFALCREIRS---FSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVL 122

Query: 119 QMQKSKDENQFL 130
           +        + +
Sbjct: 123 KRANPVQGEELI 134


>gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 800

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  H  R   +      G  V  A       +  EK    + +++D  M  +  
Sbjct: 680 KKVLIVDDDHRNRFALQSALGKQGITVISAEDGVACLDILEKNTTIDLVLMDIMMPHIDG 739

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           F    H+RQ      + +  L  +          +AGAN ++ KP N + L   MR   
Sbjct: 740 FETMKHIRQSRKHIHLPIIALTAKAMNHDKQKCLQAGANDYVSKPVNLQQLFSVMRVWL 798


>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
 gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|218438405|ref|YP_002376734.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171133|gb|ACK69866.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 361

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L VD +     + +      G+ V        A    +    P+ +++D  M G    E
Sbjct: 12  ILAVDDNPDNLFLIKLALEQEGYRVHLVEDGLTALAQIQYAP-PDLILLDVMMPGINGYE 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ P    + +  +    +   ++ G   GA+ F+ KP   + L+  +R L +++
Sbjct: 71  VTRRIRQNPNIPFIPILLITAY-EEPSLVQGLDVGADEFIRKPVQIDELQARVRSLLRLK 129

Query: 122 KSKDENQ 128
            S D+ +
Sbjct: 130 HSIDQRE 136


>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 223

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    ++++   +  + G++V  A+      E  EK    + +++D  +  +  
Sbjct: 3   KKILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEK-YKFDLIILDIMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +DV +  L    + +  I G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKK---SDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKS 123
              +
Sbjct: 119 RYSN 122


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    +           GF +  A    +A +        + L++D ++    
Sbjct: 1   MSRILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKAL-GSQFDLLILDLNLPHQD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +    G  V +  L    D E  +AG   GA+ ++ KPF    L   +R   + 
Sbjct: 60  GFQILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRH 119

Query: 121 QKSK--DENQFLDA 132
           Q      E + L A
Sbjct: 120 QTLSPVKEERVLTA 133


>gi|33594128|ref|NP_881772.1| two component response regulator [Bordetella pertussis Tohama I]
 gi|33598090|ref|NP_885733.1| transcriptional regulatory protein OmpR [Bordetella parapertussis
           12822]
 gi|33602983|ref|NP_890543.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica
           RB50]
 gi|33564202|emb|CAE43488.1| two component response regulator [Bordetella pertussis Tohama I]
 gi|33566648|emb|CAE38858.1| transcriptional regulatory protein OmpR [Bordetella parapertussis]
 gi|33568614|emb|CAE34372.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica
           RB50]
 gi|332383543|gb|AEE68390.1| two component response regulator [Bordetella pertussis CS]
          Length = 233

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++     N  G+    A    +          P+ LV+D  + G   
Sbjct: 6   TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASD-LAARITRYAPDLLVLDRMLPGGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    G D+ V  L    +    I G  AGA+ +L KPF+   L   +  + + +
Sbjct: 65  ADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124

Query: 122 K 122
           +
Sbjct: 125 R 125


>gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32]
 gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQ 123


>gi|330836392|ref|YP_004411033.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748295|gb|AEC01651.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 251

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    ++++  +     G+ V +A    +A E  +    PN +++D  +     
Sbjct: 16  KVVLIVEDETDIQELISYHLKQEGYSVLQALDGRQALEQIKVGT-PNLVLLDLMLPELSG 74

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  +R     T + V       +   +I G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 75  LEVLKTIRYSWGMTALPVLIASARTEESDIIMGLEIGADDYITKPFSPKVLIARVKAILR 134

Query: 120 MQKSKD 125
             + ++
Sbjct: 135 RTQEQE 140


>gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
 gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
          Length = 459

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      ++     N   + V  A+S  EA    E + +P+ +++D  M G+   
Sbjct: 4   RILVVDDIAANLRLLEARLNAEYYEVALASSGPEALSRAE-DWMPDIILLDVMMPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +   VD  + + G  AGA+ FL KP +  TL   +R L ++
Sbjct: 63  EVCRRLKASTATAHIPVVMVTALVDASERVRGLEAGADDFLSKPVDHSTLFARLRALLRV 122

Query: 121 QKSKDENQFLDA 132
           ++  D  +    
Sbjct: 123 KQVLDAFRLRAE 134



 Score = 48.3 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 1/111 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-VLE 61
           S+LL        ++   +    G  +    +  +A +   +      L+      G  L 
Sbjct: 155 SILLATEDVNEAELLTGVLAVDGVTLRLTGTATQAWQALSEGAFDLALLSLSLDGGEGLR 214

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
             + +R      D+ V  +        ++ G   GAN  +L+P +   LR 
Sbjct: 215 LASRLRAQAATRDLPVLLIADADQHGLVLRGFELGANDHVLRPVDPNELRA 265


>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
 gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V  A       +   +E   +  ++D  + GV 
Sbjct: 1   MSKILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDY-DLFILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR +    +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFDICRQVRNV---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    + ++      + G+ VF+AT+  +A     KE   + +++D  M G+ 
Sbjct: 1   MFNVLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEK-IHLVILDIMMPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  +  +      I G   GA+ +++KPF+   L   ++   + 
Sbjct: 60  GLQVCMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118

Query: 121 QKSKDEN 127
               +EN
Sbjct: 119 YVYLNEN 125


>gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
          Length = 238

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R+         G+ VF+A    E  +  E E   +  ++D  M  +   
Sbjct: 7   RILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLE-EREIDLAIVDVMMPRMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      D  V +L  + +    I G   GA+ ++ KPF    L   +    +   
Sbjct: 66  TMTAKLREKY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYH 124


>gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
 gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase
           [Jannaschia sp. CCS1]
          Length = 464

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R V +       + V +A +   A +   +E  P+ +++D  M  +   
Sbjct: 4   RILVVDDVATNRIVMKVKLTAACYSVDQAENGAAALKAA-RETKPDLILLDVMMPDMSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V  +    D    + G  AGA+ FL KP    TL   +R L ++
Sbjct: 63  DVCRALKADPETADIPVVLITALFDQAAKMDGLEAGADDFLTKPVEEVTLLARVRSLLRV 122

Query: 121 QKSKDENQFLD 131
             S  E +  D
Sbjct: 123 SDSVRELRARD 133



 Score = 56.7 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 35  CEAREFCE-KELLPNYLVIDESMEGVLEFIAHV---RQMPLGTDVFVYYLLMEVDFEKMI 90
             A          P+  VI   +    E +  +   R  P      +  +L E D E+  
Sbjct: 188 ETALTQATGTGNDPDVFVISVDLAQRNEGLRLLSDLRSRPGTRHSAIVMILPEGDSERAA 247

Query: 91  AGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQ 128
                GAN  L  PF+ + L   +      ++  D  +
Sbjct: 248 IALDLGANDVLHDPFDAQELAIRISAQLDRKRQSDRMR 285


>gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
 gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +     +  G  V  A    E       E  P+ +++D  M G     
Sbjct: 17  VLVVDDDAEIRTLLAEYLSQNGIRVTVARDATE-MRQVFDEARPDIIILDLMMPGEDGLT 75

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R++   ++V V  L    D    I G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 76  VC-RELRSRSNVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRRTR 133


>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD  + +  + + + +  GF  V  A S  EA    +KE   + LV+D  M+G+  
Sbjct: 5   SILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEK-IDLLVLDVMMDGMSG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F   A +R+    +D  +++L  +      ++G  +GA+ ++ KPFN   L   +R   +
Sbjct: 64  FEACAAIRE---YSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLK 120

Query: 120 MQKSKDENQ 128
               +++ +
Sbjct: 121 RTYKQEDGR 129


>gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira platensis str. Paraca]
 gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 378

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD      +    +  + G+ V    +  +A      E  P+ +++D  M      +
Sbjct: 13  ILIVDDKPENLQFLFTMLTENGYDVRRVINGKQAINVALFEP-PDLILLDIMMPNLNGYD 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
               +++     D+ + +L    D  + + G   G   ++ KPF    +   +       
Sbjct: 72  VCKILKEKSETKDIPIIFLSALKDVSEKVKGFNVGGVDYISKPFELLEILARVENQLTIV 131

Query: 119 -QMQKSKDENQFLDAI 133
            Q ++  ++N  L+ +
Sbjct: 132 RQKRQLAEQNARLEQL 147


>gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
          Length = 236

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +         + V  A     A +  +    P+ +++D ++     
Sbjct: 4   QKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDA-FNPDLVILDVNLPDTTG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  ++M   T VFV  L         I G   GA+ ++ KPF    L   +R + + Q
Sbjct: 63  F-ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQ 121

Query: 122 KSKDENQF 129
           +S +E + 
Sbjct: 122 RSVEETEM 129


>gi|282896939|ref|ZP_06304945.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
 gi|281198348|gb|EFA73238.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
           brookii D9]
          Length = 210

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + R      G+ V  A +   A    E + +P+ ++ D  M  +  
Sbjct: 5   KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGQRALGILE-QDIPDMIICDVMMPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ    + V V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 64  YTFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 123

Query: 120 MQKSKDENQ 128
                 E+Q
Sbjct: 124 QTSRWKEHQ 132


>gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
 gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R     + + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+V+    +R++        GF V    +  +A     ++  P  +V+D  +      
Sbjct: 6   RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQP-PGLIVLDVMLPDFDGF 64

Query: 61  EFIAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           E +  +R            V +L      E  I+G RAG + ++ KPFN E L   +R +
Sbjct: 65  EVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124

Query: 118 PQMQKSKDENQFL 130
            +    +  +  L
Sbjct: 125 LRRTSGRQTDGRL 137


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1989

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           L       V  A +      + +     + +++D  M G+  
Sbjct: 1870 KKVLVVDDDVRNIFALTSLLERHRMQVIPAENGAAGIAYLQNTPDIDLVLMDVMMPGMDG 1929

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R++P    + +  L  +           AGA+ ++ KP + E L   +R   
Sbjct: 1930 YETMKTIRKIPQFHSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1988



 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             ++++++      ++   +  + GF    A          +K   P  +++D  + G   
Sbjct: 1598 RTIVILEDDINFARLLLEVVREQGFKGLIAMRCSSGLAMIQKHH-PCAVILDICLPGDSG 1656

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
               +  ++  P    +    + ++ +      G + GA  +  KP  +E L   +
Sbjct: 1657 WTVLDRIKHDPYSRHIPAIIMSVKDE---RYRGQKLGAYRYYQKPMIKEKLTQII 1708



 Score = 35.2 bits (81), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVL 60
             +L LV +   +    R +       +  A ++    E     +   + +V+D  +  + 
Sbjct: 1720 KNLFLVSNDEGLLTDLRDIIGSSDVRIDTANTIAAGIERISNTQDKIDCVVLDAKLPAMD 1779

Query: 61   E---FIAHVRQMPLGTDVFVYY 79
                F   ++ +    ++ +  
Sbjct: 1780 NLAVFEEQLQSL-KNRELPIVI 1800


>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA    E E   + +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEK-FDLILMDIMMPKIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   T++ + +L  + + +  I G  +G + ++ KPF+   L   M  + +   
Sbjct: 63  -EAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVS 121

Query: 123 S--KDENQFL 130
           +   +EN+ L
Sbjct: 122 TGVVEENEDL 131


>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 238

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  +      D G  V       +     E+    + LV+D  + GV  
Sbjct: 5   RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGW-DALVLDLMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +         I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
            +  ++  L++
Sbjct: 124 DALAQSARLES 134


>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
 gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
           watsonii WH 8501]
          Length = 233

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           ++LLVD    VR+  +      G   V  A++   A E  +  ++P+ ++ D  M     
Sbjct: 7   TILLVDDEPSVRESVQAYLEYSGNLTVKVASNATNAWEILQT-IIPDVIISDIMMPEVDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R  P    + V +L         I G  AG +++L KPF+ E L   +  L +
Sbjct: 66  YQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKPFDPEELEAIVNNLLE 125

Query: 120 MQK 122
            +K
Sbjct: 126 RRK 128


>gi|186685534|ref|YP_001868730.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186467986|gb|ACC83787.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 439

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++D      +V     +  G+ V          E   K   P+ +++D  M G+  
Sbjct: 8   QTILIIDDHPTNIEVLYDALDQAGYKVLVEMDGWHGIETV-KSYPPDLILLDVMMPGIDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      ++ + ++    D    + G   GA  ++ KPF +E +   +    +
Sbjct: 67  FETCRQLKSQQTTCEIPIIFMTALNDTTDKVKGLGLGAVDYITKPFQQEEVLARIGIHLK 126

Query: 120 MQKSKDEN 127
           ++++  E 
Sbjct: 127 LRRANLEL 134


>gi|332829883|gb|EGK02523.1| hypothetical protein HMPREF9455_01391 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1409

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +RK    + +D+ + V EA +  EA +  +     ++++ D  M  +   
Sbjct: 1159 TILVVEDNMDMRKYICSILSDY-YKVAEAENGEEALKVLKA-TAIDFIISDLMMPVMDGL 1216

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   + GA+ FL KPF+ E L   +  + ++
Sbjct: 1217 ELSQKVKSDMSTSHIPFLMLTAKTSIETQIGSYKMGADEFLTKPFDEELLLTRINNILEI 1276

Query: 121  QKSKDE 126
            +K    
Sbjct: 1277 RKLYQR 1282


>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + +         G+ V  +++  EA    E     + +V+D  +  + 
Sbjct: 1   MTRVLLVEDDPAISEPLARALGREGYEVLASSTGREALTNVEGA---DLVVLDLGLPDMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  V +  L    D   M+ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 58  GLDVAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117

Query: 121 QKSKDENQFLDA 132
             ++     L A
Sbjct: 118 HTAEPAESELRA 129


>gi|255691713|ref|ZP_05415388.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622598|gb|EEX45469.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1337

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 4/128 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            M  +L+V+ +  +R     L +   + V    +  EA     KE  P  ++ D  M  + 
Sbjct: 1065 MQRILIVEDNDELRSYLVSLLSPQ-YYVQACCNGREAL-VIVKEFWPELILSDVMMPEMQ 1122

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              E  A +++    + + V  L    D + ++ G   GA+ +++KPF+ + L+  +  L 
Sbjct: 1123 GDELCAAIKKDVETSHIPVLLLTALGDEKNILDGLTIGADEYIVKPFSVKLLKANIANLL 1182

Query: 119  QMQKSKDE 126
              +    +
Sbjct: 1183 SNRALLRQ 1190


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
            AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
            AFC27]
          Length = 1240

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD    +R   R++    G+ + EA +  +A EFC+++ +P+ +++D  M  +  F
Sbjct: 925  RVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEFCKQQ-MPDLVLMDAVMPVLDGF 983

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               A +R +P      V  +    D   + +   AGA  ++ KP +   LR  +  L   
Sbjct: 984  NACAQIRDLPDSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRKRVARLLDA 1043

Query: 121  QKSKDENQFLD 131
             +++ +   L 
Sbjct: 1044 SRAEKDIHQLA 1054



 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ + + ++V   +   FG  V   ++  EA +      +   +++D  M  +  
Sbjct: 662 RRILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAI-ANKVYELVLMDCHMPQMDG 720

Query: 62  --FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R    G   V +  +   V          AG N +L KP     LR  +R   
Sbjct: 721 YEATRRIRVREAGNKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 780



 Score = 52.9 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
            LL+VD+S   R+     FN +G     +    +A         +    + +++DE+M  
Sbjct: 519 RLLIVDNSAASRRFIGQTFNAWGMYHGCSEDGQKALRMLRSAAVEGRAYDLVLVDENMLD 578

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                    + +  L   V +  +  +      I+    G  +++ KP  + +L   +  
Sbjct: 579 LKGFNLAHKITEDSLIAPVKIILMGHQHHPASSISSLP-GVVNYVAKPVQQSSLYNVIVS 637

Query: 117 LPQMQKS 123
             +  ++
Sbjct: 638 AVKQNEA 644


>gi|229586486|ref|YP_002844987.1| response regulator PleD [Rickettsia africae ESF-5]
 gi|228021536|gb|ACP53244.1| Regulatory components of sensory transduction system [Rickettsia
           africae ESF-5]
          Length = 450

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQAKNIKKMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R       V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRGKAEINGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + VF+  +  EA    E+E L +  ++D  M  +  F
Sbjct: 2   NILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGL-DLAILDIMMPHIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +      +  V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 61  TVLQKIRETY-NFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRR 117


>gi|332665274|ref|YP_004448062.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332334088|gb|AEE51189.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +LLV+       V R       + V  A    E  E  +K    +  + D  M     
Sbjct: 4   NRILLVEDDQNFGDVLRSYLEMHDYDVTLAKDGVEGLESYKKGHY-DLCIFDVMMPKKDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           ++ + +L  +   + ++ G R GA+ ++ KPFN E L F +  + +  
Sbjct: 63  FTLAREIREKDREMPIVFLTAKTMKDDVLEGFRIGADDYISKPFNSEELLFRIHAILKRS 122

Query: 122 KSKDENQ 128
           ++K E +
Sbjct: 123 QTKAELK 129


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    + +         G+ V+      E  +  E E+ P+ +++D  + G   +
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVE-EIHPDLILLDIMLPGINGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    ++V +  +  + D    + G  +GA+ ++ KPF  E L   +R   + 
Sbjct: 64  EICRKIRQH---SNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRK 120

Query: 121 QKSKDENQFL 130
            K  +  + +
Sbjct: 121 SKQLNIIREI 130


>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R +        G  +  A +  EA E   +  + + +V+D  M  +  
Sbjct: 3   KTILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHV-DLVVLDIMMPVMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           + A  +++   ++V +  L    + E+ + G + G +S++ KP + + L   ++ L +  
Sbjct: 62  WTAC-KELRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRT 120

Query: 122 KSKDENQ 128
            S++ENQ
Sbjct: 121 YSEEENQ 127


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    + +V R    + GF V  A +   A +  + E  P+  + D  M  +  F
Sbjct: 4   KILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSES-PDLAIFDIMMPEMNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   + + + + +L         I G   GA+ ++ KPFN   +   ++   + + 
Sbjct: 63  ELTKRVR-ITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKY 121

Query: 123 SKD 125
             D
Sbjct: 122 KLD 124


>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R +     +  G+ V  A    EA    ++   P+ +V+D  +     F
Sbjct: 9   TVLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDR-CRPDLIVLDVMLPDTDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G    V +L    + E  I G  +G + ++ KPF+ + +   +R + + 
Sbjct: 68  AVTRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRR 125


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTNVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 249

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + ++        G+ V   +     RE       P+ +++D  + G+ 
Sbjct: 17  MPNILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNP-PDLVILDLMLPGLD 75

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G  + +  L    D    + G   GA+ ++ KP     L   +R L 
Sbjct: 76  GLQVCRLLRADSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 133

Query: 119 QMQKSKDEN 127
           +     +  
Sbjct: 134 RRSSLSEPQ 142


>gi|260642820|ref|ZP_05417466.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260620414|gb|EEX43285.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1343

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +    ++   ++  EA      E  P+ ++ D  M  +  
Sbjct: 1076 QRILIVEDNDELRNYLSQTLS-EDHLIQVCSNGKEALTVIP-EYKPDLVISDIMMPEMRG 1133

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G R GA+ ++LKPFN   L+  +  L  
Sbjct: 1134 DELCQAIKSNIETSHIPVILLTALNNEKDILSGLRIGADEYVLKPFNIGILKATISNLLA 1193

Query: 120  MQKSKD 125
             +    
Sbjct: 1194 NRALLR 1199


>gi|189464563|ref|ZP_03013348.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM
            17393]
 gi|189438353|gb|EDV07338.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM
            17393]
          Length = 1370

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+ D +  +R+  R       + + E  +  EA E   K+  P+ L+ D  M  +   
Sbjct: 1103 RILIADDNEEIRRYIRQELTP-DYHITECNNGQEAFEQIIKD-APDALISDVMMPEMDGM 1160

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +RQ  L + + V  L  +++ E  +     G ++++ KPFN + L+  +R +   
Sbjct: 1161 TLCRKIRQNILVSHIPVILLTAKINEESNLEALEGGVDAYITKPFNIDVLKKTIRNVIYR 1220

Query: 121  QKS 123
             + 
Sbjct: 1221 HEL 1223


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     ++  P+ +V+D  +  +   
Sbjct: 22  RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAV-RAARDFRPDAVVLDVMLPDMDGL 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 81  SVLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140

Query: 123 S 123
           S
Sbjct: 141 S 141


>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLVD    + +V   L    G+ V  A    EA E  ++E  P+ +V+D  M  +
Sbjct: 1   MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREE-PDLVVLDIMMPRL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             F   ++++   +DV V  L  +      + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  SGF-EVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117


>gi|17228672|ref|NP_485220.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130524|dbj|BAB73134.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 440

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +    KV     +  G+ +  AT    A E  E    P+ +++D  M  +  F
Sbjct: 11  TVLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYA-QPDIILLDVMMPEMDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      D+ V +L    D    +     G   ++ KPFN + +   ++   ++
Sbjct: 70  QTCAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQVHLKL 129

Query: 121 ----QKSKDENQFLDAI 133
               ++ + +NQ LD +
Sbjct: 130 SFLTKELEIKNQELDKL 146


>gi|330831457|ref|YP_004394409.1| two-component system response regulator [Aeromonas veronii B565]
 gi|328806593|gb|AEB51792.1| Two-component system response regulator [Aeromonas veronii B565]
          Length = 426

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + K+        G+ V  A S   A +   ++   + ++ D  M G+ 
Sbjct: 1   MSRILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA-DLVLSDLRMAGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R       + V  +         I   R+G  SFL KP N++ L   +     +
Sbjct: 60  GLALFERIQAQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPINKDELFATIEHALSL 119

Query: 121 QKSKDENQ 128
            + K + +
Sbjct: 120 TRPKQQQE 127


>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
           platensis str. Paraca]
          Length = 203

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           +LVD    +  +        G+ V  A +  +A E  E+E +P  ++ D  M  +     
Sbjct: 1   MLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEE-VPELIICDIMMPEMDGYTL 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +  +R+      + V +L  +   E  + G   GA+ +++KPF+ E L   +    +  +
Sbjct: 60  VKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLRQTE 119


>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    D G+ V EAT   EA    E+  + + +++D  +  +
Sbjct: 1   MQRNILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
 gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
          Length = 218

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+ +  +    + +    G++V  A    EA ++       + +++D  +  +  +
Sbjct: 2   KILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEY-DLIILDIMLPKIDGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G +  +  L  +   E  + G   GA+ +L+KPF  + L   +R L +   
Sbjct: 61  QVCQLARDKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRAS 120

Query: 123 SKDEN 127
           ++  N
Sbjct: 121 AEKSN 125


>gi|157375999|ref|YP_001474599.1| two-component response regulator [Shewanella sediminis HAW-EB3]
 gi|157318373|gb|ABV37471.1| two-component response regulator [Shewanella sediminis HAW-EB3]
          Length = 383

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LL+VD +     + R +  D  + V  AT+  +A E    +  P  +++D  M  +   
Sbjct: 17  TLLVVDDTPANISLLREILKDQ-YKVKIATNGVKALEVAVSKPAPELILLDIMMPEMDGY 75

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ + +L  + +      G   GA  ++ KP +   +   ++    +
Sbjct: 76  QVCERLKGDEATRDIPIIFLTAKAEVIDETKGLAMGAVDYITKPISPPIVLERVKTQLTL 135

Query: 121 QKSKD----ENQFLD 131
           ++++D    +N+ L+
Sbjct: 136 KEARDFLKNQNELLE 150


>gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +        G+    A +   A         P+ +++D  +  
Sbjct: 1   MNKLLILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAI-LEASSYNPDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      +R++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDGV-EIIRKIRSWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium
           sticklandii DSM 519]
 gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium
           sticklandii]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + ++        G+    A    E      ++  P+ ++ D  M  +   
Sbjct: 4   KILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALF-RDSNPDLVISDVMMPTIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++ L +DV V  L  + +    + G   GA+ ++ KPF+ + L   +  + +   
Sbjct: 63  -EVLREIRLISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTY 121

Query: 123 SKDENQF 129
              EN+ 
Sbjct: 122 KTIENKQ 128


>gi|300869426|ref|ZP_07114011.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300332556|emb|CBN59209.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 377

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+VD       V   L ++  + ++ A +  +A E+ +    P+ +++D  M G   +
Sbjct: 5   SILIVDDEPDNFDVIETLLSEQDYQLYYAANGHDALEYLDT-FEPDLILLDVMMPGIDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++ +     V +  +        +     AGA+ F+ KP N   LR  +  + ++
Sbjct: 64  EVCRQIKALSKWQAVPIIMVTALNSKSDLAYCLTAGADDFISKPVNGIELRARVHSMLRI 123

Query: 121 QKSKDENQFL 130
           ++  D  Q L
Sbjct: 124 KQQYDNIQTL 133


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + +  +     +G+ VF A+S  EA E   +   P+ +++D  + G   L
Sbjct: 7   RILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRH-RPDLILLDLGLPGISGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           E    VR+    +++ +  L ++      +     GA+ ++ KPF    +   +R   +
Sbjct: 66  EVCRKVREQ---SNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALR 121


>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
 gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268]
 gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268]
          Length = 237

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         G+ V +A    +  +  EKE + + +++D  M G+ 
Sbjct: 1   MQKILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENV-DLIILDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  GIRTTLKIREK-SSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRR 118


>gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
 gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
          Length = 238

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R+         G+ VF+A    E  +  E+E +    ++D  M  +   
Sbjct: 7   RILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEV-QLAIVDVMMPRMDGI 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+   +  D  V +L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 66  TMVVKLREMY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYR 124


>gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
 gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
          Length = 237

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      G++V EA    EA + C ++   + L++D  M  +  
Sbjct: 17  QHILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLC-RDRDFDILILDVMMPELDG 75

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+     +  V  L    +    I G   G + +++KPF+   L   ++ +  
Sbjct: 76  FSTCREIRK---FKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILN 132

Query: 120 MQKSKDENQFLDA 132
             +     + + A
Sbjct: 133 RSQPPQAEKEIAA 145


>gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 240

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + +      G  V  A    E  +   +E   + LV+D  M G   
Sbjct: 6   THILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKE-MKRLLEEREFDLLVLDLMMPGEDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++   + + +  L    +    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 65  LTLC-RELRAKSSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRT 123

Query: 122 KSKDE 126
           + + +
Sbjct: 124 QVEPQ 128


>gi|113866613|ref|YP_725102.1| response regulator [Ralstonia eutropha H16]
 gi|113525389|emb|CAJ91734.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 247

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V       +  +   +   P  +V+D  M  V  
Sbjct: 7   TQILVVDDDPELRDLLREYLTQQGFAVSVMHDG-DGLQARLERERPALIVLDLMMPKVDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 66  LTALRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125

Query: 122 KSK 124
            ++
Sbjct: 126 LAR 128


>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++         F    A    E  +  ++    + +V+D  +       
Sbjct: 7   ILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRH-AIDLVVLDLMLPDTDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +++ V  L    +    I G   GA+ +L+KPF+   L   ++ + +  
Sbjct: 66  LCRELRAK---SNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRT 122

Query: 122 KSKDENQFLDA 132
           ++   N   ++
Sbjct: 123 RALPPNMRPES 133


>gi|89901514|ref|YP_523985.1| Fis family two component sigma-54 specific transcriptional
           regulator [Rhodoferax ferrireducens T118]
 gi|89346251|gb|ABD70454.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Rhodoferax ferrireducens T118]
          Length = 474

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   IV +    + ND  + V  A    EA +  + E   + L++D  M  +   
Sbjct: 4   RILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVD-ETAYDILILDVMMPKMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      ++ V  +    + +  +   + GA  +L KPF+ + L+  +    + ++
Sbjct: 63  EVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERRQ 122

Query: 123 SKDENQFLD 131
              EN+ L 
Sbjct: 123 LMQENRKLK 131


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    + +          + V          +        + +++D  +  + 
Sbjct: 1   MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKAL-NKSYDLIILDLMLPNIN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ        +  +  + +    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLKICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|224537529|ref|ZP_03678068.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520842|gb|EEF89947.1| hypothetical protein BACCELL_02408 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1373

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L++D +  +  + + + +D  + +  A +  E      K+  P+ ++ D  M  +  
Sbjct: 1115 TTILMIDDNKELLWMLKDILSDE-YSILTAENGEEGL-VLLKQKTPDLIITDIMMPKIDG 1172

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               I  ++       + +  L  +   ++ I G  +GA++++ KPFN + LR  +++L +
Sbjct: 1173 ITLIKQLKSNKHTMHIPLIILSAKNTTDEKIEGIESGADAYIPKPFNTQYLRSIIKQLLK 1232

Query: 120  MQKSKDE 126
             Q+   +
Sbjct: 1233 KQEELKQ 1239


>gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
 gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. K]
          Length = 322

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S         +    G+ V  A    +A      E  P+ +++D  +  +   
Sbjct: 6   KILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEP-PDLVLLDMILPDMDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  V+  P    + V  L ++ D +  +AG R GA+ FL KPF    +      + ++
Sbjct: 65  EVLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI 124

Query: 121 QKSKDENQ 128
           +  +D+ +
Sbjct: 125 KTLQDQLR 132


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+   I+ +  R+     G+ V  A       E   ++  P+ +++D  +  + 
Sbjct: 3   MSTILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRD-QPDMVILDVMLPRLD 61

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ      V +  L    D    IAG   GA+ ++ KPF+   L   +R + 
Sbjct: 62  GFSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIM 118

Query: 119 QMQKSK 124
           +  + +
Sbjct: 119 RRSERR 124


>gi|29349519|ref|NP_813022.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341428|gb|AAO79216.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1511

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R   R +F    + V EA+   E      K  LP+ ++ D  M     +E 
Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1293

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1294 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1353

Query: 122  KSKD 125
            K ++
Sbjct: 1354 KLQN 1357


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLVD    +  +        GF V  A       E    +   + +V+D  + G+  F 
Sbjct: 3   ILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKAL-QPGIDLVVLDVMLPGIDGF- 60

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++++   + V V  L    +    I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 61  EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYE 119


>gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 223

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+V R      G  V EA    +A +   KE   + +V+D  M  + 
Sbjct: 1   MFKILVVDDEKSIREVIRTYAEFEGHEVVEAVDGLDAIDKV-KEEDFDVIVMDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F ++ +++    ++ V  L    +    + G   G + ++ KPF+ + L   +  +   
Sbjct: 60  GFSSY-KEIKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNR 118

Query: 121 QKSKDENQFLD 131
               +EN+ ++
Sbjct: 119 NNKVEENKTME 129


>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 225

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R++ +    + G  V EA    +A    + E   + +V+D  M  + 
Sbjct: 1   MTKLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEK-IDMVVMDIMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     TD+ +  L  + +  + I G   G + +L+KPF    L   ++ + 
Sbjct: 60  GWALCEEIR--SFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSIL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
          Length = 1307

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +        +   + V  A +  EA +  E++ + + ++ D  M  +   
Sbjct: 1061 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1118

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + V  L  + + E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1119 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1178

Query: 121  QKSKDE 126
            ++    
Sbjct: 1179 RERLRR 1184


>gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1307

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +        +   + V  A +  EA +  E++ + + ++ D  M  +   
Sbjct: 1061 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1118

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + V  L  + + E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1119 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1178

Query: 121  QKSKDE 126
            ++    
Sbjct: 1179 RERLRR 1184


>gi|242281135|ref|YP_002993264.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242124029|gb|ACS81725.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R   R +  D GF V EA S  +A E    E  P+ + +D  + G+  
Sbjct: 3   KNILIVDDEDGIRYSLRGILEDEGFDVSEAESGEKALEHL-NEDQPDLVFLDIWLPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + V  +    + E  ++  + GA  F+ KP + E +     +  +  
Sbjct: 62  LEVLDRIKKEWDWLPVVMISGHGNIETAVSAIKKGAFDFIEKPLSLEKVVITAEKAVEFS 121

Query: 122 KSKDENQFL 130
           + + EN+ L
Sbjct: 122 RLQSENKAL 130


>gi|254416266|ref|ZP_05030020.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176948|gb|EDX71958.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 506

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +++VD +     V      D GF V  A     A +  E    P+ +++D  M G+  F 
Sbjct: 19  IVIVDDTPHNLGVLFDFLTDSGFKVLVAQDGQSALQKVEYAK-PDLILLDVMMPGIDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ V +L    D    + G   GA  F+ KP  +E ++  +     ++
Sbjct: 78  TCRRLKANPATRDIPVLFLSALSDAVDKVKGFNLGAVDFITKPVQQEEVKARVTTHLALR 137

Query: 122 ----KSKDENQFLDA 132
               + +++N  L A
Sbjct: 138 NLQKRLEEQNLQLQA 152


>gi|78061758|ref|YP_371666.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969643|gb|ABB11022.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 395

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++++D    +R + +      GF V          +   +    + LV+D  ME     
Sbjct: 164 RIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKR-LDRLLQREPYDLLVLDLMMEPEDGL 222

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + +  L  + D    + G   GA+ +L KPF  + L   +R L + QK
Sbjct: 223 SVCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRRQK 282

Query: 123 SKD 125
              
Sbjct: 283 MAA 285


>gi|56552073|ref|YP_162912.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762025|ref|ZP_04760109.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|4511977|gb|AAD21537.1| aerobic respiration control protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543647|gb|AAV89801.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373491|gb|EER63078.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 241

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++++V+    +R +   +  + G++     S  E  E  +   + + +++D  + G   
Sbjct: 4   QTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTV-DLILMDVMLPGKNG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R       + V +L    D    + G   G + ++ KPF ++ L   +R + +
Sbjct: 63  LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122

Query: 120 MQKSKDE 126
             ++  E
Sbjct: 123 RSQAVKE 129


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    + +    L    GF VF A     A +    E   + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAED-IDIILLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V V  +         + G   GA+ ++ KP+    L   +R + 
Sbjct: 60  GTEVCRQLRQ---TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
 gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
          Length = 221

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    + ++         + V       EA +F       + ++ D  M      
Sbjct: 2   RILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEY-DLIITDIMMPNVNGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EFI  +R      +  V  L  +   E  I G  +GA+ +++KPF  + L   +R L + 
Sbjct: 61  EFIEKLRNNKN--NTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118


>gi|323188052|gb|EFZ73347.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           RN587/1]
          Length = 461

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|284990061|ref|YP_003408615.1| response regulator receiver modulated diguanylate cyclase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063306|gb|ADB74244.1| response regulator receiver modulated diguanylate cyclase
           [Geodermatophilus obscurus DSM 43160]
          Length = 767

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            + L+VD   +V ++ R      G  V  A    EA +    E +P+ +V D +M G+  
Sbjct: 9   RTALVVDDDEMVAELVRAGLESAGLTVVTAADGHEALDRL-AEAVPDVVVSDVNMPGMDG 67

Query: 62  FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
           F     +R  P    V + +L      + ++ G R GA+ ++ KPF+ + L   +
Sbjct: 68  FALVSRLRAEPATRRVPLVFLSSRSQRDDVLTGLRLGADDYVRKPFDLDELVGRV 122


>gi|238750821|ref|ZP_04612319.1| Transcriptional regulator in 2-component system [Yersinia rohdei
           ATCC 43380]
 gi|238710965|gb|EEQ03185.1| Transcriptional regulator in 2-component system [Yersinia rohdei
           ATCC 43380]
          Length = 264

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 33  MHKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIMMPRKNGI 92

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 93  ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 149

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 150 SNWSEQQQNVD 160


>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 224

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++        G+ V +A +  +A EF       + L++D  M  + 
Sbjct: 1   MK-ILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEY-DLLIVDILMPEMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                         V V +L      E  + G  AG + +L+KPF    L   +R L + 
Sbjct: 59  GLTLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRR 118


>gi|224535984|ref|ZP_03676523.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522398|gb|EEF91503.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1111

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LLLV+ +  +  +   L     + +  AT+  EA E  E E   + +V D  M  +   
Sbjct: 854 TLLLVEDNEDLLGLMVKLLGT-DYKIHTATNGKEALEIVESED-IDLIVSDVMMPVMDGI 911

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++     + + +  L  +   E  +    +GA++F+ KPFN   L   +  L + 
Sbjct: 912 EFCRSIKGNFDTSHIPLILLTAKKQEEDRVEAYESGADAFITKPFNLSVLHARIGNLLKS 971

Query: 121 QK 122
           ++
Sbjct: 972 RE 973


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|170019466|ref|YP_001724420.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           ATCC 8739]
 gi|169754394|gb|ACA77093.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Escherichia coli ATCC 8739]
          Length = 461

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|146305871|ref|YP_001186336.1| response regulator receiver protein [Pseudomonas mendocina ymp]
 gi|145574072|gb|ABP83604.1| response regulator receiver protein [Pseudomonas mendocina ymp]
          Length = 395

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++   L  D  + V  A++  +A    +    P+ +++D  M  +    
Sbjct: 13  VLVVDDTPDNLQLISELLIDR-YRVKVASNGAKALRIAQASPAPDLILLDIMMPEMDGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ V +L  + +      G   GA  ++ KP +   L   +R   Q++
Sbjct: 72  VCRQLKADPQTRDIPVIFLTAKSEVAAEQMGFDLGAADYITKPISPPILLARVRAQLQLK 131

Query: 122 KSKD 125
            + D
Sbjct: 132 AATD 135


>gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1381

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LLV+ +  +  +   L +   + VF A +  E     EKE + + +V D  M  +  
Sbjct: 1127 NTILLVEDNGELLHLMTKLLSRE-YNVFTAQNGKEGIAVLEKEDV-DLIVSDVMMPEMDG 1184

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              F  +V+     + + +  L  +   E        GA++F+ KPFN   L   +R L +
Sbjct: 1185 IEFCKYVKGHLEMSHIPMILLTAKNKEEDRAEAYEIGADAFISKPFNLTVLHARIRNLLK 1244

Query: 120  MQKSKDEN 127
             ++    +
Sbjct: 1245 YKERMARD 1252


>gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 254

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    V  V        GF    A     A +   +E  P+ +++D  +  +   
Sbjct: 24  TVLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAW-RERRPDVVILDVMLPLMSGL 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R+        V  L    + +  + G   GA+ +++KPF+       +  L +  +
Sbjct: 83  EVLRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRRAE 142


>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
 gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     +E  P+ +V+D  +  +   
Sbjct: 23  RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTV-REFRPDAVVLDIMLPDMDGL 81

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      DV V +L      E  IAG  AG + ++ KPF+ E +   +R L + 
Sbjct: 82  AVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 139


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A +  +A            +++D  M  + 
Sbjct: 16  MK-ILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMD 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++   + + +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 75  GM-EVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 133

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 134 SEGQMTN 140


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  +  +     GF V       EA E    E LP+ +++D  + G   L
Sbjct: 19  RILVVEDEAALALLLAYNLESEGFQVEHVERGDEA-EIRLSESLPDLVILDWMLPGVSGL 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + V  L    D  + + G   GA+ +++KPF+   L   +  L + 
Sbjct: 78  EICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRR 137

Query: 121 QKSKDENQFLDA 132
            + +     L A
Sbjct: 138 ARPERVATRLVA 149


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +       F  F A       +   K    + +++D  +  + 
Sbjct: 1   MAKVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMF-KNNSFDIVLLDVMLPDMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      + V  +    +    + G   GA+ +++KPF+   +   ++ + 
Sbjct: 60  GWNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAIL 116

Query: 119 QMQKSKDENQFLD 131
              K  + +  + 
Sbjct: 117 SRSKWAESDNLIS 129


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+    + +          + V          +        + +++D  +    
Sbjct: 1   MTNILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKAL-NKSYDLIILDLMLPNIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + +    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRQIRQE---QSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQ 121
           + Q
Sbjct: 117 RRQ 119


>gi|198276812|ref|ZP_03209343.1| hypothetical protein BACPLE_03015 [Bacteroides plebeius DSM 17135]
 gi|198270337|gb|EDY94607.1| hypothetical protein BACPLE_03015 [Bacteroides plebeius DSM 17135]
          Length = 1326

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R    H  +D  + V    +  EA +F   E  P+ ++ D  M  +    
Sbjct: 1077 ILVVEDNVSLRSFIMHSLSDT-YRVEGVGNGQEALDFV-HEKQPDLILSDIMMPIMDGKR 1134

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + +  L    D E ++ G    A+ +L+KPF+   L+  +  L + +
Sbjct: 1135 MCQILKEQMETSHIPIILLTALGDKEHILEGLEIKADQYLVKPFDIHILKATIHTLIENR 1194

Query: 122  KSKDENQFLDAI 133
            +    ++F  A+
Sbjct: 1195 RMLR-DRFKSAV 1205


>gi|189464856|ref|ZP_03013641.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM
            17393]
 gi|189437130|gb|EDV06115.1| hypothetical protein BACINT_01200 [Bacteroides intestinalis DSM
            17393]
          Length = 1347

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 2    DSLL-LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              +L +V+ +  +       F+D  F V  A +  +  E      +P+ +V D  M  + 
Sbjct: 1091 KRILLIVEDNQDICNYIAESFSD-DFEVKTAANGQQGMEQALS-CIPDIVVSDVMMPIMN 1148

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + +  L  +   +    G + GA+S+L KPF+   L   +  L 
Sbjct: 1149 GITMCKMLKEDVRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRINNLL 1208

Query: 119  QMQKSKDE 126
            + +K   E
Sbjct: 1209 ESRKRLAE 1216


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTQQTI 127


>gi|116328024|ref|YP_797744.1| sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331523|ref|YP_801241.1| sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120768|gb|ABJ78811.1| Sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125212|gb|ABJ76483.1| Sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 222

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL +    +R   R +    GF +  A +  E     ++   P+ LV+D  +    
Sbjct: 1   MRTILLTEDEPGIRDTIRVVLESEGFKMISAMTGKECLSLLKES--PDLLVLDVGLPDGN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++     + V  L         + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 59  GF-EILKELRKKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRR 117

Query: 121 QKSKDENQFLD 131
                E +  +
Sbjct: 118 YDGSSEKKRTE 128


>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+ D    +R +        G+ V + +   EA +   ++ + + L++D  M      
Sbjct: 5   SILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQ-VIDLLILDIMMPNIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ + +L  +      + G   GA+ ++ KPF    L   +    + 
Sbjct: 64  EVARQIREQ---HNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRR 120

Query: 121 QKSKDE 126
            K  ++
Sbjct: 121 FKKLNQ 126


>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 221

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +    +    + G+ +  A    +  E    E  P+ +++D  +  + 
Sbjct: 1   MQHILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEK-PDLILLDWVLPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ  +  ++ + +L      +  I G + GAN ++ KPF+ E L   ++   
Sbjct: 60  GIDVCKAIRQEDI--NIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHF 117

Query: 119 Q 119
           +
Sbjct: 118 R 118


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +      ++ GF V  A     A     K+  P+ +++D  M G+  F
Sbjct: 11  KILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLM-KQFQPHVVILDVMMPGMDGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++M    +V V  L  + + +  + G   GA+ +++KPF+ E L   +    + 
Sbjct: 70  EVCRMLKKMD---NVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRN 126

Query: 121 Q 121
           Q
Sbjct: 127 Q 127


>gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D +  +R++ R L    G+ V EA +  +A    +K    + +++D  M    
Sbjct: 1   MKNILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAVIKVDKN--IDLIILDIMMPIKS 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    T   + +L  +        G  +G + +L KPF+   L   ++ L 
Sbjct: 59  GFKACVEIREK---TSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
 gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
          Length = 227

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G ++GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|298528354|ref|ZP_07015758.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512006|gb|EFI35908.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1029

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      +V   L     + V  A     A E       P+ +++D  M  +    
Sbjct: 13  VLIVDDQPASIEVLGSLL-REDYHVLVAAGGTRALEMVFGNTRPDLILLDIMMPDMDGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++         V +L      E    G   GA  ++ KPF    +R  +R    ++
Sbjct: 72  VCRRLKADERTRGTPVIFLTAMDQDEDEELGFSLGAADYITKPFKPSIVRARVRTQINLK 131

Query: 122 KSKDENQF 129
              D  + 
Sbjct: 132 LHADLLEQ 139


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +         G+ V  A           +E  P+ +++D  + G+    
Sbjct: 5   ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTA-RESNPDLILLDWMLPGISGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM--Q 121
              R    G  V +  L  + +    + G  AGA+ +++KPF+ E L   +R   +   +
Sbjct: 64  ICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSE 123

Query: 122 KSKDENQFLD 131
            + DE QF+D
Sbjct: 124 NNADEVQFMD 133


>gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72]
 gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 227

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+V+ +  +           G+ V  A                + +V+D  + G+  
Sbjct: 3   TRLLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHH-FDLIVLDVMLPGMDG 61

Query: 62  FIAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F    R      +D  +  L      +  + G  AGA+ +L KPF    L   +  + +
Sbjct: 62  FTLCKRLREGERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVLK 120


>gi|330447153|ref|ZP_08310803.1| osmolarity response regulator [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491344|dbj|GAA05300.1| osmolarity response regulator [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 239

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KVLVVDDDMRLRALLERYLSEQGFQVRSVANGEQ-MDRLLARETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++  +     G+ VF AT+  +A     K   P+ +++D  M  +  
Sbjct: 6   QKILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARK-TSPDLIILDVMMPKMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R MP   + F+ +L   ++    IAG   GA+ ++ KP     L   +  + +
Sbjct: 65  IEACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILR 124

Query: 120 MQKSKDENQ 128
               + E +
Sbjct: 125 R-NLQGEEE 132


>gi|304383610|ref|ZP_07366069.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           marshii DSM 16973]
 gi|304335134|gb|EFM01405.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           marshii DSM 16973]
          Length = 901

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+++ +  V         D  + +  A    E  +   KEL+P+ ++ D  M     L
Sbjct: 647 RILVIEDNADVAAYIGSRLADR-YAILYAPDGNEGLKKA-KELVPDLIITDLMMPHTDGL 704

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR   +   V +  +  ++     +AG +AGA+++L KPFN + LR  + +L + 
Sbjct: 705 EVCRQVRDDEIINHVPIIVVTAKITEADRVAGLQAGADAYLAKPFNSDELRTRVEKLLEQ 764

Query: 121 QKSKDE 126
           ++   E
Sbjct: 765 RRLLRE 770


>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     ++  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RDTKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V V  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|298385015|ref|ZP_06994574.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298262159|gb|EFI05024.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1511

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R   R +F    + V EA+   E      K  LP+ ++ D  M     +E 
Sbjct: 1236 LLVEDNQELRSFLRSIFAST-YRVVEASEGMEGWSKALK-YLPDIIISDVMMPEKDGIEM 1293

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 1294 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLMQRK 1353

Query: 122  KSKD 125
            K ++
Sbjct: 1354 KLQN 1357


>gi|226315460|ref|YP_002775356.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098410|dbj|BAH46852.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 1024

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++VD   I   +   +     + V  ATS  +A    E+  + + ++ D  M      
Sbjct: 698 RIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILERNPV-DLVISDVMMPHVSGY 756

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ V  L      E +IAG +AGAN ++ KP +   L+  ++ L + 
Sbjct: 757 ELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAGANDYVKKPVDAWELKARVKALTEF 816

Query: 121 QKSKDENQFLD 131
           + S DE   ++
Sbjct: 817 KISFDERLRME 827


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF V +A    EA E   K    + L++D  M  + 
Sbjct: 1   MQTILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEIL-KNNEVHLLIMDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRATLKIRE-NSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRR 118


>gi|198277651|ref|ZP_03210182.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135]
 gi|198269348|gb|EDY93618.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135]
          Length = 1021

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D +  VR   + L  D  + V EA +  E      K  +P+ +V D  M  +    
Sbjct: 772 VLVIDDNQDVRDYVKMLLQDK-YTVIEAVNGQEGIRQAMK-YVPDVVVCDVMMPVMDGIE 829

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++     + + V  L      E+ I G  +GA+S+L KPFN + L   +R L   +
Sbjct: 830 CCKRLKSELQTSHIPVLMLTAYAMDEQRIQGYDSGADSYLTKPFNAKLLLARIRNLIDNR 889

Query: 122 KSKD 125
           K   
Sbjct: 890 KRLK 893


>gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus]
 gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus]
 gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
 gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus]
 gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus]
 gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
          Length = 227

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  +        G+   +ATS  EA    E +     L++D  M  + 
Sbjct: 1   MIDILLVDDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFR-LLLLDIMMPEMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D + +I G + GA+ ++ KPF+ E L   +  + 
Sbjct: 60  GWETCNKIRE---FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    + +         G+ V+      E  +  E E+ P+ +++D  + G   +
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVE-EIHPDLILLDIMLPGINGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    ++V +  +  + D    + G  +GA+ ++ KPF  E L   +R   + 
Sbjct: 64  EICRKIRQH---SNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRK 120

Query: 121 QKSKDENQFL 130
            K  +  + +
Sbjct: 121 SKQLNIIREI 130


>gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1346

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+LLVD +   R   +       + V EAT+  +  +       P+ +V D SM  +   
Sbjct: 1084 SILLVDDNDDFRNYLKESLEKS-YTVTEATNGKDGWQKALSGH-PDLVVSDVSMPVMDGI 1141

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L      E  I G +  AN +L KPF+ E L   ++ +  +
Sbjct: 1142 ELCRKIKTDKRTSFIPVILLTALGREEDHIRGLQTEANDYLTKPFSFEILNTRIKNMISL 1201

Query: 121  QKSKDENQFLD 131
                  NQ L 
Sbjct: 1202 ------NQRLK 1206


>gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 227

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+ D    +      +     + V    +  +A ++       + +++D  M G+ 
Sbjct: 5   MK-LLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDY-DGIILDIMMPGMD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    V +L  + + +  I G   GA+ +L KPF+   L   +R + + 
Sbjct: 63  GTEVLKKIREKGLSTPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRR 122

Query: 121 Q 121
           +
Sbjct: 123 K 123


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K  +         V  A    EA E  + +   + +++D  +  + 
Sbjct: 8   MSRVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQE-FDIILLDLMLPKID 66

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    ++V +  +  + +    I G   GA+ ++ KPFN   ++  M+ + 
Sbjct: 67  GLSVCRQIRE---FSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIM 123

Query: 119 QM 120
           + 
Sbjct: 124 RR 125


>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +       + R      G  V   T    A +   +   P+ LV+D  M     +
Sbjct: 7   RVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDE-TRSRHPDLLVLDIMMPKLDGM 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R     + V +  L    D + ++ G + GA+ ++ KPF+   L   +R L + 
Sbjct: 66  DVCRVLRSD---SQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRR 122

Query: 121 QKSKD 125
            + + 
Sbjct: 123 SRPES 127


>gi|257093200|ref|YP_003166841.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045724|gb|ACV34912.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 250

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +R +        GF         +  +   +   P+ LV+D  + G  
Sbjct: 11  MKKILLIDDDSELRPLLATYLGRHGFDTLLLPDTRQ-LDAFLQRYQPHLLVLDLMLPGED 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  R    G  + V  L    +    + G   GA+ +L KPF+   L   +  + + 
Sbjct: 70  GLAACRRLRARGETLPVIMLTARDEPVDRVIGLEMGADDYLGKPFDPRELVARIEAVLRR 129


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A     +E  P+ +V+D  +  +   
Sbjct: 24  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTA-REFRPDAVVLDMMLPDMDGL 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 83  AILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142

Query: 123 SKDE 126
           + D 
Sbjct: 143 AADR 146


>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 237

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + KV  +     GF V  A     A     +E  P  +V+D  + G   +
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSV-REFEPALIVLDLMLPGFDGM 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L    +    + G  AGA+ +++KPF    L   ++ L + 
Sbjct: 72  EVCRRIR---TFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128

Query: 121 QKSKD 125
            ++  
Sbjct: 129 PRASS 133


>gi|224368229|ref|YP_002602392.1| transcriptional regulator (FIS family protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223690945|gb|ACN14228.1| transcriptional regulator (FIS family protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 450

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + +    +  D GF V  A +  EA +  E E  P+ +++D  M G+    
Sbjct: 5   ILIVDDEASIIESLEGILADDGFEVSHAFNGYEALKKIEAES-PDIVLLDIWMPGMDGIE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                     ++ V  +      E  +   ++GA  FL KP + + +   +      ++ 
Sbjct: 64  TLKEIKKNFPNLPVVMITGHGTIEAAVDATKSGAFDFLEKPLSIDKIIVTINNALNFRRL 123

Query: 124 KDENQFL 130
           ++EN++L
Sbjct: 124 EEENRYL 130


>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|156743542|ref|YP_001433671.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234870|gb|ABU59653.1| putative PAS/PAC sensor protein [Roseiflexus castenholzii DSM
           13941]
          Length = 619

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 6/136 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D     R V + L    G  V  A +  EA      E  P+ L++D  M  +  F
Sbjct: 6   TILIADDDPGARLVLQRLLTREGHRVLMAQNGAEALRQSI-EYTPDLLLLDVLMPEIDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      ++ +  +    D +  + G  AGAN F+ KPF+   L   +R + ++
Sbjct: 65  EVCRQLRNHTRLREIPILLITSLGDQQSRVEGLSAGANGFITKPFDMAELLAHVRTITRL 124

Query: 121 ---QKSKDENQFLDAI 133
              ++   E +    +
Sbjct: 125 NRYRRLLSEQERFQRL 140


>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
 gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
          Length = 239

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++LKPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|294678156|ref|YP_003578771.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
 gi|294476976|gb|ADE86364.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Rhodobacter capsulatus SB
           1003]
          Length = 466

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD     R V +   +   +   +A +  EA      E LP+ +++D  +     +
Sbjct: 4   KILIVDDVATNRIVLKVKLSGARYETVQAGTGQEALRLVTLE-LPDLVLLDVQLPDISGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  PL  ++ V  +      E  +   RAGA+ F++KPF   TL   +R L +M
Sbjct: 63  EVCRRLKSDPLTQNLPVIMVTAFPSPETRLEALRAGADDFIVKPFEELTLLARLRSLMRM 122

Query: 121 QKSKDENQFLDA 132
           +++ +E +  ++
Sbjct: 123 RETDEELRLRES 134


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKALRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|209522684|ref|ZP_03271242.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209496733|gb|EDZ97030.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 398

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      ++   +  + G+ V +A +   A +  E E  P+ +++D  M  +    
Sbjct: 13  ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAET-PDLILLDIMMPELDGYQ 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
              +++  P   ++ + +L    D    +     G   ++ KPF+ + +   +R      
Sbjct: 72  VAKYLKDDPTTREIPIIFLSALSDTMDKVLAFDVGGVDYITKPFHVQEVLARVRTQLTIS 131

Query: 119 -QMQKSKDENQFLD 131
            Q Q+   +NQ L+
Sbjct: 132 QQKQQLITQNQQLE 145


>gi|170077988|ref|YP_001734626.1| two-component system response regulator [Synechococcus sp. PCC
           7002]
 gi|169885657|gb|ACA99370.1| two-component system response regulator [Synechococcus sp. PCC
           7002]
          Length = 131

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC------EKELLPNYLVIDE 54
           M  +L+V+ S   R++   L    G  V  A    EA E          E LPN +V+D 
Sbjct: 1   MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDI 60

Query: 55  SMEGV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            M  +   E    ++  P   ++ +     + +      G + GA++++ KPF    L  
Sbjct: 61  VMPRMNGYELCRRLKSDPKIQNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIG 120

Query: 113 AMRELPQ 119
            +++L +
Sbjct: 121 TIKQLLR 127


>gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 223

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA    E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIE-QKEFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|149908621|ref|ZP_01897283.1| FOG: CheY-like receiver [Moritella sp. PE36]
 gi|149808455|gb|EDM68392.1| FOG: CheY-like receiver [Moritella sp. PE36]
          Length = 120

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++ +      G+ V  A    +     +     + ++ D +M  + 
Sbjct: 1   MKRILAVDDSVSIREMVQFTLKQAGYQVDSAVDGVDGLAKAKTGN-FDLIISDINMPRMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R         +  L  E   +K +AG  AGA  +++KPFN E L   ++++ 
Sbjct: 60  GISLIRKLRSESAYKFTPILMLTTESGTDKKMAGKSAGATGWIVKPFNPEKLIATVKKVL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48]
 gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48]
          Length = 227

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|186681380|ref|YP_001864576.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463832|gb|ACC79633.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1177

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD +  +R     +F   G+ V  A +  E      KE++P+ +V D  M     L
Sbjct: 820 SILVVDDNPDLRTYVSEIFRRNGYYVRTARNGYEG-HSLAKEIIPSLIVTDLMMPLVSGL 878

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R         +  L  +VD E  I G   GA+++L KPFN   L   +R L  +
Sbjct: 879 EMIQMIRNEEKLKGTPIILLTAKVDEETRIEGTEHGADAYLAKPFNDRELLAEVRNLLAL 938

Query: 121 QKSKDE 126
           ++++  
Sbjct: 939 KENERR 944



 Score =  102 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       +    F    + V  ATS   A +   +E     ++ D+ M  +   
Sbjct: 10  KILVVDDEPDNLDLLYRTF-YRDYKVLRATSGPAALDLLAQEGEVAVIISDQRMPMMSGT 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118
                      D+    L    D E ++    AG    ++ KP+  E L+  +R+  
Sbjct: 69  EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125


>gi|307727152|ref|YP_003910365.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307587677|gb|ADN61074.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  +      ++  P+ +V+D  M G     
Sbjct: 7   VLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQ-MRAALEQGTPDLIVLDLMMPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50]
 gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)]
 gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)]
          Length = 239

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   NILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    +RK+  +  +  GF + EA     A E   K    + +V+D  +    
Sbjct: 1   MNKILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKF-KNNNIDLIVLDLMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +   + +R++   +DV +  L  +   E  + G   GA+ ++ KPF+ + L   ++ + 
Sbjct: 60  GITVCSKIREI---SDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVL 116

Query: 119 QMQKSKDENQ 128
           +  K +DE +
Sbjct: 117 KRIK-EDEKE 125


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A     A +   +    + +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SIVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LIRR 120


>gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 224

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  ++LV+    +         +FG  V          E  + E   + L++D  M G+ 
Sbjct: 1   MAKIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNES-FDLLILDIIMPGMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQ        V  L      + ++ G  AGA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GLELCRMYRQRFGY-HSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRSK 122


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +      +  F   +A +  EA +  + E     +++D  M  +    
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIID-EKEIELVLLDIMMPQIDGIE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           A +R      ++ +  +  + +    I G  AGA+ ++ KPFN   L   ++   +  +
Sbjct: 64  ACMRIR-KDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQ 121


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +      +  F   +A +  EA +  + E     +++D  M  +    
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIID-EKEIELVLLDIMMPQIDGIE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           A +R      ++ +  +  + +    I G  AGA+ ++ KPFN   L   ++   +  +
Sbjct: 64  ACMRIR-KDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQ 121


>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 241

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M     ++L+V+    +R +         +    A +  +A         P+ +++D  +
Sbjct: 2   MKGTKPNVLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAI-MLAAANNPDIILMDLGL 60

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
             +   I  +R++   + V +  +    D    +A    GA+ +L KPF+   L   +R 
Sbjct: 61  PDMDG-IEVIRKIRSWSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRA 119

Query: 117 LPQMQK 122
             +  +
Sbjct: 120 TIRRVQ 125


>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 228

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWTVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQKSKDEN 127
            + + S   N
Sbjct: 117 MESRYSSAVN 126


>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  ++A    +A +  + E+  + +++D  M  +  F
Sbjct: 4   NILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
 gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
          Length = 234

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +L+VD    + ++        GF V  ATS  +A E    E  P+  ++D  M
Sbjct: 1   MKENSTKVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAP-EFKPDAFILDVMM 59

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            G+  F    +   LG +  V +L  +   E  I G   GA+ ++ KPF+ E +   +R 
Sbjct: 60  PGMDGFELLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRV 119

Query: 117 LPQMQKSKDEN 127
           + +      E 
Sbjct: 120 ILRRGAQVAEE 130


>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 229

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V       E  +   KE   + L++D  + G  
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDY-DLLILDLMLPGTD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    +  +  +  + +    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICKKVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +        ++ G+ V  A            E   + +++D  +      
Sbjct: 4   RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETW-DLVILDWWLPVEDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V +L       + + G  AGA+ +L KPF  + L   +R L + 
Sbjct: 63  QLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRR 120


>gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 242

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +   L    G+ V  A    + R     E   + +V+D  + G     
Sbjct: 10  ILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLI-ESSVDLVVLDLMLPGEDGLT 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +   T++ V  L  + D    + G   GA+ +L KPF    L   +R + +  +S
Sbjct: 69  LC-RDLRASTNIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRRTRS 127


>gi|117926657|ref|YP_867274.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610413|gb|ABK45868.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 241

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+     R +        GF V    S              + +V+D  + G    
Sbjct: 6   RILIVEDDEPTRTMVADYLRGHGFEVRTLASGET-MNSTLAAWPADVIVMDLMLPGEDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +       D+ +  L    +    I G   GA+ +L KPF+   L   +R + + 
Sbjct: 65  TLCKRLSVDKQTADIPIIMLTARGEETDRIVGLEMGADDYLSKPFSTRELLARLRSVLRR 124

Query: 121 QKS 123
            ++
Sbjct: 125 ARA 127


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+    + +          + V          +        + +++D  +    
Sbjct: 1   MTNILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKAL-NKSYDLIILDLMLPNIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + +    +AG   GA+ +++KPF+ E L   +R + 
Sbjct: 60  GLEICRQIRQEYS---TPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
 gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
          Length = 257

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +  +        G+ V +A          + E   +  ++D  M 
Sbjct: 21  MKAKAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMP 80

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           G+    + V+++   + + V  L  +      I G   GA+ ++ KPFN   L   ++  
Sbjct: 81  GMDGL-SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKAN 139

Query: 118 PQM 120
            + 
Sbjct: 140 LRR 142


>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A      +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL--LAGQSGVDLVVLDLGLPGMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 59  GLEVCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 118


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|16329388|ref|NP_440116.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
 gi|1651869|dbj|BAA16796.1| NarL subfamily [Synechocystis sp. PCC 6803]
          Length = 282

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           SLLLVD    VR+  +    D G F V  A +  EA ++  +  LP  ++ D  M     
Sbjct: 57  SLLLVDDEPGVRESVQAFLEDSGDFKVDLAANATEAWDYL-QHHLPALVISDIMMPQVDG 115

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R+      + V +L         I G + G ++FL KPF+ + L   +R L  
Sbjct: 116 YQFLQKLREDARFQSLPVVFLTARGMTGDRIQGYQTGCDAFLSKPFDPDELEAIVRNLLA 175

Query: 120 MQKSKD 125
            Q++  
Sbjct: 176 RQQASS 181


>gi|332826438|gb|EGJ99267.1| hypothetical protein HMPREF9455_00300 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1371

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD +    +    LF D  + +  A    E       + LP  ++ D  M  +    
Sbjct: 1123 LLIVDDNEDFCEFITSLFID-NYNIVTANDGEEGLRIVLDQ-LPEIILCDVMMPKMDGYE 1180

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F   V+     + + +  L  +   E   +G  AGA+ ++ KPFN + L   + ++ + Q
Sbjct: 1181 FCRQVKGDIRTSHIPIILLTAKSSEENRYSGIEAGADDYIAKPFNIDMLTLKIAKIIEKQ 1240

Query: 122  KSKD 125
            K   
Sbjct: 1241 KKLQ 1244


>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
 gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +R++         + V +A     A +  +++  P  +++D  + G   +
Sbjct: 4   KILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLDEK--PKLILLDWMLPGRSGI 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +FI ++++    T + +  L      +  I     GA+ ++ KPF+ + L   +  L + 
Sbjct: 62  QFIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRR 121


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+   I+ +  R+     G+ V  A       E   ++  P+ +++D  +  + 
Sbjct: 3   MSTILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRD-QPDMVILDVMLPRLD 61

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ      V +  L    D    IAG   GA+ ++ KPF+   L   +R + 
Sbjct: 62  GFSVCRILRQESE---VPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIM 118

Query: 119 QM--QKSKDENQFLDA 132
           +   ++     + LDA
Sbjct: 119 RRSDRRISALREVLDA 134


>gi|312879224|ref|ZP_07739024.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310782515|gb|EFQ22913.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 241

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++ R      GF     T               +  ++D  +     
Sbjct: 6   KRILVVDDDGELGELLRTYLEREGFACLHVTDGETGLREALSGRQ-DLAILDVMLPEKSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +  +R     +D+ V  L    D    + G   GA+ ++ KPF    L   +R + +
Sbjct: 65  FDVLREIRAR---SDLPVLMLTARGDPVDRVVGLELGADDYIPKPFLPRELAARVRAVLR 121

Query: 120 MQKSKDEN 127
               K+E+
Sbjct: 122 RTDRKEED 129


>gi|299147659|ref|ZP_07040723.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514446|gb|EFI38331.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1343

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R     +     + +    +  +A     +E  P+ ++ D  M  +  
Sbjct: 1078 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDAL-IIIREFNPDLVISDIMMPEMSG 1135

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    D + M+ G   GA++++ +PF+   L+  ++ L  
Sbjct: 1136 DELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITRPFSVGILKATIKNLLA 1195

Query: 120  MQKSKDE 126
             +    +
Sbjct: 1196 NRALLRQ 1202


>gi|331663726|ref|ZP_08364636.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli TA143]
 gi|284922212|emb|CBG35294.1| acetoacetate metabolism regulator (two-component system response
           regulator) [Escherichia coli 042]
 gi|331059525|gb|EGI31502.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli TA143]
          Length = 461

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|237711465|ref|ZP_04541946.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
 gi|229454160|gb|EEO59881.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 9_1_42FAA]
          Length = 1357

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGVDVAIS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+      + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQLRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
 gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
 gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
 gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+VD    +R +      + G+ V +A    EA +  +KE   + +V+D  M  +
Sbjct: 1   MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMVLDIMMPKM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR+     ++ +  L  + +    I G   GA+ +L KPFN   L   ++ L
Sbjct: 60  DGIEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSL 116

Query: 118 PQM 120
            + 
Sbjct: 117 IRR 119


>gi|222082591|ref|YP_002541956.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727270|gb|ACM30359.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 5/128 (3%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A    E R+        + +V+D  M 
Sbjct: 1   MQRTPHVLVVDDHKEIRDLLAKYLAKNGLRVSTANGGAEMRQQLRTAT-IDLVVLDIMMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           G     +  R +   + V +  L    D    I G   GA+ ++ KPFN   L   +R L
Sbjct: 60  GEDGL-SLCRSLRQTSMVPIVLLTAVSDETDRIIGLELGADDYVTKPFNPRELLARIRAL 118

Query: 118 PQMQKSKD 125
            +   +  
Sbjct: 119 LRRANATA 126


>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 239

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 48/131 (36%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  + +   +D G     A       E+       + +++D  +  +  
Sbjct: 4   KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNY-DVIILDMMLPKLDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       V +  L    + +  +    AGA+ ++ KPF+   L   +    +  
Sbjct: 63  LEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRY 122

Query: 122 KSKDENQFLDA 132
           + + E  F+++
Sbjct: 123 RPEKEPSFINS 133


>gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
           25986]
 gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
           25986]
          Length = 259

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +         G+ V  A     A +    E   + +++D  +    
Sbjct: 1   MARILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLAL-ERNYDLILLDVLLPQLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  VR+     DV V  +         +AG  AGA+ +L KPF  E L   +R   
Sbjct: 60  GMEVLRRVRKH---KDVPVIMVTARDAVMDKVAGLDAGADDYLTKPFAIEELFARIRVAL 116

Query: 119 QMQKSKD 125
           +  ++  
Sbjct: 117 KRSEAVR 123


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 234

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R      GF+V  A +  +  +   +E   + +++D  + G+ 
Sbjct: 1   MKKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEY-DLILLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R++    D  V  +    +    I G   GA+ ++ KPF+   L   ++     
Sbjct: 60  GF-EVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGR 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|302386981|ref|YP_003822803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197609|gb|ADL05180.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 237

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R+V R    + G+ V+EA +  +A     +    + +++D  M G   
Sbjct: 5   QQILVVDDDADIREVLRIQLENKGYSVWEAVNGNDAVAAVSENPDIDLIILDIMMPGLSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +R++   T   V +L  +       A    G + +L+KPF++  L   +R L +
Sbjct: 65  IDACTQIRKI---TSAPVLFLTAKSKESDKTAAYENGGDDYLVKPFSQAELLMKVRSLLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    +R++      + GF + +A    EA    E E   +  V+D  M    
Sbjct: 1   MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKME-EFRIDLAVVDIMMPFKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +++     D+ V  +    +    + G   G + +++KPF+ + +   ++ L 
Sbjct: 60  GWELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALL 116

Query: 119 QMQKSKDEN 127
           +  + +  N
Sbjct: 117 RRYRVEANN 125


>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD    +R++ R    + G   V EA +  +A    E E + + +++D  M  +
Sbjct: 1   MAKILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKV-DMVILDIMMPEM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R      D+ +  L  + +  +++ G   G + +L+KPF    L   ++ L
Sbjct: 60  DGWDLCRELR---RYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKAL 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LKRYQ 121


>gi|209525938|ref|ZP_03274472.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209493615|gb|EDZ93936.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 369

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R+    L     F V  A +     E   K  LP+ ++ D  M    
Sbjct: 1   MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVEQAHKH-LPDLILCDVMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R       +   +L  + D + +  G   GA+ +L KP + E L  A+    
Sbjct: 60  GYGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIAIRL 119

Query: 119 QMQKSKDENQFLD 131
           + Q    +   + 
Sbjct: 120 EKQSLIKQQSEIQ 132


>gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 242

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG-- 58
            +LL++    +R          GF V        A +F   E     + +++D  + G  
Sbjct: 13  KILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLN 72

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R   L     +  L  + +    + G   GA+ +L KPF    L    R L 
Sbjct: 73  GLELCRKIRNEELY--TPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALL 130

Query: 119 QM-QKSKDENQFLDAI 133
           +  ++ K++ Q ++ I
Sbjct: 131 RRSKRGKEKKQKIETI 146


>gi|320105191|ref|YP_004180782.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
 gi|319752473|gb|ADV64233.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
          Length = 145

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ S  V ++      D GF V  AT    A +  ++E  P+ +V+D  +  +  F
Sbjct: 4   TILIVEDSPTVLRMASAALEDGGFRVLTATDGEAALQLVKREK-PDLIVLDIILPKINGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++  P    + +  L  +        G R GA+ +L KPF  E L   +  L   
Sbjct: 63  QVCRHLKNDPASRHIKILLLSSKSGESDRYWGLRQGADDYLTKPFEPEGLVSTVTRLLNR 122


>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 223

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + +V         + V       +A ++       + ++ D  M    
Sbjct: 1   MK-ILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEY-DLIITDIMMPKID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E I  +R    G    V  L  +   +  I G  +GA+ +++KPF  + L   +R L 
Sbjct: 59  GYELIKQLRV--KGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLM 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   LL+VD    +  + R +    G+ V  ATS  +A +    E  P+ +V+D  + G+
Sbjct: 1   MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKR-TLERAPDLIVLDVMLPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R    G +V +  L         + G   GA+ +++KPF  E L   ++ L +
Sbjct: 60  NGLEVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLR 119

Query: 120 MQKSKD 125
             + + 
Sbjct: 120 RNQVER 125


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DVILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|168699248|ref|ZP_02731525.1| response regulator receiver domain protein (CheY-like) [Gemmata
           obscuriglobus UQM 2246]
          Length = 406

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+ +   R +        GF   EA +  EA +   +    + ++ D  M     
Sbjct: 161 KRILVVEDNDANRVMLCRRLGSRGFQTVEAANGREALDAVRRAP-FDLVLCDIMMPEVDG 219

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  ++       + V  +    +  +++     GA  +L KP++   L   +     
Sbjct: 220 YEVLRQLKADQNLQSLPVIMVSAIDETAEVVRCIEMGAEDYLHKPYDPVLLHARVNACLD 279

Query: 120 MQKSKDEN 127
            ++ +D+ 
Sbjct: 280 KKRLRDQE 287



 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+   + R++ R      G+ V  A +   A      E  P+ +++D  +  + 
Sbjct: 1   MPHVLLVEDEQVNREMFRRRLERKGYTVLPADTGLGAVALARSE-RPDVILMDLGLPDID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P    + +  L     F+       AG   F  KP N + L   + E  
Sbjct: 60  GWEATRRLKADPATAPIPIIVLSAHATFDAKDKAFAAGCQDFETKPVNWDALYRKLDEWL 119

Query: 119 QMQK 122
              +
Sbjct: 120 AKGR 123


>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA +    E   N +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++   T++ + +L  +   +  I G  +G + ++ KPF+   L   +  + + 
Sbjct: 63  -EAIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. ORS278]
          Length = 246

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+     R +      +    V  AT   E       +   + L++D  + G     
Sbjct: 8   ILVVEDDRETRTLIAKYLRNNACNVTTATDGRE-MTRIMGDHRIDLLILDVMLPGEDGLT 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R++   + V +  L    +    I G   GA+ +L KPFN   L   +  + + Q +
Sbjct: 67  LC-RKLRAESQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125


>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 254

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    ++  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CMR15]
          Length = 230

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 8   DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAH 65
           +    + ++        G     A +  +A      ++LP+ +++D  + G     F   
Sbjct: 2   EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLM-SDVLPDLVLLDWMLPGKSGVMFAKE 60

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
           +R       + +  L    + +  I G   GA+ ++ KPF+ + L   ++ + + +  +
Sbjct: 61  LRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQ 119


>gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 231

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 8/131 (6%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +L+VD    + ++ +      G++V  A S  EA          N L++D  M
Sbjct: 1   MKENKYRILVVDDEQDLCEILKFNLETEGYVVETANSAEEA--MMMDISSFNLLLLDVMM 58

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +  F     +++ P    + + +L         + G   GA+ ++ KPF+   +   +
Sbjct: 59  GEMSGFSMAKKLKENPKTASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRI 118

Query: 115 RELPQMQKSKD 125
           R + +     D
Sbjct: 119 RAVIRRTNETD 129


>gi|282901307|ref|ZP_06309233.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193802|gb|EFA68773.1| Two Component Transcriptional Regulator, LuxR family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 210

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + R      G+ V  A +   A    E + +P+ ++ D  M  +  
Sbjct: 5   KRLLLIDDDPNLILLVRDYLGFRGYDVLTAENGRTALGVLE-QDIPDMIICDVMMPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VRQ    + V V +L  +      + G   GA+ +++KPF  E L   +    +
Sbjct: 64  YTFVEQVRQNERTSWVPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVESSLK 123

Query: 120 MQKSKDENQ 128
                 E+Q
Sbjct: 124 QTSRWKEHQ 132


>gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 226

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    + +  R   +  G+ V  A+S   A      E  P+ +++D  +    
Sbjct: 1   MTRVLVIDDEPQILRALRINLSVRGYEVVTASSGAGAL-RAAAEHKPDVVILDLGLPDIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +A +R         V  L    D    +    AGA+ ++ KPF  +     +R   
Sbjct: 60  GIDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAV 116

Query: 119 QMQKSKDENQF 129
           +   +  E + 
Sbjct: 117 RRNTAASEVEQ 127


>gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1329

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +        +   + V  A +  EA +  E++ + + ++ D  M  +   
Sbjct: 1083 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1140

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + V  L  + + E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1141 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1200

Query: 121  QKSKDE 126
            ++    
Sbjct: 1201 RERLRR 1206


>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KRILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623317|gb|EEX46188.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1329

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +        +   + V  A +  EA +  E++ + + ++ D  M  +   
Sbjct: 1083 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1140

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + V  L  + + E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1141 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1200

Query: 121  QKSKDE 126
            ++    
Sbjct: 1201 RERLRR 1206


>gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 241

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R + +      GF V  A    E  +   +      LV+D  + G     
Sbjct: 9   ILVVDDHADIRDLLKRFLEQHGFKVTCARDGKE-MKRLLENGHFTLLVLDLMLPGEDGLT 67

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +   + + V  L    +    I G   GA+ +L KPFN   L   +R + +    
Sbjct: 68  LC-RDLRARSSLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANL 126

Query: 124 KDENQ 128
             ++Q
Sbjct: 127 MPDSQ 131


>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD +    ++        GF V    S  +A +       P+ +++D  M  +  F 
Sbjct: 8   ILLVDDTVANLQLVSDFLMKAGFNVLAVKSGIQALKIV-AITEPDLILLDVVMPEMDGFE 66

Query: 63  -IAHVRQMPLGTDVFVYYLLM---EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               ++      D+ V ++       +    I G + GA  ++ KP   E +   ++   
Sbjct: 67  VCRRLKAQEETQDIPVIFMTAVADRANPSYKIKGLKLGAVDYISKPIQLEEVLLRVQTHL 126

Query: 119 QMQKSKDENQFLDA 132
           Q++    +    +A
Sbjct: 127 QLRALTQQLTEQNA 140


>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    + +   H+ +  G+ V    +     E        + L++D  +    
Sbjct: 1   MK-ILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSY-DLLILDWMLPNKP 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R    G    V +L  +      + G  AGA+ +L+KPF    L   +R L 
Sbjct: 59  GIEICQALRSQ--GNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
 gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
          Length = 258

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    VR++ +   +  G+ +  A    EA +   +E  P+ +++D  M      
Sbjct: 15  TILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWRED-PDLVILDVMMPKRDGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L    D    I G R GA+ +L+KPF+ + L   ++ + + 
Sbjct: 74  YVCQEIRRESS---TPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRR 130

Query: 121 QK 122
            +
Sbjct: 131 TQ 132


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  LL+V+    +R+       +  + V E     EA  +  +E   +  ++D  +    
Sbjct: 1   MK-LLVVEDDPDLRRQLVTALENKNYTVEETADGEEAL-YLGQEYPYDLAIVDLGLPKLS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E I   R    G +  +  L    D++  + G  AGA+ +L+KPF+ E L+  +  L 
Sbjct: 59  GIEVIRQWR--DDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|134299848|ref|YP_001113344.1| two component sigma-54 specific Fis family transcriptional
           regulator [Desulfotomaculum reducens MI-1]
 gi|134052548|gb|ABO50519.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum reducens MI-1]
          Length = 454

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L++D    +           G+ VF +T      +   KE  P+ +++D  M  +  
Sbjct: 5   NKILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKET-PSLVILDLKMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               V+   L   + +  +      +  I   + GA  ++ KPF+ + L+  +R+   + 
Sbjct: 64  LEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVN 123

Query: 122 KSKDENQFLDA 132
             ++E  FL +
Sbjct: 124 HLQEEVTFLRS 134


>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
           1118]
          Length = 228

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            + + +++
Sbjct: 119 SQKQVKDE 126


>gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 257

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+   ++R+        +G+ V  A                + L++D  + G   +
Sbjct: 15  TVLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGH-DLLLLDVMLPGLDGI 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+  +     +  +    D   +I+G  AGA+ +++KP +   L   +R L + 
Sbjct: 74  GLCRRIRETSMD---PILMMSARGDDLDVISGLEAGADDYVVKPVDTAVLVARIRSLLRR 130


>gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968]
 gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150]
 gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968]
 gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150]
          Length = 806

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+ +  + +    + +   + +  A    E  E    E LP+ ++ D  M  +  +E
Sbjct: 458 VLIVEDNPAMNEFLCEILSKE-YRIICAHDGKEGLEKAI-EFLPHVIISDIMMPDMNGIE 515

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R+        +  +  + D +  +   + GA  ++ KPF+ + L+  +  L  ++
Sbjct: 516 MVHAIRKHSSLLSTPIMIVTAKADDDLRVRILQEGAQDYMTKPFSAQELKARIANLVLVK 575

Query: 122 KSKDENQF 129
            ++DE + 
Sbjct: 576 NAEDELER 583


>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
 gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    ++ +        G+    A +  +A      +  P+ +++D  +  
Sbjct: 1   MNKPEILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQ-QPDIMLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      + ++   + + +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDGV-QVIAKVRTWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATL 118

Query: 119 QMQKSKDENQFLDA 132
           +  +    +  +++
Sbjct: 119 RRLQYLSASAEMES 132


>gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 237

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             ++++D    +R + +    D GF         +  +   ++  P+ +++D  +     
Sbjct: 3   KKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKD-LDKILQKATPDLIILDLMLPDENG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R   +   + +  L  + D    I G   GA+ +L KPFN   L   +  + +
Sbjct: 62  LDICKRLRVNKI--KIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFR 119

Query: 120 MQKSK 124
             + +
Sbjct: 120 RHEME 124


>gi|162452271|ref|YP_001614638.1| hypothetical protein sce3998 [Sorangium cellulosum 'So ce 56']
 gi|161162853|emb|CAN94158.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 584

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD S   R V   +  + G+    A     A     +E   + +++D +M G   L
Sbjct: 114 TILVVDDSRGNRDVLCRVLQNNGYRTASAEDGPRALGLAARE-RFDAVLLDVNMPGISGL 172

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +RQ     ++ V  +      E ++   + GAN  + KP + + L   +     +
Sbjct: 173 GVLSALRQSRSQAELPVIMVTTRGASEDVVESLKLGANDHVTKPIDFDILLGRLDTQLTL 232

Query: 121 QKSKDENQFLDA 132
           ++S+++   L A
Sbjct: 233 KRSREQLSQLAA 244


>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+VD    +R +      + G+ VF+A+   EA +  EKE   + +V+D  M  + 
Sbjct: 1   MNNILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEE-IHLIVLDIMMPHMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      ++ +  L  + +    I G   GA+ ++ KPFN+  L   ++ L + 
Sbjct: 60  GLEVCRRVREKY-NIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRR 118


>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 226

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD      ++  +L  + G+ VF A       +  E+   P+ +++D  M      
Sbjct: 2   NILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHN-PDLILLDVMMPKIDGF 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +D+ + +L      +  + G + G + +L+KPF    L   +  + + 
Sbjct: 61  EVCRQIRRN---SDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRR 117

Query: 121 QKS 123
           + +
Sbjct: 118 RNA 120


>gi|260428849|ref|ZP_05782826.1| response regulator receiver modulated serine phosphatase
           [Citreicella sp. SE45]
 gi|260419472|gb|EEX12725.1| response regulator receiver modulated serine phosphatase
           [Citreicella sp. SE45]
          Length = 415

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S +  K+   +   +GF V EA+S  +A E C   ++P+ ++ D  M G+  
Sbjct: 19  QRVLVVDDSPVQLKILCAVMRRWGFKVLEASSGEQALEICRT-MVPDAVLSDWMMPGMDG 77

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    R++   +  +   L  + + E++  G  AGA+ FL KP N   LR  +    +
Sbjct: 78  LEFCRQFRELKRDSYGYFILLTSKGEKEEIARGLDAGADDFLTKPVNSYELRARINAGAR 137

Query: 120 MQKSKDEN 127
           +   + + 
Sbjct: 138 ILSMQRQL 145


>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
 gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 234

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF+A +  E  +  ++E   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDREN-IHLVLLDIMMPGMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R++    ++ +  L         I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMC-RKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+         E  E C  E   + +++D ++ G+    
Sbjct: 3   ILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENY-DLILLDLNLPGIDGLD 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +     +   V  L      E  + G   GAN +L KPF+ E L   +R L + +  
Sbjct: 62  ILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRFI 121

Query: 124 KD 125
           ++
Sbjct: 122 QE 123


>gi|94500213|ref|ZP_01306747.1| two component system response regulatory protein [Oceanobacter sp.
           RED65]
 gi|94427786|gb|EAT12762.1| two component system response regulatory protein [Oceanobacter sp.
           RED65]
          Length = 227

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  LLLVD    +  +     +  GF V  A    +A +   +E  P+ +V+D  M    
Sbjct: 1   MSRLLLVDDDQALNSLLTEYLSQEGFEVINAYDGKQALDSLTQE--PDLMVLDVMMPELN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ  +   + +  L  + D    I G   GA+ +L KP N   L   +  + 
Sbjct: 59  GIEVLKQLRQKDI--QLPILMLTAKGDDLDRILGLELGADDYLAKPCNPRELLARINAIL 116

Query: 119 QMQK 122
           +   
Sbjct: 117 RRSH 120


>gi|78356986|ref|YP_388435.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219391|gb|ABB38740.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 647

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+V+ + I R++ + L    G  V  A    EA    E     + + +D  M  +  
Sbjct: 292 TSVLVVEDNKINRQIAKELLEGVGVRVTLAGDGLEALALVE-NYDFDLIFMDIQMPRMDG 350

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ+       V  +             RAG N  + KP + + L  A+    +
Sbjct: 351 LEACRRIRQLQHKKQPPVVAMTAHALAGDRETSLRAGMNDHITKPIDPDELYAALANWIK 410

Query: 120 MQKS 123
              +
Sbjct: 411 RNHA 414



 Score = 91.8 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVL 60
             +L+ D +   R + + +     F V  A S  EA +  +K   P   +++D  M G+ 
Sbjct: 145 TRVLVADDNFTSRAILKEVLESLRFDVTLAESGEEAVDLVQKTAEPFKVVLLDWRMPGLD 204

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 H+RQ+ L     +  +      E +        +  LLKP  R  L   + +  
Sbjct: 205 GLACARHIRQLDLPVRPTILIITAYGREEVLGEIPSEIIDGVLLKPVARSLLLNTILDAL 264

Query: 119 QMQKSKDENQ 128
               S+ E +
Sbjct: 265 PEYSSRPEQE 274


>gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
 gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
          Length = 239

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ +     R     L    G+ V        A     +    + + +D  M    
Sbjct: 1   MPRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSA-SKMIESKKFDLVCLDVMMPMKS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R         V ++  + D    + G   GA+ ++ KPF    +   ++ + 
Sbjct: 60  GFDVCRLLRAED--HRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +  +      + GF V +  +  EA + C +    +  ++D  +  +
Sbjct: 1   MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMD-CIRTTRLDLAILDIMLPDI 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+        V  L  +V+    I G   GA+ ++LKPFN   +   ++  
Sbjct: 60  DGFTICQKIREKYFY---PVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQ 116

Query: 118 PQM 120
            + 
Sbjct: 117 LRR 119


>gi|327405174|ref|YP_004346012.1| Crp/Fnr family transcriptional regulator [Fluviicola taffensis DSM
           16823]
 gi|327320682|gb|AEA45174.1| transcriptional regulator, Crp/Fnr family [Fluviicola taffensis DSM
           16823]
          Length = 352

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +  +R+    +     + V  A +  E      KE  P+ ++ D  M  + 
Sbjct: 1   MKKILLIEDNIDIRENTAEILELAQYEVITAENGKEGVRLAIKET-PDLIICDIMMPVLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + +      +   +L  + +   +  G   GA+ +L KPF+ + L  A+    
Sbjct: 60  GHGVLHLLSKNEETAGIPFIFLTAKAERSDVRKGMAMGADDYLTKPFDDQELMNAIETRL 119

Query: 119 QMQKSKDE 126
             Q    +
Sbjct: 120 NKQDLLKK 127


>gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 1349

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL D +  +R     L +D  + V   T   +A      +  P+ ++ D  M  +  F 
Sbjct: 622 VLLADDNADLRAYVTRLLDDT-YEVHAVTDGEQAVTAA-HDRTPDLVLSDVMMPNLDGFG 679

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R       V V  L      E  + G  AGA+ +L+KPF+   LR  +    ++ 
Sbjct: 680 VLRALRADERTHAVPVILLSARAGEEARLDGLEAGADDYLVKPFSARELRSRVHTHLELA 739

Query: 122 KSK 124
           + +
Sbjct: 740 RLR 742


>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    +R++      + GF + +A    EA    E E   +  V+D  M    
Sbjct: 1   MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKME-EFRIDLAVVDIMMPFKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +++     D+ V  +    +    + G   G + +++KPF+ + +   ++ L 
Sbjct: 60  GWELTKEIKE---YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALL 116

Query: 119 QMQKSKDEN 127
           +  + +  N
Sbjct: 117 RRYRVEANN 125


>gi|218129748|ref|ZP_03458552.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697]
 gi|217987858|gb|EEC54183.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697]
          Length = 1362

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 1    MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
            M       +L+V+    ++   +   +D  + V   ++  EA +   ++  P+  + D  
Sbjct: 1104 MKSKTRLRVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDT-PDLAISDVM 1161

Query: 56   MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            M  +        ++Q      V V  L  +   E  + G   GA+++++KPFN E L+  
Sbjct: 1162 MPEMDGLTLCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKT 1221

Query: 114  MRELPQMQKSKD 125
            +  L   ++   
Sbjct: 1222 IANLINNRRLLR 1233


>gi|215487439|ref|YP_002329870.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215265511|emb|CAS09913.1| fused response regulator of ato operon, in two-component system
           with AtoS [Escherichia coli O127:H6 str. E2348/69]
          Length = 461

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 247

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD   +VR++        GF V        A +   ++  P  +V+D  M  +  
Sbjct: 3   QSILVVDDDPVVRELVSQYLEGRGFKVATLEHGM-ALQRKLQDERPALVVLDIMMPELDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + +
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 122 KS 123
            S
Sbjct: 122 GS 123


>gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
 gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
          Length = 234

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L V+    VR +         +    A +  +A      +  P+ +++D  +  
Sbjct: 1   MNKPLILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQK-PDIMLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R + 
Sbjct: 60  MDGV-EVIKKIRSWSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVIL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|119386151|ref|YP_917206.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376746|gb|ABL71510.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 239

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R + R      GF V  A    E       +  P+ +V+D  +    
Sbjct: 1   MNHILIVDDDPEIRNLLRRYLEGQGFRVSTAADRRECEARV-TDGAPDLIVLDVMLPDGS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        ++ +  L    +    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 60  GLDICRSLHEHRPELRIILLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRR 119

Query: 121 QKSKDENQFLDA 132
              +DE    +A
Sbjct: 120 TGGQDEPAAAEA 131


>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + ++        G  V       +  E          +V+D  + G+ 
Sbjct: 1   MHRILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEH-ALVVLDVMLPGIS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R++  G+ V V  L    D    I G   GA+ +L KPFN   L   +R + + 
Sbjct: 60  GF-EVLRRIRAGSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRR 118

Query: 121 QKSKDENQ 128
            +   E +
Sbjct: 119 AQPSVERE 126


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+++    +R+V        G  V EA S  E       E   + +++D  + G   
Sbjct: 9   RSVLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARL-AERPYDIVLLDLVLPGRSG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R++   +   V  +    D   +IAG  AGA+ ++ KPF  E L   +R L +
Sbjct: 68  LEVCREIRRV---STTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALAR 124

Query: 120 M 120
            
Sbjct: 125 R 125


>gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 238

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+   I+R   +  F    + V  A    EA         P+ +++D  +      
Sbjct: 5   RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAK-TDSFQPHLILLDVMLPKKSGF 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     +  +  L  + +    +AG   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  EVCRIIRK--KHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121

Query: 121 QKSKDE 126
              + +
Sbjct: 122 IDLQTQ 127


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    E E+  +  ++D  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIE-EVKVDMAILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + I G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DLCYELRK---YYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|255035362|ref|YP_003085983.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948118|gb|ACT92818.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1378

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +LLV+ +   R+  + +F    + + EA +     E    E +P+ +V D  M  +    
Sbjct: 1128 VLLVEDNDEFREYLKEVFQK-DYRIIEAANGKIGLEMAL-EHVPDLIVSDVMMPEMDGTE 1185

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QM 120
                ++     + + V  L    + E+ + G + GA++++ KPF  + L+  +  L  Q 
Sbjct: 1186 LCRTIKTDRRISHIPVVLLTARAEEEQQLQGYQTGADAYVTKPFRLDILQVRIANLISQR 1245

Query: 121  QKSKDENQFLDAI 133
            ++ + + Q   AI
Sbjct: 1246 EQLQKQFQQHIAI 1258


>gi|16330036|ref|NP_440764.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652523|dbj|BAA17444.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++LLVD  + + +         G  +  A                + L++D  +    
Sbjct: 1   MANILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQY-DLLILDWMLPQVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R +  G    V +L  +   +  +AG  AG + +L+KPF    L   +R L 
Sbjct: 60  GLEICRQIRIL--GHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALL 117

Query: 119 QMQ 121
           + Q
Sbjct: 118 RRQ 120


>gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 231

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+VD    +  +      +  F+V++     EA  F EKE L +  ++D  M   
Sbjct: 1   MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEEL-DLALLDIMMPKI 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    +R+        +  L  +      I G   GA+ ++ KPF    +   ++  
Sbjct: 60  SGLELCKKIRERYNY---PIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQ 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LRRYK 121


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R +   + N+     F A S  EA +   +E   + +++D  M    
Sbjct: 1   MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVREN-IDLVLLDVMMPHED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R M   ++V + +L      E  + G   G + +++KPF  + L   +  + 
Sbjct: 60  GFVVCQSIRAM---SNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRSGA 121


>gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 226

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+    +R+         G+ V  A       +        + +V+D ++  + 
Sbjct: 1   MK-LLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNY-DLVVLDINLPYLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R   +  ++ V  L    D + ++ G   GAN +L+KPF+   L   +R L + 
Sbjct: 59  GFTLLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRR 118

Query: 121 QKSKDEN 127
           ++ +++ 
Sbjct: 119 RQVQEDL 125


>gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
 gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+         G++VF+A    E  E  EKE   +  ++D  M  + 
Sbjct: 3   MNHVLIVEDDKEIREGVEIYLKSQGYVVFQAADGVEGLEVIEKEE-IHLAIVDVMMPRMD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+      D  V +L  + +    I G   GA+ ++ KPF    L   +    + 
Sbjct: 62  GIQMTVKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRR 120

Query: 121 QK 122
            +
Sbjct: 121 YR 122


>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|21229109|ref|NP_635031.1| putative transcriptional regulator [Methanosarcina mazei Go1]
 gi|20907666|gb|AAM32703.1| putative transcriptional regulator [Methanosarcina mazei Go1]
          Length = 292

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD      ++         + VF A    EA    +KE  P+ +++D  M      
Sbjct: 16  KVLIVDDMRENVELMEAYLAVEPYKVFCAYGGKEALRIVDKEK-PDIVLLDVMMPEVNGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++ P    + V  L    + E  I G   GA+ FL KP NR  L+  ++ L ++
Sbjct: 75  EVCKILKENPETQFIPVLMLTALSELEDRIKGIEVGADDFLTKPINRLELKTRVKSLLRV 134

Query: 121 QKSKDEN 127
           +   D  
Sbjct: 135 KYLHDRL 141


>gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 262

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+    +R+       + G+ V+      +A    ++      +   + +++D  +
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                L+    +R    G +  +  +  +    + + G   GA+ ++ KPF+ + L    
Sbjct: 92  PQVNGLDVCRSLR--FGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149

Query: 115 RELPQMQKSKDEN 127
           R + + Q     N
Sbjct: 150 RAMIRRQGLAGNN 162


>gi|119715983|ref|YP_922948.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536644|gb|ABL81261.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 123

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ D    +R++     +  G  V   +    A E C+ +  P+  V+D  M G  
Sbjct: 1   MARILVADDDVDIRELVEFKLSTLGHDVVAVSDGAAAIEACQAQ-RPDLAVLDVMMPGVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+ I  +R  P   D+ V  L        +  G  +GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLDAIRAIRADPALADLPVILLTARAQESDVETGFDSGADDYITKPFSPRELASRVQALL 119

Query: 119 QM 120
             
Sbjct: 120 TR 121


>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 230

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  +        G  V              +    + LV+D  + G  
Sbjct: 1   MARILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGH-DLLVLDVMLPGVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R+ P      V  L    +    + G   GA+ +L KPF+   L   +R L 
Sbjct: 60  GFEIVERLRRRPGYPR--VLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|256821452|ref|YP_003145415.1| response regulator receiver protein [Kangiella koreensis DSM 16069]
 gi|256794991|gb|ACV25647.1| response regulator receiver protein [Kangiella koreensis DSM 16069]
          Length = 121

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD S     +   +    G  V  A          +    P+ +++D  M G+ 
Sbjct: 1   MARVLIVDDSPTEAHILTGMLEKNGHQVITAPDGESGIVSAKANH-PDVILMDVVMPGLN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++ P  + + +  +  +      + G R GAN ++ KP +  +L  ++  + 
Sbjct: 60  GFQATRQLKKDPATSSIPIIIVSTKSQATDRVWGMRQGANDYITKPVDEASLLESVNNVL 119


>gi|291087886|ref|ZP_06572149.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291073605|gb|EFE10969.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 251

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +R+         G+ VF+A    E     EKE   +  ++D  M  +    
Sbjct: 16  ILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVIEKEE-IHLAIVDIMMPRMDGIT 74

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++      D  V +L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 75  MVIKLREQY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYR 132


>gi|170767484|ref|ZP_02901937.1| sigma-54 dependent response regulator AtoC [Escherichia albertii
           TW07627]
 gi|170123818|gb|EDS92749.1| sigma-54 dependent response regulator AtoC [Escherichia albertii
           TW07627]
          Length = 461

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGHTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T + V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRIPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis
           638R]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSY--HLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
             + D  +  + +
Sbjct: 123 TATSDTEKAPEQL 135


>gi|186682679|ref|YP_001865875.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
 gi|186465131|gb|ACC80932.1| response regulator receiver modulated diguanylate cyclase [Nostoc
           punctiforme PCC 73102]
          Length = 322

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 10/139 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R + RH     G+ + EA +  EA      +L P+ +++D  M  +  F 
Sbjct: 12  VLIVDDEPFIRMILRHFLEREGYKIAEAQNGREALTAF-NQLHPDIILLDAIMPDMDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H+  +       V  +    D E +      GA  ++ KP +   LR  ++ L +  
Sbjct: 71  CCTHLELLDCSKHTPVLMITGLEDQESVDRAFAVGAMDYITKPIHWPVLRQRVKRLIEQS 130

Query: 122 KSKD-------ENQFLDAI 133
           + +        E Q L  I
Sbjct: 131 QLQQKLEAVNLELQRLATI 149


>gi|284054182|ref|ZP_06384392.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 488

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+VD +     +   + +  G+ V EA     A +      LP+ +++D  M  +     
Sbjct: 2   LIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEV-NNKLPDLILLDIMMPDIDGYAV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++  P   +V + +L    D    +     G   ++ KPF  + +   ++    +++
Sbjct: 61  CNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQLTLRR 120

Query: 123 SKDENQFLD 131
           ++ + Q L+
Sbjct: 121 TQQQLQVLN 129


>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF V  A    +A E   +E  P+ +V+D  M     F
Sbjct: 8   KVLVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARE-RPDIIVLDVMMPAPDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    + +L  +      IAG  AG + ++ KPF+ E +   +R + +  +
Sbjct: 67  TVARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMR 126

Query: 123 SKDEN 127
              E 
Sbjct: 127 PAQEQ 131


>gi|260172793|ref|ZP_05759205.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|315921079|ref|ZP_07917319.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694954|gb|EFS31789.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1330

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+V+ +   R    +      + VF+A +  EA E          ++ D  M  +  
Sbjct: 1081 TSLLIVEDNDDFRNFLINCLKGT-YQVFDAPNGKEALEIL-AHQSIQIVISDVMMPEMDG 1138

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++     + + V  L      E  ++G + GA+ ++ KPFN E L   ++++ +
Sbjct: 1139 MELCRKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKILK 1198

Query: 120  MQKSKDE 126
              K+  E
Sbjct: 1199 WTKNNHE 1205


>gi|258625182|ref|ZP_05720098.1| response regulator rpfG [Vibrio mimicus VM603]
 gi|258582557|gb|EEW07390.1| response regulator rpfG [Vibrio mimicus VM603]
          Length = 377

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L     + +  AT   +A   C K+  P+ +++D  M  +   
Sbjct: 7   TILIVDDNPENRALLAGLLKPH-YRLLVATGGAQALTICHKQK-PDLVLLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   D+ V +L  +   E    G   GA  ++ KP +   L    R   ++
Sbjct: 65  EVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLRL 124

Query: 121 QKS----KDENQFLD 131
           +++     ++N+ L+
Sbjct: 125 RQAMKLLAEQNETLE 139


>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
 gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
          Length = 229

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+LL +    + +         G+ V  +    +A E      + + +V+D  +  + 
Sbjct: 1   MTSVLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGV-DLIVLDLGLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 251

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+ +  +R++   +  D G+    A    EA +  +++   + +V D  M  + 
Sbjct: 27  MFNILVVEDNADMRELFCTVLADHGYNSIPAADGAEALDIMDRQ-YIDLIVADIMMPNMD 85

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + V  +  +  F  +  G R GA+ +++KP N   L   +  L 
Sbjct: 86  GYQLTKALR--DANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALL 143

Query: 119 QMQKSKDENQ 128
           +  +   E +
Sbjct: 144 RRARISSEKK 153


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  136 bits (345), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V +       +      +  EA +  +++   +++++D  + G+  
Sbjct: 6   KRVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQS-FDFVILDLMLPGLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV +  L  +V+    I G   GA+ ++ KPF+ + L   +R + +
Sbjct: 65  EEICNRIRLQ---SDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMR 121

Query: 120 MQKSK 124
              ++
Sbjct: 122 RTSNE 126


>gi|325263737|ref|ZP_08130470.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
 gi|324030775|gb|EGB92057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Clostridium sp. D5]
          Length = 298

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+     + +   +   +G+ V  A    EA    EKE  P+  ++D  +    
Sbjct: 1   MSKILVVEDDVASQILMTDILEKYGYNVVVAMDGLEAISLAEKEK-PDLAIVDIMLPTLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R +P   ++ V  L    + +  I    AGA  FL KPF R  L   ++ + 
Sbjct: 60  GYQVCERLRCLPQCKELPVIILTALNEDQHRIRALEAGAIDFLSKPFKRVELLTKIKAVL 119

Query: 119 QMQK 122
            MQ+
Sbjct: 120 LMQE 123


>gi|254883001|ref|ZP_05255711.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319641845|ref|ZP_07996522.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_40A]
 gi|254835794|gb|EET16103.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317386518|gb|EFV67420.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_40A]
          Length = 1319

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD +  +    R L     + +  A++  EA +    EL+P+ ++ D  M  +    
Sbjct: 1070 ILVVDDNQDLLNYLRMLLAPR-YQITCASNGKEALDLL-SELMPDLVISDVMMPVMDGME 1127

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++Q    + + V  L  +V+    + G   GA+ ++ KPF+ + ++  +  L   +
Sbjct: 1128 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLLSNR 1187

Query: 122  KSKD 125
            +   
Sbjct: 1188 ERMK 1191


>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 226

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +LLLVD    +  +        G+   +  S  EA ++  +    + +++D  M  + 
Sbjct: 1   MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHA-DLVLLDVMMPELD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +    +   ++ G + GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|220917497|ref|YP_002492801.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955351|gb|ACL65735.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 434

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LL+ D     R+V   +     + V  A+   EA +    E  P+ +++D  M      E
Sbjct: 132 LLVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEH-PDLVLLDIGMPRLDGFE 189

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +RQ P   D+ V ++    D    +     GA  +L KPF+   LR  +    ++ 
Sbjct: 190 VLQRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRLV 249

Query: 122 KSKDENQFLD 131
           +S+   + L 
Sbjct: 250 RSQIALRELA 259


>gi|159026609|emb|CAO86541.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 368

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD      ++   +  + G+ V +A +   A     + L+P+ +++D +M  +   
Sbjct: 9   SVLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTV-RSLIPDLILLDINMPDLNGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V ++    D    +   + G   ++ KPF  E +   +     +
Sbjct: 68  QVCEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQLTI 127

Query: 121 QKSKDENQ 128
            + K + Q
Sbjct: 128 SRQKKQLQ 135


>gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 241

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA    EA E        + +++D  + G   +
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDY-DVILLDLMLPGKDGI 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           E    +R         +  L  + +    + G   G + +++KPF+   +   ++
Sbjct: 68  EVCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119


>gi|116621041|ref|YP_823197.1| two component sigma54-specific Fis family transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224203|gb|ABJ82912.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Candidatus Solibacter usitatus Ellin6076]
          Length = 450

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +R+V        GF V +A S  E  +  ++    + ++ D  +  +  
Sbjct: 3   KRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA---DMVLTDLKLPNMDG 59

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F++ +R+    + V V  +    + E  +   +AGA  FLLKPF+ + L   + +  +
Sbjct: 60  QEFLSLIRRQ--NSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALE 117

Query: 120 MQKSKDENQFLDA 132
           ++  ++EN+ L A
Sbjct: 118 VRALREENRELKA 130


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        G+ V  A     A +       P+ LV+D  M G+  F
Sbjct: 9   KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRT-FKPDILVLDVMMPGMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G D    +L      E  + G   G + ++ KPF+ E +   +  L + 
Sbjct: 68  GLLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRR 125


>gi|323952014|gb|EGB47888.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
          Length = 165

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     ++  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RDAKPDLVLLDLMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|331647875|ref|ZP_08348967.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli M605]
 gi|281179312|dbj|BAI55642.1| two-component response regulator [Escherichia coli SE15]
 gi|330912051|gb|EGH40561.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           AA86]
 gi|331043599|gb|EGI15737.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli M605]
          Length = 461

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|260752397|ref|YP_003225290.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551760|gb|ACV74706.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 241

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++++V+    +R +   +  + G++     S  E  E  +   + + +++D  + G   
Sbjct: 4   QTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTV-DLILMDVMLPGKNG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R       + V +L    D    + G   G + ++ KPF ++ L   +R + +
Sbjct: 63  LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122

Query: 120 MQKSKDE 126
             ++  E
Sbjct: 123 RSQAVKE 129


>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 232

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 8/124 (6%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+ +  L+ D    V  +        G+ V +     EA      +   + +++D  M  
Sbjct: 1   MNRISILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQP-IDLVILDIMMPK 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R       + + +L  +      + G   GA+ ++ KPF    L   +  
Sbjct: 60  MDGYEVTRQIRAQ---YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|188584894|ref|YP_001916439.1| response regulator receiver protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349581|gb|ACB83851.1| response regulator receiver protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 239

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R   ++  +  G+ +  A +  EA E    +   + +++D  + G+  
Sbjct: 3   KKLLIVDDEKNIRMTLKNCLSYEGYELEIALNGEEALEKLRTQDY-DLVLLDLKLPGLNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +    G DV V  +      E+ +   + GA  F+ KPF+   +R  + ++    
Sbjct: 62  LQVLEKVRDEGRDVKVIMMTAYGTVERAVNAMKLGAIDFINKPFSPNQIRALVNDVLSRP 121

Query: 122 KSKDEN 127
              +EN
Sbjct: 122 NLSEEN 127


>gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 896

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D +  +R   R   +   + V EA       E   + ++P+ +V D  M  +    
Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARR-IMPDLVVSDIMMPVMDGLE 712

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++Q P  + + V  L      E+   G   GA++++ KPF+   L   +  L Q +
Sbjct: 713 FCRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLIQSR 772

Query: 122 KSKDEN 127
           K   + 
Sbjct: 773 KKLGQL 778


>gi|323977582|gb|EGB72668.1| sigma-54 interaction domain-containing protein [Escherichia coli
           TW10509]
          Length = 461

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   +  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPIILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 228

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            + + +N+
Sbjct: 119 SQKQVKNE 126


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   +E  P+ +V+D  +  +   
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTA-REFRPDAVVLDMMLPDMDGL 102

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 103 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162

Query: 123 SKDENQFLDAI 133
           + D  +  D++
Sbjct: 163 AAD--RRSDSV 171


>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
 gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
          Length = 221

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +E   + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMF-REGNFDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 225

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    ++  + +++D  M  +  F
Sbjct: 4   NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|332703870|ref|ZP_08423958.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio africanus str. Walvis Bay]
 gi|332554019|gb|EGJ51063.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio africanus str. Walvis Bay]
          Length = 459

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R   R +  D G  V EA S  +  E  E +  P+ + +D  + G+   
Sbjct: 4   RILIIDDEESIRFSLRGVLEDEGHEVIEAGSGEQGLEMVENQG-PDLVFLDIWLPGMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      DV V  +    + E  ++  + GA  F+ KP + E +   + +  +  K
Sbjct: 63  HVLEKVREGQVDVPVIMISGHGNVETAVSAIKKGAFDFIEKPLSLEKVVITVNKALEFGK 122

Query: 123 SKDENQFLDA 132
              EN  L A
Sbjct: 123 LLRENLELRA 132


>gi|264676241|ref|YP_003276147.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533423|ref|ZP_07046805.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206753|gb|ACY30851.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718629|gb|EFI59604.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 243

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-----LPNYLVIDESMEG 58
           LL+++    + ++      + G  V          E  +        LP+ +++D  +  
Sbjct: 6   LLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLPD 65

Query: 59  VLEF--IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           +        +R MP     V V  L  + D    I G   GA+ +L KPF    L   +R
Sbjct: 66  MDGLEVCRRIRSMPGTPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARIR 125

Query: 116 ELPQMQKSKDE 126
            + + + S+ +
Sbjct: 126 AILRRKGSESQ 136


>gi|284035960|ref|YP_003385890.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirosoma linguale DSM 74]
 gi|283815253|gb|ADB37091.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirosoma linguale DSM 74]
          Length = 365

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M + +LLV+    +R+    L    GF V  A +  E       +  P+ ++ D  M   
Sbjct: 1   MTTQILLVEDEAQIRENVAELLTLHGFQVETAVNGREGISQALLQ-QPDLILCDIMMPEV 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              + +  VR      ++   +L  + +   +  G   GA+ +L KPF  ++L  A+   
Sbjct: 60  DGYQVLDVVRNNRSTANIPFIFLTAKTEPADLRRGMVMGADDYLTKPFTFQSLLSAIESR 119

Query: 118 PQMQKSKDEN 127
            Q +  +  +
Sbjct: 120 LQREAMRKAD 129


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 3/118 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLV+ + + ++V R +    G  V  A +  +A E  E E   + +++D  M  +   
Sbjct: 1333 KILLVEDNELNQQVARRMLEGMGLDVDVADNGRKALEALESEPY-SLVIMDIQMPEMDGL 1391

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R      ++ +  +              AG N  L KP + E L+ A+ +  
Sbjct: 1392 TASRIIRSDERYRNLPILAMTAHAMPGDREKSFEAGMNEHLTKPIDPEELKRALVKYL 1449



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN---YLVIDESME 57
            M S L+++ + + R+  R      G  V   ++   A E   + +  +    +++   ++
Sbjct: 1184 MKS-LVIEGNMMAREFIRSTMEKSGITVMVDSTASSALERLAESIDVDGLGLILVSGKIQ 1242

Query: 58   GV--LEFIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAM 114
             +  LE +  +R MP    V +  +      E      A  G + F+ +P +R +L  A+
Sbjct: 1243 DMHVLEVVERIRNMPKLMHVPIILMSPVNMDESFRKEAALVGVDGFVTRPVSRLSLYAAL 1302

Query: 115  R 115
            +
Sbjct: 1303 Q 1303


>gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
          Length = 245

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        GF    A +  E +    K+ + + +++D  M G     
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAV-DLVILDIMMPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              RQM   + + +  L    +    I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 66  LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123


>gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 228

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    + ++ +       F V  A       +   ++   + +V+D  M  + 
Sbjct: 1   MQTVLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQP-FDIVVLDVMMPRLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++ +   ++V V  L  + D    I G   GA+ ++ KP +   L   +R + + 
Sbjct: 60  G-IETLKAIRQHSNVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILRR 118

Query: 121 QKSKD 125
            +  +
Sbjct: 119 VQPLE 123


>gi|291569797|dbj|BAI92069.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 372

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L VD S     +   +  D G+ V+       A +    E  P  +++D  M G    E
Sbjct: 15  ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTIL-EKPPQLVLLDVMMPGIDGYE 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +        ++ G  AGA+ F+ KP   + L   +R L +++
Sbjct: 74  VTRRIRNNPNLPFIPILLITAHDQ-SSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLK 132

Query: 122 KSKDEN 127
           +S DE 
Sbjct: 133 ESIDEQ 138


>gi|241763478|ref|ZP_04761531.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
 gi|241367319|gb|EER61650.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
          Length = 376

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD +     +   L  +  F V  A    +A         P+ +++D  M      
Sbjct: 20  TVLVVDDTPENLTLMGSLLREH-FQVKVANQGDKALRIALSGTPPDLILLDIMMPEVDGY 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ V +L    + +   AG   GA  ++ KP +   L   +     +
Sbjct: 79  EVCRRLKAHPSTRDIPVIFLTARSEPDDEQAGLALGAVDYITKPISPPILLARVNTHLTL 138

Query: 121 QKSKD 125
           + + D
Sbjct: 139 KATAD 143


>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 58/124 (46%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ + EAT   EA    E+  + + +++D  +  +
Sbjct: 1   MQRKILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWSVCRRIRK---TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +  + GF         +A E   +   P+ +++D  + G+
Sbjct: 35  MKARILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFE-VSQANKPDLVLLDLMLPGM 93

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R     +DV +  L  + D   ++ G  +GA+ ++ KPF    L   +R  
Sbjct: 94  DGIEICRLIRAE---SDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRAR 150

Query: 118 PQ 119
            +
Sbjct: 151 LR 152


>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRR-WNFDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
 gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  +  A S  EA EF + E   + LV+D  MEG+  
Sbjct: 5   SILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETA-DLLVLDVMMEGMSG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     TD  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 64  FEACTEIRN---YTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLK 120

Query: 120 MQKSKDE 126
               ++E
Sbjct: 121 RTYKREE 127


>gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator
            [Parabacteroides distasonis ATCC 8503]
 gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 1369

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL+VD +   R+  +   +   + V  A    +A +   +E LP+ ++ D  M     +
Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEE-LPDMVISDVMMPITDGI 1179

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + V V  L  +   +  + G  AGA+ ++ KPFN E L   +R L +M
Sbjct: 1180 TLCRRIKGDIRTSHVPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEM 1239

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1240 KKKMQK 1245


>gi|83310938|ref|YP_421202.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945779|dbj|BAE50643.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Magnetospirillum magneticum AMB-1]
          Length = 369

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD S     +   L     + V  A S     +       P+ +++D  M      
Sbjct: 11  TILVVDDSPDDVWLMSELL-KADYRVKVANSGERGLKIAMGNERPDLVLLDVMMPDIDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      D+ V +L  +    +   G   GA  ++ KPF+   +   ++   ++
Sbjct: 70  EVCRQLKTDSRTHDIPVIFLTSKTRMAEEKRGLDMGAVDYITKPFSPSIVLARVKAHLRL 129

Query: 121 QK----SKDENQFLD 131
           +      +D+N+FL+
Sbjct: 130 KSSADFLRDQNRFLE 144


>gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 229

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++V+    +  + R+     G+ V   T   EA E   +E +P+ LV+D  +     +
Sbjct: 5   KIMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEA-EVRLQENVPDLLVLDWMVPAISGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + +  L    +    + G   GA+ +L+KPF+       +R L + 
Sbjct: 64  ELCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRR 123

Query: 121 QKSK 124
            K +
Sbjct: 124 AKPE 127


>gi|332344002|gb|AEE57336.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           UMNK88]
          Length = 461

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTQQTI 127


>gi|294138950|ref|YP_003554928.1| chemotaxis protein CheY [Shewanella violacea DSS12]
 gi|293325419|dbj|BAJ00150.1| chemotaxis protein CheY [Shewanella violacea DSS12]
          Length = 120

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA +  EA +  ++    + ++ D +M  + 
Sbjct: 1   MKKILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKVAQQGEY-DLVISDVNMPIMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R +P      +  L  E   EK   G  AGA  +++KPFN + L   +R++ 
Sbjct: 60  GLTLIRNLRTLPNYKFTPLLMLTTESGTEKKQEGRSAGATGWIVKPFNPDQLLATVRKVL 119


>gi|238650401|ref|YP_002916253.1| response regulator PleD [Rickettsia peacockii str. Rustic]
 gi|238624499|gb|ACR47205.1| response regulator PleD [Rickettsia peacockii str. Rustic]
          Length = 450

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ V +A    EA +  +KE   + +++D  M  +  
Sbjct: 3   NTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMILDIMMPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+     ++ +  L  + +    I G   GA+ +L KPFN   L   ++ L +
Sbjct: 62  IEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|224025799|ref|ZP_03644165.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM
           18228]
 gi|224019035|gb|EEF77033.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM
           18228]
          Length = 903

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  +R   R +  D  + V EA +  E  +   K  +P+ ++ D  M  +   
Sbjct: 655 TILVIDDNLDIRDYVRSVLQDE-YNVIEAANGQEGLQQAMK-YVPDAIICDVMMPVMDGM 712

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + V  L      E+ I G   GA+S++ KPF+   L   +R L + 
Sbjct: 713 ECCRRLKSEVQTSHIPVMMLTAYAVDEQKIKGYECGADSYISKPFSARLLTVRLRNLIEN 772

Query: 121 QKSKD 125
           ++   
Sbjct: 773 RRRLQ 777


>gi|217978047|ref|YP_002362194.1| adenylate/guanylate cyclase [Methylocella silvestris BL2]
 gi|217503423|gb|ACK50832.1| adenylate/guanylate cyclase [Methylocella silvestris BL2]
          Length = 403

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L VD      ++        G+ +  A+   E        + P+ +++D  M  +   
Sbjct: 22  RILAVDDVAENLEIVVVRLEAHGYEIITASDGEEGLAKARA-IKPDLILLDIMMPKLDGI 80

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +++      + V  L  + D   ++AG  AGA+ +L KPF++  L   +R + ++
Sbjct: 81  SVLKELKRDENLGFIPVILLTAKADRTDLVAGLDAGADDYLTKPFDQSALVARVRSMLRI 140

Query: 121 QKSKDENQ 128
           +   D  Q
Sbjct: 141 KALHDLVQ 148


>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 232

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++    +  +         + V   +   E           + +++D  +  +  
Sbjct: 3   KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGL-HLGTTQTFDLIILDIMLPSMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                H+R   +     +  L  +      + G   GA+ +L KPF+   L+  ++   +
Sbjct: 62  LQVCQHLRAKNIF--TPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLR 119

Query: 120 MQKSKDEN 127
                 + 
Sbjct: 120 RTDMSQKE 127


>gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus
           kaustophilus HTA426]
 gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus
           kaustophilus HTA426]
          Length = 232

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    +       + V    S  EA +        + +V+D  MEG+  
Sbjct: 4   KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMI--NDDFDLIVLDIMMEGIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         + ++  +   E  +     G + ++ KPF+ + L+  +    +
Sbjct: 62  MELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLR 118

Query: 120 MQKSKDENQF 129
            ++    N+ 
Sbjct: 119 REERIRSNER 128


>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++ +      GF V        A     +E  P+ +++D  +  +  
Sbjct: 3   KKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEEN-PDLIILDLMLPEISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    +    + G   GA+ ++ KPF  + L   ++   +
Sbjct: 62  WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSE 121


>gi|317968176|ref|ZP_07969566.1| two-component response regulator [Synechococcus sp. CB0205]
          Length = 246

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD     R++      D G+ V   +S  +     E +  P+ +V+D  + G   
Sbjct: 10  QRIWVVDDDAEQRRLVGTYLTDQGYDVRCLSSGEQLMVRLESQ-RPDLVVLDVMLPGEDG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G D+ V  L  + D    I G   GA+ +L KPF    L   +  + + +
Sbjct: 69  LTLLRRLRDGGDDLPVVMLTAKGDGIDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRR 128


>gi|319778506|ref|YP_004129419.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis
           MCE9]
 gi|317108530|gb|ADU91276.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis
           MCE9]
          Length = 235

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +++VD    +R++     N  G+     +   +  +   +   P+ +V+D  +     
Sbjct: 6   TKVMIVDDDPDLRQLLAQYLNRHGYDTLLVSDGNDLADRIIR-FSPDLIVLDRMLPSGDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F  ++R      D+ +  L    +    + G  +GA+ ++ KPF+   L   +  + +
Sbjct: 65  VDFCRNLR--DQHEDIPIILLTARDETADRVLGLESGADDYIGKPFDPRELLARIETVLR 122

Query: 120 MQK 122
            +K
Sbjct: 123 RKK 125


>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
 gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++        GF   EA    EA          + +V+D  M  + 
Sbjct: 1   MPTILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAP-IDLVVLDIMMPTMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+M   TD+ +  L    +  + + G   G + +L KPF+   L   ++ L 
Sbjct: 60  GWTLCKELRKM--NTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
 gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V    +     E    E   +  ++D  + G  
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEE-FDLFILDLMLPGTD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R++    +  +  +  + +    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICKKIREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
          Length = 223

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDEN--QFLDA 132
             +E   Q L+A
Sbjct: 118 EPEEVAPQALEA 129


>gi|329922247|ref|ZP_08277949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942284|gb|EGG38554.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 1049

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            LL+VD   +  KV  HL  D G+ +   T   EA +  E+    + ++ D  M  +   
Sbjct: 720 RLLIVDDDPVNLKVIHHLLADEGYRIVAVTRAEEALQLLEQGEW-DLIISDVMMPQMSGY 778

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ  + +++ +  L      E +  G  +GAN +L+KP +   L+  +R L ++
Sbjct: 779 ELSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPVDHLELKTRVRALLEL 838

Query: 121 QKSKDENQFLDA 132
           + S  E   ++A
Sbjct: 839 KHSIKERLHMEA 850


>gi|323967662|gb|EGB63074.1| sigma-54 interaction domain-containing protein [Escherichia coli
           M863]
 gi|327252489|gb|EGE64148.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           STEC_7v]
          Length = 461

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|294643338|ref|ZP_06721159.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|292641309|gb|EFF59506.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
          Length = 1117

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
           LLV+ +  +R+  R +F    + V EA    E      K  LP+ ++ D  M     +E 
Sbjct: 831 LLVEDNQELREFLRSIFTPM-YRVVEAADGREGANKALK-YLPDIIISDVMMPEKDGIEM 888

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
              +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +  L  Q +
Sbjct: 889 TRELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSAIYLQARVENLLMQRK 948

Query: 122 KSKD 125
           K + 
Sbjct: 949 KLQS 952


>gi|323528571|ref|YP_004230723.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385573|gb|ADX57663.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  +      ++  P+ +V+D  M G     
Sbjct: 7   VLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|261880781|ref|ZP_06007208.1| two component system sensor histidine kinase/response regulator
            [Prevotella bergensis DSM 17361]
 gi|270332558|gb|EFA43344.1| two component system sensor histidine kinase/response regulator
            [Prevotella bergensis DSM 17361]
          Length = 1324

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +  +    R LF      V  A    E  +   KE LP+ +V D  M  +   
Sbjct: 1076 TILLVEDNEDLLMSLRKLFAKT-CRVLLARDGREGLDLVRKE-LPDLVVSDVMMPRMSGT 1133

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                H++     + + V  L      E  IAG + GA+ ++ KPF+ + L      L + 
Sbjct: 1134 EMCKHIKDDLAVSHIPVVLLTAMGSVENTIAGLKCGADDYIPKPFDSKLLVIRCNNLIRS 1193

Query: 120  ----MQKSKDENQF 129
                 +K ++E++ 
Sbjct: 1194 RNLLRKKIREEDRM 1207


>gi|209523776|ref|ZP_03272329.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|209495808|gb|EDZ96110.1| response regulator receiver protein [Arthrospira maxima CS-328]
          Length = 141

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD +    +V      D  + V  A +   A         P+ +++D  M  +   
Sbjct: 10  SILIVDDTPDNLRVLSATLGDRDYDVQCAINGKLAL-MAVANQPPDLVLLDIKMPEMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V +L    D    +     G   ++ KPF  E +   +     +
Sbjct: 69  QVCEALKSQQKTAEIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTI 128

Query: 121 QKSKDENQ 128
           ++ + + Q
Sbjct: 129 RRLQKQLQ 136


>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
 gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
          Length = 236

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +    G+ V +  S  EA    E+E LP+ +++D  + G+  
Sbjct: 8   QKILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERE-LPDCVLLDLMLPGMTG 66

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +RQ     ++ V  L  +V  +  +   R GA+ ++ KPF+ E +   +    +
Sbjct: 67  EAVLDQIRQKQK-KEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMR 125

Query: 120 MQKSKDEN 127
               + +N
Sbjct: 126 RYTKEAQN 133


>gi|197118049|ref|YP_002138476.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087409|gb|ACH38680.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 396

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +   +  + G+ VF A S  E  E  EKE  P  +++D  M  +   
Sbjct: 11  RVLIVDDEKVILDLTAIILKNRGYQVFTALSALEGLEVIEKE-RPELVLLDYMMPNMDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A         D +V     +   E  +   +AGA+ ++LKPFN + L   +  + +++ 
Sbjct: 70  TALKEIRRSYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLRG 129

Query: 123 SKDENQFL 130
            + +N+ L
Sbjct: 130 IELQNRAL 137


>gi|16130157|ref|NP_416724.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89109039|ref|AP_002819.1| fused response regulator of ato opeon, in two-component system with
           AtoS [Escherichia coli str. K-12 substr. W3110]
 gi|157161704|ref|YP_001459022.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           HS]
 gi|170081840|ref|YP_001731160.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator and sigma 54 interaction
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188494177|ref|ZP_03001447.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638]
 gi|238901395|ref|YP_002927191.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli BW2952]
 gi|253772856|ref|YP_003035687.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162232|ref|YP_003045340.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B
           str. REL606]
 gi|256022097|ref|ZP_05435962.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp.
           4_1_40B]
 gi|300903602|ref|ZP_07121520.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300931434|ref|ZP_07146763.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300948915|ref|ZP_07162977.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300958905|ref|ZP_07171009.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301024238|ref|ZP_07187933.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301306547|ref|ZP_07212610.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301647689|ref|ZP_07247483.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307138879|ref|ZP_07498235.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           H736]
 gi|312973526|ref|ZP_07787698.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           1827-70]
 gi|331642850|ref|ZP_08343985.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli H736]
 gi|1168553|sp|Q06065|ATOC_ECOLI RecName: Full=Acetoacetate metabolism regulatory protein AtoC;
           AltName: Full=Ornithine decarboxylase antizyme; AltName:
           Full=Ornithine/arginine decarboxylase inhibitor
 gi|619917|gb|AAA60332.1| NtrC/NifA-like protein regulator [Escherichia coli]
 gi|1736875|dbj|BAA16016.1| fused response regulator of ato opeon, in two-component system with
           AtoS [Escherichia coli str. K12 substr. W3110]
 gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli str. K-12 substr. MG1655]
 gi|157067384|gb|ABV06639.1| sigma-54 dependent response regulator AtoC [Escherichia coli HS]
 gi|169889675|gb|ACB03382.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator and sigma 54 interaction
           protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188489376|gb|EDU64479.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638]
 gi|238861249|gb|ACR63247.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli BW2952]
 gi|242377856|emb|CAQ32623.1| AtoC transcriptional activator; Az protein inhibitor of ODC
           [Escherichia coli BL21(DE3)]
 gi|253323900|gb|ACT28502.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974133|gb|ACT39804.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli B str. REL606]
 gi|253978300|gb|ACT43970.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli BL21(DE3)]
 gi|260448686|gb|ACX39108.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Escherichia coli DH1]
 gi|299880501|gb|EFI88712.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300314468|gb|EFJ64252.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300404338|gb|EFJ87876.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300451611|gb|EFK15231.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300460804|gb|EFK24297.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300838207|gb|EFK65967.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301074219|gb|EFK89025.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309702531|emb|CBJ01858.1| acetoacetate metabolism regulator (two-component system response
           regulator) [Escherichia coli ETEC H10407]
 gi|310332121|gb|EFP99356.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           1827-70]
 gi|315136852|dbj|BAJ44011.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           DH1]
 gi|315255155|gb|EFU35123.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315615482|gb|EFU96114.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           3431]
 gi|320199815|gb|EFW74404.1| Acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           EC4100B]
 gi|323936835|gb|EGB33120.1| sigma-54 interaction domain-containing protein [Escherichia coli
           E1520]
 gi|323941085|gb|EGB37272.1| sigma-54 interaction domain-containing protein [Escherichia coli
           E482]
 gi|323961526|gb|EGB57134.1| sigma-54 interaction domain-containing protein [Escherichia coli
           H489]
 gi|323973079|gb|EGB68273.1| sigma-54 interaction domain-containing protein [Escherichia coli
           TA007]
 gi|331039648|gb|EGI11868.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli H736]
          Length = 461

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|26248609|ref|NP_754649.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           CFT073]
 gi|91211514|ref|YP_541500.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           UTI89]
 gi|110642430|ref|YP_670160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           536]
 gi|117624414|ref|YP_853327.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           APEC O1]
 gi|191170007|ref|ZP_03031561.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11]
 gi|218559138|ref|YP_002392051.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           S88]
 gi|218690383|ref|YP_002398595.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           ED1a]
 gi|227887278|ref|ZP_04005083.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           83972]
 gi|237704695|ref|ZP_04535176.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp.
           3_2_53FAA]
 gi|300936771|ref|ZP_07151664.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300981267|ref|ZP_07175444.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300983213|ref|ZP_07176490.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301022434|ref|ZP_07186316.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301048968|ref|ZP_07195957.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306814666|ref|ZP_07448828.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           NC101]
 gi|331658300|ref|ZP_08359262.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli TA206]
 gi|26109014|gb|AAN81217.1|AE016763_176 Acetoacetate metabolism Regulatory protein atoC [Escherichia coli
           CFT073]
 gi|91073088|gb|ABE07969.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           UTI89]
 gi|110344022|gb|ABG70259.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           536]
 gi|115513538|gb|ABJ01613.1| fused response regulator of ato operon, in two-component system
           with AtoS: response regulator/sigma54 interaction
           protein [Escherichia coli APEC O1]
 gi|190909523|gb|EDV69108.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11]
 gi|218365907|emb|CAR03649.1| fused response regulator of ato opeon, in two-component system with
           AtoS: response regulator ; sigma54 interaction protein
           [Escherichia coli S88]
 gi|218427947|emb|CAR08718.1| fused response regulator of ato opeon, in two-component system with
           AtoS: response regulator ; sigma54 interaction protein
           [Escherichia coli ED1a]
 gi|222033982|emb|CAP76723.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           LF82]
 gi|226901061|gb|EEH87320.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp.
           3_2_53FAA]
 gi|227835628|gb|EEJ46094.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           83972]
 gi|294494076|gb|ADE92832.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           IHE3034]
 gi|300299219|gb|EFJ55604.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300307631|gb|EFJ62151.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300397535|gb|EFJ81073.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300408614|gb|EFJ92152.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300458101|gb|EFK21594.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|305852060|gb|EFM52512.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           NC101]
 gi|307554287|gb|ADN47062.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           ABU 83972]
 gi|307626241|gb|ADN70545.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           UM146]
 gi|312946842|gb|ADR27669.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315285840|gb|EFU45280.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315292172|gb|EFU51524.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315298046|gb|EFU57315.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|323955988|gb|EGB51741.1| sigma-54 interaction domain-containing protein [Escherichia coli
           H263]
 gi|324006598|gb|EGB75817.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013105|gb|EGB82324.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|331056548|gb|EGI28557.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli TA206]
          Length = 461

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V  A +  +A      E  P+ +V+D  +     F
Sbjct: 10  RVLVVDDEPNILELLTAALRLSGFEVRGAATGADAL-RAASEFGPDIVVLDVMLPDQDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V +L      E  IAG  AG + ++ KPF+ + +   +R + +  +
Sbjct: 69  SVARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVR 128


>gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 247

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD   +VR++        GF V        A +   ++  P  +V+D  M  +  
Sbjct: 3   QSILVVDDDPVVRELVSQYLEGRGFKVATLEHGM-ALQRKLQDERPALVVLDIMMPELDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + +
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 122 KS 123
            S
Sbjct: 122 GS 123


>gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +++V+   ++  V R      GF V    +  E       +  P  +V+D  +  +    
Sbjct: 18  VVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTD-RPTAVVLDIGLPDMDGLD 76

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R    G    V ++    +    I G   G + +L+KPFN   L   +R + + 
Sbjct: 77  LCRRLREAGDWTPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRR 133


>gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
          Length = 1028

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD   I      ++     + +        A E  +++   + +++D  M  +   
Sbjct: 706 KILVVDDEIINLHSIANILKHENYDITCVADGESAIEILKRDKSFSLVILDIMMPDMTGY 765

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L      + +I   + GAN FL KPF  + L    + L ++
Sbjct: 766 QVCKAIRETDNLFEMPILMLTASNQPKTVIQAFKEGANDFLYKPFEVDELLARTKTLTEL 825

Query: 121 QKS 123
           +KS
Sbjct: 826 KKS 828


>gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKEFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 227

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 228

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    ++  + +++D  M  +  F
Sbjct: 7   NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 66  DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122

Query: 121 QK 122
            +
Sbjct: 123 YQ 124


>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD    +R + R      G+ V EA    EA E   K    + +V+D  M  + 
Sbjct: 1   MAKILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMV-KNDDFDIIVMDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            + A  +++     + V  L    +    + G   G + +++KPF+ + L   +R +   
Sbjct: 60  GYSAC-KEIQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNR 118

Query: 121 QKS 123
            K+
Sbjct: 119 AKA 121


>gi|220933691|ref|YP_002512590.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995001|gb|ACL71603.1| adenylate/guanylate cyclase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 380

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LL+VD   + R +        G  V +A S  +A +   ++ + + +V+D  M G+  
Sbjct: 26  RTLLVVDDQEVNRLILARHLELLGHRVLQADSGPQALQILREQSV-DGVVLDVVMRGMDG 84

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++  P    + V  + +  +    +    AGA+ FL KP   E L   +R L +
Sbjct: 85  YEVCRRIKADPETWFIPVVMVTVLNNQADRVRAMEAGADEFLSKPVYPEELSARIRSLMR 144

Query: 120 MQKSKDENQF 129
            + ++   + 
Sbjct: 145 WRDARKALEQ 154


>gi|209693817|ref|YP_002261745.1| osmolarity response regulator [Aliivibrio salmonicida LFI1238]
 gi|208007768|emb|CAQ77889.1| response regulator homolog OmpR [Aliivibrio salmonicida LFI1238]
          Length = 239

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQ-MDRLLARETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q
Sbjct: 65  SICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123


>gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 298

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL +D    + KV +      G+ +  ATS+ EAR    +E  P+ +++D  +      
Sbjct: 74  TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRL-QETPPDLVILDLMLPDGDGL 132

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +   L   + V  L         + G   GA+ +++KPF    L   ++   +
Sbjct: 133 EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 189


>gi|146301929|ref|YP_001196520.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146156347|gb|ABQ07201.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1400

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 4/119 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             ++L+V+   ++RK  ++L     + + EA +   A E   K  +PN ++ D  M  +  
Sbjct: 1145 QTILIVEDHKVLRKFMKNLLKK-DYNIIEAENGKIALEKALK-FVPNLIISDVIMPEMVG 1202

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E  + +++    + + V  L           G  +GA+ ++ KPFN    R  ++ L 
Sbjct: 1203 TELCSKIKENIKTSHIPVILLTSRSSLVYKFEGLESGADDYISKPFNLMEFRLRVKNLL 1261


>gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    + ++ +    +FG++V  A       +      + + ++ D  +    
Sbjct: 1   MKKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMG-KRLVNNHIYDLIITDVILPHIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R   +  ++ +  L      +  + G  +GA+ +++KPF+   L   +  L 
Sbjct: 60  GFELCKEIRA--VHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILL 117

Query: 119 QMQK 122
           + + 
Sbjct: 118 KRKN 121


>gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 250

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 8/126 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-----PNYLVIDESMEG 58
           LL+++    +  + R      GF V  A +                  P  +V+D  +  
Sbjct: 6   LLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLDLMLPD 65

Query: 59  VLEF--IAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           +        +R +P       +  L  + D    + G   GA+ +L KPF    L   +R
Sbjct: 66  MDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPRELLARVR 125

Query: 116 ELPQMQ 121
            L +  
Sbjct: 126 ALLRRH 131


>gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1467]
          Length = 229

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++     ++ G+ V +A    EA          + L++D  M  + 
Sbjct: 1   MK-ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  L  +      I G  AGA+ ++ +PFN   +   ++ + + 
Sbjct: 60  GM-EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRR 118

Query: 121 QKSKDENQFLDAI 133
            + +   +  D +
Sbjct: 119 SQMQLTKEEPDEL 131


>gi|317474841|ref|ZP_07934111.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316908979|gb|EFV30663.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1179

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+VD +  +  + +    D  F +  A    E  +       P+ +V D+ M  +   
Sbjct: 920  SVLVVDDNVDLCNMLKLQLEDR-FNIHLAHDGVEGLKMVNFHH-PDVVVTDQMMPCMDGM 977

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-Q 119
              +  +R     + + V  L  + D +  I     GAN++++KPF+++ L   + +L  +
Sbjct: 978  EMLKRIRGDFQISHIPVIMLTAKGDEDSKIQAISQGANAYIVKPFSKDYLVVRIEQLLGE 1037

Query: 120  MQKSKDEN 127
             ++ +++ 
Sbjct: 1038 RKRFREQM 1045


>gi|239995340|ref|ZP_04715864.1| two component transcriptional regulator [Alteromonas macleodii ATCC
           27126]
          Length = 246

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +             +   A +   A    +K    + +V+D ++  + 
Sbjct: 1   MIRVLLVEDDMGLAGNIIDYLELEDMVCDHAANGVAALSLIQKHP-FDVVVLDINLPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G D  +  L      E  + G + GA+ +L+KPF+   L   +  L   
Sbjct: 60  GLSVCERVREDGNDTPIIMLTARDQLENKLEGFQKGADDYLVKPFDMPELVARVFALAHR 119

Query: 121 QKSK 124
           + S+
Sbjct: 120 RSSQ 123


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +    L    GF V  A    EA     K   P+ +++D  + G+ 
Sbjct: 1   MTEVLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAE-PDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCKNIRLKSS---VPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  +  D +
Sbjct: 117 RRGRHDDSD 125


>gi|167841262|ref|ZP_02467946.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia thailandensis MSMB43]
          Length = 255

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++++D    +R + +      GF V  A +  +  +   +    + L++D  M G    
Sbjct: 15  RIIVLDDEAEIRNILQRFLASHGFDVRSARNSTQ-LDVFLERQPYDLLILDIMMPGEDGL 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + +  L    D    + G   GA+ +L KPF    L   +R + + Q+
Sbjct: 74  AVCRRLRARGQTIPILMLTARGDPVDRVVGLELGADDYLAKPFLPRELLARVRAMLRRQQ 133

Query: 123 SKDENQFL 130
                + L
Sbjct: 134 VTLRQRDL 141


>gi|148558726|ref|YP_001257449.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
 gi|148370011|gb|ABQ62883.1| putative transcriptional regulatory protein OmpR [Brucella ovis
           ATCC 25840]
          Length = 238

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEGAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 7/123 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +++V+    +    ++     GF      S  +         + + +++D  +  +
Sbjct: 1   MKPRIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAV-DLIILDVGLPDM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +RQ+     V + +L    D    I G   GA+ ++ KPF+   +   ++ +
Sbjct: 60  SGFELCKQIRQL---RSVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAV 116

Query: 118 PQM 120
            + 
Sbjct: 117 LRR 119


>gi|312891778|ref|ZP_07751285.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311295720|gb|EFQ72882.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1330

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L+ + +   R       N   + +  A++  EA +   K+ LP+ ++ D  M  +  L
Sbjct: 1073 TILIAEDNEEFRHFLDEQLNKR-YHILLASNGKEALDMVLKQ-LPDLVISDIMMPEMSGL 1130

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +++    + + +  L      E    G +  A++++ KPFN + L   +R L + 
Sbjct: 1131 ELCDALKKNVTTSHIPLLLLTARSSDESQFEGYQVRADAYITKPFNIDILFIRVRNLLEQ 1190

Query: 121  QKSKDEN 127
            Q+ + + 
Sbjct: 1191 QEQRKQL 1197


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V        G+    A     A E  E+    + +++D  +  +   
Sbjct: 5   RILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGW-SLILLDVMLPRLSGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G    V  L         + G   GAN ++ KPF  E L   +R   + Q
Sbjct: 64  EVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQ 122


>gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
 gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R+  +      G+ V+EA    E  +  EKE   +  ++D  M  + 
Sbjct: 9   MNHVLVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEE-IHLAIVDIMMPRLD 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D  V  L  + +    + G   GA+ ++ KPF    L   +    + 
Sbjct: 68  GIRMTMKLREKY-DFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 126

Query: 121 QK 122
            +
Sbjct: 127 YR 128


>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|73540279|ref|YP_294799.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117692|gb|AAZ59955.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 243

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V       +  +   +   P  +V+D  M  V  
Sbjct: 7   TQILVVDDDPELRDLLREYLTQQGFAVSVLHDG-DGLQARLERERPALIVLDLMMPKVDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 66  LTALRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125

Query: 122 KSK 124
            ++
Sbjct: 126 LAR 128


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +      L    GF    A     A     +    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNE-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +   + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKELRSV---STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|254695542|ref|ZP_05157370.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 3
           str. Tulya]
 gi|261215933|ref|ZP_05930214.1| two-component system response regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917540|gb|EEX84401.1| two-component system response regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 238

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDTHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|238764462|ref|ZP_04625410.1| Transcriptional regulator in 2-component system [Yersinia
           kristensenii ATCC 33638]
 gi|238697274|gb|EEP90043.1| Transcriptional regulator in 2-component system [Yersinia
           kristensenii ATCC 33638]
          Length = 232

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 1   MHKILLVDDDRELTALLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 118 SNWSEQQQNVD 128


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++     R+    +    GF V  A +  +  E        + +++D  M G  
Sbjct: 1   MTRVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGA-DIVLLDLMMPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ     +V +  +         + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GTEVCRQLRQRG---NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVT 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 254

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKG-QALALQFTPDLVLLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  +    D +  ++G  +GA+ +L KPF+ E L   ++ L + 
Sbjct: 64  LCQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRR 122


>gi|153876951|ref|ZP_02004011.1| response regulator receiver protein [Beggiatoa sp. PS]
 gi|152066585|gb|EDN65989.1| response regulator receiver protein [Beggiatoa sp. PS]
          Length = 144

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+VD S    ++   + N+  +    AT+   A E    +  P+ +++D  M  + 
Sbjct: 1   MTTILIVDDSSENIELLMAVLNNIDYKFLTATTGKSAIEIVLSQK-PDLILLDVVMPDMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++       + + ++  + D +    G   GA  ++ KPF    ++  ++   
Sbjct: 60  GYEVCTILKANLTTKRIPIIFITAKDDEDDESKGFEVGAVDYITKPFRPTIIQARVKTHL 119

Query: 119 QMQKSKDENQFL 130
           +++ + +E + L
Sbjct: 120 KLKFAYEELERL 131


>gi|22123988|ref|NP_667411.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis KIM 10]
 gi|45439938|ref|NP_991477.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|21956728|gb|AAM83662.1|AE013607_11 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45434793|gb|AAS60354.1| two component system response regulatory protein [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 240

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 9   MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDIMMPRKNGI 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 69  ETLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRR 125

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 126 SNWSEQQQ 133


>gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51]
 gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 263

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    ++++ R      G+ V  A    EA    E E  P  +V+D  + G   LE
Sbjct: 40  ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILE-EKQPELVVLDIMLPGISGLE 98

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
            +  +R+ P   ++ V  L  + +    + G   GA+ ++ KPF+   
Sbjct: 99  VLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 146


>gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
 gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +     ++ G+         EA E  E E   + +++D  + G+ 
Sbjct: 1   MIKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHE-RFDLILLDIMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  + ++R M     + V ++  + +    + G + GA+ +L+KPF+   L   +  + 
Sbjct: 60  GFDIMEYIRPME----IPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVL 115

Query: 119 QMQKSKDENQFLDA 132
           +     +  + L A
Sbjct: 116 RRYNKTE--RRLSA 127


>gi|160885437|ref|ZP_02066440.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483]
 gi|156109059|gb|EDO10804.1| hypothetical protein BACOVA_03437 [Bacteroides ovatus ATCC 8483]
          Length = 1339

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R      F D  F + E+ +  EA E   K   P+ ++ D  M  +   
Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFK-KAPDLVISDIMMPEMDGL 1141

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201

Query: 120  MQKSKD 125
             Q+ + 
Sbjct: 1202 RQQLRK 1207


>gi|119486065|ref|ZP_01620127.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456840|gb|EAW37968.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 479

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++++VD +    ++  ++    G+ V    +   A    E  L P+ +++D  M  +   
Sbjct: 15  NIVVVDDTPDNLRLLGNILRKEGYKVRLIPNGELALSGIEL-LRPDLILLDIMMPEMNGY 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
           E   H++      DV V ++    +    +    AG   ++ KPF  + +   +    + 
Sbjct: 74  EVCQHLKAREHSRDVPVIFISAIDEVSDKVKAFEAGGVDYITKPFQVQEVLVRVETHLKI 133

Query: 120 ---MQKSKDENQFLD 131
               +   ++NQ L+
Sbjct: 134 HFLQKNLLEKNQELE 148


>gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 245

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD   +VR++        GF V        A +   +   P  +V+D  M  +   
Sbjct: 4   SILVVDDDPVVRELVSGYLQGRGFKVDTLQDGM-ALQRQLQHERPALIVLDIMMPELDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + + 
Sbjct: 63  SALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRG 122

Query: 123 S 123
           S
Sbjct: 123 S 123


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R+       + G  VF+A    EA E   +E   + +++D  M  +   
Sbjct: 6   NVLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEED-IHLMLLDVMMPRLDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ + +L  + +    + G + G + ++ KPFN   L   ++   + 
Sbjct: 65  QTTLKIREA-RNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRR 121


>gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 1096

 Score =  136 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L VD   I  +V +++    G+ +  A +  EA     +E  P+ +V+D  M G   L+
Sbjct: 702 ILAVDDEPINLQVLQNVLLPQGYRITTARNGSEALRSVAQE-RPDLIVLDVMMAGLSGLD 760

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     ++ +  L        M+AG  AGAN +++KPF ++ L   +R L +  
Sbjct: 761 VARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLLEAS 820

Query: 122 KSK---DENQFLDA 132
           +++   +EN+ L  
Sbjct: 821 RARSRAEENRELKE 834


>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R    + G+    A +  EA     +E  P+ LV+D  M G+   
Sbjct: 21  RVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALN-VIREFGPDLLVLDIMMPGLDGM 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R    G D  V +L  +   E  IAG  AGA+ ++ KPFN E +   +R + +  
Sbjct: 80  ELLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRH 138


>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 7/130 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWTVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQKSKDEN 127
            + + S   N
Sbjct: 117 MESRYSSAVN 126


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D +  +  +         F+V    +  +A +  E E   + +++D  M    
Sbjct: 1   MYKVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVE-ENKFDIVLLDVMMPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    VR+    ++V +  +    +  + I G   GA+ +++KPF+   +   +  + 
Sbjct: 60  GFDVCREVRK---FSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|298527903|ref|ZP_07015307.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511555|gb|EFI35457.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfonatronospira thiodismutans ASO3-1]
          Length = 460

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R   R +  D  +   EA S  +           + +++D  + G+   
Sbjct: 4   KILIIDDEEDIRLSLRGILEDENYQTLEAESGEQGLGLL--GPGVDLVLLDIWLPGMDGL 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ V  +    + +  +   ++GA  F+ KP + E +     +  +  +
Sbjct: 62  EVLNRLRESHPNLPVVMISGHGNIQTAVQAIKSGAFDFIEKPLSLEKVLITSEKALEFSR 121

Query: 123 SKDENQFL 130
            + EN+ L
Sbjct: 122 LRRENRKL 129


>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
           azollae' 0708]
 gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
           azollae' 0708]
          Length = 231

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LLLVD    +R+  +    + GF V  A++  E  +   +  +P+ ++ D  M  V    
Sbjct: 5   LLLVDDEPGLREAVKEYLQESGFKVQTASNAREGWDMM-QHSIPDLVISDIMMPQVDGYH 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F+  +R       + V +L  +      I G +AG +++L KPF+ + L   +  L    
Sbjct: 64  FLKQMRDDARFQALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLLVRH 123

Query: 122 KSKDE 126
             K +
Sbjct: 124 TVKTQ 128


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +  F   G+         +  +        + +++D  + G+ 
Sbjct: 1   MTRILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDY-DLIILDIQLPGMS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     DV +  +  + +    I G   GA+ F+ KPF+   L    +   
Sbjct: 60  GFEICKTIRERL---DVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHL 116

Query: 119 QMQKSKDENQFLD 131
              +     Q + 
Sbjct: 117 ARYERFKSGQKIS 129


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD       V      + GF V  A +  +A +  +    P+ +++D  M G    E
Sbjct: 12  ILIVDDILENISVLFRFLGNEGFKVLVAQNGQQALKIVDL-TRPDIILLDVMMPGLSGFE 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ + ++    D    + G + GA  ++ KPF  E +   +     + 
Sbjct: 71  VCQQLKSQQNTQDIPIIFMTALADTVDKVNGFKLGAADYITKPFQHEEVLVRINAHLSLH 130

Query: 122 KSKDENQ 128
           K K + +
Sbjct: 131 KLKKQLE 137


>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis 638R]
          Length = 228

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+++    V  + R    + G+    A                + ++ D  +  + 
Sbjct: 1   MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L      +  + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 60  GFELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKR 119

Query: 121 Q 121
           +
Sbjct: 120 K 120


>gi|315606703|ref|ZP_07881713.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251558|gb|EFU31537.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1309

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLVD    + +       D+ +    A +  EA +    +   + ++ D  M  +   
Sbjct: 1056 RILLVDDDPEIARYIAGELGDW-YRFDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGV 1114

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     +D+ V  L  + + E  + G + GA++FL KPFN E L   +  L   
Sbjct: 1115 TLVKKIKTNSNISDIPVILLTSKSEVENRLEGLKKGADAFLAKPFNMEELHILIDNLVDN 1174

Query: 121  QKSKD 125
             +   
Sbjct: 1175 IRRLR 1179


>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 244

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    + +         GF V  A     A +       P+ +V+D  + G   
Sbjct: 18  RRVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHT-WQPDLVVLDIMLPGFDG 76

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    ++       V V  L    D   ++ G   GA+ ++ KPF+   L   +  L +
Sbjct: 77  LEVCRRIQAQ---RPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLR 133

Query: 120 MQKSKDENQFLDAI 133
             +   +     A+
Sbjct: 134 RVERAQQAARTPAL 147


>gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +VD    +R +        G+    A +   A          + +V+D  M G     
Sbjct: 7   IAIVDDHRDIRDLVGKYLQKHGYRTSLAENAA-AFRRLLDRNAIDLVVLDIMMPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              ++R+    + V V  L    +    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 66  LCRYLRES---STVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRRV 122

Query: 122 KSKDENQ 128
           +S    +
Sbjct: 123 QSLPPQR 129


>gi|288925563|ref|ZP_06419496.1| putative response regulator receiver domain protein [Prevotella
            buccae D17]
 gi|288337779|gb|EFC76132.1| putative response regulator receiver domain protein [Prevotella
            buccae D17]
          Length = 1363

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLVD    + +       D+ +    A +  EA +    +   + ++ D  M  +   
Sbjct: 1110 RILLVDDDPEIARYIAGELGDW-YRFDSAPNGKEALKKLLGDTGYDLVISDVMMPEMDGV 1168

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     +D+ V  L  + + E  + G + GA++FL KPFN E L   +  L   
Sbjct: 1169 TLVKKIKTNSNISDIPVILLTSKSEVENRLEGLKKGADAFLAKPFNMEELHILIDNLVDN 1228

Query: 121  QKSKD 125
             +   
Sbjct: 1229 IRRLR 1233


>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 227

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++ +      GF V        A     +E  P+ +++D  +  +  
Sbjct: 3   KKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEEN-PDLIILDLMLPEISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    +    + G   GA+ ++ KPF  + L   ++   +
Sbjct: 62  WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSE 121


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++LLVD    +     +     G+ V  A +   A     +    +  V+D  M G+   
Sbjct: 7   TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAM-SRHKHYDLYVLDIMMPGMNGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   ++R     T+  V +L         + G   GA+ +L KPF    L   +R L + 
Sbjct: 66  ELCRNLRTR---TNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122

Query: 121 QKSKDE 126
            +   E
Sbjct: 123 GQMDAE 128


>gi|218700689|ref|YP_002408318.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           IAI39]
 gi|331653655|ref|ZP_08354656.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli M718]
 gi|218370675|emb|CAR18484.1| fused response regulator of ato opeon, in two-component system with
           AtoS: response regulator ; sigma54 interaction protein
           [Escherichia coli IAI39]
 gi|331048504|gb|EGI20580.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli M718]
          Length = 461

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +V+    +R++  +     GF      S     +      +P  +++D  + G     
Sbjct: 2   IYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIMLPGEDGIS 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R  P    + V  +  +      + G  +GA+ ++ KPF    L   ++ + +  
Sbjct: 62  ILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVLRRV 121

Query: 122 KSKDENQFLDA 132
           K ++  + L A
Sbjct: 122 KKEEPTEELSA 132


>gi|71278839|ref|YP_270816.1| response regulator/phosphatase [Colwellia psychrerythraea 34H]
 gi|71144579|gb|AAZ25052.1| response regulator/phosphatase [Colwellia psychrerythraea 34H]
          Length = 352

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     V   +   F + V  A +   A +    +  P+ +++D  M G+   
Sbjct: 15  TVLIVDDNSDNLDVLSGVLRPF-YKVKAAINGELALKVASAKNKPDIILLDIMMPGMDGY 73

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ V ++  + + +   AG + GA  ++ KP +   +   +R    +
Sbjct: 74  EVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPISVPIVLARVRAQLAL 133

Query: 121 QKSKDENQFL 130
              + E + L
Sbjct: 134 YNQQRELEIL 143


>gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 241

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R          G     A +   A +   KE   + +V+D  M G     
Sbjct: 8   ILIVDDHREIRDALVKYLEKNGIRATSAANAV-AMDVAMKEGQFDLIVLDVMMPGEDGLS 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 67  VCRRLRAQGG---IPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIKAILRRS 123

Query: 122 KSKD 125
              +
Sbjct: 124 NRAE 127


>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 254

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  ++A    +A +  + E+  + +++D  M  +  F
Sbjct: 33  NILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKID-EVKVDMVILDIMMPNMDGF 91

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 92  DVCFELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148

Query: 121 QK 122
            +
Sbjct: 149 YQ 150


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 7/120 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    +  + R    D G+ V  A       +       P+ +++D  M G+    
Sbjct: 5   ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLL--NRKPDLILLDIMMPGLDGIQ 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         + +L    + E  I G   G + ++ KPF+ E L   +    + +
Sbjct: 63  VCRWIR---DSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRRE 119


>gi|329937641|ref|ZP_08287160.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
 gi|329303040|gb|EGG46928.1| two-component system sensory histidine kinase [Streptomyces
            griseoaurantiacus M045]
          Length = 1370

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +  +  +          +++D  M  +  
Sbjct: 1250 RTVLVVDDDARNLFALSGILELHGFQVLHAENGRKGVDTLLAHPEVCLVLMDVMMPEMDG 1309

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R +P   D+ +  +  +           +GA+ ++ KP +   L   +R   
Sbjct: 1310 YAATAEIRGLPRYADLPIIAVTAKAMPGDREKSLLSGASDYVTKPVDAGELIARVRRWL 1368


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +LL + + + +++   L   FG  V  A +  +A   CE +   + +++D  M  +   E
Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKH-FDLILMDVQMPHMGGFE 1798

Query: 62   FIAHVRQMP--LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              A +R++    G    +  +         +    AG + ++ KP N + L+  + +  
Sbjct: 1799 ATAQIRKLESNEGIHTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQLKSMIEKYL 1857



 Score = 50.6 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 18/140 (12%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPNYLVIDESME-GV 59
            L+VD +    KV   +  +FG       +  +A +      +      +L ID  ++  +
Sbjct: 1604 LVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNRPYEFLFIDAQIDTNI 1663

Query: 60   LEFIAHVRQMPLGTDVFVYYLLM----EVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            ++    + + P  +   V  L+         E   +        +L KP +   +   ++
Sbjct: 1664 VDL---ISEDPKLSKTNVIMLICGGGQRGCPENASSLIG----GYLSKPVSPSEMLEILQ 1716

Query: 116  E--LPQMQKSKDENQFLDAI 133
            +  + +  K   + Q +  I
Sbjct: 1717 KQGISRQSKVCKKIQPISEI 1736


>gi|331683897|ref|ZP_08384493.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli H299]
 gi|331078849|gb|EGI50051.1| acetoacetate metabolism regulatory protein AtoC
           (Ornithine/argininedecarboxylase inhibitor) (Ornithine
           decarboxylase antizyme) [Escherichia coli H299]
          Length = 461

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1322

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +        +   + V  A +  EA +  E++ + + ++ D  M  +   
Sbjct: 1076 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1133

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + V  L  + + E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1134 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1193

Query: 121  QKSKDE 126
            ++    
Sbjct: 1194 RERLRR 1199


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD  H +  +      +  + V++  S  EA E  E+E L +  ++D  + GV  F
Sbjct: 4   KILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREEL-DLAILDIMLPGVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICQKIRERYTY---PIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
 gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA +  + E  P+ L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G++ ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIREESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LKRVK 121


>gi|170693022|ref|ZP_02884183.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170142020|gb|EDT10187.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 246

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  +      ++  P+ +V+D  M G     
Sbjct: 7   VLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + ++        G+ V   +   + RE  +    P+ +++D  + G+ 
Sbjct: 1   MPNILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASP-PDLVILDLMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + +  L    D    + G   GA+ ++ KP     L   +R L 
Sbjct: 60  GLQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117

Query: 119 QMQKSKDENQFLDAI 133
           +     +     D I
Sbjct: 118 RRSSLSEPQSASDQI 132


>gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 221

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    + +V        G+ V    +  +A E  +K    + +++D  M  + 
Sbjct: 1   MK-ILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCY-DVIILDIMMPVMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  +    G   ++  L  + + +  + G  +GA+ +L KPF+ + L   +R   + 
Sbjct: 59  GITALKQIRESGDKTYILMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERR 118

Query: 121 QKSKDENQF 129
           ++    N+ 
Sbjct: 119 EEDFTPNEL 127


>gi|51245653|ref|YP_065537.1| Pho family two-component response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50876690|emb|CAG36530.1| probable two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 208

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ +   + R + +    ++G+ V EA    EA E   +   P   +ID  M    
Sbjct: 16  MK-VLVAEDELVTRLMVQVSLENWGYDVLEAKDGKEAMELFGRGEAPRIAIIDWEMPEVD 74

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+       ++  L        ++ G  AGA+ ++ KPFN + LR  +R   
Sbjct: 75  GLEVCKRLREQESENPPYIILLTAHGSKNDILLGFDAGADDYITKPFNSDELRARVRVAD 134

Query: 119 QMQKSKD 125
           ++ +S+D
Sbjct: 135 RLVRSQD 141


>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
           sp. CB0101]
          Length = 248

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    +      +ELLP+ ++ D  M      
Sbjct: 23  RLLLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEDGWAKA-QELLPDLVISDVMMPRLDGY 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             +  +R         V +L  +      I G +AG + ++ KPF+ + L
Sbjct: 82  GLLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDEL 131


>gi|116623704|ref|YP_825860.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226866|gb|ABJ85575.1| response regulator receiver modulated diguanylate cyclase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 325

 Score =  136 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L  + + + + + + +   +G+    A    EA    E +  P   ++D  M G+   
Sbjct: 22  RVLAAEDNPVFQSMLKTMLTRWGYEAVIARDGTEAWNILEGDGAPRLAILDWMMPGMDGV 81

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V++  L    + + +I G  AGA+ +L KPFN   LR  +R   ++
Sbjct: 82  EICRRIRSANREPYVYILLLTARTESQDLIEGMDAGADDYLTKPFNAHELRVRIRAGRRI 141

Query: 121 QKSKDEN 127
              ++E 
Sbjct: 142 LDLQEEL 148


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  + +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           +    Q +
Sbjct: 126 NLTTKQTI 133


>gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 813

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 9/132 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L ++    + K+   +     + V  AT               + +++D  +    
Sbjct: 1   MK-ILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAY-DLILLDWMLPKLT 58

Query: 59  VLEFIAHVRQM-----PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            +E    +R           D  +  +         + G  AGA+ +L+KP + E L   
Sbjct: 59  GIELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLAR 118

Query: 114 MRELPQMQKSKD 125
           +R L + +  + 
Sbjct: 119 IRALLRRKSGER 130



 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 25  GFMVFEATSVCEAREFCEKELLPNYLVIDESME---------------GVLEFIAHVRQM 69
           G+ +   +   +  E  E+   P+ L++D                     +E    +R  
Sbjct: 528 GYQLTLLSEPQQFWEILEQSE-PDLLILDIKFSKPASSDQEKERSSFFNGIELCQVIRND 586

Query: 70  PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                + V  L +  D E +  G  AGA+ FL KP     L   +R   + +K 
Sbjct: 587 LRWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVASELLIRVRSRLKQRKM 640



 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM----EG 58
           +LL+++S   +R++       +G     AT++ EA E        N +++D +       
Sbjct: 381 TLLILESDMTLRQLLVKEALTWGIETQVATTLDEA-EKLLNSGQCNVMLLDLNFYDSEPT 439

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+F+A +        +    L  E  FEK I  AR G + FL+KP     +   + +  
Sbjct: 440 GLQFLATL--NRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTL 497

Query: 119 QM 120
           + 
Sbjct: 498 RQ 499


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +        G+    A +  +  E       P+ +V+D  + G   F
Sbjct: 4   RVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKF-ASFSPHIIVLDLMLPGKDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L  +      + G   GA+ ++ KPF    L   ++ L + 
Sbjct: 63  SVCKEIRSQSS---VPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRR 119

Query: 121 QKSKDEN 127
                ++
Sbjct: 120 VNLSGQD 126


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L++D    +R++     N  GF  F A    +  +  ++E + + L++D  +     
Sbjct: 4   KKVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKV-DILILDIMLPDEDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            EF   +R      D+ + +L  +      I G   GA+ ++ KPF+   +   ++ + +
Sbjct: 63  WEFCQKIR---PEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLR 119

Query: 120 MQKSKDENQFL 130
                 EN  +
Sbjct: 120 RYNKAAENAKI 130


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D+ + G 
Sbjct: 1   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-RETKPDLVLLDQMLPGR 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 117 LRRSEEPAPEQL 128


>gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 241

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA    EA E        + +++D  + G   +
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDY-DVILLDLMLPGKDGI 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           E    +R         +  L  + +    + G   G + +++KPF+   +   ++
Sbjct: 68  EVCKEIRAQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119


>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   ++  P+ +V+D  +  +   
Sbjct: 24  RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTA-RDFRPDAVVLDMMLPDMDGL 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 83  TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142

Query: 123 SKDENQFLDAI 133
           + D  +  D++
Sbjct: 143 AAD--RRSDSV 151


>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 235

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   LL+V+    +  + +      G+ V  +++  E  E  +K       ++D  +  +
Sbjct: 1   MKEKLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKK-YKFALAMVDIMLPEM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F        +  D+ +  L  +      + G + GA+ ++ KPF+   +   +    +
Sbjct: 60  DGFTLCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLR 119

Query: 120 MQKSKDE 126
             +  D+
Sbjct: 120 RYRKMDK 126


>gi|241762806|ref|ZP_04760870.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
 gi|241368225|gb|EER62417.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax delafieldii 2AN]
          Length = 367

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      K+   L    G++   A+S  +A         P+ +++D  M  +  F
Sbjct: 8   TILVVDDEERNVKLLETLLQADGYITMSASSGRDALAQASANP-PDLILLDIMMPDLDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    V +  +    D +  +    AGA  FL KP +R  L+  +R L ++
Sbjct: 67  DTTVLLKADPRTQAVPIIVITSLDDRQSKLRALEAGAEEFLSKPIDRADLKVRVRNLLRL 126

Query: 121 QKSKD 125
           ++  D
Sbjct: 127 KEYAD 131


>gi|228983785|ref|ZP_04143982.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775980|gb|EEM24349.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEAIKLIE-QKDFDIILLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
 gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    + ++ +  F   G+ V EA +  E  E   ++  P+ +++D SM G+  F
Sbjct: 4   KILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLARK--PDIILLDVSMPGIDGF 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         + +L   ++ +  I G + G + +++KPF+ E L   +    + 
Sbjct: 62  EVCRRIRSH---ISCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHLRR 118

Query: 121 QKSKDEN 127
           ++ K  N
Sbjct: 119 EERKRLN 125


>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    V +    +  + G+ V       EA    + E   +  V+D  +  +   
Sbjct: 2   RILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDY-DLAVLDLGLPKMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D+ V  L     + + + G  AGA+ +L KPF  E L   +R L +   
Sbjct: 61  AVLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRAA 120

Query: 123 SKD 125
            + 
Sbjct: 121 GRA 123


>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 221

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|91205788|ref|YP_538143.1| response regulator PleD [Rickettsia bellii RML369-C]
 gi|91069332|gb|ABE05054.1| Regulatory components of sensory transduction system [Rickettsia
           bellii RML369-C]
          Length = 457

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      K+      +  + VF+A+S  EA    +KE + + +++D  M  +  F
Sbjct: 4   NILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKV-DIVLLDVMMPEMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L +M
Sbjct: 63  EVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSLSRM 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  ++
Sbjct: 123 KSLIDELKIRNS 134



 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60
             +LL++   +  K  + +       V   ++  E       E  P+ +VI  ++E    
Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEE--TDTINEYKPDLIVISSTLENEDP 210

Query: 61  -EFIAHVRQMPLGTDVFVYYLLMEVDF-------EKMIAGARAGANSFLLKPFNRETLRF 112
               A +R  P  + V +  L +  D        + ++ G   G N + + P +   L  
Sbjct: 211 LRVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAA 269

Query: 113 AMRELPQMQKSKDENQ 128
            ++   + ++ +D  +
Sbjct: 270 RIKTQLRRKQYQDNLR 285


>gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 460

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         + V  A    EA +   K+  P+ +++D  M  +  F
Sbjct: 4   KILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQ-QPDIILLDIMMPKMNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL T + +  +    D    + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLTRL 122

Query: 121 QKSKDENQF 129
           +   DE + 
Sbjct: 123 KMIIDEWRL 131



 Score = 78.7 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D      +   ++       +   +   EA      E   + ++ D         
Sbjct: 158 NVLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEAL-KVGIENGYDLIISDMQFSKTDGL 216

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R         +  L  + D   ++     GAN +L  P +   L   +    + 
Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKR 276

Query: 121 QKSKDENQF 129
           ++ +D  + 
Sbjct: 277 KRYQDALRM 285


>gi|330806958|ref|YP_004351420.1| response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375066|gb|AEA66416.1| Putative response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 246

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARTVPNTEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D +  +R   R   +   + V EA       E   + ++P+ +V D  M  +    
Sbjct: 655 VLVIDDNSDIRTYLRSALSPM-YKVSEAVDGKSGLELARR-IMPDLVVSDIMMPVMDGLE 712

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++Q P  + + V  L      E+   G   GA++++ KPF+   L   +  L Q +
Sbjct: 713 FCRQLKQDPAVSHIPVILLTARSLDEQRAEGYEYGADAYISKPFSLRLLLSRIDNLIQSR 772

Query: 122 KSKDEN 127
           K   + 
Sbjct: 773 KKLGQL 778


>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 221

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|317481176|ref|ZP_07940251.1| two component regulator propeller [Bacteroides sp. 4_1_36]
 gi|316902672|gb|EFV24551.1| two component regulator propeller [Bacteroides sp. 4_1_36]
          Length = 1351

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +       F+D  F V  A +    +E   KE +P+ +V D  M  +    
Sbjct: 1095 LLVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKE-IPDIIVSDIMMPVMDGNE 1152

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + +  L  +        G + GA+S+L KPF+   L   +  L Q +
Sbjct: 1153 MCRELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLLQSR 1212

Query: 122  KSKD 125
            ++  
Sbjct: 1213 RNLA 1216


>gi|309791916|ref|ZP_07686398.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308226034|gb|EFO79780.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 484

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL+D +  +  +   L     + +F A +  E  +   +   P+ +++D  M G+  F
Sbjct: 5   TILLIDDNPQIHSIISDLLRPLDYQIFAALNGQEGLDLAHQH-RPDLVLLDVMMPGMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R     + V V  +    D    + G  +GA+ F+ KPF+   LR  +  +
Sbjct: 64  AVCQALRSDAQLSKVPVIMITALDDRGSRLRGFESGADDFIGKPFDTIELRARVATV 120


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTTPDIVLMILDVMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IDVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSKDENQ 128
            + + +N+
Sbjct: 119 SQKQVKNE 126


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R      G+         +A +          ++ D  + G  
Sbjct: 1   MKKILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALII-DLMLPGKN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R +    +V +  +  + +    I G   GA+ +L KPF+   L   ++   + 
Sbjct: 60  GF-DIIRDVRSTQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRR 118

Query: 121 QKSKDENQFLDAI 133
            +    N+  + I
Sbjct: 119 YERLKGNKTQEEI 131


>gi|270294551|ref|ZP_06200753.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
 gi|270276018|gb|EFA21878.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
          Length = 1351

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +       F+D  F V  A +    +E   KE +P+ +V D  M  +    
Sbjct: 1095 LLVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKE-IPDIIVSDIMMPVMDGNE 1152

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++    + + +  L  +        G + GA+S+L KPF+   L   +  L Q +
Sbjct: 1153 MCRELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLLQSR 1212

Query: 122  KSKD 125
            ++  
Sbjct: 1213 RNLA 1216


>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E+  + + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEV-HLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 IESR 120


>gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 231

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R          G  VF+A    EA E  +KE   + +V+D  M  + 
Sbjct: 1   MFNVLVVDDEKEIRDAIDIYLRGEGMKVFKAKDGVEALELLDKEK-IHLIVLDIMMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIKTCLKIREK-RNLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRR 118

Query: 121 QKSKDENQ 128
            +   E +
Sbjct: 119 YQKPLELE 126


>gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076450|gb|ADJ65849.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 240

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R +         +  F A    E       E   + +++D  M G   LE
Sbjct: 7   VLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSE-RIDIIILDLMMPGEDGLE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     +  +  L         I G   GA+ +L KPF+   L   ++ + +  
Sbjct: 66  LCRELRKK---RNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRA 122

Query: 122 KSKDENQFLDA 132
           +S  E   L+A
Sbjct: 123 RSFPE--KLEA 131


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ + +A    EA E   KE   + L++D  M  + 
Sbjct: 42  MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEIL-KENEVHLLIMDVMMPRLD 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 101 GIRATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 159


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  +         F V       EA E+ +     + +++D  +  + 
Sbjct: 1   MK-ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNY-DLIILDIMLPKMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +  V  L      E  I G   GA+ +L+KPF+   L   +R + + 
Sbjct: 59  GYEVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118

Query: 121 QKSKDENQF 129
           +     N+ 
Sbjct: 119 KYGNVSNEL 127


>gi|322418221|ref|YP_004197444.1| Fis family two component sigma54 specific transcriptional regulator
           [Geobacter sp. M18]
 gi|320124608|gb|ADW12168.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. M18]
          Length = 453

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R+V  +     G+ V+ A       +  E E  P  ++ D  M G+  F
Sbjct: 4   KILIIDDDSSLRRVLEYNLQQEGYDVYTAADGAAGLQLFE-ERSPQLVITDLKMPGMTGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  L      +  +   + GA  +L KPFNRE L+  + +  Q+Q 
Sbjct: 63  EVLSTVKERAPSTVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKGLQLQG 122

Query: 123 SKDENQFLDA 132
             +EN+ L  
Sbjct: 123 LSEENRLLKE 132


>gi|162451119|ref|YP_001613486.1| response regulator/GGDEF domain-containing protein [Sorangium
           cellulosum 'So ce 56']
 gi|161161701|emb|CAN93006.1| response regulator/GGDEF domain protein [Sorangium cellulosum 'So
           ce 56']
          Length = 391

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++ D   + R++   +    GF V       EA E   +  + + +++D  M     L
Sbjct: 25  RIVVADDDRLARQMLVSILQKAGFQVEAVDDGQEAIELIGRGGV-DLVLLDIVMPRLTGL 83

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++ M   + + V  + ++ D    + G + GA+ ++ KPF  E L   +  + ++
Sbjct: 84  EACRLLKSMTSESFLPVVLVTVKSDTANRVEGLKIGADDYVCKPFEEEELLARVGAMLRI 143

Query: 121 QKSKDE 126
           ++  D+
Sbjct: 144 KRLHDQ 149


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+      +  +A +    E   + +++D  +  + 
Sbjct: 1   MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSED-FDAILLDLMLPDLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++       +  +         ++G   GA+ +++KPF  E L   +R + + 
Sbjct: 60  GL-EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118

Query: 121 QKSKD 125
            K + 
Sbjct: 119 VKIEK 123


>gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont]
          Length = 239

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVIDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|295086435|emb|CBK67958.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1339

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R      F D  F + E+ +  EA E   K+  P+ ++ D  M  +   
Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1141

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201

Query: 120  MQKSKD 125
             Q+ + 
Sbjct: 1202 RQQLRK 1207


>gi|237719759|ref|ZP_04550240.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451028|gb|EEO56819.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1348

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R      F D  F + E+ +  EA E   K+  P+ ++ D  M  +   
Sbjct: 1093 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1151 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1210

Query: 120  MQKSKD 125
             Q+ + 
Sbjct: 1211 RQQLRK 1216


>gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
           17244]
          Length = 235

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M+  +L+V+  + V+ +         +    A +  +A +       P+ +++D  +  +
Sbjct: 1   MNRLILVVEDDNAVKNLISTTLESKEYKFHTAKNGKQALDEAIS-RKPDVILLDLGLPDM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++++   +++ +  +    + +  I    AGA+ +L KPF+ + L   +R   +
Sbjct: 60  DGV-DIIKKIRGWSNMPIIVVSARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFR 118

Query: 120 MQKSKDEN 127
               ++ N
Sbjct: 119 RLDYQNSN 126


>gi|166366489|ref|YP_001658762.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166088862|dbj|BAG03570.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 368

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD      ++   +  + G+ V +A +   A     + L+P+ +++D +M  +   
Sbjct: 9   SVLIVDDLPNNVRLLSIMLTEKGYQVRKAINGQMALNTV-RSLIPDLILLDINMPDLNGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V ++    D    +   + G   ++ KPF  E +   +     +
Sbjct: 68  QVCEQLKADEKTREIPVIFISALDDVLDKVKAFQVGGVDYISKPFQGEEVMARIENQLTI 127

Query: 121 QKSKDENQ 128
            + K + Q
Sbjct: 128 SRQKKQLQ 135


>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
 gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
          Length = 231

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+    +++V  + F   GF V  A S   A     KE   + +++D  +  +    
Sbjct: 5   VLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAV-KEERFDLVLLDLMLPDMSGTE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P  + V V  +  + +    I G   GA+ +++KPF+   L    R + +  
Sbjct: 64  ICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRS 123

Query: 122 KS 123
           +S
Sbjct: 124 ES 125


>gi|187919315|ref|YP_001888346.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717753|gb|ACD18976.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  +      ++  P+ +V+D  M G     
Sbjct: 7   VLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQ-MRAALEQGAPDLIVLDLMMPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRAVPVLMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+LLV+    +      L    GF V  A     A    ++    + +++D  + G+ 
Sbjct: 1   MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRN-AIDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +     V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKRLRAVSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|23016209|ref|ZP_00055967.1| COG3437: Response regulator containing a CheY-like receiver domain
           and an HD-GYP domain [Magnetospirillum magnetotacticum
           MS-1]
          Length = 379

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +    K+   L  DF + V  A S  +A    + E  P+ +++D  M  +   
Sbjct: 8   TVLVVDDTPDNLKLMSGLLKDF-YRVKIANSGVKALAIAQSETPPDLILLDIMMPEMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ V +L  + + +    G R GA  ++ KP +   +   +    ++
Sbjct: 67  EVCRRLKSDPATREIPVIFLTAKAETQDEEMGLRVGAVDYITKPISPPIVMARVETHLKL 126

Query: 121 QKSKD 125
           + S D
Sbjct: 127 KASAD 131


>gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
 gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia
           sp. 1NLS2]
          Length = 458

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A    +A E C++    + +++D  M  +  F
Sbjct: 4   RVLVVDDVPANVKLLEARLSAEYFDVVTANCGTQALEICQRAEC-DIVLLDVMMPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCRRLKSNPRTHFIPVVMVTALDSPSDRVRGLDAGADDFLTKPVSDVVLIARVRSLTRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +   
Sbjct: 123 KMMTDEMRMRA 133



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD      +    +  +    V    +  EA     +    + L++  ++E     
Sbjct: 157 KILLVDDRPSSYERLAPVLAEE-HAVDVEPNPSEALFHAAENNY-DLLIVSLNLENYDGL 214

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
              + VR +     V +  L    +  +++ G   G N +LL+P ++  L  
Sbjct: 215 RLCSQVRSLERTRSVPLLALSEADNNTQLLRGLEIGVNDYLLRPVDKNELLA 266


>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + ++        G+ VF+A +  +  +  +K    + +++D  M G+  
Sbjct: 5   TNILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNE-IHLVLLDIMMPGMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+     ++ +  L  +      I G   GA+ ++ KPFN   L   ++   +
Sbjct: 64  MEMCRKIRE---TNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLR 120

Query: 120 MQKSKDEN 127
                + N
Sbjct: 121 RYTQLNPN 128


>gi|253699609|ref|YP_003020798.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251774459|gb|ACT17040.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 383

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +++VD +    ++      +  + +F ATS  +A E    +  P+ +++D  M G
Sbjct: 1   MKRQTVMIVDDTPANIEILSETLGEE-YELFFATSGADALELIRADK-PDLILLDIMMPG 58

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +      + ++  P   D+ + ++   +  E+ I G   GA  +L KP +   +R  ++ 
Sbjct: 59  MDGYELCSILKGDPATRDIPIIFVTAMIGEEEEIKGLELGAIDYLTKPISPHIVRARVKN 118

Query: 117 LPQMQKSKDENQFLDA 132
             ++++ +D  + L +
Sbjct: 119 HLELKRYRDLLETLAS 134


>gi|153005118|ref|YP_001379443.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028691|gb|ABS26459.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 509

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD     R+V   +     + V  A     A +   +E  P+ +++D  M  +   
Sbjct: 195 RLLVVDDEADAREVLTEVLEPE-YEVMLAEDGEAAVDLAREEH-PDVVLMDLFMPRLDGL 252

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R     +D+ V ++    D    +     GA  +L KPF+   LR  +    ++
Sbjct: 253 QALERLRSDASTSDIPVIFVSGHGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 312

Query: 121 QKSKDENQFLD 131
            +S    + L 
Sbjct: 313 VRSHVALRELA 323


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D +  +  V          +   A    EA     ++  P  +++D  M    
Sbjct: 1   MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMF-RQYNPAVVLLDVMMPKED 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R     +DV V  +    +  + I G   GA+ +++KPF+   +   +R + 
Sbjct: 60  GYEVCRKIRAK---SDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAIL 116

Query: 119 QMQKSKDENQF 129
           +   +K EN+ 
Sbjct: 117 RRM-TKKENEQ 126


>gi|15892244|ref|NP_359958.1| response regulator PleD [Rickettsia conorii str. Malish 7]
 gi|15619381|gb|AAL02859.1| regulatory components of sensory transduction system [Rickettsia
           conorii str. Malish 7]
          Length = 450

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GCEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|74312742|ref|YP_311161.1| acetoacetate metabolism regulatory protein AtoC [Shigella sonnei
           Ss046]
 gi|73856219|gb|AAZ88926.1| response regulator of ato [Shigella sonnei Ss046]
 gi|323168621|gb|EFZ54301.1| acetoacetate metabolism regulatory protein atoC [Shigella sonnei
           53G]
          Length = 461

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120]
 gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator
           domains [Nostoc sp. PCC 7120]
          Length = 1155

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD +  +R     +    G+ V+ A +  E      +EL PN +V D  M     L
Sbjct: 798 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKV-QELTPNLIVTDLMMPLVTGL 856

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  VR         +  L  +VD E  I     GA+++L KPFN   L   +R L  +
Sbjct: 857 EMIRMVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 916

Query: 121 QKSKDENQFLD 131
           +++  E + L+
Sbjct: 917 KEN--EKRVLE 925



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       +    F    + V  A S   A +   +E     ++ D+ M  +   
Sbjct: 10  KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118
                      D+    L    D E ++    AG    ++ KP+  E L+  +R+  
Sbjct: 69  EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125


>gi|315606855|ref|ZP_07881864.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251520|gb|EFU31500.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1328

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +++ +    + +  +       F V    +  EA     KE +P+ +V D  M  +  
Sbjct: 1071 QHIIVAEDDDEIAQYLKAELEK-DFRVTLCPNGQEALNTVFKE-MPSLVVSDIMMPVMDG 1128

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                A ++       + V  L  +   E  + G   GA+++++KPFN + L   +  L  
Sbjct: 1129 NTLCARLKSNVNTNHIPVILLTAKSRDEDRLEGLETGADAYIVKPFNMDILHRTITNLLH 1188

Query: 120  MQKSKD 125
             ++   
Sbjct: 1189 QRELLR 1194


>gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 233

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +R          G+ V EA S  EA E  +K    N  V+D  + G  
Sbjct: 1   MK-ILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSI 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              + + H+R      ++ +  L    + E  + G   GA+ ++ KPF+ + L   +R L
Sbjct: 60  DGFDVLKHIRTRS--QNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRAL 117

Query: 118 PQM 120
            + 
Sbjct: 118 IRR 120


>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 221

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
 gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
          Length = 229

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      + GF      S  EA     ++   +  V+D  +     F
Sbjct: 4   KILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEAL-KLIRDHKFDLAVLDVMLPDCSGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  HLCEEIRSHYNY---PVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRR 119

Query: 121 QKSKDENQF 129
               +  + 
Sbjct: 120 YMRYNSQKR 128


>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
           [Corynebacterium pseudotuberculosis C231]
 gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 237

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++        GF V  A S  EA E   KE  P+  ++D  M G+  
Sbjct: 9   KRILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIA-KEFKPDAFILDVMMPGMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +    G D  V YL  +   E  I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 68  YELLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|258593571|emb|CBE69912.1| Acetoacetate metabolism regulatory protein atoC (Ornithine/arginine
           decarboxylase inhibitor) (Ornithine decarboxylase
           antizyme) [NC10 bacterium 'Dutch sediment']
          Length = 487

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R++ R + +  G+ V  A    EA   C +E   + ++ D  M G    
Sbjct: 5   RILVVDDEGPQREILRTILSAEGYSVETAPGGTEALRRC-QEKSYDLVLTDLRMPGTDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +       V  +      +      + GA  +L KP  RE L   ++   +  +
Sbjct: 64  SLVERLIRDDPPTLVVLMTAYGSLDSAEQALKKGAFDYLTKPLEREELLLTVKRAFERIQ 123

Query: 123 SKDENQFL 130
              EN+ L
Sbjct: 124 LSRENRLL 131


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  + +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           +    Q +
Sbjct: 120 NLTTKQTI 127


>gi|158335939|ref|YP_001517113.1| response regulator [Acaryochloris marina MBIC11017]
 gi|158306180|gb|ABW27797.1| response regulator [Acaryochloris marina MBIC11017]
          Length = 126

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++++VD S  +R +   +    G  V EA     A+   +    P+ ++ D  M  + 
Sbjct: 1   MTTVMVVDDSPTMRAMLTDMLQRNGLEVIEAEDGLAAKTMLQDSSYPDLVITDIVMPRMN 60

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    V+      ++ V     + +      G + G ++++ KPFN   +   +R+L 
Sbjct: 61  GYELCRWVKNDLTDRNLPVIMCSTKGEAFDRHWGMKQGGDAYITKPFNPSEMLDLIRKLL 120

Query: 119 QMQ 121
           + +
Sbjct: 121 KTR 123


>gi|71279016|ref|YP_268481.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
           34H]
 gi|71144756|gb|AAZ25229.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
           34H]
          Length = 242

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 2/130 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+D    + ++         F V               +   + +++D  M  +  
Sbjct: 9   KHILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAF-DDSFDLILLDVMMPILNG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++ +       +  L  + D    I G   GA+ +L KPF    L   ++ + +  
Sbjct: 68  F-EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRRI 126

Query: 122 KSKDENQFLD 131
                   L 
Sbjct: 127 SIVKSQSTLA 136


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V  A +  E  E    E   + +++D  +  +  
Sbjct: 3   KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQ 120

Query: 122 KSKD 125
             + 
Sbjct: 121 DIEA 124


>gi|78358043|ref|YP_389492.1| two component Fis family transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220448|gb|ABB39797.1| two component transcriptional regulator, Fis family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 465

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R   R +  D G+ V EA +  E  +    E  P+ + +D  + G+   
Sbjct: 4   RVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLA-TETPPDLIFLDIWLPGMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                       + V  +    + E  +   + GA  F+ KP + E +  +  +  +  +
Sbjct: 63  EVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYYR 122

Query: 123 SKDENQFLDA 132
            + ENQ L +
Sbjct: 123 LRRENQALRS 132


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score =  136 bits (344), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 11  RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPGMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 129 SLTTQQTI 136


>gi|325103127|ref|YP_004272781.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM
           12145]
 gi|324971975|gb|ADY50959.1| transcriptional regulator, Crp/Fnr family [Pedobacter saltans DSM
           12145]
          Length = 349

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L+++ +  +R+    +    G+ V  A +     E   +  LP+ ++ D  M   
Sbjct: 1   MKNKILIIEDNLDIREGTAEILELAGYEVLTAPNGKAGVEMA-QNNLPDLIICDIMMPEL 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +  + + P    +   +L  + +   +  G   GA+ +L KPF+   L  A+   
Sbjct: 60  DGYGVLYLLGKNPDTASIPFIFLTAKAERIDLRKGMEMGADDYLTKPFDDIELLNAIESR 119

Query: 118 PQMQKSKD 125
            + +K + 
Sbjct: 120 LKKRKQQK 127


>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R        + G  V +A    EA E    E   + +++D  M  +   
Sbjct: 5   TVLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEML-HENEVHLILLDVMMPRLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R      ++ +  L  + +    I G + GA+ ++ KPFN   L   ++   + 
Sbjct: 64  SATHRIREE-KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120


>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
 gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
          Length = 239

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
             +LLVD    +  +        GF  V  A +  EA   C KE  P+ +++D  +  + 
Sbjct: 7   KRILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAAC-KENAPDVVILDIMLPDMD 65

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +   V +L    D    I G  +G + ++ KPF+ + L F ++   
Sbjct: 66  GIEVCRAIRE---FSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQL 122

Query: 119 QMQK 122
           +  +
Sbjct: 123 RRLE 126


>gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
 gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +++   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKP-IDLIITDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           D    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETEVVS 131


>gi|282899073|ref|ZP_06307054.1| henR [Cylindrospermopsis raciborskii CS-505]
 gi|281195989|gb|EFA70905.1| henR [Cylindrospermopsis raciborskii CS-505]
          Length = 377

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    ++ + + +     + V   ++  E          P  ++ D  M    
Sbjct: 1   MFQILVIDDDSSIQILLKRILEKQHYQVITTSNGREGILQAVASP-PALIICDWMMPELS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++  P  +  F   L         + G  +GA+ F+ KP  +  L+  +R   
Sbjct: 60  GLEVCNFIKNHPNLSSTFFILLTSLDSVSDRVKGLDSGADDFISKPIEQNELQARVRAGL 119

Query: 119 QMQKSKDENQ 128
           ++ +   + Q
Sbjct: 120 RLHQLNRDLQ 129


>gi|237715465|ref|ZP_04545946.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444174|gb|EEO49965.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1329

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +        +   + V  A +  EA +  E++ + + ++ D  M  +   
Sbjct: 1083 SILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSV-DLIISDIMMPLMDGV 1140

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + V  L  + + E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1141 ELCKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSN 1200

Query: 121  QKSKDE 126
            ++    
Sbjct: 1201 RERLRR 1206


>gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
 gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
          Length = 217

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL+D    + +  R+     G+ V+ A +  E  +       P+ +++D  M  +   
Sbjct: 4   RILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAH-RPHLILLDVMMPTMDGI 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  P   +  V +L    + E+ +AG  AGA+ ++ KP   + L   ++ + + 
Sbjct: 63  ETCRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRIQAILKR 122


>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 947

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+ +    +R+V   +     F V  A    +  E   +    + +++D  M  +  F
Sbjct: 828 RLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQGEY-DLILMDVQMPRMDGF 886

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +R+   G  + +  +      E       AG + ++ KP N +     +
Sbjct: 887 QATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKV 940


>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + K+      D  +   +A           +    + +++D ++  + 
Sbjct: 1   MKQILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSY-DLILLDLTLPTMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      +  +  L  + +    + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GIEICKKIRSQ---KNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  + G  V  A +   A E  EK    + +++D  M  +  
Sbjct: 2363 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2422

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +     +RQ      + +  +  +   +       AGA+ +L KP + + L   +R
Sbjct: 2423 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2478



 Score = 82.5 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      ++   +  + GF V  A+           E LP+ + +D  +  V    
Sbjct: 2095 LLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMA-NEYLPHAITLDIQLPVVDGWS 2153

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118
             +  +++      + V+ +           G   GA  +L KP ++E L     +L    
Sbjct: 2154 VLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHFL 2209

Query: 119  QMQKSK 124
            + +  +
Sbjct: 2210 ERKSRR 2215



 Score = 71.0 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 2    DSLLLVDSSHIVRKVGRHLF-NDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              LLL++   I R     L        V    +  EA    E E   + LVID  +  + 
Sbjct: 2214 RRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLE-EGEYDCLVIDLLLPDMD 2272

Query: 61   E--FIAHVRQMPLGTDVFVYY-----LLMEVD 85
                +  V+  P   D+ +       L  + +
Sbjct: 2273 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2304


>gi|254411882|ref|ZP_05025658.1| Adenylate and Guanylate cyclase catalytic domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196181604|gb|EDX76592.1| Adenylate and Guanylate cyclase catalytic domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 368

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     R + R +    G+ + EA+   +    C+K   P+ +++D  M  +  F 
Sbjct: 16  VLIVDDEETQRLLMRRVIEKEGYQILEASDGLDCLRLCKK-TSPDIILLDAMMPVMDGFT 74

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---- 117
               +++ P  + V V  +    D + +     AGA  ++ KP +   L   +R L    
Sbjct: 75  CCQQLKKNPKMSQVPVLMITALEDKKSVNQAFEAGATDYVTKPIHWPVLLQRVRRLILQS 134

Query: 118 ---PQMQKSKDENQFL 130
               Q+ +S++  + L
Sbjct: 135 QLYIQLIQSQERTERL 150


>gi|194288688|ref|YP_002004595.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193222523|emb|CAQ68526.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 247

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V       +  +   +   P  +V+D  M  V  
Sbjct: 7   TQILVVDDDPELRDLLREYLTQQGFAVSVMHDG-DGLQARLERERPALIVLDLMMPKVDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 66  LTALRNLRARNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125

Query: 122 KSK 124
            ++
Sbjct: 126 LAR 128


>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
 gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 ARYERLSGN 125


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+ D    +R +      + G+ V +A    EA +  E E + + LV+D  M     
Sbjct: 9   NKILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDV-DLLVLDIMMPKVNG 67

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VRQ     ++ +  L  + +    I G   GA+ ++ KPFN       ++ L +
Sbjct: 68  IEVCKKVRQN---KNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLR 124

Query: 120 M 120
            
Sbjct: 125 R 125


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLV+    + +V        GF V    +  EA      E  P  +V+D  +  +   
Sbjct: 4   TILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTE-QPALVVLDLMLPDLSGE 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     D+ V  L  +   E+ +AG   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  SICRELKE----CDIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVLKR 118

Query: 121 QKSKDENQFLD 131
             + +    L 
Sbjct: 119 TGATENGARLS 129


>gi|311104194|ref|YP_003977047.1| transcriptional regulator OmpR 1 [Achromobacter xylosoxidans A8]
 gi|310758883|gb|ADP14332.1| transcriptional regulatory protein OmpR 1 [Achromobacter
           xylosoxidans A8]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++     N  G+    A    +          P+ LV+D  + G   
Sbjct: 9   TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDATD-LSSRITRYAPDLLVLDRMLPGGDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    G D+ V  L    +    I G  AGA+ ++ KPF+   L   +  + + +
Sbjct: 68  ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 127

Query: 122 K 122
           +
Sbjct: 128 R 128


>gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+LLV+ +  + +  +       + VF       A     KE  P+ +++D  +  + 
Sbjct: 1   MTSILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKE-RPDLVILDWMLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+M       V  L    +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 60  GL-EVLRRMRQVAPTPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLRR 118

Query: 121 QKSKDENQFLD 131
            +  ++    D
Sbjct: 119 TELLEQMLRAD 129


>gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 223

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + +  R+     G+ VF A +  EA      E  P+ +++D  M  +   
Sbjct: 4   RILLVDDEVDILEFVRYNLVREGYEVFTAENGAEAL-KVAAECRPHLILLDMMMPVMDGA 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P+  D  V +L    +  + +AG   GA+ +L KP   + L   ++ + + 
Sbjct: 63  QTCRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAILKR 122

Query: 121 QKS 123
             +
Sbjct: 123 IDA 125


>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M     S+L+++    + ++ +      G++   A       E    E  P+++ +D  +
Sbjct: 1   MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYY-ETYPDFIFLDIML 59

Query: 57  EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R       + +  L  + + +  I G   GA+ +++KPF+   L   M
Sbjct: 60  PKIDGWELCQEIRWD--NKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARM 117

Query: 115 RELPQMQKSK-DENQFLD 131
           + + +      DE+Q + 
Sbjct: 118 KAVMRRADLLNDEDQVVS 135


>gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 240

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        G  V        A E        + +V+D  + G     
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGK-AMERALVAARIDLIVLDLMLPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              RQ+   +D+ V  L    D    + G   GA+ +L KPF+   L   ++ + +  +S
Sbjct: 66  LC-RQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124


>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF V  A            E  P+ +V+D  + G   
Sbjct: 3   RRVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEG-PDLVVLDVMLPGFDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    +   ++ G   GA+ +L KPF+   L   +  L +
Sbjct: 62  LEVCRRVQAQ---RAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLR 118

Query: 120 MQKSKDE 126
               + E
Sbjct: 119 RVDRERE 125


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+ D    +R + +       +MV  A     A +   +    + +++D  M  
Sbjct: 1   MKDIRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNY-SIVILDLMMPK 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +R     T+V +  L  +      I G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  VDGIEVCRKLR---DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKA 116

Query: 117 LPQM 120
           L + 
Sbjct: 117 LIRR 120


>gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
 gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++ +  +RK+        G+  FEA       +  +     + ++ D  M  + 
Sbjct: 1   MFNILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTH-IDLIICDIMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R      +  +  +  +   E    G   GA+ +++KP + E L   +  + 
Sbjct: 60  GYEFTETLR--DGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAIL 117

Query: 119 QMQK 122
           +  K
Sbjct: 118 RRSK 121


>gi|28867559|ref|NP_790178.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971031|ref|ZP_03399152.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|301385594|ref|ZP_07234012.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058822|ref|ZP_07250363.1| osmolarity response regulator [Pseudomonas syringae pv. tomato K40]
 gi|302132149|ref|ZP_07258139.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850794|gb|AAO53873.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924267|gb|EEB57841.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|330874561|gb|EGH08710.1| osmolarity response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965663|gb|EGH65923.1| osmolarity response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331014862|gb|EGH94918.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 246

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F+  G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFSSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + K+  +     G+    + +  +A E          +++D  + G+  F 
Sbjct: 6   ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQL-SMRSFELILLDIMLPGIDGFD 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  +  D+ +  L  + +    I G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRD 124

Query: 122 KSK 124
           + +
Sbjct: 125 RRQ 127


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 234

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +         + G+ V+ A++  E  E  E + L +  ++D  M  +   
Sbjct: 5   NVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTL-HLAIVDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  V  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKLRENY-DFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120


>gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  +        GF V    S   A     +    + +V+D  M G+   
Sbjct: 7   KILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIMMPGMSGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +       +  L    D    I G   GA+ +L KP N   L   +R + +  +
Sbjct: 67  -DVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125

Query: 123 S 123
           +
Sbjct: 126 N 126


>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++        GF   EA    EA E CEK    + +V+D  M  + 
Sbjct: 1   MTKILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNY-DLVVMDIMMPHLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A          +    L    +    I G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GFSAVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKR 119


>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
 gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF +++  +  +A    E E      ++D  +  +  F
Sbjct: 4   NILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESE-QLELAILDVMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  TICQKIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119


>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    + ++        GF V  A       ++       +  V+D  M  + 
Sbjct: 2   MHKILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAG-QFDLTVLDVMMPKLN 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L  + D  + + G  +GA+ ++ KP     L   +R L + 
Sbjct: 61  G-IETLRIIRQASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRR 119

Query: 121 QKSKD 125
            K   
Sbjct: 120 SKITK 124


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   ++     +   +  + V  A     A +  E     + +++D  +  + 
Sbjct: 1   MK-ILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVET-YEYDLILLDIVLPKLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G  V +  L           G  AGA+ +++KP + E L   +R L + 
Sbjct: 59  GISLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118



 Score =  111 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD      ++ + L   +G  +       +  E  EK + P+ L++D  M  +  
Sbjct: 374 TKILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEK-IQPDMLILDIEMPTMSG 432

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R    G +V + +L +  + E +      GA+ F+ KP     L   +    +
Sbjct: 433 IELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLE 492

Query: 120 MQKSKDENQF 129
             +     + 
Sbjct: 493 RVRLVKIMER 502



 Score = 83.7 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ D   I R+   +L    G+ V    S  +A      +  P+ +++D  M G+  + 
Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQH-PDVILLDLVMPGMNGWE 1122

Query: 64   AH--VRQMPLGTDVFVYYL----LMEVDFEKMIAGARAGA--NSFLLKPFNRETLRFAMR 115
                +++     D+ +         + +          G     +L KP     L  ++R
Sbjct: 1123 TMAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVKFADWLSKPVEETDLFNSLR 1182

Query: 116  ELP 118
            ++ 
Sbjct: 1183 KVV 1185



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVLE 61
             +L+++  H +  +   LF       F A +  EA    +K      ++     E     
Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQM 120
             +  ++Q      V V     +   +      + G   F  K     +     + +L Q 
Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTTQEFEQRVMDLLQR 1312


>gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A +  EA          +  +ID S+    
Sbjct: 1   MKRIFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAAL-AGNKFDLALIDISLPDGN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F     +     D+ V +L    D   ++ G   GA+ ++ KPF    L   +R   + 
Sbjct: 60  GFTVCT-ETKETQDIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRK 118


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 209

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 13  VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMP 70
           +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +        +R+  
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSVCKEIRK-- 57

Query: 71  LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
             +DV + +L  + +    + G R GA+ +++KPF+   L   M  + +    +++ + +
Sbjct: 58  -TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEI 116

Query: 131 D 131
            
Sbjct: 117 Q 117


>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    + V EA    EA    ++E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +++  +
Sbjct: 119 SRQASKK 125


>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
 gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++ +  +           G+ V  A                + +V+D  + G+   
Sbjct: 2   RILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G++  +  L      +  + G  +GA+ +LLKPF    L   +  + + 
Sbjct: 61  QVCERLR-RDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRR 119

Query: 121 QKSKDENQF 129
            +   + Q 
Sbjct: 120 TQGSRKRQL 128


>gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1370

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 12/142 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            + +L+V+    +RK          F + E T+  EA     K   P+ ++ D  M  +  
Sbjct: 1105 NRVLVVEDDEEIRKYICRELAS-DFHMSECTNGKEALAMILK-KEPDLIISDIMMPEMDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF-AM---- 114
                  ++Q      + +  L  +   E  + G   GA+++++KPF+ E LR  A+    
Sbjct: 1163 LTLCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKTAINLIK 1222

Query: 115  -RELPQM--QKSKDENQFLDAI 133
             RE+ +     S+ + Q L  +
Sbjct: 1223 SREVLRNSFSGSQMQEQKLKKL 1244


>gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  V  +    F   GF         +     ++E   + L++D  +  + 
Sbjct: 1   MK-ILMIEDNQSVCTMTEMFFQREGFQAEFVHDGQDGLNRFKQEDDWDLLILDIMLPSMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VRQ+   +DV +  L  +      + G   GA+ ++ KPF+  TL   ++ + 
Sbjct: 60  GLTICQKVRQI---SDVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARIKAVK 116

Query: 119 QM---QKSKDENQFLD 131
           +       + E++ L 
Sbjct: 117 RRFTQTTIQKEDERLA 132


>gi|148652131|ref|YP_001279224.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571215|gb|ABQ93274.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 223

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL D    +  + +    + G     A    +     + +   + +V+D  M  + 
Sbjct: 1   MTHILLGDDDKELTDLLQEYLTNHGIRCDCAYDGEQVLNKIKSQPY-DLIVLDIMMPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+P  T   V  L  + D    I G   GA+ ++ KP N   L   +  + + 
Sbjct: 60  GL-NVLRQLPTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIKR 118

Query: 121 QKSKD------ENQFLD 131
              +       E++ L 
Sbjct: 119 TTMQQSDIVPLEHERLQ 135


>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+V+    + K+  +     G+    + +  +A E   K    + +++D  + G+  F 
Sbjct: 6   LLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAK-RRFDLVLLDLMLPGIDGFD 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               +RQ  L  D+ +  L  + +    + G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKRD 124

Query: 120 MQKSKDENQFLDA 132
            ++S    + L A
Sbjct: 125 RRQSAQHQEVLSA 137


>gi|117925744|ref|YP_866361.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
 gi|117609500|gb|ABK44955.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
          Length = 376

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLVD      ++     +   F +  A     A E  + +  P+ +++D  M G+   
Sbjct: 13  RVLLVDDVKENLQILMESLSSE-FAITVARDGVRALELAKTQPRPDVILLDVMMPGMDGY 71

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++      E    G   GA  +++KPF+   +   +R   ++
Sbjct: 72  TVCRQLKDWVETRDIPVIFITAMDGEEDQFRGLNLGAVDYIIKPFSPPLVSVRVRNQVEL 131

Query: 121 QKSKDENQFLDAI 133
           ++ +D    LDA+
Sbjct: 132 KRHRD---MLDAL 141


>gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LL++    VR+         G       +  +  E       P+ +++D  + G+ 
Sbjct: 1   MTRVLLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASP-PDLVLLDLMLPGMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+    + V V  L    D   ++ G  AGA+ +++KP + E +   MR + 
Sbjct: 60  GLEVCRRIRE---TSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVM 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +         G+      +     E    E   + +++D  +    
Sbjct: 1   MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSED-FDAILLDLMLPEIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R+  +     +  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GIEVCRRIRREKI---TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116

Query: 119 QMQKSKDEN 127
           +    ++++
Sbjct: 117 RRVDLEEQD 125


>gi|300783817|ref|YP_003764108.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793331|gb|ADJ43706.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + +  R      G+ V  A     A +    E  P+ +V+D  +  +   
Sbjct: 7   TVLVVDDEPQIVRALRINLTARGYKVITAHDGTAALKAV-AETKPDVVVLDLGLPDLDG- 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +   T V +  L    D    +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 65  TEVIAGLRGWTTVPIIVLSARGDSADKVEALDAGADDYVTKPFGMDELLARLRAAVRR 122


>gi|300726408|ref|ZP_07059858.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella bryantii B14]
 gi|299776308|gb|EFI72868.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella bryantii B14]
          Length = 937

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D ++ +R+  R L     + V EA           K+ +P+ ++ D  M  +    
Sbjct: 667 ILIIDDNNDMREYLRILLKAQ-YHVLEAVDGKIGLSMARKQ-VPDIIICDIMMPVMDGLE 724

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +++  + + + V  L      E+ + G + GA+S++ KPF  + L   +  L + +
Sbjct: 725 FTRALKKDTVTSHIPVILLSARSLDEQKVQGYQEGADSYITKPFQADVLIARIDNLLKSR 784

Query: 122 K 122
           +
Sbjct: 785 E 785


>gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 224

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    VR          G  V    +  EA +       P  +++D  + G  
Sbjct: 1   MAGILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRT-RRPEIVILDVMLPGID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R++     + V  L    D   ++ G  AGA+ +++KP     L   +R + 
Sbjct: 60  GIEVCRRIRKIDS---LPVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAIL 116

Query: 119 QMQKSKDENQF 129
           +  +S   ++ 
Sbjct: 117 RRVESVPADRL 127


>gi|284035483|ref|YP_003385413.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283814776|gb|ADB36614.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1388

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LLV+    +R   + LF +  + V EA    +  +   +  LP+ ++ D +M  +  F 
Sbjct: 1133 VLLVEDQDDIRTYLKGLFVEK-YDVMEAADGAQGWDIATR-TLPDLIIADVAMPIMDGFA 1190

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                ++  P  + + V  L  +   +  + G   GA+ ++ KPF+   L+  +  L    
Sbjct: 1191 MTHRLKSDPRTSHIPVIMLTAKGTVDSQLTGLETGADDYVSKPFHPILLQARVSNLLAVR 1250

Query: 121  QKSKDENQFLDAI 133
            ++ K +   L  +
Sbjct: 1251 EQLKAKYNRLVTL 1263


>gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
 gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +    + G+ V  A S  EA +        + +++D  M  +  
Sbjct: 4   TRILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSY--HLILLDVMMGEISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  FKMANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLR 121

Query: 120 MQKSKDENQ 128
              + +  +
Sbjct: 122 RTATAETER 130


>gi|119493450|ref|ZP_01624119.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
 gi|119452694|gb|EAW33873.1| NarL subfamily protein [Lyngbya sp. PCC 8106]
          Length = 215

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             L+LVD    +  + R      G+ V  A +  +A E  E + LP+ ++ D  M  +  
Sbjct: 10  KQLMLVDDDPNLVLLVRDYLEFRGYEVSTAENGLKALELLELQ-LPDLIICDIMMPEMDG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R+ P    + V +L  +   +  + G   GA+ +++KPF  E L   +    +
Sbjct: 69  YSLVKVIREDPRTGWIPVLFLSAKGLSQDKVKGLNTGADVYIVKPFEPEELVAQVESSLR 128

Query: 120 M 120
            
Sbjct: 129 Q 129


>gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493]
 gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 245

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        GF    A    E +    K+ + + +++D  M G     
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAV-DLVILDIMMPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              RQM   + + +  L    +    I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 66  LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123


>gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 234

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+ D    +  V    F D  F V+ A    EA +   KE  P+ +V+D  M G+  
Sbjct: 4   NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRL-KEDHPDIMVLDIMMPGIDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R      D+ + +L  + D    + G   GA+ +++KPF+   L   ++   + +
Sbjct: 63  FEVCRRARQFT-DIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRR 121

Query: 122 KSK 124
           + +
Sbjct: 122 RGE 124


>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + K+      + G+ +  A+   EA E   K    + +++D  M  +   
Sbjct: 5   TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEIL-KNHKVDLIILDVMMPQMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      +  +  L  +      IAG   GA+ ++ KPF+   L   ++   +  K
Sbjct: 64  QACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYK 122

Query: 123 S------KDENQ 128
                  +DEN+
Sbjct: 123 QLNNQSVRDENE 134


>gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00]
 gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00]
 gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +K+   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  +    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETELIS 131


>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|157827084|ref|YP_001496148.1| response regulator PleD [Rickettsia bellii OSU 85-389]
 gi|157802388|gb|ABV79111.1| response regulator PleD [Rickettsia bellii OSU 85-389]
          Length = 457

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      K+      +  + VF+A+S  EA    +KE + + +++D  M  +  F
Sbjct: 4   NILIVDDIETNIKLLEAKLLNEYYTVFKASSGKEALNILKKEKV-DIVLLDVMMPEMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L +M
Sbjct: 63  EVCKKIKSDPETTHIPVVMVTALSDVDDRVKGLEAGADEFLTKPINDNALFIRIKSLSRM 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  ++
Sbjct: 123 KSLIDELKIRNS 134



 Score = 54.0 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60
             +LL++   +  K  + +       V   ++  E       E  P+ +VI  ++E    
Sbjct: 153 KKILLINDDVVQAKNIKQMLLKITSNVKVISNSEE--TDTINEYKPDLIVISSTLENEDP 210

Query: 61  -EFIAHVRQMPLGTDVFVYYLLMEVDF-------EKMIAGARAGANSFLLKPFNRETLRF 112
               A +R  P  + V +  L +  D        + ++ G   G N + + P +   L  
Sbjct: 211 LRVGAILRGKPEISGV-ILILQIYEDENGNENQMQLVMKGFELGINDYFVYPIDESELAA 269

Query: 113 AMRELPQMQKSKDENQ 128
            ++   + ++ +D  +
Sbjct: 270 RIKTQLRRKQYQDNLR 285


>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 118 RRIEVHEE 125


>gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099]
 gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099]
 gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++V+    +  + R+     G+ V   T   EA E   +E +P+ LV+D  +     +
Sbjct: 5   RIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEA-EIRLQENVPDLLVLDWMVPAVSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +    + G   GA+ +L+KPF+       ++ L + 
Sbjct: 64  ELCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRR 123

Query: 121 QKSK 124
            K +
Sbjct: 124 AKPE 127


>gi|332975405|gb|EGK12298.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  +       F   G+ +  A +          E   + +++D  + G+ 
Sbjct: 1   MHKILIIEDNPDIVANIYAFFEPKGYELDNAHNGPSGLSLL-AENQYDVILLDVMLPGMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  L     V  L         +AG  +GAN +L+KPF+   L   ++ L 
Sbjct: 60  GTELCRTLRE-KLHIKTPVLMLTARDTISDKVAGFDSGANDYLVKPFSLVELEVRVKALL 118

Query: 119 QMQK 122
           +  +
Sbjct: 119 RRHQ 122


>gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
 gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
          Length = 225

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +    + K  + L     F V    +  +A ++       + +V+D  M     +
Sbjct: 2   RILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDY-DVIVLDIMMPKKNGM 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E ++ +R    G  V V  L    + E  +AG  AGA+ +L KPF        ++ L + 
Sbjct: 61  EVLSQIR--SEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARR 118


>gi|322411718|gb|EFY02626.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    ++KV     +  G+ V  A++  EA  + E     + +V+D  M  + 
Sbjct: 1   MFAILVVEDDWSLQKVISTKLSQEGYHVHVASNGQEALNYLE-NTHIDLMVVDIMMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R    G  + +  +  +  FE +    + G + +L+KP     L   ++ L 
Sbjct: 60  GYSLVKLLR--ESGQQLPILMMTAKSQFESLEEAFQLGVDDYLVKPIILSELVLRIKALL 117

Query: 119 QMQKSKDENQF 129
           +  K + E + 
Sbjct: 118 RRVKLEHEQEL 128


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V  A +  E  E    E   + +++D  +  +  
Sbjct: 3   KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQ 120

Query: 122 KSKD 125
             + 
Sbjct: 121 DIEA 124


>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  + +A S  EA    +   + + +V+D  M G+  
Sbjct: 16  SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 74

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 75  FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 131

Query: 120 MQKSKDE 126
                 E
Sbjct: 132 RTYQSKE 138


>gi|209525668|ref|ZP_03274205.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209493837|gb|EDZ94155.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 592

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD       +   +    G+ V +A +   A     K + P+ +++D  M G+    
Sbjct: 8   ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMAL-MAVKTVQPDLILLDIMMPGMDGYQ 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V +L    D    +    AG   ++ KPF  E +   ++    ++
Sbjct: 67  VCKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHLMLK 126

Query: 122 KSKDE----NQFLDA 132
           +++ +    N  L+A
Sbjct: 127 EAEKKILELNTELEA 141


>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
 gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+V+    +  + +      G+ V  A +  +A +F   +   + +++D  M G 
Sbjct: 1   MTHRILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFV--DDSLDLVILDVMMPGI 58

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R     ++V + +L  +        G  AG + ++ KPF++E L   +   
Sbjct: 59  SGIETCQQMRAS---SNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQ 115

Query: 118 PQMQKSKDENQFLDA 132
            +      E +  + 
Sbjct: 116 LRRYTVYQEKKEQEE 130


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    E+    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRAKSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QMQKSKDE 126
           +     +E
Sbjct: 117 RRGSDSEE 124


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +      L    GF    A     A     +    + +++D  + G+ 
Sbjct: 1   MTRILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNE-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +   + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKELRSV---STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1347

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+V+ +  +++  R      G+ V  A    E  +  EKE   + ++ D  M  +  
Sbjct: 1096 QTILIVEDNPDMQEFIRKNLI-LGYNVLLANDGIEGIKLLEKEE-IDLIISDIMMPNMDG 1153

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              F   V+   L   + +  L  + +    I     GA++++ KPF+   L   +R L +
Sbjct: 1154 IEFCNKVKNSLLWNHIPLIMLTAKTNIASKIEALETGADAYIEKPFSISFLSVQIRNLLE 1213

Query: 120  MQKS 123
             ++S
Sbjct: 1214 SRRS 1217


>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 549

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +              GF V          E  E E  P+ +++D +M  +  F
Sbjct: 9   TILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVEYEP-PDLILLDVNMPVIDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P+  D+ + ++    D    I G   GA  ++ KPF +E +   +R   ++
Sbjct: 68  ETCKKLKNNPISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQEEVLARVRLHLKL 127

Query: 121 ----QKSKDENQFLDA 132
               +   ++N +L  
Sbjct: 128 YFLTKTLAEQNAYLQE 143



 Score =  101 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD +   R V  ++    GF V  A +  +  +     + P+ ++ D  M     
Sbjct: 425 RKLLVVDDNKENRLVLLNMLEPLGFEVVTAENGQQGLDVAIA-IRPDLILTDLFMPVKTA 483

Query: 62  FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
           F     +R++P   +V +  L               G   FL KP +++
Sbjct: 484 FTMVPEMREIPDLKNVPIIALSARTFEIVQKQSQMLGCEGFLPKPIDQD 532


>gi|302340322|ref|YP_003805528.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301637507|gb|ADK82934.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 374

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   +    G+ +  A S  EA E   +    + +++D  M G   +
Sbjct: 8   NILIVDDTRNNLFILSSILRKKGYRIAAALSGLEAIELL-QHKQFDLILLDIRMPGINGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   ++ V ++    D + +     AG   ++LKPF    L   +     +
Sbjct: 67  ETCKRIKATPETAEIPVLFISAIDDHDLIAEAFAAGGRDYILKPFEPVELIARIETQLDI 126

Query: 121 QKSKDENQFLDA 132
           Q+ +   + ++A
Sbjct: 127 QRGRRLLEQINA 138


>gi|302037343|ref|YP_003797665.1| sigma-54 dependent transcriptional regulator [Candidatus Nitrospira
           defluvii]
 gi|300605407|emb|CBK41740.1| Sigma-54 dependent transcriptional regulator [Candidatus Nitrospira
           defluvii]
          Length = 448

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 1   MDSL-LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  + L+ D    + ++ +  F   G+ V  A+    A +  E+   P+ LV+D  M   
Sbjct: 1   MKPIVLVADDDPSILEILKLGFRTKGYEVITASDGKSAIQAIEQN-RPDLLVLDIEMPHL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E + H+R+      + V  +         +   + GA  F+ KPF  E L   +++ 
Sbjct: 60  TGIEVLRHLRKD--WPTLPVVIMTAHGTISLAVEAMKEGATEFITKPFEMEQLLLVIQKA 117

Query: 118 PQMQKSKDENQFL 130
            + +  + E + L
Sbjct: 118 LEREGLRREVEVL 130


>gi|282899741|ref|ZP_06307704.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195356|gb|EFA70290.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 368

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD       + + L    G+ +   +    A +   +   P+ +++D  M  +   
Sbjct: 11  RILVVDDRRDNLILVQTLLESEGYAIDSVSDGATALQKTVQSP-PDLILLDVMMPEMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  +    D   ++ G  AGA+ F+ KPF+   L   +R L ++
Sbjct: 70  EVTRTIRSYTNIDYIPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLRL 128

Query: 121 QKSKDENQFLD 131
           + S DE Q + 
Sbjct: 129 KYSIDEQQKMS 139


>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 234

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K+      + G+ V +A     A E   ++   + +++D  + G+  
Sbjct: 3   KRILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALE-ITEQDEVDLVILDVMLPGLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++         +  L  +      I G   GA+ +++KPFN   L   ++ L +  
Sbjct: 62  ISVCMKIRES-KTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRS 120

Query: 122 KSKDE 126
               +
Sbjct: 121 SYTAQ 125


>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + K+      + G+ +  A+   EA E  +   + + +++D  M  +   
Sbjct: 5   TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKV-DLIILDVMMPQMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      +  +  L  +      IAG   GA+ ++ KPF+   L   ++   +  K
Sbjct: 64  QACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYK 122

Query: 123 S------KDENQ 128
                  +DEN+
Sbjct: 123 QLNNQSVRDENE 134


>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|298482890|ref|ZP_07001072.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|298270862|gb|EFI12441.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1336

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1128

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1129 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1188

Query: 120  MQKSKD 125
             +    
Sbjct: 1189 NRALLR 1194


>gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++VD    + K          + V +A +  +A E  EK    +  ++D  MEG+ 
Sbjct: 1   MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNK-IDLFLVDIMMEGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +   + ++  +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLELTQKIREV-SNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRR 118

Query: 121 QKSKDENQF 129
            +   +N  
Sbjct: 119 LELSKDNSL 127


>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   L    G+ V    +          E  P+ +++D  + G+   
Sbjct: 2   RILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEH-PDLVLLDVMLPGLDGV 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  +  + D   +IAG  AGA+ ++ KPF    L   ++   + 
Sbjct: 61  SVCRLLREE---SDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRR 117

Query: 121 QKSKDE 126
           Q+++ E
Sbjct: 118 QENESE 123


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +  + +      G  V  A +  E  E  ++  +P+ +V+D  M    
Sbjct: 1   MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE--MPDLIVLDIMMPDID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R         + +L  +      I G   G + +++KPF+ + L   +    
Sbjct: 59  GYEVCRKIR---DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHL 115

Query: 119 QMQK 122
           + +K
Sbjct: 116 RREK 119


>gi|153870359|ref|ZP_01999776.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152073174|gb|EDN70223.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 301

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD      +V  ++    G+    A     A  F +K   P+ +++D  M G   +E
Sbjct: 10  VLIVDDHPQNLQVLGNMLKANGYKPAAAQDGTIALAFVQKTH-PDLILLDIMMPGIDGIE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q      + V ++    D    +   +AG   ++ KPF +E +   ++    ++
Sbjct: 69  VCKQLKQQEHTRKIPVIFITALSDTRDKLKAFKAGGVDYITKPFVQEEVIARIKVHIALK 128

Query: 122 KSKDENQFLD 131
           K+ ++ + + 
Sbjct: 129 KALEKLEQMS 138


>gi|149277598|ref|ZP_01883739.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
 gi|149231831|gb|EDM37209.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
          Length = 1363

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 12/141 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+V+    +R + R++  +  ++++EA +   A +F +K  +P+ ++ D  M  +  
Sbjct: 1106 QSVLIVEDEPELRFLIRNVLKEH-YIIYEAGNGRAALQFLQK-TVPSLIISDVMMPDMDG 1163

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118
                  V+Q P    +    L      +    G   GA++++ KPF    L+  +R+L  
Sbjct: 1164 LELCRAVKQTPALAQIPFVILSARGTEDHKTEGYEVGADAYIPKPFQINYLQVRIRKLLD 1223

Query: 119  ---QMQKSKDE----NQFLDA 132
               +MQ    +    NQF+DA
Sbjct: 1224 YQERMQHLIKDQHITNQFMDA 1244


>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
          Length = 225

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A E   +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAF-RETKPDLVLLDLMLPGA 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRAR 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LRRTE 121


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +     +     GF     T   EA    +     + +V+D  +  +  F
Sbjct: 2   RILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGH-DLVVLDVGLPDISGF 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV V +L    D    I G   GA+ ++ KPF+   +   +R + + 
Sbjct: 61  DVCRLLRRN---SDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRR 117

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 118 SRPELRN 124


>gi|253701161|ref|YP_003022350.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251776011|gb|ACT18592.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 396

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +   +  + G+ VF A S  E  E  +KE  P  +++D  M  +   
Sbjct: 11  RVLIVDDEKVILDLTAIILKNRGYQVFTALSALEGLETIDKE-RPELVLLDYMMPNMDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A         D +V     +   E  +   +AGA+ ++LKPFN + L   +  + +++ 
Sbjct: 70  TALKEIRRSYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLRG 129

Query: 123 SKDENQFL 130
            + +N+ L
Sbjct: 130 IELQNRAL 137


>gi|225628912|ref|ZP_03786946.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo]
 gi|260167230|ref|ZP_05754041.1| Probable transcriptional regulator ycf27 [Brucella sp. F5/99]
 gi|261756634|ref|ZP_06000343.1| response regulator receiver [Brucella sp. F5/99]
 gi|225616758|gb|EEH13806.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo]
 gi|261736618|gb|EEY24614.1| response regulator receiver [Brucella sp. F5/99]
          Length = 238

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLNRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A     +E  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-REAKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1287

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            ++  D +  +R     L     + V        A     ++  P+ ++ D  M      
Sbjct: 656 RIVCADDNADMRSYIGQLLEPL-YEVEIVGDGRAALASIHRQ-RPDLVLADVMMPVLDGF 713

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R       + V  L      E  + G RAGA+ +L+KPF+   L   +  L Q+
Sbjct: 714 ELLHALRSDETTRAIPVIMLSARAGQEAQVEGLRAGADDYLVKPFSARELLARIASLLQL 773

Query: 121 QKSKDE 126
              +++
Sbjct: 774 VSVREQ 779



 Score =  106 bits (267), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD +         L    G  V  A     A         P  +++D  + G+   
Sbjct: 1168 RILVVDDNIDAADTLAMLLRLLGAEVEIARDGPGALAM-HAAFRPEVVLLDIGLPGMDGL 1226

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                 +R       V +  L      E +     AG +  L+KP + +TL   +
Sbjct: 1227 EVARRIRAEHGRDQVVLIALTGWGQEEDLRRSREAGMDHHLVKPVSFDTLERLL 1280


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+V+    + K+  +     G+    + +  +A +   +    + +++D  + G+  F 
Sbjct: 6   LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSR-RSFDLVLLDVMLPGIDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  +  D+ +  L  + +    I G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRD 124

Query: 122 KSK 124
           + +
Sbjct: 125 RRQ 127


>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G++  +A++  EA E  +   + + +++D  M  +   
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNV-HLIILDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++       + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +    + ++        G+ V       EA  + E     +  ++D  M      
Sbjct: 2   RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADY-DAAILDIMMPRRNGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R +  G +  V +L         +AG   GA+ +L+KPF+ + L   +R L + 
Sbjct: 61  EVLKRLRSL--GKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRK 118

Query: 121 QKSKD 125
           + +  
Sbjct: 119 RSTHR 123


>gi|224026502|ref|ZP_03644868.1| hypothetical protein BACCOPRO_03259 [Bacteroides coprophilus DSM
            18228]
 gi|224019738|gb|EEF77736.1| hypothetical protein BACCOPRO_03259 [Bacteroides coprophilus DSM
            18228]
          Length = 1330

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R       ++  + V  A +  EA E  + +  P+ ++ D  M  +    
Sbjct: 1076 ILIVEDNISLRAFLMQSLSET-YRVEGAGNGQEALELIQNQ-QPDLVLSDVMMPIMDGQE 1133

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++     + + +  L    D E ++ G    A+ +++KPF+   L   +  + + +
Sbjct: 1134 LCKNLKSNIETSHIPIILLTALGDKEYILKGLGNKADLYIVKPFDLTVLLANISNVLENR 1193

Query: 122  KSKDE 126
            +    
Sbjct: 1194 ELIRR 1198


>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
 gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +      G+ V  A +  EA +   ++ +   ++ D  M G+   
Sbjct: 15  KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLII-DIMMPGMDGL 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G   GA+ ++ KPF  + L   ++   + 
Sbjct: 74  SATMKIRES-KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRR 130


>gi|150002641|ref|YP_001297385.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931065|gb|ABR37763.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1349

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1090 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1147

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1148 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTTANLIRS 1207

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1208 RERLRN 1213


>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +           G+ V +A            E  P+ +V+D  +     
Sbjct: 6   QRILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDE-APDLVVLDIMLPELNG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +  +RQ   G D  V  L  +      I G   GA+ +++KPF  + L   ++ + +
Sbjct: 65  FDVLKELRQR--GRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLR 122

Query: 120 MQK 122
            + 
Sbjct: 123 RRH 125


>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yrkP
 gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
 gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  +        G+ V  A     A +        + +++D  M G   +
Sbjct: 4   RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV--NDSLDLVILDIMMPGISGI 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   H+R+    ++V + +L           G  AG + ++ KPF+ E L   +    + 
Sbjct: 62  ETCQHIRKS---SNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118

Query: 121 QKSKDENQFLDA 132
                E +  + 
Sbjct: 119 YTIYQEKKEQEE 130


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    VR+  R      G+ V  A+   EA E    E  P+  ++D  M     L
Sbjct: 2   KILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASE-RPDLAILDVMMPRRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G D+ +  L       + +AG  AGA+ +L KPF  E L    R L + 
Sbjct: 61  EVCRELRSH--GDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118


>gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1347

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1095 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1152

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1153 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1212

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1213 QQEKRKQE 1220


>gi|293410584|ref|ZP_06654160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           B354]
 gi|291471052|gb|EFF13536.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           B354]
          Length = 461

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF  + A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETYCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+++    +  + +      G+ +  A    +  +   +E + + +++D  +  +
Sbjct: 1   MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENV-DLILLDIMLPSM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F    H+R+      V +  +  + +    I G   GA+ ++ KPF+   L   ++  
Sbjct: 60  NGFDVCRHIREKSS---VPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKAN 116

Query: 118 PQM 120
            + 
Sbjct: 117 IRR 119


>gi|237797944|ref|ZP_04586405.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020795|gb|EGI00852.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 246

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
 gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
          Length = 233

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V  A           ++   + +++D  + G+ 
Sbjct: 1   MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMA-RQDQYDLILLDIMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R++    +V V  +    +   ++ G   GA+ +++KPFN   L   +R     
Sbjct: 60  GFAVC-RELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIAR 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 719

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL + +   +    H   + GF V  A +  EA +  +     + +++D  M  +   
Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILMDVQMPEMDGL 658

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  +    G ++ +  L               G +++  KP N + L   + +L    K
Sbjct: 659 EATKKIREQGNEIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQIIGKLVPRTK 718

Query: 123 S 123
            
Sbjct: 719 Q 719


>gi|172039201|ref|YP_001805702.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
 gi|171700655|gb|ACB53636.1| putative two-component response regulator [Cyanothece sp. ATCC
           51142]
          Length = 608

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 3/133 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD +    +V   +  + G+ V +AT    A     K L P+ +++D  M  +  
Sbjct: 24  KDILIVDDTIENLRVLSSILIEQGYSVRKATGGKMAL-KVVKTLPPDLIMLDIMMGDMSG 82

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +++ P   D+ V +L    D    +     G   ++ KPF  E +   ++    
Sbjct: 83  YEVCQKLKENPDTADIPVIFLSALDDVFDKVKAFEMGGVDYISKPFQMEEVLVRVKNQLA 142

Query: 120 MQKSKDENQFLDA 132
           ++ ++ E   L+A
Sbjct: 143 LRTAQKEVYQLNA 155


>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R +        G+   +A    EA +  E     + +++D  M  +   
Sbjct: 5   SILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIE-NTDVDIVILDVMMPNLNGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++   +  ++ +  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 64  ETCLKIREM-KEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRR 120


>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
 gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
          Length = 242

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG-- 58
            +LLV+    +R       +  GF V        A +F   +     + +++D  + G  
Sbjct: 13  RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         +  L  + +    + G   GA+ +L KPF    L    R L 
Sbjct: 73  GLELCRKIRNDEDY--TPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALI 130

Query: 119 QMQKSKDEN 127
           +  K   +N
Sbjct: 131 RRSKRNKKN 139


>gi|66043528|ref|YP_233369.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|302188958|ref|ZP_07265631.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           642]
 gi|63254235|gb|AAY35331.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330901510|gb|EGH32929.1| osmolarity response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330943280|gb|EGH45670.1| osmolarity response regulator [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330972160|gb|EGH72226.1| osmolarity response regulator [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330977296|gb|EGH77250.1| osmolarity response regulator [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 246

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
          Length = 1155

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+VD +  +R     +    G+ V+ A +  E      +EL PN +V D  M     L
Sbjct: 798 SILVVDDNPDLRTYVSDILRRSGYQVYTARNGYEGFSKV-QELTPNLIVTDLMMPLVTGL 856

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  VR         +  L  +VD E  I     GA+++L KPFN   L   +R L  +
Sbjct: 857 EMIRMVRNDEKVKGTPIILLTAKVDEETRIESTEHGADAYLAKPFNDRELLAEVRNLLAL 916

Query: 121 QKSKDENQFLD 131
           +++  E + L+
Sbjct: 917 KEN--EKRVLE 925



 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       +    F    + V  A S   A +   +E     ++ D+ M  +   
Sbjct: 10  KILVVDDEPDNLDLLYRTF-YRDYKVLRAISGPAALDLLAQEGEIAVIISDQRMPIMSGT 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP 118
                      D+    L    D E ++    AG    ++ KP+  E L+  +R+  
Sbjct: 69  EFLSLTATQYPDIIRIILTGYTDVEDLVEAINAGKVFKYVTKPWEAEELKAVVRQAL 125


>gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
 gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +R     L  D G+   +A++  EA         P+ +++D  M G+  +
Sbjct: 2   KVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMH-QPDLVLLDIMMPGMDGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   L   V V ++  + +    + G   GA+ ++ KPF    +   +  + +   
Sbjct: 61  AVCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRRCN 120

Query: 123 SKDENQFLD 131
                + ++
Sbjct: 121 KALPAEQIE 129


>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 222

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ++ G+MV  A     A    ++   P+ +++D  M G+  F 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALLRIQR-RRPDLILLDAMMPGMDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P  +++ V ++    D E ++ G  AGA  ++ KP     +   +    +  
Sbjct: 72  TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVTKPIQCNEMIARVASHLRTA 131

Query: 122 KSKDENQ 128
           ++    +
Sbjct: 132 RTLQSAR 138


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A E    +   + +V+D  + G+ 
Sbjct: 1   MTRVLLAEDDASISEPLARALRREGYEVEVREDGPGALE-AGMQGGVDLVVLDLGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|255035253|ref|YP_003085874.1| multi-sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254948009|gb|ACT92709.1| multi-sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 1118

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ D +  +R+  + L     +    A++  EA E   +   P  ++ D  M  +    
Sbjct: 625 VLIADDNADMRQHIQSLLGSE-YDTLTASNGVEALEIIRRH-RPALVLSDVMMPEMDGIA 682

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  V+  P+     +  +      E  I G   GA+ +++KPF+   L    +   +M 
Sbjct: 683 LLKAVKNDPVIAQTPIILITARAGEESRIEGIEIGADDYIVKPFSSRELIVRAQAQMRMS 742

Query: 122 KSKDENQ 128
            ++ + +
Sbjct: 743 SARSKIE 749


>gi|226330037|ref|ZP_03805555.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
 gi|225200832|gb|EEG83186.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + +  R      GF V+EA               P+ +++D  +      
Sbjct: 5   NILIIEDEKEILRFVRLALESEGFRVYEANECQRGL-IEAASRKPDLVILDLGLPDKDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++     +   +  L      +  +    AGA+ +L KPF    L   +R   + 
Sbjct: 64  C-FIQDFRQWSSTPIIVLSARDSEQDKVKALDAGADDYLTKPFGISELLARIRASLRR 120


>gi|224538239|ref|ZP_03678778.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520171|gb|EEF89276.1| hypothetical protein BACCELL_03130 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1490

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F    + + EA    +      K  LP+ ++ D  M G      
Sbjct: 1223 LLVEDNSELRLFLRSIFASE-YRIVEAVDGMQGWSKALK-FLPDIIISDVMMPGKDGITM 1280

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  ++ L  Q +
Sbjct: 1281 TRELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVKNLLTQRR 1340

Query: 122  KSK 124
            K +
Sbjct: 1341 KLQ 1343


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    + +  +  F   G+ V          +    E   + +++D  + G+
Sbjct: 1   MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEAL-EGDYDLVLLDIMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +   ++++   +D+ V  L  + + +  + G   GA+ ++ KPF+ E L   +R   +
Sbjct: 60  DGY-EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALR 118

Query: 120 MQK 122
            + 
Sbjct: 119 KRN 121


>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
           punctiforme PCC 73102]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD     R          G+ V  A    EA    + E  P+ +V D  M  +   
Sbjct: 4   TILVVDDDLGTRLSVSDYLELSGYSVITANDGQEALFMVD-EYNPDLIVTDIIMPQMNGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  VRQ  +   + V  L      ++ I G ++G + +L KPF  E L  A+R L + 
Sbjct: 63  ELVRRVRQQAMFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLLER 122

Query: 121 QK 122
            +
Sbjct: 123 SQ 124


>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A      +  P+ +++D  + G 
Sbjct: 5   MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAF-HDTKPDLVLLDLMLPGR 63

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V V  L  + D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 64  DGIEVCRLIRAESG---VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRAR 120

Query: 118 PQMQKSKDENQF 129
            +  +     Q 
Sbjct: 121 LRRSEEPAPEQL 132


>gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 10  MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + + G   G + +L KPF+   L   +R L + 
Sbjct: 69  GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128

Query: 121 QK 122
            K
Sbjct: 129 YK 130


>gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 13  MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + + G   G + +L KPF+   L   +R L + 
Sbjct: 72  GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 131

Query: 121 QK 122
            K
Sbjct: 132 YK 133


>gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1166

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    G  V  A +  +  +   +    + +++D  M  +  
Sbjct: 1037 RTVLVVDDDARNLFALSGILELHGIQVLHAENGRKGIDALAEHPDIDLILMDVMMPEMDG 1096

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R+MP   D+ +  +  +           AGA+ ++ KP + + L   +R   
Sbjct: 1097 YAATAEIRRMPAHADLPIVTVTAKAMPGDREKSLAAGASDYVTKPVDADDLIACVRRWL 1155


>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
 gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFND-FGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           ++LLVD    VR+  +    D     V  A +  +A +  +    P+ ++ D  M     
Sbjct: 6   NILLVDDEPGVREAVQAYLEDDEALTVTTAENATKAWDVLQT-FTPDLVISDIMMPQVDG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +F+  +R+ P    + V +L         I G +AG +++L KPF  E L   ++ L  
Sbjct: 65  YQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKPFEPEELEAIVKNLLT 124

Query: 120 MQKSKDENQ 128
            + +  E Q
Sbjct: 125 REAAIAEQQ 133


>gi|162450210|ref|YP_001612577.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161160792|emb|CAN92097.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 561

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +     +        GF V  A     A     +E +P+ +++D  M+G+  F
Sbjct: 8   TILIVDDNPRNLGLLSDTLTGSGFEVAVAVDGARAL-RLAREGMPDLILLDVKMDGMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFE-KMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++  P    + V ++    D     + G   GA  +L KPF  E L   +R   +
Sbjct: 67  ETCRRLKGDPATAAIPVIFMTASTDLSADRVKGLNLGAVDYLAKPFLDEELLARVRVHTK 126

Query: 120 MQKS 123
           +++ 
Sbjct: 127 LRRL 130


>gi|197121525|ref|YP_002133476.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196171374|gb|ACG72347.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. K]
          Length = 501

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R+  R +    G+ V EA S  +  E  + E + +  V D  + G+   
Sbjct: 29  SILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPV-DLGVFDIRLPGMDGL 87

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L  D+ V  +    D   ++   + GA  F  KP +R+ +  ++R     + 
Sbjct: 88  TLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 147

Query: 123 SKDENQFLDA 132
            + + Q L A
Sbjct: 148 LEGKVQALSA 157


>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+V+    +  + +      G+ V  A +  +A +F   +   + +++D  M G 
Sbjct: 1   MTHRILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFV--DDSLDLVILDVMMPGL 58

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R     ++V + +L  +        G  AG + ++ KPF++E L   +   
Sbjct: 59  SGIETCQQMRAS---SNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQ 115

Query: 118 PQMQKSKDENQFLDA 132
            +      E +  + 
Sbjct: 116 LRRYTVYQEKKEQEE 130


>gi|160901173|ref|YP_001566755.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366757|gb|ABX38370.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 342

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    +  +              A    +A E     L P+ +++D  M  +    
Sbjct: 116 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALE-LHHHLKPDLVLLDVQMPRLDGWQ 174

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
            ++ +R+     D  V  L         + G R GA+ ++ KPFN   +   ++ + +  
Sbjct: 175 VLSEIRRRG---DTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQAVLRRC 231

Query: 121 -QKSKDENQFLDA 132
            Q    + + L A
Sbjct: 232 GQGRLRDTKLLQA 244


>gi|117926352|ref|YP_866969.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
 gi|117610108|gb|ABK45563.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Magnetococcus sp. MC-1]
          Length = 353

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD +    ++     +D  + +  A    +A      +  P+ +++D  M G+
Sbjct: 1   MKQKILVVDDAPANLRILVESLSDE-YSIAAARDGHKAIALANAKHRPDLILLDVMMPGL 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     ++  P   D+ V ++    D E  + G   G   F+ KPFN   ++  +R  
Sbjct: 60  DGFEVCLKLKADPATWDIPVLFITALNDEENEVRGLTVGGVDFISKPFNPALVKARVRSH 119

Query: 118 PQMQKSKDENQFL 130
            +++  +D  + L
Sbjct: 120 LELKSHRDRLEEL 132


>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
 gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
 gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
 gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
 gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
          Length = 222

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+++    ++++     +  G+ V  A    E  +  ++    + +++D  M      
Sbjct: 4   SILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSY-DLVILDIMMPNLDGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V + +L    D    + G     + ++ KPF+   L   +  + + 
Sbjct: 63  GVCKMIRKSSS---VPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119

Query: 121 QK 122
             
Sbjct: 120 SN 121


>gi|90414946|ref|ZP_01222909.1| putative transcriptional regulator CpxR [Photobacterium profundum
           3TCK]
 gi|90323946|gb|EAS40544.1| putative transcriptional regulator CpxR [Photobacterium profundum
           3TCK]
          Length = 222

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD   ++ ++   + ++ G+ V        A  + +   + + +++D  +  + 
Sbjct: 1   MSNILVVDDDVMLCELLTEVLSEEGYDVHCLHDGESALTYMQAHSV-DLVLLDVMLPNID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPF    L   +  + + 
Sbjct: 60  GLQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRR 118

Query: 121 QKSKDENQFLD 131
              + + Q L+
Sbjct: 119 VGLERQRQGLN 129


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +LL + + + +++   L   FG  V  A +  +A     +    + +++D  M   G  E
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFE 1789

Query: 62   FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A +R+     G    +  +         +    AG + ++ KP N + L+  + +   
Sbjct: 1790 ATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYLF 1849

Query: 120  MQK---SKDENQFLDA 132
            + K   S ++ Q L A
Sbjct: 1850 ISKSCNSYEQFQQLQA 1865



 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 27/135 (20%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESM---- 56
            L+VD +    KV + + ++FG     + +  +A     K         ++ +D  +    
Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQLGTSL 1651

Query: 57   -EGVLEFIAHVRQMPLGTDVFVYYL-LM---EVDFEKMIAGARAGANSFLLKPFNRETLR 111
             + ++E      +        +  L          +            +L KP +   + 
Sbjct: 1652 IDMMVE------KNMNHCKTKIIMLISGGGQRGYPDSSSNFI----TGYLSKPVSPSEIF 1701

Query: 112  FAMRELPQMQKSKDE 126
                 +   Q    +
Sbjct: 1702 D----ILTRQGITRQ 1712


>gi|251793482|ref|YP_003008211.1| CpxR [Aggregatibacter aphrophilus NJ8700]
 gi|247534878|gb|ACS98124.1| CpxR [Aggregatibacter aphrophilus NJ8700]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    + ++   L +  GF +  A +  EA      +   + +++D  M    
Sbjct: 1   MAKILLVDDDAELTELLAQLLDLEGFEINVANNGKEALALL--DHSYDLILLDIMMPILN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R+        V  L    D    I G   GA+ +L KPFN   L   ++ + 
Sbjct: 59  GIETLKQIRKDFS---TPVMMLTARGDDIDRILGLELGADDYLQKPFNDRELVARIKAIL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 219

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ +  +    R +    G++V  A    EA  F E     + +++D  +  +   
Sbjct: 2   KILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSY-DVIILDLMLPDIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G D  V  L  +   +  I G   GA+ ++ KPF+ + L   +R + +   
Sbjct: 61  EVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRRVS 120

Query: 123 SKDENQFL 130
           ++ ++  L
Sbjct: 121 AEKKDIVL 128


>gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   +       F V EA +  +  +  EK    +  V+D  + G+ 
Sbjct: 1   MSRILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEK-FSIDLAVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L         I G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GFKVCDELRKR--YPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAIL 117

Query: 119 QMQKSKDE 126
           +    + +
Sbjct: 118 RRIGDEKQ 125


>gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 232

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 47/130 (36%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +    +       + V    S  EA +        + +V+D  MEG+  
Sbjct: 4   KKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMI--NDDFDLIVLDIMMEGIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         + ++  +   E  +     G + ++ KPF+ + L+  +    +
Sbjct: 62  MELCTIIRDRVDY---PIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLR 118

Query: 120 MQKSKDENQF 129
            ++    N+ 
Sbjct: 119 REERIRSNER 128


>gi|119489834|ref|ZP_01622589.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454262|gb|EAW35413.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 506

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L++D +    ++   L    G+ V    S   A +  +K   P+ +++D  M      E
Sbjct: 14  ILIIDDTPENLQLMVQLLTSVGYQVRAYISGNIALQGIKKTP-PDLILLDVMMPEISGYE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++  P   D+ V ++         +   + G   ++ KPF+ E +   ++   +  
Sbjct: 73  VCQKLKSDPETQDIPVIFISAMNTAIDKVKAFQVGGVDYITKPFHVEEVLARVQIQLENR 132

Query: 120 --MQKSKDENQFL-DAI 133
              Q  + +NQ L +A+
Sbjct: 133 CLRQSLQAKNQELSEAL 149


>gi|113955138|ref|YP_730441.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113882489|gb|ABI47447.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +VD    +R++      D G+ V   + V +  E   +   P+ +V+D  M G     
Sbjct: 21  IWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQ-LEARLEFQRPDLIVLDLMMPGDDGLT 79

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A  R    G D+ V  L    D    I G   GA+ +L KPF    L   +  + + + S
Sbjct: 80  ALRRLRDAGDDLPVVMLTARGDGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSS 139


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R      GF V  AT+   A E       P+ +++D  +  +  F
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAA-RPDLMILDVMLPDIDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  V V YL         IAG   G + ++ KPF  + L   +R + + 
Sbjct: 65  EICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRR 122


>gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional
           regulatory protein [Clostridium botulinum H04402 065]
          Length = 217

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G+ V EA+    A  + E     + +++D  +  + 
Sbjct: 1   MKKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIE-NTYLDIILLDIMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +     G  + V ++  + D    + G + GA+ ++ KPF    L   +  + + 
Sbjct: 60  GFS--IISKISGKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRR 117

Query: 121 QKSKDE 126
               +E
Sbjct: 118 CDKMEE 123


>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF V +A    EA E  EK  + N +++D  M G+ 
Sbjct: 1   MPTILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEV-NLMIVDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118


>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
 gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
          Length = 234

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+V+    +R + R       +   EA ++ +A      +  P+ +++D  + G   L
Sbjct: 5   TVLVVEDEKAIRDMLRMALEVAKYRFIEAENIRDA-HVLIVDERPDIVLLDWMLPGGSGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +++     ++ V  L  +   + +I G   GA+ ++ KPF    L   ++ L + 
Sbjct: 64  ELLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRR 123


>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 225

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + +      G  V EA    EA + C +E   + +V+D  M  + 
Sbjct: 1   MYKILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVC-REKEFDIIVMDVMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  +++   +   V  L    +    I G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GFSAC-KEIKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKR 118

Query: 121 QKSKDENQ 128
            +   + +
Sbjct: 119 SRGTSDTE 126


>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +       F V    +     E    E   + +++D  + G+ 
Sbjct: 1   MSRILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEE-FDLIILDLMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    H+R+     DV +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEVCKHIREK---KDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHM 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 241

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       +++ EA    EA E        + +++D  + G   +
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDY-DVILLDLMLPGKDGI 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           E    +R+        +  L  + +    + G   G + +++KPF+   +   ++
Sbjct: 68  EVCKEIREQ---KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119


>gi|294646991|ref|ZP_06724608.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806380|ref|ZP_06765223.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292637662|gb|EFF56063.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294446395|gb|EFG15019.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1339

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R      F D  F + E+ +  EA E   K+  P+ ++ D  M  +   
Sbjct: 1084 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1141

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201

Query: 120  MQKSKD 125
             Q+ + 
Sbjct: 1202 RQQLRK 1207


>gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
 gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL+D    +  + + + +  GF V EA                + +++D  M  +   
Sbjct: 3   NILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAI--NSDIDLILLDVMMPKLNGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  V  L  + +    + G   GA+ +L KPF+   L   +R + +   
Sbjct: 61  ETLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTS 119

Query: 123 SKDEN 127
           +  +N
Sbjct: 120 NTQKN 124


>gi|237715395|ref|ZP_04545876.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405239|ref|ZP_06081789.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229444704|gb|EEO50495.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356114|gb|EEZ05204.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1348

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R      F D  F + E+ +  EA E   K+  P+ ++ D  M  +   
Sbjct: 1093 RVLVVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGL 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1151 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1210

Query: 120  MQKSKD 125
             Q+ + 
Sbjct: 1211 RQQLRK 1216


>gi|171914206|ref|ZP_02929676.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Verrucomicrobium spinosum DSM 4136]
          Length = 2178

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           L  +    V   T+  +A +  E+    + +++D  M  +  
Sbjct: 2058 RKVLVVDDDARNIFALSILLENHDMEVLSVTNGRQAVKLIEENPDLSMVLMDIMMPEMDG 2117

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  +R+ P    + +  L  +           AGA+ ++ KP N E L   +R    
Sbjct: 2118 YQTMREIRKNPEFRTLPIIALTAKAMKGDREKCLEAGASDYIAKPVNTEQLLSLLRVWLH 2177

Query: 120  M 120
             
Sbjct: 2178 R 2178



 Score = 84.1 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 4/115 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            M  LL+V+ + I R+  + L       +       EA      +   +  V+D  +  + 
Sbjct: 1911 MKRLLVVEDNEIERESIKELLGGRDIQIVTVGRGKEALGLLLDQH-FDCAVLDLRLPDMS 1969

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
              E +  +++ P   +V +     +          R  A S +LK   + E L  
Sbjct: 1970 GFELLETIQKEPTLQEVPIVVYTGKDLSPDEEKQLRQVAKSVVLKDVQSPERLLD 2024



 Score = 77.5 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            LL+V+      +V   L  D GF    AT   +A     ++     + +D  +  +L + 
Sbjct: 1792 LLIVEDDVHYARVLLGLARDRGFKGLVATRGQQALALA-RQYQVTAITLDIFLPDMLGWT 1850

Query: 64   AH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                ++  P    + V  +      E+   G   GA S+++KP   + L  A   +
Sbjct: 1851 VLNNLKLDPTTRHIPVQIIS---LDEERRHGLSRGAFSYMVKPATTDDLEMAFDRI 1903


>gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 233

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LL++    V++         G  V  A S        E+   P+ +++D  +  + 
Sbjct: 1   MARVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERH-RPDLVLLDLMLPNMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+      + +  L    D   M+ G  AGA+ +++KP   E L   +R + 
Sbjct: 60  GLEVCRRIRES---KRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRSR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|284050982|ref|ZP_06381192.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira platensis str.
           Paraca]
          Length = 592

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD       +   +    G+ V +A +   A     K + P+ +++D  M G+    
Sbjct: 8   ILVVDDKPENLHLLSEILMLEGYNVRKAVNGKMAL-MAVKTVQPDLILLDIMMPGMDGYQ 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V +L    D    +    AG   ++ KPF  E +   ++    ++
Sbjct: 67  VCKELKNNQTLAKVPVIFLSALNDVFDKVKAFGAGGVDYITKPFQMEEVLVRVQNHLMLK 126

Query: 122 KSKDE----NQFLDA 132
           +++ +    N  L+A
Sbjct: 127 EAEKKILELNTELEA 141


>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F +  + V EA    EA    E+E + + +++D  +  +  
Sbjct: 3   KTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEV-HLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQ 121
            +
Sbjct: 119 SR 120


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + ++  +     G+            +   +    + +++D  + G+  F
Sbjct: 4   KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRN-FDLIILDIMLPGLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    +  L      E+++ G + GA+ ++ KPF    L   +  + +  +
Sbjct: 63  EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122

Query: 123 SKD 125
             D
Sbjct: 123 QDD 125


>gi|168182838|ref|ZP_02617502.1| regulatory protein VanR [Clostridium botulinum Bf]
 gi|237794279|ref|YP_002861831.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657]
 gi|182674012|gb|EDT85973.1| regulatory protein VanR [Clostridium botulinum Bf]
 gi|229263114|gb|ACQ54147.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657]
          Length = 236

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    +R   +       + + EA +  +A      E   + +++D  M  + 
Sbjct: 1   MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNAL-HENEIHLILLDVMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +     ++V + +L  + +    + G   G + ++ KPFN   L   ++   + 
Sbjct: 60  GIEVAQKIR-TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALRR 118


>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 240

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 56/130 (43%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
             +L++D    + K+   +    GF  ++ A          ++ + P+ +++D  +    
Sbjct: 8   KKILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKR-ISPDIILLDIMLPDEE 66

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    ++V + ++  + +    + G   G + ++ KPF+ + + + ++ + 
Sbjct: 67  GYEVCKKIRKS---SNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAIL 123

Query: 119 QMQKSKDENQ 128
           +     DE +
Sbjct: 124 RRSSYHDEEE 133


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +LL + + + +++   L   FG  V  A +  +A     +    + +++D  M   G  E
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVAS-SQLRKFDLILMDVQMPHCGGFE 1789

Query: 62   FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A +R+     G    +  +         +    AG + ++ KP N + L+  + +   
Sbjct: 1790 ATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYLF 1849

Query: 120  MQK---SKDENQFLDA 132
            + K   S ++ Q L A
Sbjct: 1850 ISKSCNSYEQFQQLQA 1865



 Score = 49.8 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 40/135 (29%), Gaps = 27/135 (20%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESM---- 56
            L+VD +    KV + + ++FG     + +  +A     K         ++ +D  +    
Sbjct: 1592 LIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKTTKPFEFIFVDAQLGTSL 1651

Query: 57   -EGVLEFIAHVRQMPLGTDVFVYYL-LM---EVDFEKMIAGARAGANSFLLKPFNRETLR 111
             + ++E      +        +  L          +            +L KP +   + 
Sbjct: 1652 IDMMVE------KNMNHCKTKIIMLISGGGQRGYPDSSSNFI----TGYLSKPVSPSEIF 1701

Query: 112  FAMRELPQMQKSKDE 126
                 +   Q    +
Sbjct: 1702 D----ILTRQGITRQ 1712


>gi|157825448|ref|YP_001493168.1| response regulator PleD [Rickettsia akari str. Hartford]
 gi|157799406|gb|ABV74660.1| response regulator PleD [Rickettsia akari str. Hartford]
          Length = 450

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDTVLLDVMMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T V V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GFEVCKTIKTNPETTHVPVVMVTALSDVDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   I  K  + +       V   ++  E  +    E  P+ ++I  ++E    
Sbjct: 152 KKILLINDDVIQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDLVIISSTLENEDP 209

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +   + E     ++ G   G N + + P     L   +R   +
Sbjct: 210 LRISVILRGKEEIRGVVIILQIDEDGMPLVVKGIELGVNDYFVYPIEESELLARIRTQLR 269

Query: 120 MQKSKD 125
            ++ +D
Sbjct: 270 RKQYQD 275


>gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ R      G+ + EA +   A E  E E  P+ +++D  + G+   
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEK-PDLVLLDLGLPGMSGH 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ V  L    D   ++     GA+ ++ KPF    L   +R   + + 
Sbjct: 66  ELLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 123 SKD 125
            + 
Sbjct: 126 QQQ 128


>gi|299145134|ref|ZP_07038202.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515625|gb|EFI39506.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1314

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 8/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            ++L+VD +  +    +  F   G+   +  A    EA +      +P+ +V D  M  + 
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              E    +++    + + V  L  + D + +I+G + GA+ +L KPF  E L   +R   
Sbjct: 1115 GYELCKTIKEDIAISHIPVILLTAKDDKQSLISGYKNGADGYLSKPFEVEMLMELIRNRL 1174

Query: 119  QMQKSKDENQFLDA 132
            + ++   + ++L+A
Sbjct: 1175 KNREYTKK-RYLNA 1187


>gi|295134774|ref|YP_003585450.1| histidine kinase [Zunongwangia profunda SM-A87]
 gi|294982789|gb|ADF53254.1| histidine kinase [Zunongwangia profunda SM-A87]
          Length = 743

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+     +           F ++ A +  E  E  +K   P+ ++ D  M  +   
Sbjct: 499 SILIVEDHPDFQDFLFSEL-KEDFNIYTAKNGLEGLEQVKKHH-PDLVISDIMMPVMTGI 556

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +++     + + V  L      E  + G  A A++++ KPFN E L+  +  L Q 
Sbjct: 557 TLCHNIKSDIEISHIPVILLSARSSEESKLKGFEAKADAYMDKPFNLEILKQRIENLVQE 616

Query: 121 QKSKDE 126
           Q+S+ E
Sbjct: 617 QQSRKE 622


>gi|260172959|ref|ZP_05759371.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
 gi|315921239|ref|ZP_07917479.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313695114|gb|EFS31949.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1372

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F D  F V  A +  E ++      +P+ +V D  M  +    
Sbjct: 1113 LLIVEDNEEIQKYIVESFTDS-FEVITANNGEEGKQQALS-RIPDIVVSDIMMPVMDGIT 1170

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                ++     + + +  L  +   +    G   GA+S+L KPF+   LR  +  L    
Sbjct: 1171 LCKQLKDDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1230

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1231 KKLVAQ 1236


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V    S  EA     +E  P+  ++D  M G+  F
Sbjct: 9   KVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEAL-KVAREFRPDAYILDVMMPGMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D  V +L  +   E  I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 68  ELLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 125


>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
 gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
          Length = 228

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + +V+    + ++  +     GF V    +  EA     K   P+ +V+D  +  + 
Sbjct: 1   MSLIYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNI-KSDYPDLIVLDIMLPDMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   ++      ++ +  L  +      I G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GLEFCKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVL 119

Query: 119 QMQK 122
           +  K
Sbjct: 120 KRSK 123


>gi|153869727|ref|ZP_01999263.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073808|gb|EDN70738.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 207

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLE 61
           ++L+VD S +   V  H      F V    S  EA +F       P+ +++D  M G+  
Sbjct: 6   TILIVDDSAVSTTVLSHFLTLNDFKVLVERSGDEALQFMNSASSKPDLILLDVMMPGISG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++Q     ++ + ++    D    I     GA  ++ KPF +E +   +     
Sbjct: 66  FETCKELKQNTKTQEIPIIFMTALSDTGDKIKAFELGAVDYVTKPFQQEEVLARINTHLT 125

Query: 120 MQKSKDEN 127
           + + + + 
Sbjct: 126 LCRLQQQL 133


>gi|119899743|ref|YP_934956.1| pilus protein [Azoarcus sp. BH72]
 gi|119672156|emb|CAL96070.1| pilus protein [Azoarcus sp. BH72]
          Length = 121

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD S   R     L    G+ V  A S  EA     K   P+ +++D  M G+  
Sbjct: 4   NKILVVDDSPTERLALTELLTRHGYQVATAESGEEAITK-SKSEKPDLILMDVVMPGMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 + +     ++ +     +      I G R GA  +L+KP     L   ++ +
Sbjct: 63  YQATRTISRDDATRNIPIIMCTSKGLETDKIWGMRQGAYDYLVKPVEHNELLARIKSI 120


>gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630]
 gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291]
 gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile]
 gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291]
          Length = 234

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D +  +R++   L    G+ V  AT+  EA    +     + +++D  M     
Sbjct: 7   KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST--IDLIILDVVMPVKTG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    T   + +L  +      + G  AG + +L KPF+   L   ++ L +
Sbjct: 65  FVACNEIREK---TTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLR 121

Query: 120 M----QKSKDENQ 128
                Q  + E +
Sbjct: 122 RYYIYQGKEKERE 134


>gi|17228726|ref|NP_485274.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130578|dbj|BAB73188.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 387

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+++    VR+    L    GF + EA +     +  ++E +P+ ++ D  M    
Sbjct: 1   MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEE-IPDLIICDVMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-EL 117
             E +  +RQ P    + + +L  + D      G   GA+ +++KPF R  L  A+   L
Sbjct: 60  GYEVLKALRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIACRL 119

Query: 118 PQMQKSKDENQF 129
            +    K ENQ 
Sbjct: 120 EKHITIKQENQR 131


>gi|134292232|ref|YP_001115968.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135389|gb|ABO56503.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 246

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   + +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSVAANGREMRNLLD-DGAPDLIVLDLMLPGEDGLA 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GRFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|300725823|ref|ZP_07059289.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
 gi|299776870|gb|EFI73414.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
          Length = 1390

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+V+ +H + +     F    F V +A +  E       E +P+ ++ D  M  +     
Sbjct: 1080 LVVEDNHDILEYVTASFAQH-FTVKQAQNGQEGLAIAL-ETIPDIIISDIMMPKMNGNMM 1137

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +++      + +  L  +   +  + G  AGA+S++ KPF    L   +  L Q +K
Sbjct: 1138 CRTLKEDMRTCHIPIILLTAKDSNDAKVEGYEAGADSYITKPFTHAILESRVNNLLQQRK 1197


>gi|284050134|ref|ZP_06380344.1| response regulator receiver Signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
          Length = 372

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L VD S     +   +  D G+ V+       A +    E  P  +++D  M G    E
Sbjct: 15  ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTIL-EKPPQLVLLDVMMPGIDGYE 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +        ++ G  AGA+ F+ KP   + L   +R L +++
Sbjct: 74  VTRRIRNNPNLPFIPILLITAHDQ-SSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLK 132

Query: 122 KSKDEN 127
           +S DE 
Sbjct: 133 ESIDEQ 138


>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
           processes YvrG [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
 gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
 gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
           processes [YvrG] [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
          Length = 237

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  + +A S  EA    +   + + +V+D  M G+  
Sbjct: 5   SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 64  FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120

Query: 120 MQKSKDE 126
                 E
Sbjct: 121 RTYQSKE 127


>gi|170079118|ref|YP_001735756.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169886787|gb|ACB00501.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 226

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LLL+D    +  + R      G+ +  A +  E  +  E E  P+ ++ D  M  +  
Sbjct: 22  TTLLLIDDDPNLILLVRDYLEFRGYDMLTAANGVEGLQILE-ETTPDLIICDVMMPEMDG 80

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI +VRQ    + + V +L  +      I G   GA+ +L+KPF  E L   +     
Sbjct: 81  YTFIQNVRQNSQISWIPVIFLSAKGQTCDRIEGLNQGADVYLVKPFEPEELVAQVESSLN 140

Query: 120 MQK 122
             +
Sbjct: 141 QAR 143


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + VF+  S  EA    E+E L +  ++D  M  +  F
Sbjct: 14  NILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGL-DLAILDIMMPEIDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++    +  V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 73  T-ILQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRR 129


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEIDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 219

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+V+    +R           + V EA +  EA          + +++D  + G+ 
Sbjct: 1   METILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIF-NNRKIDIVLLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +   +   V +  L      E  + G   GA+ +LLKPF+   L   +  L + 
Sbjct: 60  GFEVCQKIRDISQSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARIISLARR 119


>gi|118577252|ref|YP_899492.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Pelobacter propionicus DSM 2379]
 gi|118504757|gb|ABL01239.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Pelobacter propionicus DSM 2379]
          Length = 451

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 2/133 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +R+V  +   +  + V  A+S  E   +   +  PN ++ D  M G+
Sbjct: 1   MKAKILIIDDDTSLRRVLEYNLQEEDYEVHAASSGEEGL-YLFGQFRPNLVITDMKMSGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +          +  V  +      +  +   + GA  ++ KPFNR+ L+  +++  Q
Sbjct: 60  DGLMVLKSIKERSPETLVIIITAFGTVDVAVEAMKTGAYDYITKPFNRDALKLTVKKALQ 119

Query: 120 MQKSKDENQFLDA 132
                +EN+ L +
Sbjct: 120 FSGLAEENKRLKS 132


>gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 227

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +LLVD    + ++  +  ++ G+ V   ++  EA +  +K   P+ +++D  M
Sbjct: 1   MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHS-PHLIILDVMM 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R         + +     +    +AG  AGA+ ++ KP   + L   +
Sbjct: 60  PEMDGIEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKV 119

Query: 115 RELPQMQKSK 124
           + L +  K +
Sbjct: 120 KALLRRFKEE 129


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +      L    GF         EA    E+ + P+ +++D  + G  
Sbjct: 1   MTHVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFER-VNPDIVLLDLMLPGVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEICKTIRAKSA---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|190894793|ref|YP_001985086.1| putative two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
 gi|190700454|gb|ACE94536.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CIAT 652]
          Length = 2100

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD           +    G  V  AT+  EA +    E     +++D  M G+  +
Sbjct: 1981 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2040

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R  P    + +  L  +           AGA+ +L KP N E L  A+R     
Sbjct: 2041 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2100



 Score = 94.5 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    +A     +E  P+ + +D  +  +L   
Sbjct: 1714 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLA-QEYKPSAISLDIFLPDMLGWT 1772

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             ++ ++Q P    + V  +      E    G   GA +F+ KP   E L      ++   
Sbjct: 1773 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1829

Query: 119  QMQKSK------DENQFLD 131
            + ++ +      DE + L 
Sbjct: 1830 EPRRKQLLLVEDDEAERLS 1848



 Score = 72.1 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LLLV+     R     L       +    S  EA     +    + +V+D S+  +  
Sbjct: 1834 KQLLLVEDDEAERLSVTALLGHDDIDITSVGSGSEALAALRRNSA-DCVVLDLSLPDMSG 1892

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R      +V V          +  A   + A S ++K   + E L  
Sbjct: 1893 FEVLEQIRDDVEIGEVPVVVFTGRELSAEEDATLHSMARSVVVKGVESPERLLD 1946


>gi|126658584|ref|ZP_01729731.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
 gi|126620171|gb|EAZ90893.1| response regulator receiver domain protein (CheY-like) [Cyanothece
           sp. CCY0110]
          Length = 335

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD      ++   + +  G+    A S  +A E  E    P+ +++D  M  +  +E
Sbjct: 14  ILIVDDIPKNLQLLIEILDTSGYGTTFAVSGEQALERVEVTD-PDLILLDLMMPKMNGIE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + + +L    +   +I+   AGA  ++ KPF    L   ++    ++
Sbjct: 73  VCKRLKNNPKTEQIPIIFLTAATETNYLISAFEAGAVDYVTKPFKTPELLARIKTHLDLK 132

Query: 122 KSKDEN 127
           ++KDE 
Sbjct: 133 RTKDEL 138


>gi|86360995|ref|YP_472882.1| two-component sensor histidine kinase/response regulator hybrid
            protein [Rhizobium etli CFN 42]
 gi|86285097|gb|ABC94155.1| probable two-component sensor histidine kinase/response regulator
            hybrid protein [Rhizobium etli CFN 42]
          Length = 2099

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD           +    G  V  AT+  EA +    E     +++D  M G+  +
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINTEPSVAIVLMDIMMPGMDGY 2039

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R  P    + +  L  +           AGA+ +L KP N E L  A+R     
Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    +A     +E  P+ + +D  +  +L   
Sbjct: 1713 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALTLA-QEYKPSAISLDIFLPDMLGWT 1771

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             ++ ++Q P    + V  +      E    G   GA +F+ KP   E L      ++   
Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGRALSRLKAYA 1828

Query: 119  QMQKSK 124
            + ++ +
Sbjct: 1829 EPRRKQ 1834



 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LLLV+ +   R     L       +    S  EA     +    + +V+D ++  +  
Sbjct: 1833 KQLLLVEDNEAERMSVTALLGHDDIDITSVGSGSEALAVLRQGSA-DCVVLDLTLPDMSG 1891

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R      +V V          +  A   + A S ++K   + E L  
Sbjct: 1892 FEVLEQIRDDAEIAEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945


>gi|148262577|ref|YP_001229283.1| two component, sigma-54 specific, Fis family transcriptional
           regulator [Geobacter uraniireducens Rf4]
 gi|146396077|gb|ABQ24710.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter uraniireducens Rf4]
          Length = 456

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  H++R          G+ VF A +  +A     +E  P+ +++D  + G+  
Sbjct: 4   TKILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLV-REEQPDLVLLDIQLPGIGG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +      D+ V  L      E  +   R GA  ++ KPFN + L   +++  +  
Sbjct: 63  LEVLEKVKEFDEDIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALETS 122

Query: 122 KSKDENQFLDA 132
             + E   L +
Sbjct: 123 DLRREVVQLRS 133


>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 223

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|325106499|ref|YP_004276153.1| histidine kinase [Pedobacter saltans DSM 12145]
 gi|324975347|gb|ADY54331.1| histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1366

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            M ++L+V+ +  +R       +   ++V EA    E  +   KE +P+ +V D +M  + 
Sbjct: 1110 MHTVLVVEDNDELRTFLAQSLSGE-YLVLEARDGVEGLDLALKE-VPDIIVSDVTMPNMD 1167

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               F + V++  + + + V  L         + G  +GAN +L KPF+ + L   +R L 
Sbjct: 1168 GMEFCSLVKKNEVSSHIPVIMLTAMASHLHQVEGLESGANIYLTKPFSVQLLELHIRNLI 1227

Query: 119  QMQKSKDE 126
                +  E
Sbjct: 1228 NSANALKE 1235


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+VD    +  +   +F D G+ V +A +  +A +  +     + +++D  M  +
Sbjct: 1   MQESILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN--VDLIILDVMMPQM 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+        + +L  +      + G   G + ++ KPF  + L   +   
Sbjct: 59  DGFDLCKVIREQ---IYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAH 115

Query: 118 PQMQ---KSKDENQFL 130
            + +   +   +NQ L
Sbjct: 116 LRREQRDRVSTQNQRL 131


>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V               E   +  ++D  + G+ 
Sbjct: 1   MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAED-FDLFILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 235

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R           + V++A    E  E  E     +  ++D  M  +   
Sbjct: 5   NILIVEDDKEIRDGIEIFLKSQNYNVYKAADGVEGLEIIES-KEIHLAIVDIMMPRMDGV 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  V  L  + +    + G   GA+ ++ KPF    L   +    + 
Sbjct: 64  TMTLKLRE-HHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRR 120


>gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
 gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
          Length = 239

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 257

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+         G+ V  A     A E   +E  P+  V+D  M  +   
Sbjct: 12  RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRE-RPDIAVLDVMMPRMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
            A  +    G D+ V  L         ++G   GA+ +L+KPF  E L
Sbjct: 71  EACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 118


>gi|302036583|ref|YP_003796905.1| sigma-54 dependent DNA-binding response regulator [Candidatus
           Nitrospira defluvii]
 gi|300604647|emb|CBK40979.1| Sigma-54 dependent DNA-binding response regulator [Candidatus
           Nitrospira defluvii]
          Length = 466

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +      +  D G+ V  A S  EA + C     P  +++D  M  +   
Sbjct: 4   SILIVDDEVSILNSLSSILEDEGYEVSVAKSGIEALKLCAVSP-PELMMLDIWMPDMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L     V  +      E  +   + GA  ++ KP + E +   ++      +
Sbjct: 63  ETLRRLRELVPQTQVMMMSGHGSIETAVKAIKLGAYDYIEKPLSLENVTLRVKHALDQHR 122

Query: 123 SKDENQFL 130
            + EN+ L
Sbjct: 123 LEQENRTL 130


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +R +      + GF V EA    E  +  +K  + + +V+D  M  V   
Sbjct: 5   TILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKV-HLIVLDLMMPKVDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++     + +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KMCMKVREVAE---MPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRR 120


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  D    V  A +  EA +   +      +++D  M  +  
Sbjct: 1014 KKVLIVDDDMRNIFALATVLEDKNMEVVSADNGHEALKLLAENSDIALVLMDIMMPEMDG 1073

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +RQ P    + +  L  +           AGAN +L KP + + L   MR    
Sbjct: 1074 YETMRQIRQSPNFRKLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTDKLISLMRVWLY 1133

Query: 120  M 120
             
Sbjct: 1134 R 1134



 Score = 92.9 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            SLL+++       +      + GF    A       E  E    PN +++D  +  +  
Sbjct: 746 KSLLIIEDDRRFSHLLLESARETGFKCLLAEEGRMGLELAETHK-PNAIILDIGLPSIDG 804

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              + H++  P    + V+++         +   + GA  +L+KP + E L    +++
Sbjct: 805 WTVMEHLKDHPDTRHIPVHFISAFDQ---RLEAKKMGAIGYLIKPVSLEQLDETFQKI 859



 Score = 34.0 bits (78), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVL 60
            +LL++  S + ++    L +     +  A +   A +  +K      ++ +D   +  +
Sbjct: 868 KNLLVIADSEVHQQKILALLDTKEVNITLAVTRANALQHLKKIAFDCIILDMDIEQQSGI 927

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFE 87
           + +  ++Q      V +       D E
Sbjct: 928 KLLEQMQQESGLCQVPLI---TYADRE 951


>gi|17989136|ref|NP_541769.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23500221|ref|NP_699661.1| transcriptional regulatory protein OmpR [Brucella suis 1330]
 gi|62317658|ref|YP_223511.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
           str. 9-941]
 gi|83269641|ref|YP_418932.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|163844637|ref|YP_001622292.1| hypothetical protein BSUIS_B0474 [Brucella suis ATCC 23445]
 gi|189022907|ref|YP_001932648.1| Response regulator receiver [Brucella abortus S19]
 gi|225686276|ref|YP_002734248.1| putative transcriptional regulator ycf27 [Brucella melitensis ATCC
           23457]
 gi|237817205|ref|ZP_04596197.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
           2308 A]
 gi|254691154|ref|ZP_05154408.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 6
           str. 870]
 gi|254698937|ref|ZP_05160765.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254699728|ref|ZP_05161556.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 5 str.
           513]
 gi|254702863|ref|ZP_05164691.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 3 str.
           686]
 gi|254706012|ref|ZP_05167840.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           M163/99/10]
 gi|254711685|ref|ZP_05173496.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           B2/94]
 gi|254732384|ref|ZP_05190962.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 4
           str. 292]
 gi|256029680|ref|ZP_05443294.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
           M292/94/1]
 gi|256043373|ref|ZP_05446306.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256111617|ref|ZP_05452612.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 3
           str. Ether]
 gi|256157833|ref|ZP_05455751.1| Probable transcriptional regulator ycf27 [Brucella ceti M490/95/1]
 gi|256253205|ref|ZP_05458741.1| Probable transcriptional regulator ycf27 [Brucella ceti B1/94]
 gi|256256340|ref|ZP_05461876.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 9
           str. C68]
 gi|256262586|ref|ZP_05465118.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544890|ref|ZP_05820711.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564579|ref|ZP_05835064.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756755|ref|ZP_05869103.1| two-component system response regulator [Brucella abortus bv. 6
           str. 870]
 gi|260760185|ref|ZP_05872533.1| two-component system response regulator [Brucella abortus bv. 4
           str. 292]
 gi|260763423|ref|ZP_05875755.1| two-component system response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882570|ref|ZP_05894184.1| two-component system response regulator [Brucella abortus bv. 9
           str. C68]
 gi|261220313|ref|ZP_05934594.1| two-component system response regulator [Brucella ceti B1/94]
 gi|261313453|ref|ZP_05952650.1| two-component system response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319310|ref|ZP_05958507.1| two-component system response regulator [Brucella pinnipedialis
           B2/94]
 gi|261750193|ref|ZP_05993902.1| two-component system response regulator [Brucella suis bv. 5 str.
           513]
 gi|261753466|ref|ZP_05997175.1| two-component system response regulator [Brucella suis bv. 3 str.
           686]
 gi|265986690|ref|ZP_06099247.1| two-component system response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989794|ref|ZP_06102351.1| two-component system response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993097|ref|ZP_06105654.1| two-component system response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|265996340|ref|ZP_06108897.1| two-component system response regulator [Brucella ceti M490/95/1]
 gi|294853717|ref|ZP_06794389.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
 gi|297249702|ref|ZP_06933403.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|17984986|gb|AAL54033.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|23463825|gb|AAN33666.1| transcriptional regulatory protein OmpR, putative [Brucella suis
           1330]
 gi|62197851|gb|AAX76150.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
           str. 9-941]
 gi|82939915|emb|CAJ12928.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|163675360|gb|ABY39470.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
 gi|189021481|gb|ACD74202.1| Response regulator receiver [Brucella abortus S19]
 gi|225642381|gb|ACO02294.1| Probable transcriptional regulator ycf27 [Brucella melitensis ATCC
           23457]
 gi|237788018|gb|EEP62234.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
           2308 A]
 gi|260098161|gb|EEW82035.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152222|gb|EEW87315.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260670503|gb|EEX57443.1| two-component system response regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673844|gb|EEX60665.1| two-component system response regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676863|gb|EEX63684.1| two-component system response regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872098|gb|EEX79167.1| two-component system response regulator [Brucella abortus bv. 9
           str. C68]
 gi|260918897|gb|EEX85550.1| two-component system response regulator [Brucella ceti B1/94]
 gi|261298533|gb|EEY02030.1| two-component system response regulator [Brucella pinnipedialis
           B2/94]
 gi|261302479|gb|EEY05976.1| two-component system response regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739946|gb|EEY27872.1| two-component system response regulator [Brucella suis bv. 5 str.
           513]
 gi|261743219|gb|EEY31145.1| two-component system response regulator [Brucella suis bv. 3 str.
           686]
 gi|262550637|gb|EEZ06798.1| two-component system response regulator [Brucella ceti M490/95/1]
 gi|262763967|gb|EEZ09999.1| two-component system response regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000463|gb|EEZ13153.1| two-component system response regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092372|gb|EEZ16625.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264658887|gb|EEZ29148.1| two-component system response regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819372|gb|EFG36372.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
 gi|297173571|gb|EFH32935.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Brucella abortus bv. 5 str. B3196]
 gi|326410637|gb|ADZ67701.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553929|gb|ADZ88568.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 238

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V +      G+    A++  +A    E+E   + +++D  +  +   
Sbjct: 4   RILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENW-DLVLLDIMIPQLSGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-Q 121
               R         +  L    +    ++G   GAN ++ KPF  E L   +R   +   
Sbjct: 63  EVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVV 122

Query: 122 KSKDENQFLD 131
           ++ ++NQ L 
Sbjct: 123 QAANDNQTLS 132


>gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 229

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    + ++     ++ G+   +A    EA            L++D  M  +   
Sbjct: 2   KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L +  K
Sbjct: 62  -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 120

Query: 123 SK 124
            +
Sbjct: 121 MQ 122


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +    GF      +   A E   + + P+ +++D  + G   L
Sbjct: 4   RILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAF-RSVRPDLILLDLMLPGKDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L  + D   ++ G  +GA+ ++ KPF  + L   +R   +M
Sbjct: 63  EVCREIREESG---VPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRM 119

Query: 121 QK 122
            +
Sbjct: 120 SE 121


>gi|260769733|ref|ZP_05878666.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972]
 gi|260615071|gb|EEX40257.1| chemotaxis regulator CheY [Vibrio furnissii CIP 102972]
 gi|315182272|gb|ADT89185.1| chemotaxis protein CheY [Vibrio furnissii NCTC 11218]
          Length = 119

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    EA    +     + ++ D +M  + 
Sbjct: 1   MTKILAVDDSISIRQMVSHTLKDAGYDVETANDGREALTKAQSTK-FDVVISDVNMPNMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R  P    + +  L  E   EK   G  AGA  +L+KPFN +TL   ++ + 
Sbjct: 60  GFELVKAIRGNPQYKFIPILMLTTETSMEKKQEGKLAGATGWLVKPFNPDTLLKTLKRVL 119


>gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++  + F+  G+ V +A +  E  +  +     + +++D  M  +  +
Sbjct: 7   NILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKA-KSFSLILLDVMMPKMDGY 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +     +++ V  L  +      I G   G + +++KPF+   L   +  + +  K
Sbjct: 66  TMLCKLRES-SNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTK 124

Query: 123 S 123
           S
Sbjct: 125 S 125


>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 223

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R + R      G+ V  A    EA +  ++E  PN L++D  +    
Sbjct: 1   MK-ILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE--PNVLILDVMLPDTD 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R      D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + 
Sbjct: 58  GYELLRLFR--EKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMA 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
 gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
            4028]
          Length = 1356

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +  + G  V  A    E+     +    + +++D  M  +  
Sbjct: 1235 RTVLVVDDDMRNIFALTSVLEEKGMQVVVARDGSESLTRLRENPEIDLVLMDIMMPVMDG 1294

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R+ P   D+ +  L  +       A   AGAN +L KP + + L   +R    
Sbjct: 1295 YEAMREIRKDPKLKDLPIIALTAKAMKGDKNACIEAGANDYLAKPVDMDKLLSLLRVWLY 1354

Query: 120  MQ 121
             +
Sbjct: 1355 RK 1356



 Score = 90.6 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++      ++ R    + GF    A        F +    P+ +++D  + G+  
Sbjct: 967  KSLLIIEDDQHFARILRDQAREMGFKALLAADGETGLHFADFHG-PSAIILDNILPGMNG 1025

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  ++  P    + + ++  E      +   R GA +FL KP   ETL    R L +
Sbjct: 1026 WTVMERLKNDPKTRHIPLSFISAEDRS---LEAMRMGALAFLTKPVELETL----RTLLE 1078

Query: 120  MQKS--KDENQFL 130
               S  K   + L
Sbjct: 1079 RIDSFIKKPMRRL 1091



 Score = 81.4 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            M  LL+VD   + R+  R L  +       A S  EA    + +   + +++D  +  + 
Sbjct: 1088 MRRLLVVDDDALQRESIRALIGNGDVETVTAASGAEALGLLKSQN-FDCMILDLGLNDMS 1146

Query: 61   EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF----- 112
             F  +  +R  P  + + V         E+        A S ++K   + E L       
Sbjct: 1147 GFDVLRTLRSGPTPSTLPVVVYTGRDLSEEEERRLSRYAESIIVKGARSPERLLEETTLF 1206

Query: 113  --AMRELPQMQKSK 124
               ++     +K +
Sbjct: 1207 LHRVQANLPQEKQR 1220


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    + ++         + V       EA ++       + +++D  M  +   
Sbjct: 2   RILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPY-DAVILDIMMPKLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V  L  +   E  + G  AGAN +L+KPF  E L   +R L +   
Sbjct: 61  SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120

Query: 123 SKDE 126
           +  +
Sbjct: 121 AVQK 124


>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
 gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + ++        G+         +A    +     + +++D  + G  
Sbjct: 1   MSRILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHY-DLILLDLMLPGCS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R      D+ +  +    +   +I G   GA+ ++ KPF+   L   +R   
Sbjct: 60  GYDICRKIR---DEIDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 KRYE 120


>gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
 gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V  A +  E  E    E   + +++D  +  +  
Sbjct: 3   KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    + ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQQEKNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120

Query: 122 KSKD 125
             + 
Sbjct: 121 DIEA 124


>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 251

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM---EGV 59
           ++L+VD    +R++    F   G  V        A E    E   + +++D ++      
Sbjct: 24  TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSES-FDVVLLDVALGSGPNG 82

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R       V +  L         + G  AGA+ ++ KPF    LR  +R + +
Sbjct: 83  YEVCRTLRARRNV--VPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLR 140

Query: 120 MQKSK 124
               +
Sbjct: 141 RAGPR 145


>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + +    L    G+ V +A    +A E   ++ + + +++D  M  +    
Sbjct: 5   ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKV-HLVIMDVMMPKLDGLS 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           A ++      ++ +  L  + +    + G   GA+ ++ KP+N + L   ++   + 
Sbjct: 64  AVLKIRER-KNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRR 119


>gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
 gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +      + GF+V  A +  +  +   +    + +V+D  + G   
Sbjct: 6   TKVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQ-MDRLLERENFHLMVLDLMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     ++ +  L  + D    I G   GA+ ++ KPFN   L   ++ + +
Sbjct: 65  LSICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 122

Query: 120 MQKSK 124
            +  +
Sbjct: 123 RRAKE 127


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K         G+ V          +   +    + +++D  +  + 
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNY-DVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++       +  +         ++G   GA+ +L+KPF  E L   +R L + 
Sbjct: 60  GLEVA-RRLRETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118

Query: 121 QKSKDE 126
              + E
Sbjct: 119 IAIETE 124


>gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
 gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
          Length = 869

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           SLL++D +  +R     L     + V +A    E      ++ +P+ ++ D  M  +   
Sbjct: 625 SLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRD-VPDLIICDVMMPVMDGL 682

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   V+   + + + V  L      E+ + G   GA+++L KPF+ E L+  +R L   
Sbjct: 683 EFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSGEVLKSRVRNLLDN 742

Query: 121 QKSKD 125
           +K   
Sbjct: 743 RKLMK 747


>gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564]
 gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +++   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKP-IDLIITDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           D    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETEVVS 131


>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K+     +  GF    A S  EA    E E   +++++D  M G+  
Sbjct: 3   KKILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALE-ENHIDFIILDIMMPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+     +  +  L         I G   GA+ ++ KPF+ + L   +R   +
Sbjct: 62  LDVCRSIRKS---YNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118

Query: 120 M 120
            
Sbjct: 119 K 119


>gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 456

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A S  +A +  E+E + + +++D  M G+  F
Sbjct: 4   RVLVVDDILANVKLLEARLQAEYFEVLTANSGRQALDLLERESV-DVVLLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++       + V  +         + G  +GA+ FL KP +   L   ++ L ++
Sbjct: 63  ETCRHIKASHATHHIPVVMVTALDQPSDKVQGLESGADDFLTKPVDDIALVTRVKNLARL 122

Query: 121 QKSKDENQFLDA 132
           +   DE     +
Sbjct: 123 KMLNDEMMMRAS 134



 Score = 81.4 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLVD +           +  G   F    +  A     +      +V +       L 
Sbjct: 157 RVLLVDDNERSAARLLEFLSK-GNDAFAERDMHAALTKLTESNFDLLVVSLSLDAADGLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + VR +     + +  L+   D  +++ G   G N +L++P +R  L   ++   + +
Sbjct: 216 LCSQVRSLERTRHLPIIMLVEPGDEARLLRGLDMGVNDYLMRPIDRHELLARVKTQIKRK 275

Query: 122 KSKD 125
           +  D
Sbjct: 276 RHSD 279


>gi|239947824|ref|ZP_04699577.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922100|gb|EER22124.1| regulatory component of sensory transduction system [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 450

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GFEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQF 129
           +M+   +E + 
Sbjct: 120 RMKSLINELKL 130



 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 47/130 (36%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I   +E   +
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDLVIISSMLEN-DD 208

Query: 62  FIAHVRQMPLGTDVF-VYYLLMEVDFEK--MIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +    ++  V  +    +     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRGKAEISGVVIISQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           MD +L+V+    +R++ R      G     A    EA E  E++   + +V+D  M    
Sbjct: 1   MDRILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDY-DAVVLDVLMPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR+      V + +L      E+ + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFGVCRAVRRQSS---VPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALI 116

Query: 119 QMQKSKDE 126
           +  + + +
Sbjct: 117 RRSRGERK 124


>gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens TA208]
 gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens LL3]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  +  A S  EA EF + E   + LV+D  MEG+  
Sbjct: 5   SILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETA-DLLVLDVMMEGMSG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     TD  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 64  FEACTEIRN---YTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLK 120

Query: 120 MQKSKDE 126
               ++E
Sbjct: 121 RTYKREE 127


>gi|297162453|gb|ADI12165.1| Signal transduction histidine kinase-like protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 1154

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+ D +  VR   + L       V        A +      + + ++ D  M  +  F 
Sbjct: 649 LLVADDNADVRDYLKELLGP-DHEVLLVGDGRAALDTALSHPV-DLVLTDVMMPRLDGFA 706

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P  T + +  L      E  + G RAGA+ +L KPF+   L   +R   ++ 
Sbjct: 707 LVRALRADPRTTRLPIILLTARAGEEATVQGLRAGADDYLAKPFSARQLLARVRANLELS 766

Query: 122 KSKDE 126
           + +++
Sbjct: 767 RLREQ 771


>gi|260170267|ref|ZP_05756679.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
 gi|315918629|ref|ZP_07914869.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692504|gb|EFS29339.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1329

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 QRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEFWPELVLSDIMMPEMGG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    D   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 1121 DELCVAIKSDIETSHIPVLLLTALGDENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180

Query: 120  MQKSKD 125
             ++   
Sbjct: 1181 NRELLR 1186


>gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +VD    + ++   +  + GF          A E     + P+ +++D  + G+ 
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  L  + D   ++AG  AGA+ ++ KPF    L   +    
Sbjct: 60  GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARF 116

Query: 119 QMQKSKDEN 127
           ++ K   E+
Sbjct: 117 RIAKPAAED 125


>gi|218551104|ref|YP_002384895.1| DNA-binding transcriptional regulator CpxR [Escherichia fergusonii
           ATCC 35469]
 gi|218358645|emb|CAQ91295.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia fergusonii ATCC 35469]
 gi|324111467|gb|EGC05448.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325499383|gb|EGC97242.1| DNA-binding transcriptional regulator CpxR [Escherichia fergusonii
           ECD227]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+VD    +  + +      GF V  A       E    E  P+ +V+D  +  +     
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEK-PDLIVLDLMLPEMDGIEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             +      +V +  L  + +    I G   GA+ ++ KPF+   +   ++ + +  + K
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 125 DE 126
            E
Sbjct: 121 AE 122


>gi|153206919|ref|ZP_01945737.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212219514|ref|YP_002306301.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
 gi|120576992|gb|EAX33616.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013776|gb|ACJ21156.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
          Length = 245

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        GF    A    E +    K+ + + +++D  M G     
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAV-DLVILDIMMPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              RQM   + + +  L    +    I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 66  LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123


>gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    ++++ +      G+ V  A    EA    E E  P  +V+D  + G  
Sbjct: 1   MAVILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILE-EKQPELVVLDIMLPGIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
            LE +  +R+ P   ++ V  L  + +    + G   GA+ ++ KPF+   
Sbjct: 60  GLEVLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 110


>gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 312

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD   +   V +     + + V  A++  EA +        + +++D  M  +    
Sbjct: 19  ILVVDDDPLNLVVLKQTLQKY-YRVLSASNGQEALDVVSSNT-IDLILLDIKMPKMDGYQ 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  P    + V ++           G   GA  ++ KPF+   +   ++    ++
Sbjct: 77  VLKKLKNSPQTQSIPVIFISANDSHADEAKGLEMGAMDYITKPFSPPIVLVRVKNQLTIK 136

Query: 122 KSKDENQFLDAI 133
           +  D  + L +I
Sbjct: 137 QKNDLLEKLVSI 148


>gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae
           TIGR4]
 gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00]
 gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195]
 gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04]
 gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06]
 gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016]
 gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6]
 gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031]
 gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974]
 gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B]
 gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae]
 gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6]
 gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00]
 gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195]
 gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04]
 gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06]
 gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016]
 gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54]
 gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031]
 gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
 gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
 gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
 gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B]
 gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +K+   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  +    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETELIS 131


>gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
 gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacter capsulatus SB 1003]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V ++     GF V  A +  EA     +E  P+ +V+D  +     +E
Sbjct: 9   VLVVEDESAQREVLQYNLEAEGFRVVMAVNGDEAL-LFLREEKPDLVVLDWMLPNVSGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
               V+  P    + +  L    +    + G   GA+ +++KP++   L  
Sbjct: 68  ICRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMA 118


>gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 1406

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LL D +  +R     L ++  F V        A E       P  ++ D  M      
Sbjct: 634 RVLLADDNADMRAYVGRLLSER-FAVEAVPDGRSALEAVRARP-PELVLADVMMPQLSGF 691

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +A +R  P   D  V  L      E  + G  AGA+ +L KPF+   L   +    QM
Sbjct: 692 ELLAAIRDDPAIRDTPVILLSARAGEEARVEGMDAGADDYLTKPFSARELLARVSAHVQM 751

Query: 121 QKSKDE 126
            + + E
Sbjct: 752 SRMRQE 757



 Score =  105 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
             +L+VD +         L +  G  V  A    +A E  E    P  +++D  +      
Sbjct: 1289 RILVVDDNRDAADTLETLLSYSGHSVKVAFDGLQAVEVAEA-FRPEVILLDIGLPRIDGY 1347

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            E    +R  P   D  +  L      E     A AG +  L+KP +  TL  A+
Sbjct: 1348 EACRRIRAQPWARDATLVALTGWGQREDRRKSAEAGFDRHLVKPISSATLLEAI 1401


>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|117619500|ref|YP_858484.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560907|gb|ABK37855.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 426

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + K+        G+ V  A S   A +   ++   + ++ D  M G+ 
Sbjct: 1   MSRILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRA-DLVLSDLRMAGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R       + V  +         I   R+G  SFL KP +++ L   +     +
Sbjct: 60  GLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSL 119

Query: 121 QKSKDEN 127
            + K   
Sbjct: 120 TRPKQRQ 126


>gi|315606884|ref|ZP_07881892.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251421|gb|EFU31402.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1313

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
             L++V+ +  +R   RH+F    + V +      A E+ + + + + +V D  M G    
Sbjct: 1050 RLMVVEDNDDLRFYLRHIFEQE-YEVVDKPDGDAALEYLKSQTV-DLIVSDIMMPGIQGD 1107

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++Q    + + V  L  +   + M+ G   GA+ F+ KPF+ + L+  +R +   
Sbjct: 1108 EMCRLIKQNVETSHIPVILLTAKAGRDHMLKGLEGGADDFIAKPFDADVLKAKVRTMIHN 1167

Query: 121  QKSKDE 126
            +    E
Sbjct: 1168 RNRLRE 1173


>gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 250

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    AT    A    E +L P+ +++D  +  +  
Sbjct: 12  RTILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAE-QLKPDLIIMDIMLPIMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V +  L         I G  AGA+ ++ KPF+   L      L +  
Sbjct: 71  IEATRRIISKMP-VPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRV 129

Query: 122 KSKDE 126
           +   +
Sbjct: 130 ERASQ 134


>gi|237726839|ref|ZP_04557320.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435365|gb|EEO45442.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1339

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +L+V+ +  +R      F D  +    A +  E      K  +P+ ++ D  M     +E
Sbjct: 1086 ILIVEDNDDIRNYIATSFID-NYRTVTAKNGKEGWSMALK-YIPDIIISDIMMPEKNGIE 1143

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++      + V  L  +        G ++GA+S+L KPF+ + L   +  L +  
Sbjct: 1144 LCKLIKEDMRTCHIPVILLTAKDSILDKEEGYQSGADSYLTKPFSAKLLSSRINNLLESR 1203

Query: 121  QKSKD 125
            QK   
Sbjct: 1204 QKLAS 1208


>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 ARYERLSGN 125


>gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + +  +      G+ V  AT   +A +   KE   N +++D  +  +  
Sbjct: 5   QRILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVF-KEERFNLIILDVMIPEIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F          ++V + +L  +   E  I G + GA+ +L+KPFN E L   +  L +  
Sbjct: 64  FQVAETIRLQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG 123

Query: 122 KSKDENQFLDA 132
              D+ + L++
Sbjct: 124 MKGDDLKELNS 134


>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 247

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           SLLL+D    + ++        G  V    +  +  +    E   + +++D  + G+  F
Sbjct: 21  SLLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSA-AETKYDLVILDVMLPGMNGF 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       V V  L         I G  AGA+ +L KPF+ + L   +R + +   
Sbjct: 80  TLLSQLRRRTP-VPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRAS 138

Query: 123 SKDENQFLD 131
               +   D
Sbjct: 139 QAPADALFD 147


>gi|330957179|gb|EGH57439.1| osmolarity response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 245

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +      G+ V  A +  EA +   ++ +   ++ D  M G+   
Sbjct: 15  KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLII-DIMMPGMDGL 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G   GA+ ++ KPF  + L   ++   + 
Sbjct: 74  SATMKIRES-KNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRR 130


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +  + R      GF V EA +  +A     KE  P+ +++D  + G+  +
Sbjct: 15  SILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEP-PDAMILDVMLPGMDGY 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +GT+  V +L      E  + G   G + ++ KPF+ E +   +R + +   
Sbjct: 74  TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 123 SKD 125
             D
Sbjct: 134 KSD 136


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +++ +  +  +      I G   GA+ +++KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQKE 122


>gi|268317057|ref|YP_003290776.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
 gi|262334591|gb|ACY48388.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
          Length = 132

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    R L    G+ V        A E C + + P+ +++D  + G+  F
Sbjct: 7   RILIVEDEPSIALSLRFLMEQEGYQVHVVEDGEAALEAC-RNVPPDLVLLDVMLPGMSGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P G  + V  +        +  G   GA+++++KPF    +   +R L   
Sbjct: 66  EVCRQLKAGPDGQAIKVVLVTARGRETDLEKGRAVGADAYIVKPFAIREVMETVRTLLNR 125

Query: 121 QKSKDE 126
               ++
Sbjct: 126 SGEAEQ 131


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  +         F V       EA E+ +     + +++D  +  + 
Sbjct: 1   MK-ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNY-DLIILDIMLPKMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +  V  L      E  I G   GA+ +L+KPF+   L   +R + + 
Sbjct: 59  GYEVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR 118

Query: 121 QKSKDENQF 129
           +     N+ 
Sbjct: 119 KYGNVSNEL 127


>gi|256395913|ref|YP_003117477.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362139|gb|ACU75636.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 233

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R       + V  A     A     +  LP+ +V+D  +  + 
Sbjct: 2   MIKVLVVDDEPQLLRALRINLTARKYEVVTAIDGTSALAIAAR-TLPDLVVLDLGLPDLD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +   T+V +  L    D    +    AGA+ +L KPF+ E L   +R + + 
Sbjct: 61  G-AEVIKGLRGWTEVPIVVLSGRADASDKVEALDAGADDYLTKPFSMEELLARLR-VARR 118

Query: 121 QKSKD 125
              ++
Sbjct: 119 HADRN 123


>gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 509

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    D G+    A    EA E    E   + +++D  M  +   
Sbjct: 5   KILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAGE-QFDLIMLDIKMPRMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  V  +      +  +   + GA  ++ KPF+ + +   +     + +
Sbjct: 64  EVLSRL--KGDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAIGIDR 121

Query: 123 SKDENQFLD 131
           ++ EN  L 
Sbjct: 122 TRKENARLS 130


>gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114]
 gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component
           regulatory system with EnvZ [Vibrio fischeri ES114]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQ-MDRLLARETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q
Sbjct: 65  SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123


>gi|71737975|ref|YP_272551.1| osmolarity response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257481801|ref|ZP_05635842.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289627977|ref|ZP_06460931.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|298485217|ref|ZP_07003310.1| Two-component system response regulator OmpR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71558528|gb|AAZ37739.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160205|gb|EFI01233.1| Two-component system response regulator OmpR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322224|gb|EFW78320.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331860|gb|EFW87798.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866570|gb|EGH01279.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330873006|gb|EGH07155.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890972|gb|EGH23633.1| osmolarity response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986823|gb|EGH84926.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009435|gb|EGH89491.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|70733782|ref|YP_257422.1| osmolarity response regulator [Pseudomonas fluorescens Pf-5]
 gi|68348081|gb|AAY95687.1| DNA-binding response regulator OmpR [Pseudomonas fluorescens Pf-5]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  TACRRLRSANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 268

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   ++  P+ +V+D  +  +   
Sbjct: 43  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSA-RDFRPDAVVLDMMLPDMDGL 101

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 102 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 161

Query: 123 SKDE 126
           + D 
Sbjct: 162 AADR 165


>gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++        G  V        A E        + +V+D  + G     
Sbjct: 7   ILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGK-AMERALLASGVDLIVLDLMLPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +   +D+ +  L    +    I G   GA+ +L KPF+   L   ++ + +  +S
Sbjct: 66  LC-RNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARS 124

Query: 124 KDEN 127
              N
Sbjct: 125 LPRN 128


>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 249

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V        G+ V  A     A       L P+ +V+D  +      
Sbjct: 23  RVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARA-LRPDAVVLDVMLPDTDGL 81

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +  DV V  L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 82  TVLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAG 141

Query: 123 SKDE 126
              +
Sbjct: 142 MARQ 145


>gi|294644903|ref|ZP_06722639.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294808798|ref|ZP_06767528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|292639716|gb|EFF57998.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294443970|gb|EFG12707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1292

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1027 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1084

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1085 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1144

Query: 120  MQKSKD 125
             +    
Sbjct: 1145 NRALLR 1150


>gi|253566417|ref|ZP_04843870.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|265767277|ref|ZP_06094943.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|251944589|gb|EES85064.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_2_5]
 gi|263252582|gb|EEZ24094.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 2_1_16]
 gi|301165286|emb|CBW24857.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis 638R]
          Length = 1329

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +  +    R       + V  A +  EA    +     N +V D  M  +  F 
Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLD-NHYVNLVVSDVMMPQMDGFE 1142

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  + + +  I G   GA++++ KPF+ E L   +  L   +
Sbjct: 1143 LCKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLIHNR 1202

Query: 122  KSKDE 126
            +   +
Sbjct: 1203 EKLRQ 1207


>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G  
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 118 RRIEVHEE 125


>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V   +F+D  + V +A +  +A +  + +   + +++D  M  +  F
Sbjct: 4   TILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ--VDLVILDIMMPKMDGF 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+        + +L  +      + G   G + ++ KPF  + L   +    + 
Sbjct: 62  EFCKVVREQ---IKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRR 118

Query: 121 QKSKD---ENQF 129
           +K +    +NQ 
Sbjct: 119 EKRERVNLQNQR 130


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +      + +  ++D  + G+ 
Sbjct: 4   MSTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTV-DVALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V    ++ G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKTIR--EENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +   E
Sbjct: 121 RRIEVHKE 128


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +  +        GF V        A +    +   + +++D  +  +  F 
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQP-FDAIILDVMLPKLNGF- 62

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             ++ +    +  V  L    D    I G   GA+ +L KP N   L   +R + +  + 
Sbjct: 63  EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 124 KDENQ 128
               +
Sbjct: 123 IPAQR 127


>gi|60683701|ref|YP_213845.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
 gi|60495135|emb|CAH09956.1| putative two-component system sensor kinase/response regulator fusion
            protein [Bacteroides fragilis NCTC 9343]
          Length = 1329

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +  +    R       + V  A +  EA    +     N +V D  M  +  F 
Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLD-NHYVNLVVSDVMMPQMDGFE 1142

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  + + +  I G   GA++++ KPF+ E L   +  L   +
Sbjct: 1143 LCKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLIHNR 1202

Query: 122  KSKDE 126
            +   +
Sbjct: 1203 EKLRQ 1207


>gi|53715770|ref|YP_101762.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
 gi|52218635|dbj|BAD51228.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides fragilis YCH46]
          Length = 1329

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +  +    R       + V  A +  EA    +     N +V D  M  +  F 
Sbjct: 1085 ILVVEDNPDMLAFIRKQLTTE-YSVLTAMNGIEALAVLD-NHYVNLVVSDVMMPQMDGFE 1142

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  + + +  I G   GA++++ KPF+ E L   +  L   +
Sbjct: 1143 LCKTIKSDLSYSHIPVVLLTAKTNIQSKIEGLELGADAYIEKPFSVEYLLANISSLIHNR 1202

Query: 122  KSKDE 126
            +   +
Sbjct: 1203 EKLRQ 1207


>gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---VL 60
           +L+V+    +R++        GF   +A  V EA +       P  +++D  + G    +
Sbjct: 6   ILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDH-RPALILLDWMLPGDKSGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F   ++   L  ++ V  L  + + +  + G  AGA+ ++ KPF+   L   ++ + + 
Sbjct: 65  DFCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR 124

Query: 121 QKSKD 125
             +  
Sbjct: 125 SNALS 129


>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 656

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    + KV         + V  AT   E     E     + +++D  +     +
Sbjct: 2   RILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKY-DLILLDWMLPKLTGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R         +  L  +      +    AGA+ +L+KP +   L   +R + + 
Sbjct: 61  DLCKQLRN--ARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRR 118



 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+VD    +    R +   +GF +       +  E  E +  P+ L++D  M     +
Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIE-QCTPDLLILDVQMPEFSGI 582

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VR  P   ++ V +L    D E +     AGA+ ++ KP     L   +    + 
Sbjct: 583 DLCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIER 642

Query: 121 QKSK 124
            + +
Sbjct: 643 SQLR 646



 Score = 71.0 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---- 58
            LL+VD    + +        +   V  A  + +AR+   +   P+ +++D         
Sbjct: 399 RLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARN-RPDVVLLDLCFPDSAGN 457

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +A ++       V V    ++  F + +  AR G   FL KP   + +  A+ +  
Sbjct: 458 GLELLAELKTTQPPVPVVVLT--VKESFAERVRVARLGGRGFLRKPVAPQKVMDAIAKAL 515

Query: 119 QMQKS 123
           Q   S
Sbjct: 516 QQSGS 520


>gi|313204586|ref|YP_004043243.1| two component transcriptional regulator, arac family [Paludibacter
            propionicigenes WB4]
 gi|312443902|gb|ADQ80258.1| two component transcriptional regulator, AraC family [Paludibacter
            propionicigenes WB4]
          Length = 1140

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
            L+VD +   R+    +F    + + +A     A +    E +P+ ++ D  M  +  F  
Sbjct: 893  LIVDDNEDFREFISSMFI-ENYRILKAEDGKIAYQLIL-EKMPDLVISDVMMPNMDGFEL 950

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               ++Q    + + +  L  +   E    G  +GA  ++ KPFN E L   ++++   QK
Sbjct: 951  CRLMKQDIRISHIPIILLTAKDGEENKYHGLESGAEDYIPKPFNMEMLSLKVKKIVDRQK 1010

Query: 123  SKDEN 127
               + 
Sbjct: 1011 KIRDQ 1015


>gi|295690169|ref|YP_003593862.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
 gi|295432072|gb|ADG11244.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter segnis ATCC 21756]
          Length = 454

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V  A     A    +++  P+ +++D  M G+  F
Sbjct: 4   RILVVDDIEANVRLLEAKLAAEYYEVSTAMDGQTAINMAQRDP-PDIILLDVMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + V  +         I G  AGA+ FL KP +   L   +R L + 
Sbjct: 63  TVCRKLKEDPATRHIPVVMITALDGRADRIQGLEAGASDFLTKPIDDVMLFARVRSLTRF 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KLVIDELRQREA 134



 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +    +                T    A          + ++++ + +G    
Sbjct: 155 RVLVVDDNERQAERLAGEL-AADHRPVVETDPETA--RVSASGPVDLVIVNAAAKGFDGL 211

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +R       + V  L+   D  +M+     G N  L +P + + L    +   Q 
Sbjct: 212 RFTAALRSDERTRHLPVLALVDPDDRARMVKALEIGVNDILTRPVDPQELSARAKTQIQR 271

Query: 121 QKSKD 125
           ++  D
Sbjct: 272 KRYTD 276


>gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585]
 gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +K+   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  +    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETELIS 131


>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  V      +  F   +  +  +A     +E  P+  ++D  +  +  F
Sbjct: 4   KILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEK-PDLAILDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++       V  L  + ++   I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 63  T-ILQKIRETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRR 119


>gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM--NIGSYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  +  + I
Sbjct: 123 TQQGEPERAPEQI 135


>gi|209522707|ref|ZP_03271265.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
 gi|209496756|gb|EDZ97053.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Arthrospira maxima CS-328]
          Length = 580

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++   +VR+    L     F V EAT      +  E+E  P+ ++ D  M    
Sbjct: 1   MKKILIIEDERLVRENLVELLTFENFQVLEATDGLRGVKLAEQE-QPDLILCDVMMPILD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF----AM 114
               +A +RQ P    +   ++    D          GA+ ++ KP +   L       +
Sbjct: 60  GYGVLAQLRQNPKTAIIPFIFMTALADRMNTRKAMELGADDYITKPCSAAELMRSITVRL 119

Query: 115 RELPQMQKSKDENQ 128
            +   MQ+    NQ
Sbjct: 120 EKYSNMQRYYQNNQ 133


>gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 245

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        GF    A    E +    K+ + + +++D  M G     
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAV-DLVILDIMMPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              RQM   + + +  L    +    I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 66  LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123


>gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + +      G  V  A    E  +   +E   + LV+D  M G   
Sbjct: 6   THILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKE-MKRLLEEREFDLLVLDLMMPGEDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++   + + +  L    +    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 65  LTLC-RELRAKSCMPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRT 123

Query: 122 KSKDE 126
             + +
Sbjct: 124 NVEPQ 128


>gi|46201806|ref|ZP_00054307.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 241

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +           V  A    E  +  + E   + +V+D  + G     
Sbjct: 8   ILVVDDDREIRDLLTKFLMRHNLRVSAAKDGVEMMKMLD-ERRIDLVVLDLMLPGEDGLS 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R     + V +  L    +    I G   GA+ +L KPFN   L   ++ + +  ++
Sbjct: 67  LCRRMRESRSGVPIVMLTAMGEDTDRIVGLEMGADDYLPKPFNPRELLARIKAVLRRTQA 126

Query: 124 KD 125
            +
Sbjct: 127 SE 128


>gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +      + GF+V  A +  +  +   +    + +V+D  + G   
Sbjct: 6   TKVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQ-MDRLLERENFHLMVLDLMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     ++ +  L  + D    I G   GA+ ++ KPFN   L   ++ + +
Sbjct: 65  LSICRRLRQKEN--EIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 122

Query: 120 MQKSK 124
            +  +
Sbjct: 123 RRAKE 127


>gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + ++        G+ V++A +     +  EKE   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKET-IHLVLLDIMMPGMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L         I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMCKKIRE---TNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
 gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +++   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKP-IDLIITDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           D    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETEVVS 131


>gi|258591511|emb|CBE67812.1| Response regulator receiver protein [NC10 bacterium 'Dutch
           sediment']
          Length = 397

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R++  H    +G+ V +A    +A +  + E   ++++ D  M     L
Sbjct: 2   RILIVDDDVDMRRLLLHTLQSWGYDVVQAIDGAQAWDLLQNEP-FSFVITDWIMPNLDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       +++  L  +   E++I G  AGA+ FL+KPFN   L+  +R   ++
Sbjct: 61  ELCRRIRGARFTRYIYIILLTAKHSKEELIKGMEAGADDFLIKPFNAGELKVRIRAGERI 120

Query: 121 QKSKDENQ 128
            K +   +
Sbjct: 121 IKLESNLE 128


>gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    +R V ++     G+ V  A     A    E     + +++D  M  +   
Sbjct: 5   RILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGG-IDLVILDVLMPELDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     DV + +L    +    I G   G + ++ KPF+   L   ++ + + 
Sbjct: 64  NLCRKLRERG---DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR 120

Query: 121 QKSKD 125
             ++ 
Sbjct: 121 VAARR 125


>gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
 gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQKQ 122


>gi|163792858|ref|ZP_02186834.1| diguanylate cyclase [alpha proteobacterium BAL199]
 gi|159181504|gb|EDP66016.1| diguanylate cyclase [alpha proteobacterium BAL199]
          Length = 377

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  A++  EA    E+E  P+ +++D  M  +  F
Sbjct: 4   RVLVVDDILPNVKLLEAKLSSEYFDVLTASNGPEALAVIEREN-PDIVLLDVMMPVMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  T + V  +    D    + G  AGA+ FL KP     L    R L ++
Sbjct: 63  EVCRRIKADPRTTHLPVVMVTALSDVADRVRGIEAGADDFLTKPVVDSALFARFRSLLRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +  +
Sbjct: 123 KMMMDEWRLRE 133



 Score = 81.4 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++ + I         +     V    S     E   ++  P+ ++   ++E   + 
Sbjct: 156 RLLIIEDNAIDAFNMIESLSVDNGEVKRVASGRAGFEAATRQD-PDLVICSLNLED-DDA 213

Query: 63  IAHV---RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
           +  +   R       + +  +  E   +K+      GAN +L+KP +R  L  
Sbjct: 214 LRLLSQFRANEATRHLPILMVGEEDQTDKLAKALDLGANDYLMKPVDRNELLA 266


>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 250

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R +      + G+     +    A E  +       E   + +V+D  +
Sbjct: 20  RILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  + +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQISGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQ 121
           R L + Q
Sbjct: 138 RALIRRQ 144


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    +  + +  F   GF+ + A    +A +   +E  P+ +V+D  + G+  
Sbjct: 4   NSVLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKI-REQKPDIVVLDLMLPGIDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    R   +G D+ +  L    +    + G   GA+ ++ KPF+   +   +R + +  
Sbjct: 63  WEVCRRARKIG-DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRS 121

Query: 122 K 122
            
Sbjct: 122 H 122


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  + G  V  A +   A E  EK    + +++D  M  +  
Sbjct: 2330 KKVLVVDDDMRNIFALTSVLENQGLQVIFAENGRAAIEMLEKNRDVDVVLMDIMMPEMDG 2389

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +     +RQ      + +  +  +   +       AGA+ +L KP + + L   +R
Sbjct: 2390 YETMQAIRQNLQYAQLPIIAITAKALKDDREKCMAAGASDYLPKPVDTDKLIELIR 2445



 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      ++   +  + GF V  A+           E LP+ + +D  +  V    
Sbjct: 2062 LLIIEDDLKFARIMAQMAREKGFKVLVASRGDSGLAMA-NEYLPHAITLDIQLPVVDGWS 2120

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL---P 118
             +  +++      + V+ +           G   GA  +L KP ++E L     +L    
Sbjct: 2121 VLERLKRNGRTRHIPVHVIS----VMDKHLGNTHGAFGYLTKPVSKEGLERVFSQLAHFL 2176

Query: 119  QMQKSK 124
            + +  +
Sbjct: 2177 ERKSRR 2182



 Score = 71.0 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 2    DSLLLVDSSHIVRKVGRHLF-NDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              LLL++   I R     L        V    +  EA    E E   + LVID  +  + 
Sbjct: 2181 RRLLLIEDDDIQRDSLVKLLSEGSDVEVTGVATGQEALHKLE-EGEYDCLVIDLLLPDMD 2239

Query: 61   E--FIAHVRQMPLGTDVFVYY-----LLMEVD 85
                +  V+  P   D+ +       L  + +
Sbjct: 2240 GAKLVEEVKTQPRFRDLPIVIYTGKELTAKDE 2271


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|27377399|ref|NP_768928.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27350543|dbj|BAC47553.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 527

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD     R +        G  V       +A +        + +++D  M  +   
Sbjct: 184 SILVVDDIEANRDLLSRRLTRDGHRVSSVAGGQQALQAL-ANDEFDLVLLDLMMPDINGL 242

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++       + V  +    + E  +    AGA  +L KPF+   LR  +      
Sbjct: 243 DVLVRMKADERLRRIPVIMITALAETESAVRCIEAGAEDYLPKPFDPILLRARINACLHK 302

Query: 121 QKSKDENQ 128
           ++ +D  Q
Sbjct: 303 KRWRDREQ 310


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + +  +  F   G+ V          +    E   + +++D  + G+
Sbjct: 2   MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEAL-EGDYDLVLLDIMLPGI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +D+ V  L  + + +  + G   GA+ ++ KPF+ E L   +R   +
Sbjct: 61  DGF-EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALR 119

Query: 120 MQK 122
            +K
Sbjct: 120 KKK 122


>gi|289646445|ref|ZP_06477788.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +         GF    A    +A E   +   P+ +V+D  + G+   
Sbjct: 5   RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRS-APDLVVLDLMLPGLDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V  L    +    + G   GA+ +L KPF+   L   +R L +  +
Sbjct: 64  EVCRRLQAERP-VPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIE 122

Query: 123 SKD 125
              
Sbjct: 123 RAR 125


>gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC
           5463]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQKQ 122


>gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330]
 gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330]
 gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 236

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    + ++     ++ G+   +A    EA            L++D  M  +   
Sbjct: 9   KILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L +  K
Sbjct: 69  -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127

Query: 123 SK 124
            +
Sbjct: 128 MQ 129


>gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     R + + +  + G+ V  A +   A +  +KE   + +V+D  M  + 
Sbjct: 1   MFHILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEH-IDLVVLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R       + +  +  + D      G   G + ++ KP + E +   ++ L 
Sbjct: 60  GYEFTKTIR--ETNDALPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALL 117

Query: 119 QMQKSKDENQ 128
           +  +   E +
Sbjct: 118 RRAQIVSERK 127


>gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +VD    + ++   +  + GF          A E     + P+ +++D  + G+ 
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPI-VKPDLILLDVMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  L  + D   ++AG  AGA+ ++ KPF    L   +    
Sbjct: 60  GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARF 116

Query: 119 QMQKSKDEN 127
           ++ K   E+
Sbjct: 117 RIAKPAAED 125


>gi|253701837|ref|YP_003023026.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251776687|gb|ACT19268.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 441

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D       +   L  ++ + ++ A               P+ +++D  M G+  F 
Sbjct: 15  VLVIDDDMNNLAIVSSLLQEYSYTIYVAEDGESGIRRALL-TRPDLILLDVLMPGIDGFE 73

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++ M    D+ V ++    + E+ + G  AGA  +++KP  RE +   +     ++
Sbjct: 74  TCQRLKAMEGTRDIPVIFMTALAEMEQKVRGFEAGAVDYIVKPLQREEVLARVGVHIHIR 133

Query: 122 KSKDENQFLDA 132
               E Q  +A
Sbjct: 134 HLSKELQETNA 144


>gi|119486032|ref|ZP_01620094.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119456807|gb|EAW37935.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 440

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++   +  + G+ V +A +   A    +  + P+ +++D +M  +    
Sbjct: 14  ILVVDDTPANLRLLSKMMTEHGYNVRQAINGKMALTAVKA-VKPDLILLDINMPEMNGYT 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +++      + + +L    D    +   + G   ++ KPF  E +   ++   
Sbjct: 73  VCETLKKNEETCSIPIIFLSALDDALDKVKAFQVGGVDYVTKPFQLEEILVRIQNQL 129


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +        GF V    +  +  +        + +V+D  + G+ 
Sbjct: 1   MKQILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNY-SIVVLDIMLPGIS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + + V  L    +    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GL-DVLRRLRPQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRR 118

Query: 121 QK 122
            +
Sbjct: 119 VQ 120


>gi|67459442|ref|YP_247066.1| response regulator PleD [Rickettsia felis URRWXCal2]
 gi|67004975|gb|AAY61901.1| Regulatory components of sensory transduction system [Rickettsia
           felis URRWXCal2]
          Length = 450

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDTILLDVMMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GFEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDIALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 58.3 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P++++I  ++E    
Sbjct: 152 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDFVIISSTLENEDP 209

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +   + E     ++ G   G N + + P     L   +R   +
Sbjct: 210 LRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQLR 269

Query: 120 MQKSKDENQ 128
            ++ +D  +
Sbjct: 270 RKQYQDNLR 278


>gi|332828824|gb|EGK01516.1| hypothetical protein HMPREF9455_02349 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1442

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
            L++D +  +R      F+ + FMV  A    +  +    E+ P+ ++ D  M  +  F  
Sbjct: 1193 LIIDDNDDIRNFLIDEFSKY-FMVEVAEDGQKGLQKAI-EINPDLIICDVMMPAMDGFEV 1250

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +++      + +  L      E  + G ++GA+++++KPF+ + L   + +L + ++
Sbjct: 1251 TRRLKEDFQTCHIPIILLTAHSSIEHQLEGIQSGADAYIMKPFSLKYLVTRVFKLIEQRE 1310

Query: 123  SKDE 126
               +
Sbjct: 1311 QLKK 1314


>gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6]
 gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +K+   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  +    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLIGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETELIS 131


>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
 gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   N +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-NLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 221

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 16/145 (11%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +           G+ V  A +  +A E   +   P+ L+ D  M  +   
Sbjct: 4   TILIVDDEPGISLSVSDYLQLSGYSVVTAANGKQALEMLNR-YQPHLLITDIVMPEMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VRQ P    + V +L      ++ I G ++G + +L KPF  E L   +R L   
Sbjct: 63  DLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLLDR 122

Query: 121 -------------QKSKDENQFLDA 132
                         +++ E + L A
Sbjct: 123 MQMIQTDWHIRTKSQARGEMETLAA 147


>gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
 gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    +R          G+ + EA +  EA E   +    +  ++D  +  +
Sbjct: 1   MKEKILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDM 60

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E   ++RQ      V +  L  +   E  + G  +GA+ +++KPF+ + L   +  L
Sbjct: 61  SGIEVCKYIRQ--KFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAAL 118

Query: 118 PQMQKSKDENQFLDAI 133
            +  K ++ +  L+ I
Sbjct: 119 LRRVKKEESSMKLNKI 134


>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D      K+   L  + G+ V +A       +  E +  P+ +++D  M      +
Sbjct: 3   ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVE-QYNPDLILLDVMMPKTNGFD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +DV + +L      +  + G + G + +L+KPF    L   +  + + +
Sbjct: 62  VCRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRR 118

Query: 122 KS 123
            S
Sbjct: 119 NS 120


>gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae]
          Length = 233

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++  +     G+ V  A+S     +    E   + +++D  +      
Sbjct: 5   RVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLL-NEYRCDLVILDVMLPDASGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L    D +  + G  AGA+ ++ KPF+ + L    + + + 
Sbjct: 64  ALCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123

Query: 121 QKSKDENQFLD 131
                + +  +
Sbjct: 124 SGGVVQPELRE 134


>gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
 gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G     A S  EA            +++D  M G+ 
Sbjct: 1   MTKILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTNPDIALMILDVMMPGMN 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   V+ +   T++ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 61  GF-DVVKAVRKDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 119

Query: 121 QKSKDENQ 128
             ++ +++
Sbjct: 120 SSNEVKDE 127


>gi|332993901|gb|AEF03956.1| putative response regulator [Alteromonas sp. SN2]
          Length = 550

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD   I R +   + ++ GF    EA    +A    E + +P+ +++D  M G+
Sbjct: 1   MK-ILIVDDEPINRTMLVSMLSEAGFTDCVEAACGEDALAIVE-QAIPDLVLLDVIMPGM 58

Query: 60  LEFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R +  G  + + ++    D E ++     G N F  KPF++  L   +R  
Sbjct: 59  SGFEVAPQIRTLAGGRYLPILFITALDDKESLVKCLEVGGNDFATKPFDKHILTAKIRAH 118

Query: 118 PQMQKS----KDENQFL 130
            +++      + +N+ L
Sbjct: 119 EKIRNLSAHIEQQNEEL 135


>gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G ++GA+ +L+KPF    L   +  + + 
Sbjct: 61  TLCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRR 119

Query: 121 QK 122
            +
Sbjct: 120 SQ 121


>gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 262

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R +        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRR 122


>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 247

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R +        G+ V  A+    A         P+ +V+D  +     F
Sbjct: 12  TVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQA-GSRRPDLIVLDVMLPDTDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G    V +L      E  I G  +G + ++ KPF+ + +   +R + + 
Sbjct: 71  RLTRELRAQ--GVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRR 128

Query: 121 QKS 123
             +
Sbjct: 129 AGA 131


>gi|153875655|ref|ZP_02003359.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152067881|gb|EDN66641.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 335

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD+LL+VD       +         F V  A     A +       P+ +++D  M G  
Sbjct: 1   MDTLLVVDDVPANVNLLLKFLTQANFKVLVAKDGESALKKAAYAK-PDLILLDVMMPGLT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++      ++ + ++    +    + G   GA  ++ KP   E +   +    
Sbjct: 60  GFEVCKILKSQTQTQNIPIIFMTALSETVDKVKGFSLGAVDYITKPVQHEEILVRINTHV 119

Query: 119 ----QMQKSKDENQFLD 131
               Q +K +++N+ L+
Sbjct: 120 KIHQQQRKIQEQNETLN 136


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL D    +  +        GF V  A+    A +   ++  P+  ++D +M G+   
Sbjct: 7   TVLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTV-RDTPPDLALLDWNMPGMTGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + V  +    + +  +A   AGA+ F+ KPFN   +    + L +  +
Sbjct: 66  DICRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQ 125


>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A +  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   + + +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  G-IEVIKEVRKDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 SEN 121


>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V         + V+   +  EA E C K    +  ++D  + G+  F
Sbjct: 2   NILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALE-CMKTTKIDLAILDVMLPGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++       V  L  + ++   I G   GA+ ++LKPFN   L   ++   +   
Sbjct: 61  -EILKKIRERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYT 119

Query: 123 SKDENQFLDA 132
             +E    D+
Sbjct: 120 QYNEGTRTDS 129


>gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1358

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1163

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1224 QQEKRKQE 1231


>gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 454

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V   +    A      E  P+ +++D  M G+  F
Sbjct: 4   RILVVDDVEANVRLLEAKLTLEYYDVLTCSDGATAVRLAASEK-PDIILLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + +  +      E  I G  AGA+ F+ KP +   L   +R L ++
Sbjct: 63  ETCRRIKADPATNHIPIVLVTALDGREDRIKGLEAGADDFVTKPLDDVVLFARVRSLTRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  D 
Sbjct: 123 KLVMDELRERDE 134



 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVL 60
            +L+VD +                     T           +   + ++++ +      L
Sbjct: 155 RVLIVDDNARQAAGIAEELTRE-HRPVIETDAAAGL--ISSKTPVDLMIVNVTAASFDGL 211

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             IA VR       + +  ++   D  +++     G N  L++P + E L    R   + 
Sbjct: 212 RLIAQVRSADPTRHLPILAVVDPADRPRLVKALELGVNDILMRPVDPEELAARARTQVRR 271

Query: 121 QKSKD 125
           ++  D
Sbjct: 272 KRYTD 276


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    + ++   +    G+ V        A       + P+ +++D  + G     
Sbjct: 16  VLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRA-VNPDLVLLDVMLPGKDGMS 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V +  L    D   ++ G  AGA+ ++ KPF  + L    R   +  
Sbjct: 75  VCREIRAESG---VPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRY 131

Query: 122 KSKDENQF 129
               + Q 
Sbjct: 132 TPPQQAQL 139


>gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4]
 gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4]
          Length = 457

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    +A + C++    + +++D  M G+  F
Sbjct: 5   RILVVDDVPANVKLLEARLLAEYFEVLTAEDGLKALDICDR-TQVDVVLLDVMMPGIDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         + G +AGA+ FL KP N   L   ++ L ++
Sbjct: 64  EVCERLKSSPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLISRVKSLVRL 123

Query: 121 QKSKDENQFLDA 132
           +   DE +    
Sbjct: 124 KTLSDELRIRAE 135



 Score = 66.0 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--E 61
           +LLVDS    ++            V   +    A      E   + ++++ ++E      
Sbjct: 159 VLLVDSRASSQERIIKALKPV-ADVVAMSDAQAALFEA-AESNFDLVIVNGTLEDYDPLR 216

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +  + +   ++     G N ++++P +   L        + +
Sbjct: 217 LCSQLRSLDRTRFIPILLIADQGEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRRK 276

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 277 RYNDRLR 283


>gi|219666561|ref|YP_002456996.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
 gi|219536821|gb|ACL18560.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
          Length = 1022

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD      +V   +     + V  A S  +A E  + E   + L+ D  M G+ 
Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEK-FHLLLTDLMMPGMS 750

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +RQ     ++ +          ++    + GAN ++ KPF  E +++ +R L 
Sbjct: 751 GIELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810

Query: 119 QM-----QKSKDENQFLDA 132
           ++     +  + E  +L A
Sbjct: 811 KLTDTMEKAFESEMAYLQA 829


>gi|189464019|ref|ZP_03012804.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM
            17393]
 gi|189438592|gb|EDV07577.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM
            17393]
          Length = 1399

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLLV+ +  +  +   L     + +  AT   EA E  E     + +V D  M  +   
Sbjct: 1142 TLLLVEDNEDLLALMVKLLGAE-YDICTATDGKEALEVVESAD-IDLIVSDVMMPVMDGI 1199

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   V+     + + +  L  +   E  +    +GA++F+ KPFN   L   +  L + 
Sbjct: 1200 EFCKAVKGNFDTSHIPLILLTAKSKEEDRVEAYESGADAFIAKPFNLSILHARIGNLLKS 1259

Query: 121  QK 122
            ++
Sbjct: 1260 RE 1261


>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 118 RRIEVHEE 125


>gi|149198961|ref|ZP_01876002.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155]
 gi|149137956|gb|EDM26368.1| serine/threonine kinase [Lentisphaera araneosa HTCC2155]
          Length = 704

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD +    +V           V  A    +A    EK   P+ +++D  M      E
Sbjct: 9   ILIVDDNANNLQVLFKTLAVLDAKVLVAKGGLQALVTVEK-RKPSLILLDIMMPDKDGYE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +++     D+ + +L      +  + G   GA  F+ KPF  E +   ++   +++
Sbjct: 68  VCAELKENEETKDIPIIFLSALGQVQDKVKGLDLGAVDFITKPFQAEEVVSRVKTQLRLK 127

Query: 122 K----SKDENQFLDA 132
           +     KD+N  L+A
Sbjct: 128 RLSESLKDKNALLEA 142


>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
 gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
 gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ V +A    EA +  +KE   + +++D  M  +  
Sbjct: 3   NTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKEN-IHLMILDIMMPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+     ++ +  L  + +    I G   GA+ +L KPFN   L   ++ L +
Sbjct: 62  IEVCRKVRESL---NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 236

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V        A      E  P+  + D  M  + 
Sbjct: 1   MATIALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTAL-AEDPPDLGIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +++ V +L  + D      G   GA+ ++ KPF++  L   ++ + + 
Sbjct: 60  GL-ELLRRLRQSSNLPVIFLTSKDDEFDEALGLNLGADDYIAKPFSQRLLGERVKAVLRR 118

Query: 121 QKSKDE 126
            +   E
Sbjct: 119 ARLSGE 124


>gi|186684616|ref|YP_001867812.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nostoc punctiforme PCC 73102]
 gi|186467068|gb|ACC82869.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Nostoc punctiforme PCC 73102]
          Length = 406

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    VR+    L     F    A +          E +P+ ++ D  M    
Sbjct: 1   MPKILIIEDEEAVRENILDLLEAEDFETIAAANGRIGVHLAICE-VPDLILCDMMMPEID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ P    +   +L  +        G   GA+ ++ KPF+R  L  A+    
Sbjct: 60  GYGVLTALRQDPSTATIPFIFLTAKSAKSDFRQGMDMGADDYITKPFSRAELLSAIMNRL 119

Query: 119 QMQKSKDE 126
           +   +  +
Sbjct: 120 EKYATLKK 127


>gi|315919193|ref|ZP_07915433.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313693068|gb|EFS29903.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1409

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  +  + V EA    EA        + ++++ D  M  +   
Sbjct: 1157 TILVVEDNVDMRGYIRSILREQ-YNVLEAADGEEALHILNSNPV-DFIISDLMMPVMDGV 1214

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  +   R G + +LLKPF+   L   ++ + + 
Sbjct: 1215 ELSRRVKDTFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1274

Query: 121  QKSKDENQFLD 131
            +K       LD
Sbjct: 1275 RKRYQRKFTLD 1285


>gi|260170861|ref|ZP_05757273.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1384

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  +  + V EA    EA        + ++++ D  M  +   
Sbjct: 1132 TILVVEDNVDMRGYIRSILREQ-YNVLEAADGEEALHILNSNPV-DFIISDLMMPVMDGV 1189

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  +   R G + +LLKPF+   L   ++ + + 
Sbjct: 1190 ELSRRVKDTFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1249

Query: 121  QKSKDENQFLD 131
            +K       LD
Sbjct: 1250 RKRYQRKFTLD 1260


>gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +           G+ V  A +  EA +   K    + +++D  M  + 
Sbjct: 1   MYKVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIV-KHNDVHLVLMDIMMPVMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A V ++   ++V V  L  + +    + G   GA+ ++ KPFN   L+  ++   + 
Sbjct: 60  GIEAMV-EIRKISNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIRR 118


>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 226

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +  + GF    A     A     +E  P+ +++D  + G   +
Sbjct: 5   KILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRE-RPDLVLLDLMLPGIDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +DV +  L  + D   ++ G  +GA+ ++ KPF    L   +R   + 
Sbjct: 64  EVCRLIRAE---SDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120

Query: 121 QKSK 124
            ++K
Sbjct: 121 GEAK 124


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 3/133 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLV+ + + ++V   L    G  V  A +   A E   +    + +++D  M  +  +
Sbjct: 987  RVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVELAAQH-RFDTVLMDIQMPVMDGY 1045

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R      D+ +  +      +       +G N ++ KP N + L   +    + 
Sbjct: 1046 EASRLIRADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYSTLERWGRA 1105

Query: 121  QKSKDENQFLDAI 133
                 +     ++
Sbjct: 1106 ASGIPDQSRAASL 1118



 Score = 59.8 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP---NYLVIDESME 57
           M  LL++D S   R +   LF   G     A S  E     E+   P     L    S  
Sbjct: 837 MK-LLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYDLLLLDDSLSGL 895

Query: 58  GVLEFIAHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                   VR+M        +  +    D E        G +  L +P    +L  A+  
Sbjct: 896 DGFAVARQVRRMSPLHHQPKIIMITGYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAVVA 955

Query: 117 LPQ 119
             +
Sbjct: 956 AFE 958


>gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
 gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein
           [Psychromonas ingrahamii 37]
          Length = 295

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDS-----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
           M       +L+VD S     +     N  G+    A +  +A    EK + P+ +++D  
Sbjct: 1   MKHNNSDVVLVVDDSPESLGMLNVALNSQGYTALVALNGLQALAIAEK-VPPDVVLLDAM 59

Query: 56  MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           M  +  F    R   +  +  + ++    D E ++ G  AG   ++ KP + + +   ++
Sbjct: 60  MPQMDGFETCRRLKLILPNTPIIFMTGLTDVEDVVKGFEAGGVDYVTKPISPDEVIARIK 119

Query: 116 ELPQMQKS 123
              +  K 
Sbjct: 120 RHIETAKL 127


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +++ +  +  +      I G   GA+ +++KPFN   +   +R L + 
Sbjct: 60  G-IEVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQKE 122


>gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 263

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+LLV+    +R +        G+ V  A++  E     E   + + +V+D  + G   
Sbjct: 32  KSILLVEDDPALRLLTARALRAHGYDVGTASTGAEMWVALESGAV-DLIVLDIMLPGQTG 90

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+    +DV V ++      +  + G   GA+ +L KPF    L   +  + +
Sbjct: 91  IELFRRLRRD---SDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLR 147

Query: 120 MQKSKDE 126
             +++DE
Sbjct: 148 RGQAEDE 154


>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +      +  G+ V +A    EA +  E E + + LV+D  M  + 
Sbjct: 1   MYNILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDV-HLLVLDVMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRATLKIRENNS-IPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 118


>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLLVD    +R+         GF V    +  EAR         + +++D  M G     
Sbjct: 7   LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNAN-AIDLVILDIMMPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              H+R+    +++ V  L  + +    I G   GA+ ++LKPF+   L   ++ + + 
Sbjct: 66  LCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121


>gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +          + V  A     A         P+ +V+D  +  + 
Sbjct: 1   MTRVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASH-QPDVVVLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +   T V V  L      E+ +A   AGA+ ++ KPF+ + L   +R   + 
Sbjct: 60  GV-DVIKALRGWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 TEA 121


>gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + +      G  V EA    EA + C +E+  + +V+D  M  + 
Sbjct: 1   MYKILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVC-REMEFDIIVMDVMMPELD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+        V  L    +    I G   G + +++KPF+ + L   +  + 
Sbjct: 60  GFSACKEIRK---FCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIV 116

Query: 119 QM 120
           + 
Sbjct: 117 KR 118


>gi|253568235|ref|ZP_04845646.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251842308|gb|EES70388.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1329

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R    +  +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 QRILIVEDNDELRAYLVNSLSPM-YNVQACGNGKEAL-IIVKEFWPELILSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    + + ++ G   GA+ +++KPF+   L+ ++  L  
Sbjct: 1121 DELCSTIKNDIETSHIPVLLLTALGEEQNILDGLDIGADEYIVKPFSIRILKASIANLLA 1180

Query: 120  MQKSKD 125
             +    
Sbjct: 1181 NRALLR 1186


>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F +  + V EA    EA    E+E + + +++D  +  +  
Sbjct: 3   KTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEV-HLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQ 121
            +
Sbjct: 119 SR 120


>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQK 122
            +K
Sbjct: 119 SRK 121


>gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 322

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S         +    G+ V  A    +A      E  P+ +++D  +  +    
Sbjct: 7   ILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEP-PDLVLLDMILPDMDGLE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  V+  P    + V  L ++ D +  +AG R GA+ FL KPF    +      + +++
Sbjct: 66  VLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRIK 125

Query: 122 KSKDENQ 128
             +D+ +
Sbjct: 126 TLQDQLR 132


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +    + G+ +       EA  + +     + +++D  +    
Sbjct: 1   MK-ILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSY-DLIILDIMLPKKD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        +  +  L  +      + G  +GA+ +L+KPF+ + L   +R L + 
Sbjct: 59  GITVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRR 118

Query: 121 Q 121
           +
Sbjct: 119 E 119


>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 236

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +V+    ++++ R    + G+ V          E  E++  P+  V+D  + GV  
Sbjct: 4   KLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKK-PDLFVLDIMLPGVDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++      + +  L  + D    + G   GA+ ++ KPF+       ++   +
Sbjct: 63  FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 122

Query: 120 MQKSKDEN 127
            Q    EN
Sbjct: 123 RQADSFEN 130


>gi|29346368|ref|NP_809871.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338263|gb|AAO76065.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1329

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R    +  +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 QRILIVEDNDELRAYLVNSLSPM-YNVQACGNGKEAL-IIVKEFWPELILSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E  + ++     + + V  L    + + ++ G   GA+ +++KPF+   L+ ++  L  
Sbjct: 1121 DELCSTIKNDIETSHIPVLLLTALGEEQNILDGLDIGADEYIVKPFSIRILKASIANLLA 1180

Query: 120  MQKSKD 125
             +    
Sbjct: 1181 NRALLR 1186


>gi|89893285|ref|YP_516772.1| hypothetical protein DSY0539 [Desulfitobacterium hafniense Y51]
 gi|89332733|dbj|BAE82328.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1022

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD      +V   +     + V  A S  +A E  + E   + L+ D  M G+ 
Sbjct: 693 MKKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEK-FHLLLTDLMMPGMS 750

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +RQ     ++ +          ++    + GAN ++ KPF  E +++ +R L 
Sbjct: 751 GIELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLL 810

Query: 119 QM-----QKSKDENQFLDA 132
           ++     +  + E  +L A
Sbjct: 811 KLTDTMEKAFESEMAYLQA 829


>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    ++ +      D G+    A    EA E   K    + +++D  M  +  
Sbjct: 3   KTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELF-KSKQVDLILLDIMMPKLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L  +      + G   GA+ ++ KPF+ + L   +  L +
Sbjct: 62  LSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLK 119

Query: 120 MQKSKDEN 127
              +  + 
Sbjct: 120 RADAGAQE 127


>gi|300786407|ref|YP_003766698.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
 gi|299795921|gb|ADJ46296.1| two-component system sensor kinase [Amycolatopsis mediterranei U32]
          Length = 1516

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    G  V  A    +  E        + +++D  M  +  
Sbjct: 1396 RTVLIVDDDPRNVYALTGILELHGMHVLHAEDGRKGVETVASHPGIDLILMDVMMPEMDG 1455

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R MP    + +  +  +           +GA  ++ KP + + L   ++   
Sbjct: 1456 YTATAKIRAMPEHAGIPIVAVTAKAMPGDREKSLASGATDYVTKPVDADDLIARIKRHV 1514


>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ +      GF V               E   + L++D  + GV 
Sbjct: 1   MSRILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHED-FDLLILDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    +  +  +  + +    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICRKVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597]
 gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +++   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKP-IDLIITDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           D    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETEVVS 131


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    V    +    +  + V  A    E  +    E   + +V+D  +     L
Sbjct: 2   RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLAL-EKPFDLIVLDWMLPKKDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        +  L  +   E ++AG  +G++ +L KPF    L   +R L + 
Sbjct: 61  SVLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118

Query: 121 QKS 123
            + 
Sbjct: 119 SEL 121


>gi|160886454|ref|ZP_02067457.1| hypothetical protein BACOVA_04465 [Bacteroides ovatus ATCC 8483]
 gi|156108339|gb|EDO10084.1| hypothetical protein BACOVA_04465 [Bacteroides ovatus ATCC 8483]
          Length = 1337

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1128

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L 
Sbjct: 1129 GDELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLL 1188

Query: 119  QMQKSKD 125
              +    
Sbjct: 1189 ANRALLR 1195


>gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1438

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    G  V  A +  E  E   +    + +++D  M  +  
Sbjct: 1309 RTVLVVDDDARNLYALSGILELHGINVLHAENGIEGIEALREHPGIDLILMDVMMPEMDG 1368

Query: 62   FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + A   +R++P    + +  +  +           AGA+ ++ KP + + L   +R    
Sbjct: 1369 YTATMKIREVPAHATLPIVSVTAKAMPGDREKSLAAGASDYVTKPLDADDLIACVRRWLG 1428

Query: 120  MQKSKD 125
             +  + 
Sbjct: 1429 RRSDEA 1434


>gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 319

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LL +    +R          G+ V       EA     +   P+ LV+D  M G+  
Sbjct: 3   QNVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHR-TRPDVLVLDVMMPGIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G    +  L   V+    IAG  AGA+ +++KPF+ E +   +R L +
Sbjct: 62  LQVCRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 119

Query: 120 MQKSKD 125
              + D
Sbjct: 120 RTGNAD 125


>gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+V+    +R++ +      G+ V EA    EA E  ++    + +++D  +  +   
Sbjct: 4   SILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNS-ISLVILDIMLPLLDGW 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++R+      V +  L  + + +  + G   GA+ ++ KP + + L   ++ L + 
Sbjct: 63  TVCTNIREKSE---VPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKR 119

Query: 121 QK 122
            +
Sbjct: 120 IQ 121


>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +  + G  V       +A     +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAF-REARPDLVLLDVMLPGL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L    D   ++ G  +GA+ +++KPF  + L   +R  
Sbjct: 60  DGMEVCRRIRAESG---VPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRAR 116

Query: 118 PQM 120
            + 
Sbjct: 117 LRR 119


>gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 248

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +     +  G     AT+  E      +E   + +V+D ++ G   
Sbjct: 8   THILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSE-MRRVLEESRVDLIVLDLTLPGEDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R +   + V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 67  LTLC-RNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 125

Query: 122 KSKDEN 127
           ++   N
Sbjct: 126 QALPPN 131


>gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Bacteroides sp.
            3_1_23]
 gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Bacteroides sp.
            3_1_23]
          Length = 1360

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1165

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1226 QQEKRKQE 1233


>gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11]
 gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQ-MDRLLARETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q
Sbjct: 65  SICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R +   + N+     + A S  EA +   +E   + +++D  M    
Sbjct: 2   MTTVLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREK-IDLVLLDVMMPHED 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R M   ++V + +L      E  + G   G + +++KPF  + L   +  + 
Sbjct: 61  GFVVCQSIRAM---SNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVL 117

Query: 119 QMQKS 123
           +   +
Sbjct: 118 RRSGA 122


>gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
 gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
          Length = 1360

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1165

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1226 QQEKRKQE 1233


>gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+V+    + K+        G+    + S   A E   +    + +++D  + G+  F 
Sbjct: 6   LLVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSR-KCFDLILLDIMLPGMNGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++Q  +  D+ +  L  + +    I G   G + +++KPF+   L   +R + +  
Sbjct: 65  LCQKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLKRD 124

Query: 120 MQKSKDENQFLD 131
            +KS    + L+
Sbjct: 125 RRKSAKMQEILN 136


>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 235

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R++   L +  GF+V+EA++   A    EK    + +++D  M 
Sbjct: 4   MKKNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEK--PVDLIILDIMMP 61

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G    E    +R++   T V + +L  +        G   G + +L+KPF++  L   ++
Sbjct: 62  GRNGFELCTEIRKI---TTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIK 118

Query: 116 ELPQM 120
            L + 
Sbjct: 119 ALLRR 123


>gi|186681435|ref|YP_001864631.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186463887|gb|ACC79688.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 364

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L VD       V   +  D G+ +        A    E E  P+ +++D  M      
Sbjct: 11  KILAVDDVFDNLLVLEAVLEDEGYEISLVEDSKIALAMVE-ESPPDIILLDVMMPEIDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EF   +RQ P    + +  L        ++ G  AGA+ F+ KPF+ + L   +R L ++
Sbjct: 70  EFTRRIRQNPALPFIPILLLTAHYQ-SSVVEGLDAGADDFIRKPFDPDELHARVRSLLRL 128

Query: 121 QKSKDENQFLDAI 133
           + S DE   +  +
Sbjct: 129 KHSIDERDQMANL 141


>gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 736

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +   + R+         G  V  AT+ CEA +  E++   + +++D  M  +   
Sbjct: 610 RILLAEDEQLNREFVTFFLLGEGHTVTTATNGCEALDLLERQD-FDVVLMDVQMPELDGL 668

Query: 63  --IAHVRQMPL--GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R +       V +  L      E       AG + +L KP + + LR ++  + 
Sbjct: 669 EATRRIRSLEKPDKAHVPIIALTAYAMKEDRERVMAAGMDDYLSKPLDMDELRRSLARIL 728

Query: 119 -QMQKSK 124
            + +K +
Sbjct: 729 AERKKLE 735


>gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++ D +  +R     L     + V        A     +E  P+ ++ D  M  +  F
Sbjct: 604 RIVVADDNADMRDYLLALLGGA-YRVEAVDDGLRALAAAHREP-PDLVLTDVMMPNLDGF 661

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      +V V  L      +  I    AG + +L+KPF+   L   +  + + 
Sbjct: 662 ALREALRAEAATREVPVIMLSARAGEQARIEAIDAGVDDYLVKPFSARELLARIGAVLER 721

Query: 121 QKSKDENQFLDA 132
                E + +  
Sbjct: 722 DAELRERRAVQE 733



 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD +         L    G  V  A S  EA    E  L P+ +++D  + G+  
Sbjct: 1126 RRVLVVDDNQDAANALAALLETDGHQVTVAYSAPEALALAES-LRPDAVLLDIGLPGMDG 1184

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R  P      +  +              AG ++ L+KP     L+  +R+   
Sbjct: 1185 HEVARRMRASPRLRRAQLIAVTGYGQASDRENSMSAGFDAHLVKPVAVPLLQRMLRQAGA 1244

Query: 120  MQ 121
             +
Sbjct: 1245 RR 1246


>gi|298483251|ref|ZP_07001430.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298270568|gb|EFI12150.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1314

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            ++L+VD +  +    +  F   G+   +  A    EA +      +P+ +V D  M  + 
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + V  L    D +  I+G + GA+ +L KPF  E L   +R   
Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174

Query: 119  QMQKSKDENQFLDA 132
            + ++   + ++L+A
Sbjct: 1175 KNREYTKK-RYLNA 1187


>gi|298387105|ref|ZP_06996659.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298260255|gb|EFI03125.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1354

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA +  +K+ +P+ ++ D  M
Sbjct: 1088 KRIEDAKMLIVEDNESIKQMLAGIFETF-YQVTTASDGVEALDIIQKD-MPSIILSDVVM 1145

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1146 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRC 1205

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1206 NNLVNSRRLLQE 1217


>gi|295085850|emb|CBK67373.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1314

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            ++L+VD +  +    +  F   G+   +  A    EA +      +P+ +V D  M  + 
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + V  L    D +  I+G + GA+ +L KPF  E L   +R   
Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174

Query: 119  QMQKSKDENQFLDA 132
            + ++   + ++L+A
Sbjct: 1175 KNREYTKK-RYLNA 1187


>gi|293369312|ref|ZP_06615899.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292635642|gb|EFF54147.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1139

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            ++L+VD +  +    +  F   G+   +  A    EA +      +P+ +V D  M  + 
Sbjct: 883  TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 939

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + V  L    D +  I+G + GA+ +L KPF  E L   +R   
Sbjct: 940  GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 999

Query: 119  QMQKSKDENQFLDA 132
            + ++   + ++L+A
Sbjct: 1000 KNREYTKK-RYLNA 1012


>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ +       F V       +  +        +  ++D  + G+ 
Sbjct: 1   MSRILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNY-DMYILDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R   +  +V +  +  + +    I G   GA+ ++ KPF+   L   ++     
Sbjct: 60  GFELCKRIREV-KNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLAR 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|253568914|ref|ZP_04846324.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840933|gb|EES69014.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1354

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA +  +K+ +P+ ++ D  M
Sbjct: 1088 KRIEDAKMLIVEDNESIKQMLAGIFETF-YQVTTASDGVEALDIIQKD-MPSIILSDVVM 1145

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1146 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAVEHNIEGLKIGADDYITKPFNTNLLISRC 1205

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1206 NNLVNSRRLLQE 1217


>gi|237722073|ref|ZP_04552554.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448942|gb|EEO54733.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1314

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            ++L+VD +  +    +  F   G+   +  A    EA +      +P+ +V D  M  + 
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + V  L    D +  I+G + GA+ +L KPF  E L   +R   
Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174

Query: 119  QMQKSKDENQFLDA 132
            + ++   + ++L+A
Sbjct: 1175 KNREYTKK-RYLNA 1187


>gi|237716960|ref|ZP_04547441.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405729|ref|ZP_06082279.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294644469|ref|ZP_06722230.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806819|ref|ZP_06765645.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|229442943|gb|EEO48734.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356604|gb|EEZ05694.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292640191|gb|EFF58448.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294445989|gb|EFG14630.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1314

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGF--MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            ++L+VD +  +    +  F   G+   +  A    EA +      +P+ +V D  M  + 
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSH-VPDIIVSDVMMPRMN 1114

Query: 61   E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   +++    + + V  L    D +  I+G + GA+ +L KPF  E L   +R   
Sbjct: 1115 GYKLCKTIKEDINISHIPVILLTARDDRQSQISGYKNGADGYLSKPFEVEMLMELIRNRL 1174

Query: 119  QMQKSKDENQFLDA 132
            + ++   + ++L+A
Sbjct: 1175 KNREYTKK-RYLNA 1187


>gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA +    E   N +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++ +   T++ + +L  +   +  I G  +G + ++ KPF+   L   +  + + 
Sbjct: 63  -GAIKGIKKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
 gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+       V R    + G+ V       +A      E+  + +V+D  + G+  F
Sbjct: 2   RVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRA-TEIAYDAIVLDLMLPGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L   VD +  I G  AGA+ +L KPF+   L   +R L + 
Sbjct: 61  EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 118


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 239

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +      + GF+V  A +  +  +   +    + +V+D  + G   
Sbjct: 6   TKVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQ-MDRLIERENFHLMVLDLMLPGEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     D+ +  L  + D    I G   GA+ ++ KPFN   L   ++ + +
Sbjct: 65  LSICRRLRQKEN--DIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILR 122

Query: 120 MQKSK 124
            +  +
Sbjct: 123 RRAKE 127


>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 271

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   ++  P+ +V+D  +  +   
Sbjct: 46  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTA-RDFRPDAVVLDMMLPDMDGL 104

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 105 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 164

Query: 123 SKDENQFLDAI 133
           + D  +  D++
Sbjct: 165 AAD--RRSDSV 173


>gi|331000912|ref|ZP_08324549.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Parasutterella excrementihominis YIT
           11859]
 gi|329569871|gb|EGG51628.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Parasutterella excrementihominis YIT
           11859]
          Length = 235

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62
           +L+VD    +R++        GF V  A+   +A E   K    P+ +++D  M  +   
Sbjct: 6   ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMPEIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + ++++   +DV V  L  + +   +I G R GA+ F+ KPF  E L   +R + +  K
Sbjct: 66  -SMLKRLRKSSDVPVIILSAKDERPTVIEGFREGADDFVSKPFYIEELMERIRAVLRRGK 124

Query: 123 SKD 125
           ++ 
Sbjct: 125 TRS 127


>gi|298384668|ref|ZP_06994228.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298262947|gb|EFI05811.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1420

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +R   R +  +  + V EA +  EA          ++++ D  M  +   
Sbjct: 1168 SILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNP-IDFIISDLMMPVMDGI 1225

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V++    + +    L  +   E  +   R G + +LLKPF+   L   ++ + + 
Sbjct: 1226 ELSRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1285

Query: 121  QKSKDENQFLD 131
            +K       LD
Sbjct: 1286 RKRYQRKFTLD 1296


>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    VR             V  A S  +  E   +    + +V+D  + G+ 
Sbjct: 1   MARVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLAR-FAADVVVLDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +   +  L    D   ++ G  AGA+ +++KP   + L   +R + 
Sbjct: 60  GFEVCRRIRAASSTS---IVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides sp. D2]
 gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1360

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1165

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1226 QQEKRKQE 1233


>gi|237713735|ref|ZP_04544216.1| LOW QUALITY PROTEIN: two-component system sensor histidine
            kinase/response regulator [Bacteroides sp. D1]
 gi|262409359|ref|ZP_06085902.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp.
            2_1_22]
 gi|229446182|gb|EEO51973.1| LOW QUALITY PROTEIN: two-component system sensor histidine
            kinase/response regulator [Bacteroides sp. D1]
 gi|262352811|gb|EEZ01908.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp.
            2_1_22]
          Length = 1205

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  EA      E  P  ++ D  M  +  
Sbjct: 940  RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 997

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 998  DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1057

Query: 120  MQKSKD 125
             +    
Sbjct: 1058 NRALLR 1063


>gi|258406362|ref|YP_003199104.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
 gi|257798589|gb|ACV69526.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
          Length = 464

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EG 58
           M ++L+VD    +R V        G     A +  +A    +   + + +++D  +  E 
Sbjct: 1   MATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGV-DLVLLDVRLGQEN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  VRQ     D+ V  +    D    +   + GA+ ++ KPF+ + L   +    
Sbjct: 60  GVDLLRLVRQN--WADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSL 117

Query: 119 QMQKSKDENQFLD 131
           +  + ++EN++L 
Sbjct: 118 KTSRLQEENRWLK 130


>gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 1048

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L D +  +R     L       V        A E   K    + L+ D  M  +   
Sbjct: 618 RIVLADDNADMRAYAERLLGR-DHQVVAVGDGAAALEALRKAPA-DLLLTDVMMPVLDGI 675

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR  P    V V  L      E  + G  AGA+ +L+KPF+   L+  +R   ++
Sbjct: 676 ALTRAVRADPALRTVPVIMLSARAGAEAGVEGLEAGADDYLVKPFSARELQARVRANLEL 735

Query: 121 QKSKDENQ 128
            + + E Q
Sbjct: 736 SRLRAEAQ 743



 Score = 39.8 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGF 26
              +L+VD    VR V   L  + G+
Sbjct: 1000 TRILVVDDDPQVRAVAVTLLEELGY 1024


>gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G ++GA+ +L+KPF    L   +  + + 
Sbjct: 61  TLCKRLREDARL-DTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRR 119

Query: 121 QK 122
            +
Sbjct: 120 SQ 121


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  V +    +  +      +  EA    +++   +++++D  +  +  
Sbjct: 6   KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQS-FDFVILDLMLPDLSG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  +V+    I G   GA+ ++ KPF+ + L   +R + +
Sbjct: 65  EEICKRIRLQ---SQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMR 121

Query: 120 MQKSK 124
              ++
Sbjct: 122 RTNNE 126


>gi|163848634|ref|YP_001636678.1| metal dependent phophohydrolase [Chloroflexus aurantiacus J-10-fl]
 gi|222526570|ref|YP_002571041.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Chloroflexus sp. Y-400-fl]
 gi|163669923|gb|ABY36289.1| metal dependent phophohydrolase [Chloroflexus aurantiacus J-10-fl]
 gi|222450449|gb|ACM54715.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Chloroflexus sp. Y-400-fl]
          Length = 357

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    VR +   L      +V  A S          E LP+ +++D  M  +  F
Sbjct: 7   NVLVIDDDPNVRDILSSLLKRERCVVRTAASGQIGIAAARSE-LPDLILLDVMMPDLDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
                +R+ PL  +V +  +    D    + G +AGA+ FL KP     LR  +R    +
Sbjct: 66  SVCRMLREDPLTAEVPIIMITALDDRASRLEGVKAGADEFLSKPVELSELRLRVRTMQRI 125

Query: 118 PQMQKSKDENQFLDA 132
            + ++  +E +   A
Sbjct: 126 NRYRRLIEERERAAA 140


>gi|298385839|ref|ZP_06995396.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298261067|gb|EFI03934.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1376

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F+D  F V   ++  E ++      +P+ +V D  M  +    
Sbjct: 1110 LLIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQAL-NRIPDIIVSDIMMPVMDGIT 1167

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L    
Sbjct: 1168 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1227

Query: 121  QKSKDENQF 129
            +K   + Q 
Sbjct: 1228 KKLIAQFQQ 1236


>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    +  + R    + G+ V  A++  E  E   K  + + L++D  + G+   
Sbjct: 4   RLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDF-KMKMYDLLIVDIMLPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   +DV +  +         I G + GA+ ++ KPF+   +   +  L + 
Sbjct: 63  SLCQSIRWV---SDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRR 119

Query: 121 QKSKDENQFLDAI 133
            K  + ++  + I
Sbjct: 120 YKRMNSSEEQEEI 132


>gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        G  V        A E        + +V+D  + G     
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGK-AMERALVAARIDLIVLDLMLPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              RQ+   +D+ V  L    D    + G   GA+ +L KPF+   L   ++ + +  +S
Sbjct: 66  LC-RQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124


>gi|253569176|ref|ZP_04846586.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841195|gb|EES69276.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1376

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F+D  F V   ++  E ++      +P+ +V D  M  +    
Sbjct: 1110 LLIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQAL-NRIPDIIVSDIMMPVMDGIT 1167

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L    
Sbjct: 1168 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1227

Query: 121  QKSKDENQF 129
            +K   + Q 
Sbjct: 1228 KKLIAQFQQ 1236


>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
 gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 3/130 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +  +      +  + +++     +A   C +E   +  ++D  M G+
Sbjct: 1   MKTKILVVDDEKEIADLVELYLKNENYEIYKFYDPLQAL-ACIEEQPVDLAILDVMMPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    +         V  L  +V+    I G   GA+ ++ KPF+   +   ++   +
Sbjct: 60  DGFALCAKIRDKY-TFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLR 118

Query: 120 MQKSKDENQF 129
                +E + 
Sbjct: 119 RYTCYNEGRQ 128


>gi|148652854|ref|YP_001279947.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571938|gb|ABQ93997.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 231

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  +       F   G+ +  A +         +    + +++D  + G+ 
Sbjct: 1   MHKILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTY-DVILLDVMLPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  L     V  L         +AG  +GA+ +L+KPF+   L   +R L 
Sbjct: 60  GTQLCKALRE-KLHNKTPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALI 118

Query: 119 QMQKSK 124
           +  + +
Sbjct: 119 RRHQGE 124


>gi|34498960|ref|NP_903175.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34104809|gb|AAQ61166.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 402

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+ S   R        + G+    AT+  EA E+C +  +P+ +++D  M  +  
Sbjct: 18  TTILLVEDSATNRYFIEQFIQELGYRCASATNGVEAVEYC-RNQVPDLVLMDIIMPEMDG 76

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R++     V + +L    + E +++G +AG + +L KP + + L   +    +
Sbjct: 77  LQATTELRRLFGEHWVPIIFLTSLNELESVVSGLKAGGDDYLAKPVSFDLLSAKIHVFLR 136

Query: 120 MQKSKDE 126
           + + +++
Sbjct: 137 IAQMQNQ 143


>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
 gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato Max13]
 gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato K40]
 gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|29348458|ref|NP_811961.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340362|gb|AAO78155.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1376

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  ++K     F+D  F V   ++  E ++      +P+ +V D  M  +    
Sbjct: 1110 LLIVEDNEDIQKYIAESFSDS-FEVITGSNGEEGKQQAL-NRIPDIIVSDIMMPVMDGIT 1167

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                +++    + + V  L  +   +    G   GA+S+L KPF+   LR  +  L    
Sbjct: 1168 LCRQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1227

Query: 121  QKSKDENQF 129
            +K   + Q 
Sbjct: 1228 KKLIAQFQQ 1236


>gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 1   MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + + G   G + +L KPF+   L   +R L + 
Sbjct: 60  GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+++    + +         G+ V +A       E  E     + +++D  +  +  
Sbjct: 3   QTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETG-RFDLILLDVMLPKLNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   + V +  L         ++G  +GAN ++ KPF  E L   +R   +  
Sbjct: 62  -TEVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNT 120

Query: 122 KSKDENQFLDA 132
                 + L A
Sbjct: 121 APLSSTEVLSA 131


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+      +  +A +    E   + +++D  +  + 
Sbjct: 1   MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSED-FDAILLDLMLPDLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++       +  +         ++G   GA+ +++KPF  E L   +R + + 
Sbjct: 60  GL-EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118

Query: 121 QKSKD 125
            K + 
Sbjct: 119 VKIEK 123


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    + +V +      G+    A +     E   KE   + +++D  +  + 
Sbjct: 1   MANILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKF-KENHWDLVLLDVMLPELS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R     T   V  L         ++G   GAN ++ KPF  E L   +R   + 
Sbjct: 60  GLEVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRT 119

Query: 121 QKSKDE 126
            +S  E
Sbjct: 120 VQSGTE 125


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 3/123 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + +  +  F   G+ V          +    E   + +++D  + G+
Sbjct: 1   MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEAL-EGDYDLVLLDIMLPGI 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++   +D+ V  L  + + +  + G   GA+ ++ KPF+ E L   +R   +
Sbjct: 60  DGF-EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALR 118

Query: 120 MQK 122
            +K
Sbjct: 119 KKK 121


>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 236

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVL 60
            ++L+V+    +R+         G+ V EA +   A +  E         ++D  + G+ 
Sbjct: 3   KTILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ      + +  L         + G   GA+ ++ KPF+   L   +  L 
Sbjct: 63  GFAVCRELRQKSKT--LGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALY 120

Query: 119 QMQKSKD 125
           +    + 
Sbjct: 121 RRLNLEA 127


>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
 gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      GF V               E   +  ++D  + G+ 
Sbjct: 1   MSRILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAED-FDLFILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKRIREK---KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 223

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA    E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIE-QKEFDIILLDVMMPSMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 62/127 (48%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +K+  +
Sbjct: 119 SRKASKK 125


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    + +         GF V       E  E    E   + +++D  +     +
Sbjct: 4   RILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPW-DLILLDVMLPSLNGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         +  +         + G   GA+ +++KPF  E L   +R L + 
Sbjct: 63  EVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119

Query: 121 QKSKDENQFL 130
              +   Q L
Sbjct: 120 VHPESGGQVL 129


>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R++ ++     G+ VF A    EA      E   +  V+D  M  + 
Sbjct: 1   MIHILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARL-AEEQIHLAVVDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      D  V  L  +        G   G + +L KPF  + L F ++ L 
Sbjct: 60  GYQLCEEIR---RYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALL 116

Query: 119 QMQKSKDENQ 128
           +  +  + ++
Sbjct: 117 RRYQMVNADK 126


>gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGV 59
           M  +L+ +    +R+         G+ V +     +A +  E+ E   +  ++D  M G+
Sbjct: 1   MKKVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +     + + +  L  +      I+   +GA+ ++ KPF+   L   +  + +
Sbjct: 61  DGMQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 238

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            SLL+VD    +R      F   G+ V  A+    A E    +  P+ +V+D  M  +  
Sbjct: 12  RSLLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADP-PDAIVLDVMMPELDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +G    V  L         +AG  AGA+ +L+KPF    L   MR L +  
Sbjct: 71  VEVCRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRS 130

Query: 122 K 122
           +
Sbjct: 131 E 131


>gi|209547395|ref|YP_002279313.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538639|gb|ACI58573.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 2099

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD           +    G  V  AT+  EA +    E     +++D  M G+  +
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMRVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R  P    + +  L  +           AGA+ +L KP N E L  A+R     
Sbjct: 2040 ETMQVIRSEPRFRRLPILALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    +A     ++  P  + +D  +  +L   
Sbjct: 1713 LLVVEDDAHYARVLVDLARDSGFKVLVAMRGSDALSLA-QDYRPAAISLDIFLPDMLGWT 1771

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             ++ ++Q P    + V  +      E    G   GA +F+ KP   E L      ++   
Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1828

Query: 119  QMQKSK------DENQFLD 131
            Q ++        +E + L 
Sbjct: 1829 QPRRKHLLLVEDNEAERLS 1847



 Score = 74.5 bits (183), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LLLV+ +   R     L       +    S  EA     ++  P+ +V+D S+  +  
Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQDP-PDCVVLDLSLPDMSG 1891

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R      +V V          +  A   + A S ++K   + E L  
Sbjct: 1892 FDVLEQIRDDAEIGEVPVVVFTGRELSPEEDATLHSMARSVVVKGVESPERLLD 1945


>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 236

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      GF V  A S  EA E   +   P+  ++D  M G+  
Sbjct: 9   TRVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKA-RSFQPDAFILDVMMPGMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +    G +  V YL  +   E  I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 68  YELLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 241

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G  V  A    +A +   ++   + +V+D  M G    
Sbjct: 6   TILVVDDHRDIRDLVGRYLQEHGLRVLLA-DGGDAMKRQLRQHSVDLVVLDIMMPGDDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +   T++ V  L    +    I G   GA+ +L KPFN   L   ++ + +   
Sbjct: 65  TLC-RYLREHTELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLRRTT 123

Query: 123 SKDENQ 128
           +    +
Sbjct: 124 ALPPQR 129


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R +        G+ V +  +  +A EF +   + + LV+D  M G+ 
Sbjct: 1   MKHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEV-DLLVLDIMMRGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  VR     ++V + ++    +    I G   GA+ +L KPF+   L   ++ + 
Sbjct: 60  GLDLCKKVRM---TSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNIL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRTNA 121


>gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 235

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++  +  +  G+ V  AT   +A E      +P  +++D  M  +   
Sbjct: 12  RVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVART-YMPELVLLDIMMPHLDGI 70

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +P     ++ YL    +    +A    GA+ ++ KP     L   +  L + 
Sbjct: 71  EAGRQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRR 130

Query: 121 QKSKD 125
           +  K 
Sbjct: 131 EAQKA 135


>gi|300776266|ref|ZP_07086124.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501776|gb|EFK32916.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 234

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+    + K+    F +  F V  A       +   +    + +V D  +    
Sbjct: 1   MPHILLVEDDDRLSKLIAKGFQEAQFEVTVAYDGNSGMKLALQNH-FDLIVTDIVLPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LEF   ++ +    D+ V  L      +  + G  AGA+ +L KPF    L   ++ L 
Sbjct: 60  GLEFCNEIKALK--PDLPVIMLTALGTTDDKLEGFDAGADDYLTKPFEMRELVARIKVLL 117

Query: 119 QMQKSKDENQFL 130
           +    +   + L
Sbjct: 118 KRFSQQRHQKVL 129


>gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56']
 gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56']
          Length = 270

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +           GF V  A+   +      ++  P+ +++D  +     
Sbjct: 45  KKILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGV-LLARQEKPDAILLDLMLPDTNG 103

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L         I G  AGA+ ++ KPF+   L   +R L +
Sbjct: 104 FKVCEDLRRWDAF--VPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFR 161

Query: 120 MQKSKDE 126
                 E
Sbjct: 162 RAARPAE 168


>gi|293556317|ref|ZP_06674900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291601517|gb|EFF31786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
          Length = 160

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHTIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
 gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
          Length = 223

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA                + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV--NDSVDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++       V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GM-ETLKKLREKWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDENQ 128
             +  +++
Sbjct: 118 TGNHTQSK 125


>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ V EA    EA    E E   + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 MESR 120


>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|217978617|ref|YP_002362764.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217503993|gb|ACK51402.1| GAF sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 1792

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           +    G  V  A++  EA E          +++D  M  +  
Sbjct: 1672 RTVLLVDDDARNIFALSGVLERRGMSVLTASNGGEAIESLRARPEIEIVLMDVMMPDMDG 1731

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     VR  P    + +  L              AGA+ +L KP +RE L   +R    
Sbjct: 1732 YETMQRVRTEPAFRRLPIVALTARAMKGDREKCIDAGASDYLAKPVDREQLLAVLRMWLH 1791

Query: 120  M 120
             
Sbjct: 1792 R 1792



 Score = 45.6 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 41   CEKELLPNYLVIDESM--EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGAN 98
                  P  ++++  +        +A ++Q      + V         E        GA 
Sbjct: 1443 LADLYRPAAILLNLGLADPPGWNVLAQLKQSIATRHIPVA---ATGAIEDRHYALSRGAF 1499

Query: 99   SFLLKPFNRETLRFAMREL 117
             FL  P     L+ A+  L
Sbjct: 1500 DFLEAPVRPGDLKAALMRL 1518


>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 220

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  R      G+ V  AT   +   F       + +++D  +  V   
Sbjct: 2   RVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDG-HFLGSTESYDAIILDLGLPEVDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G D  V  L     +   +AG  AGA+ +L KPF  E L   +R L +   
Sbjct: 61  TVLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 123 SKDENQFLD 131
               ++ + 
Sbjct: 121 GNASSELIA 129


>gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
 gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans
           621H]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+    +  +  +     G+ V  A     A     +   P+ +V+D  + G   L+
Sbjct: 13  VLLVEDDPALLLMTCYNLEQRGYRVETAEDGEAAL-LVLETARPDAVVLDWMLPGLSGLD 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P   DV V  L      +  I G   GA+ +L+KP + +TL   +R L +  
Sbjct: 72  VCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRRH 131

Query: 122 KS 123
           +S
Sbjct: 132 QS 133


>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|271963478|ref|YP_003337674.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
 gi|270506653|gb|ACZ84931.1| GAF sensor hybrid histidine kinase [Streptosporangium roseum DSM
            43021]
          Length = 1468

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD          ++    G  V  A +  +  E   +    + +++D  M  +  
Sbjct: 1348 RKVLVVDDDVRNVFALTNILELHGMQVLYAENGRKGIEVLSRNEDVDLVLMDIMMPEMDG 1407

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R+MP   D+ +  +  +           AGA+ ++ KP + + L   +++  
Sbjct: 1408 YAATAAIRKMPRFADLPIIAVTAKAMQGDRDKTLAAGASDYVTKPVDAQELLSRIQQWM 1466


>gi|229587824|ref|YP_002869943.1| osmolarity response regulator [Pseudomonas fluorescens SBW25]
 gi|229359690|emb|CAY46538.1| DNA-binding response regulator [Pseudomonas fluorescens SBW25]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    FN  G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  TACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
            
Sbjct: 131 L 131


>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
 gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + ++        G+ VF+A +  E  +   +E   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEE-IHLVLLDVMMPGMNGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +++ V  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  EMCRKIRES---SNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120

Query: 121 QKSKDEN 127
               + N
Sbjct: 121 YTQLNPN 127


>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
 gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
          Length = 1325

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLV+ +  + +V   + +   + V  A +  E  +   +E  P+ ++ D  M  +  
Sbjct: 1067 QTILLVEDNEDMLQVLVDMLSPL-YKVKIAMNGQEGLDKALEES-PDLIISDVMMPVMSG 1124

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++     + + V  L      +  + G + GA+ ++ KPFN + L   +  + +
Sbjct: 1125 TEMCMKLKTNFNSSHIPVILLTALTSDDSKLKGVQCGADDYVEKPFNHKILLGKIANILR 1184

Query: 120  MQKSKDENQFLD 131
             +K   +   +D
Sbjct: 1185 SRKLLVQKFQID 1196


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M +    +L+VD    +  V +       + VF A +  EA E   +    +++++D  +
Sbjct: 1   MKTDGRNILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNS-IDFVILDLML 59

Query: 57  EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R     + V +  L  +VD    I G   GA+ +++KPF+ + L   +
Sbjct: 60  PDLSGEEICKKIRIE---SQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARV 116

Query: 115 RELPQM 120
             + + 
Sbjct: 117 NAIWRR 122


>gi|67924947|ref|ZP_00518336.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67853208|gb|EAM48578.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 122

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D S   R++   L  + GF V  A    EA E   K L P+ +++D  M  + 
Sbjct: 1   MPTILVADDSPAQRELIAGLLKENGFSVATAIDGAEALEKL-KSLAPDLIILDVVMPNLN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P    + V     +        G + GA+++++KPF  + L   +++L 
Sbjct: 60  GYQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIVKPFPHDELLGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 705

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    VR +   L  +  +    A S   A E  E    P+ +++D  M G+   
Sbjct: 7   TILIVDDDVHVRDLLEVLLQNQNYRTLTAESGEVALEMVELH-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L         ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKANKSTANIPIIMLSALDQQSARLSGLEAGAEEYLNKPVDSSELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|329938393|ref|ZP_08287818.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302366|gb|EGG46257.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 289

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 9/123 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL++    V          FGF V  A +  E           + +++D  +  +   
Sbjct: 2   RVLLIEDDDRVAGPLTEGLGRFGFTVDRARTGAEGLAA----GACDMVLLDLGLPDMDGI 57

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V +  +    D    + G   GA+ ++ KPF    L   +R + + 
Sbjct: 58  EVCRALRLR---SQVPIIMITARSDEVDRVLGLEIGADDYVSKPFGVRELIARIRAVTRR 114

Query: 121 QKS 123
            ++
Sbjct: 115 SQA 117


>gi|329957698|ref|ZP_08298173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522575|gb|EGF49684.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1347

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R+   +  +   F + EA +  +A E  +   + + ++ D  M  +   
Sbjct: 1100 TILIVEDNEELRQYLSNGLSVQ-FNLIEAENGQKALELLKDNDV-DLILSDVMMPIMDGV 1157

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + VY L  +VD +  + G + GA+ ++ KPF+ E L   +  + + 
Sbjct: 1158 KLCKLIKQNLRTCHIPVYLLSAKVDIKYQLKGLQVGADDYIPKPFSMEVLVAKILNMLRT 1217

Query: 121  Q 121
            +
Sbjct: 1218 R 1218


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +++L +      ++ R         V  A +   A         P+ L++D  + G+   
Sbjct: 13  NIVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAE-PDLLILDVMLPGMNGL 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +D+ +  L      + ++ G   GA+ ++ KP++   L   +R L + 
Sbjct: 72  TVCRTIRAS---SDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRR 128

Query: 121 QKSKD 125
             +  
Sbjct: 129 TNAAK 133


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+++    + +         G+ V  +    E  E    E     +++D  +     +
Sbjct: 4   RVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEW-GLILLDVMLPSLNGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R +       +  +         + G   GA+ +++KPF  E L   +R L + 
Sbjct: 63  EVCRRIRAV---KQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119

Query: 121 QKSKDENQFL 130
             +  E + L
Sbjct: 120 VHAPAEERLL 129


>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 240

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF V +A    EA E+ E     + L++D  M G+ 
Sbjct: 10  MQTILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGN-QVDLLIVDVMMPGLD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 69  GIRTTLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRR 127


>gi|237727119|ref|ZP_04557600.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229433975|gb|EEO44052.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1467

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1330 RKLFRE 1335


>gi|197105366|ref|YP_002130743.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196478786|gb|ACG78314.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 249

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G+ V  A    E  E   +    + +V+D  + G    
Sbjct: 17  RILMVDDDPGIRDVVSDFLGRHGYKVETAADAPE-MERVLERGPVDLIVLDVMLPGEDGL 75

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L    +    I G   GA+ +L KP N   L   +R + +  +
Sbjct: 76  AICRRLTTADNAPPIIMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARVRAVLRRAE 135

Query: 123 SK 124
            +
Sbjct: 136 QR 137


>gi|162453232|ref|YP_001615599.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161163814|emb|CAN95119.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 376

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +   R + +    D G+ V  A +  E  +  E    P+ +++D  M G+  F
Sbjct: 9   RVLVVDDNEQNRALAQATLEDDGYEVVLAVTGEEGIQQFELHK-PDCVLLDVRMPGMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +R +P G    + +L    D +   +  RAG + FL KP     L   ++   ++
Sbjct: 68  AVCSRIRGLPEGASTPIVFLTALRDVDTFDSALRAGGDDFLTKPIRPSELLVRVQAALRL 127

Query: 121 QKSKDENQ 128
           ++   E +
Sbjct: 128 RRLGAELR 135


>gi|146340880|ref|YP_001205928.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193686|emb|CAL77703.1| Putative Sensor histidine kinase with a GAF domain and multiple HAMP
            and Response regulator receiver domains (modular protein)
            [Bradyrhizobium sp. ORS278]
          Length = 2117

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           +    G  V  AT+  EA +  +       +++D  M  +  
Sbjct: 1997 KTVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDLVQGNPEIAIVLMDIMMPQMDG 2056

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               I  +RQ P+   + +  L  +           AGA+ +L KP N E L  A+R    
Sbjct: 2057 YQTIGVIRQSPIFARLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLLAIRMWLH 2116

Query: 120  M 120
             
Sbjct: 2117 R 2117



 Score = 91.0 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A+   EA E   K+  P  + +D  +  +L   
Sbjct: 1731 LLVVEDDPHYARVLIDLARDKGFKVLIASRGAEALELA-KQYQPAAISLDVFLPDMLGWT 1789

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             ++ ++  PL   + V  +      E        GA SF+ KP   E +  A+ ++ +  
Sbjct: 1790 VLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGAFSFVSKPTTTEGVSAALTQIKEYA 1846

Query: 122  KSKDE 126
            K + +
Sbjct: 1847 KPRRK 1851



 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V+ +   R   R L       +  A +   A +        + +V+D  +  +  
Sbjct: 1851 KRLLIVEDNDAERMSIRQLLEHDDIEIVGADTGAAALDTLRSGPC-DCVVLDLRLPDMSG 1909

Query: 62   F--IAHVRQMPLGTDVFVYYLLME--VDFEKMI 90
            F  +  +R       V V           E   
Sbjct: 1910 FDVLEQLRTDETLAGVPVVVFTGRELSAEEDAE 1942


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +      +  F V          +  +K+     +++D  +  + 
Sbjct: 1   MYKILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNY-QLIILDIMLPAMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R++    +V V  L  +      ++G R GA+ +L KPF        ++ L 
Sbjct: 60  GYDVLTEIRKL---NNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLI 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580]
 gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
 gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
          Length = 224

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLVD  + +  +         +   +A +  EA +   K    + +++D  M  +   
Sbjct: 2   NVLLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLI-KMRNFDLVILDIMMPEMDGW 58

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   T + V  L  +   + ++ G   GA+ +L KPF+ + L   +  + + 
Sbjct: 59  TVCKEIRRL---TSIPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVLLAKIEAVLRR 115

Query: 121 QKSKDENQF 129
            +   E +F
Sbjct: 116 TRRFHEIRF 124


>gi|46579830|ref|YP_010638.1| sigma-54 dependent transcriptional regulator/response regulator
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602701|ref|YP_967101.1| Fis family transcriptional regulator [Desulfovibrio vulgaris DP4]
 gi|46449245|gb|AAS95897.1| sigma-54 dependent transcriptional regulator/response regulator
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562930|gb|ABM28674.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris DP4]
 gi|311234165|gb|ADP87019.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris RCH1]
          Length = 459

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL++D     R + R +  D G+ V EA S  E  E    E   + +++D  M G+ 
Sbjct: 1   MKHLLVIDDEPGHRLMVRAVMEDVGWHVVEAGSGEEGLELLVHE-QVHVVLLDMRMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R + +   + V  L         +   + GA  +L KP + E L   + +  + 
Sbjct: 60  GQETLARILEIQPGLPVVMLTAYGTVGSAVEAMKCGAFDYLTKPADNEELVAVLEKAWEH 119

Query: 121 QKSKDENQFL 130
           ++   EN+ L
Sbjct: 120 RRLVVENEEL 129


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL++    + +         G+ V        A      E   +  V+D  +  +   
Sbjct: 2   RLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSEN-FDLAVLDLGLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G+++ V  L      E  IAG  AGA+ +L+KPF+   L+  +R L +   
Sbjct: 61  EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120

Query: 123 SKDEN 127
            + + 
Sbjct: 121 GRAQM 125


>gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606]
 gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606]
          Length = 319

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|198276106|ref|ZP_03208637.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
 gi|198270918|gb|EDY95188.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
          Length = 1237

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            LL V+ +  +R V + +  D  F + EA+S   A    E +   + +V D  M G+  F 
Sbjct: 985  LLFVEDNDDLRNVMKRILTDH-FDLTEASSGETALLQLE-DKKIDIIVSDIMMPGMNGFE 1042

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++      + V  L  +      I G   GA+ ++ KP N   L   +  L + +
Sbjct: 1043 LCKKIKERFETKHIPVILLTAKTSDMDRITGYEVGADGYICKPLNISVLLAKIENLLKKK 1102

Query: 122  K 122
            +
Sbjct: 1103 E 1103


>gi|187479256|ref|YP_787281.1| osmolarity two component response regulator [Bordetella avium 197N]
 gi|115423843|emb|CAJ50394.1| osmolarity two component response regulator [Bordetella avium 197N]
          Length = 233

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++     N  G+    A    +          P+ LV+D  + G   
Sbjct: 6   TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASD-LASRITRYAPDLLVLDRMLPGGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    G D+ V  L    +    I G  AGA+ +L KPF+   L   +  + + +
Sbjct: 65  ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124

Query: 122 K 122
           +
Sbjct: 125 R 125


>gi|85059514|ref|YP_455216.1| putative two-component regulator protein [Sodalis glossinidius str.
           'morsitans']
 gi|84780034|dbj|BAE74811.1| putative two-component regulator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 168

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D     R+  R    + G++V  A +  E     E E   + +++D  M  +  +
Sbjct: 2   KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAE-EYYYDLILLDVMMPELNGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +    D  V +L  +   +  I G   GA+ +L+KPF+   L   +R   +   
Sbjct: 61  -EVMKTLDSLLDTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRRGM 119

Query: 123 SKDENQFL 130
           +    + L
Sbjct: 120 NGKREELL 127


>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 230

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  + +       F V  A      R    +E   + +++D  + GV  
Sbjct: 3   KKILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEED-FDLIILDLMLPGVDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     VR      +  +  +  + D    I G   GA+ ++ KPF+   L   ++    
Sbjct: 62  FEICRQVRDQ---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLA 118

Query: 120 MQKSK-----DENQFLD 131
             +       +EN+ ++
Sbjct: 119 RYERLIGSNVEENEIIE 135


>gi|315920858|ref|ZP_07917098.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313694733|gb|EFS31568.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1352

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +K+ +P+ ++ D  M
Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1204 NNLVNSRRLLQE 1215


>gi|298675227|ref|YP_003726977.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288215|gb|ADI74181.1| response regulator receiver protein [Methanohalobium evestigatum
           Z-7303]
          Length = 352

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ +   ++  +    A S  +A +   +E LP+ +++D  M  +   
Sbjct: 228 KILIVDDEPDIPELIKLSLSNEPYDFIVAYSGEQAVDMTLQE-LPDLILLDIMMPDMDGY 286

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  + +     D+ +  +  +   E  + G   G + ++ KPF+   L   ++ + + 
Sbjct: 287 EVVEELNKDKSTRDIAIIMVSAKTRVEDKLKGMELGIDDYISKPFDERELNARIKMVMKR 346


>gi|295681071|ref|YP_003609645.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295440966|gb|ADG20134.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  + R   E    P+ +V+D  + G     
Sbjct: 7   VLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRATLE-NGAPDLIVLDLMLPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V +  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKFRAVPILMLTARSEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|265750403|ref|ZP_06086466.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263237299|gb|EEZ22749.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1467

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1330 RKLFRE 1335


>gi|262405544|ref|ZP_06082094.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294644578|ref|ZP_06722332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294809610|ref|ZP_06768303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|262356419|gb|EEZ05509.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292640131|gb|EFF58395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294443222|gb|EFG11996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1352

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +K+ +P+ ++ D  M
Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1204 NNLVNSRRLLQE 1215


>gi|260172565|ref|ZP_05758977.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1324

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +K+ +P+ ++ D  M
Sbjct: 1058 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1115

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1116 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1175

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1176 NNLVNSRRLLQE 1187


>gi|237710730|ref|ZP_04541211.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229455452|gb|EEO61173.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1467

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1330 RKLFRE 1335


>gi|237720524|ref|ZP_04551005.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|293371540|ref|ZP_06617958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298480439|ref|ZP_06998636.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|299146986|ref|ZP_07040053.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|229450275|gb|EEO56066.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|292633488|gb|EFF52053.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298273260|gb|EFI14824.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298514871|gb|EFI38753.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1352

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +K+ +P+ ++ D  M
Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1204 NNLVNSRRLLQE 1215


>gi|237716769|ref|ZP_04547250.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229442752|gb|EEO48543.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1344

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +K+ +P+ ++ D  M
Sbjct: 1078 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1135

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1136 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1195

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1196 NNLVNSRRLLQE 1207


>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
 gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
          Length = 229

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 117 SRYERLSGN 125


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++    +    +    +  F V  A+      +        + L++D  + G+   
Sbjct: 2   RLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEY-DLLLVDWMIPGISGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G DV + +L  +   E ++ G  AGAN ++ KPF  E L   +R   + + 
Sbjct: 61  EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRG 120

Query: 123 SKD 125
           S+ 
Sbjct: 121 SES 123


>gi|160884022|ref|ZP_02065025.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483]
 gi|156110752|gb|EDO12497.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483]
          Length = 1352

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 2    DSL-----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
              +     L+V+ +  ++++   +F  F + V  A+   EA E  +K+ +P+ ++ D  M
Sbjct: 1086 KRIEDAKMLIVEDNESIKQMLVGIFETF-YQVSTASDGVEALEMIQKD-MPSIILSDVVM 1143

Query: 57   EGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        ++       + V  L      E  I G + GA+ ++ KPFN   L    
Sbjct: 1144 PRMSGTELCKQIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1203

Query: 115  RELPQMQKSKDE 126
              L   ++   E
Sbjct: 1204 NNLVNSRRLLQE 1215


>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 252

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             L+VD    +  V         F V  A +  +A     +E+ P+ +V+D  + G+   
Sbjct: 18  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALA-REIDPDVVVLDLGLPGMDGI 76

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +D +V  L         I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 77  EVCRQLR---TFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 133

Query: 121 QK 122
            +
Sbjct: 134 PR 135


>gi|28868014|ref|NP_790633.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851250|gb|AAO54328.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331018350|gb|EGH98406.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 254

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R           F V  A       +   ++   + +V+D  +     F
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      ++ V  L         + G   GA+ +L KPF    L   +  + + +
Sbjct: 71  ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128


>gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 238

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +         G+ V    S   A E          +++D  + G+  F 
Sbjct: 8   ILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERL-TYDRFALIILDVMLPGIDGFT 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R       V +  L    D    I G   GA+ +L KPFN       +R + + 
Sbjct: 67  VCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRR 123


>gi|299142597|ref|ZP_07035728.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
 gi|298576032|gb|EFI47907.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
          Length = 1340

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +R     +F    F V +A    E  +    +++P+ ++ D  M  +    
Sbjct: 1079 LLVVEDNPDIRTYIADVF-ANDFDVRQAADGQEGLQMAL-DIIPDMIISDVMMPNMDGNE 1136

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V++    + V +  L  +   E    G  +GA+S+L KPF+   LR  +  L + +
Sbjct: 1137 LCRKVKENVRTSHVPIILLTAKDGNEAKEEGYESGADSYLTKPFSSSLLRTRVHNLVEQR 1196

Query: 122  KSKDENQFLDAI 133
                  Q L A+
Sbjct: 1197 ------QRLLAV 1202


>gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
 gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D22]
          Length = 1358

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEEN-PNLIISDIMMPKVDG 1163

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1224 QQEKRKQE 1231


>gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 240

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA      +   + +V+D  M  + 
Sbjct: 10  MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKN-IDLVVLDIMMPIMD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + + G   G + +L KPF+   L   +R L + 
Sbjct: 69  GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128

Query: 121 QK 122
            K
Sbjct: 129 YK 130


>gi|189466428|ref|ZP_03015213.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM
            17393]
 gi|189434692|gb|EDV03677.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM
            17393]
          Length = 1396

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+V+    +R        +  +M     +  EA         P+ ++ D  M  +  
Sbjct: 1135 RHVLVVEDDEEIRHYICRELGNDFYMTECC-NGKEALASILYHT-PDLIISDVMMPEMDG 1192

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +RQ      + +  L      E  + G   GA+++L+KPF+ E LR  +  + +
Sbjct: 1193 LTLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNIIR 1252

Query: 120  MQKSKD 125
             ++   
Sbjct: 1253 RREQLR 1258


>gi|121535346|ref|ZP_01667158.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thermosinus carboxydivorans Nor1]
 gi|121306038|gb|EAX46968.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thermosinus carboxydivorans Nor1]
          Length = 361

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++      ++   L    G+ V    S  E     E    P+ +++D  +  +  F
Sbjct: 6   KILVIEDDARSARLMEALLMPAGYEVQTVGSGAEGLAAIET-FKPHLVLLDIMLPDIDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++  P G  V V  +    D +    G   GA+ F++KP  +  L   +R L ++
Sbjct: 65  EVLRRLKAEPAGQAVPVVMVTALADAKSRARGFELGADDFIIKPVEKIELYARVRSLLRI 124

Query: 121 Q----KSKDENQFLDA 132
           +    + +++NQ L A
Sbjct: 125 KAYYDQLQEQNQRLAA 140


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 234

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLE 61
            +LLV+    +    +   N   ++V       +A  + E        +++D  + G+  
Sbjct: 2   RVLLVEDEPDLGAAIKRTLNQQKYLVDWVMDGNDAWTYLENSSAQYTVVILDWMLPGISG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + +  L  +   E  +AG  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRALQRRS 121

Query: 122 KSKDENQF 129
                 Q 
Sbjct: 122 PHLQPQQL 129


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+    +    ++     GF      S      F  ++ + + +++D  +  +
Sbjct: 1   MKPRVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTV-DLIILDIGLPDM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R+        V +L    D    + G   GA+ ++ KPF+   L   +R +
Sbjct: 60  SGMELCKEIRKS---HSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAV 116

Query: 118 PQMQKSKD 125
            +    +D
Sbjct: 117 LRRTHVRD 124


>gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 243

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDES 55
             +LLV+     R    +     GF V EA     A E  E    P      + +++D  
Sbjct: 8   TRILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLM 67

Query: 56  ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +           +R     + V V  L  +      I G   GA+ ++ KP++   L   
Sbjct: 68  LPRLDGTGVCTRIR---RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLAR 124

Query: 114 MRELPQMQKSKD 125
           ++ + +  ++  
Sbjct: 125 LKAVLRRSRAAA 136


>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 234

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    ++++        G   F A    +A     K    + +V+D  M  + 
Sbjct: 13  MANILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDAL-MLLKNHPMDLMVLDIMMPHLD 71

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F      R+M     + +  L      +  + G   GA+ ++ KPF+   L      L 
Sbjct: 72  GFSVCKMAREMSS---LPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALL 128

Query: 119 QMQKS 123
           +   S
Sbjct: 129 RRSSS 133


>gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 10  MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + + G   G + +L KPF+   L   +R L + 
Sbjct: 69  GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128

Query: 121 QK 122
            K
Sbjct: 129 YK 130


>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|224540722|ref|ZP_03681261.1| hypothetical protein BACCELL_05636 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517665|gb|EEF86770.1| hypothetical protein BACCELL_05636 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1301

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            LLL +    +R+   +  +   + V       +A E   +E+ P+ ++ D  M      E
Sbjct: 1059 LLLAEDDKDMREYLMNSLSSE-YKVIGVPDGGKALEMA-REINPDIIISDIVMPVLEGDE 1116

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                ++     + + V  L    + E +I G  AGAN +++KPF+   L+  +R + Q  
Sbjct: 1117 LCRILKSSVDTSHIPVILLTALSERENIIFGLEAGANDYIIKPFDLSVLKVRIRNILQNR 1176

Query: 121  QKSKD 125
            Q  +D
Sbjct: 1177 QHLRD 1181


>gi|187933115|ref|YP_001885875.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721268|gb|ACD22489.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+VD    + +       + G+ +F+A    +A +  ++E   + +++D  M  
Sbjct: 1   MKNYNILVVDDDKTITEAIGVYLVNEGYKIFKAYDGIQALKVIDEED-IHLVILDIMMPN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++       + +  L  + +    I G   GA+ ++ KPFN   L   +    
Sbjct: 60  MNGTRTTIKIREE-RQIPIIMLSAKSEDTDKILGLNLGADDYITKPFNPLELIARVNSQI 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%)

Query: 8   DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVR 67
           +    +R          GF V EA+   EA          +  ++D  + G+  F    R
Sbjct: 2   EDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGFEVCRR 61

Query: 68  QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126
                  + + +L  +V  +  +     GA+  + KPF+   L   ++ L +      E
Sbjct: 62  IRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNVHRE 120


>gi|301062173|ref|ZP_07202858.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300443726|gb|EFK07806.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 175

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD + +V K+ RHL     ++V  A +  EA +    E  P+ +V D  M  +  
Sbjct: 54  TKILVVDDNLVVLKLLRHLLESQDYLVITAQNGVEALKLASTED-PDMVVTDYVMPEMDG 112

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +++     ++ +  L  + + E  + G  AGA+ +L KP  R+     +  L +
Sbjct: 113 VALIKELKRRKETRNIPIMMLTAKDEEESELEGLDAGADDYLTKPIARKRFLARVARLLK 172

Query: 120 M 120
            
Sbjct: 173 R 173


>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G++  ++++  EA E  +   + + +++D  M  +   
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNV-HLIILDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++       + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  EACMKIREE-KSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRR 120


>gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 230

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    + +  R   +  G+ V  A S  EA      +  P+ +V+D  +  +  
Sbjct: 6   TRVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMA-ADHKPDVVVLDLGLPDMTG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +  +       V  L    D    +    AGA+ ++ KPF  +     +R   +  
Sbjct: 65  -IEVLAGLRGWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRG 123

Query: 122 KSKDE 126
            +  E
Sbjct: 124 ATAAE 128


>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
 gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|17230613|ref|NP_487161.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132216|dbj|BAB74820.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 382

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L++D       V   L ++  + +    S  EA         P+ +++D  M G+   
Sbjct: 5   SILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNL-FQPDLILLDVMMPGMDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ MP    V +  +      E +    ++GA+ F+ KP N   LR  +  + ++
Sbjct: 64  EVCQRIKAMPQWQPVPIIMVTALTAKEDLARCLQSGADDFISKPINALELRARLHSMLRI 123

Query: 121 QKSKDENQFLDAI 133
           ++  D+ Q L  +
Sbjct: 124 KQQYDKIQTLSNL 136


>gi|319902883|ref|YP_004162611.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417914|gb|ADV45025.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 1338

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R+  R+  ++  + +   ++   A      E LP+ ++ D  M  +   
Sbjct: 1083 KILIVEDNDELREYLRNTLSET-YHIQVCSNGKMALAIV-NEYLPHLIISDIMMPEMRGD 1140

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + +  L      + +I G + GA+ +++KPFN   LR  +  L   
Sbjct: 1141 ELCQTLKNNIETSHIPIILLTALNADKNIIEGLQTGADEYIVKPFNIGILRATIANLLNN 1200

Query: 121  QKSKD 125
            +    
Sbjct: 1201 RALLR 1205


>gi|212691048|ref|ZP_03299176.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855]
 gi|212666280|gb|EEB26852.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855]
          Length = 1350

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+          +   E+ +  EA E       P+ ++ D  M  +   
Sbjct: 1091 KVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIF-NKTPDLVISDVMMPEMDGL 1148

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA++++ KPF+ E LR     L + 
Sbjct: 1149 TLCHKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIRS 1208

Query: 120  MQKSKD 125
             ++ ++
Sbjct: 1209 RERLRN 1214


>gi|150003331|ref|YP_001298075.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931755|gb|ABR38453.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1345

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1    MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
            M   +LLLV+ +  +R           F V  A +  EA +        + ++ D  M  
Sbjct: 1078 MKGYTLLLVEDNESMRSFIFERLEAL-FTVETAVNGQEALDILRSNH-IDLVISDIMMPV 1135

Query: 59   V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            +   E    ++       + V +L  + D E  I G + GA +++ KPF+   L+  +  
Sbjct: 1136 MNGYELCKEIKADIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKTQILS 1195

Query: 117  LPQMQKSKDE 126
            L   ++ + E
Sbjct: 1196 LLSNRRKERE 1205


>gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
 gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
          Length = 245

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +        GF    A    E +    K+ + + +++D  M G     
Sbjct: 7   ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAV-DLVILDIMMPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              RQM   + + +  L    +    I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 66  LC-RQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQ 123


>gi|86157482|ref|YP_464267.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773993|gb|ABC80830.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 481

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R+  R +    G+ V EA S  +  E  + E + +  V D  + G+   
Sbjct: 7   SILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPV-DLGVFDIRLPGMDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L  D+ V  +    D   ++   + GA  F  KP +R+ +  ++R     + 
Sbjct: 66  ALLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 125

Query: 123 SKDENQFLDA 132
            + + Q L A
Sbjct: 126 LEGKVQALSA 135


>gi|44888876|gb|AAS48175.1| DNA-binding response regulator [Pseudomonas fluorescens]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    FN  G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  TACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|118579419|ref|YP_900669.1| two component sigma54 specific Fis family transcriptional regulator
           [Pelobacter propionicus DSM 2379]
 gi|118502129|gb|ABK98611.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Pelobacter propionicus DSM 2379]
          Length = 455

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +R +   + +  G+    A +  E      +  + ++++ D  M  +  
Sbjct: 5   KHILIIDDEENLRHMLSVMLSRQGYRADCAANGVEGLAAL-RGTVYDFILCDIRMPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+    +  +G+   +  +      +  +   + GA  ++ KPF ++ +   +R+  +
Sbjct: 64  KAFLQAALRDQVGS--PIIMMSAYGTVDTAVECMKLGAYDYISKPFKKDEIVMVLRKAEE 121

Query: 120 MQKSKDENQFLDA 132
            ++ KDEN  L A
Sbjct: 122 RERLKDENSRLRA 134


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + +++D  + G+ 
Sbjct: 4   MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMS 62

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 63  GTDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|333024076|ref|ZP_08452140.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
 gi|332743928|gb|EGJ74369.1| putative sensor histidine kinase/response regulator [Streptomyces sp.
            Tu6071]
          Length = 2013

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +  + G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1893 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1952

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+MP    + +  L  +           +GA+ ++ KP + + L  A+ +  + 
Sbjct: 1953 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRT 2012

Query: 121  Q 121
            +
Sbjct: 2013 K 2013


>gi|310642055|ref|YP_003946813.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309247005|gb|ADO56572.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCE-AREFCEKELLPNYLVIDESME 57
           M+   +L+V+    +RK+        G+    A +      E   ++  P+ +++D  + 
Sbjct: 1   MNKPFILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSRQ--PDLMILDLGLP 58

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +      ++++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R  
Sbjct: 59  DMDGV-DIIKKLREWSNMPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVS 117

Query: 118 PQMQK 122
            +  +
Sbjct: 118 LRRIR 122


>gi|284051622|ref|ZP_06381832.1| response regulator receiver Signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570873|dbj|BAI93145.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 369

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R+    L     F V  A +     +   K  LP+ ++ D  M    
Sbjct: 1   MAKVLVIEDEETIRENLVELLEIEDFDVISAENGKLGVQQAHKH-LPDLILCDVMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R       +   +L  + D + +  G   GA+ +L KP + E L  A+    
Sbjct: 60  GYGVLKELRSHMETATIPFIFLTAKADRDDLREGMNLGADDYLTKPCSMEELLTAIAIRL 119

Query: 119 QMQKSKDENQFLD 131
           + Q    +   + 
Sbjct: 120 EKQSLIKQQSEIQ 132


>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHTIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|225851028|ref|YP_002731262.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Persephonella marina EX-H1]
 gi|225645278|gb|ACO03464.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Persephonella marina EX-H1]
          Length = 354

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD     R + R     +GF V E  +  EA +    E   + +++D  M  +  F
Sbjct: 8   TILIVDDDPQNRMLLRFFCKKWGFDVVECKNGAEAVKEA-NEKDIDIILMDLMMPKLDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++       + V  L    D E  I G   GA+ F  KP N   L+  ++   ++
Sbjct: 67  SALEVLKNNEKTKYIPVIILTAAEDTESRIKGIELGADDFFTKPINIHELKLRLKNSLKL 126

Query: 121 Q 121
           +
Sbjct: 127 K 127


>gi|119488955|ref|ZP_01621890.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454911|gb|EAW36054.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 262

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC--EAREFCEKELLPNYLVIDESMEG 58
           M  +L++D    + ++        G+ V +A      +A    +       L +      
Sbjct: 1   MPRILVIDDDPAIAELVAINLEMAGYEVSQAEDGIKGQAL-ALQLLPDLIILDLMLPKVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    +D+ +  L      +  + G  +GA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTSDIPIVMLTALGQTQNKVEGFNSGADDYLTKPFELEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+++    V  + R    + G+    A                + ++ D  +  + 
Sbjct: 1   MYSILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L      +  + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 60  GFELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKR 119

Query: 121 Q 121
           +
Sbjct: 120 K 120


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         GF V +A    EA E  +   + N +++D  M G+ 
Sbjct: 1   MQKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEV-NLMIVDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118


>gi|260776785|ref|ZP_05885679.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606451|gb|EEX32725.1| chemotaxis regulator CheY [Vibrio coralliilyticus ATCC BAA-450]
          Length = 119

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    +A          + ++ D +M  + 
Sbjct: 1   MTKILAVDDSVSIRQMVSHTLRDAGYEVETANDGRDALNKVASSK-FDVVISDVNMPNMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R  P    V +  L  E   EK   G  AGA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFELVKALRDKPQYKFVPILMLTTETSTEKKQQGKSAGATGWLVKPFNPETLLKTLKRVI 119


>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLLV+    +R   +      G  V  A S  EA     K + P+ +V+D  + GV 
Sbjct: 1   MPSLLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATY-KTVRPDLIVLDVMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRQIRRTE---QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVL 116

Query: 119 QMQKSK 124
           +  + +
Sbjct: 117 RRGERE 122


>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 118 RRIEVHEE 125


>gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1]
 gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1]
          Length = 239

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDRLLTRENFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|186477531|ref|YP_001859001.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193990|gb|ACC71955.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 245

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        G+           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCRFLQSNGYDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   ++ + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIIGLSLGADDYLTKPFDPRELLARIQTVLRRR 121


>gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+   +A +  EA          + +++D  M  + 
Sbjct: 1   MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++ +   + V +  +  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  G-IEVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDENQ 128
            + +  N+
Sbjct: 119 SQQQVTNE 126


>gi|26986989|ref|NP_742414.1| osmolarity response regulator [Pseudomonas putida KT2440]
 gi|148545517|ref|YP_001265619.1| osmolarity response regulator [Pseudomonas putida F1]
 gi|24981604|gb|AAN65878.1|AE016215_13 DNA-binding response regulator OmpR [Pseudomonas putida KT2440]
 gi|148509575|gb|ABQ76435.1| Two-component response regulator OmpR [Pseudomonas putida F1]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +   +  + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLQREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q
Sbjct: 71  SACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129


>gi|301059863|ref|ZP_07200754.1| putative Nitrogen assimilation regulatory protein [delta
           proteobacterium NaphS2]
 gi|300446013|gb|EFK09887.1| putative Nitrogen assimilation regulatory protein [delta
           proteobacterium NaphS2]
          Length = 480

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L++D    +R     L  + G+ V  A S     +  E    P+ +++D  + G+ 
Sbjct: 1   MSTILIIDDDDQLRASFEKLLKEEGYRVETAPSGETGLKRIEALP-PDLVILDMRLPGIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   L   + V  +      E  I   + GA  ++LKPF+   +   +R+    
Sbjct: 60  GLETFKRINALDPKLPVIIMTAFGTTETAIEATKMGAFDYILKPFDIPEMLDVIRKALDA 119

Query: 121 QK 122
            +
Sbjct: 120 AR 121


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +  + R      GF V EA +  +A     KE  P+ +++D  + G+  +
Sbjct: 15  SILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEP-PDAMILDVMLPGMDGY 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +GT+  V +L      E  + G   G + ++ KPF+ E +   +R + +   
Sbjct: 74  TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133

Query: 123 SKD 125
             D
Sbjct: 134 KSD 136


>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  V +       ++V+E  S   A    E  L P+ +++D  +  +  
Sbjct: 4   TKILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFE-NLQPDLIILDLMLPDLSG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +D+ +  L  +   + ++ G   GA+ +L+KPF+   L   +  L +
Sbjct: 63  EDVCKTIRKK---SDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLR 119

Query: 120 MQKS 123
             KS
Sbjct: 120 RSKS 123


>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R +   + N+     F A S  EA +   +E   + +++D  M    
Sbjct: 1   MTTVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREK-IDLVLLDVMMPHED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R M   ++V + +L      +  + G   G + +++KPF  + L   +  + 
Sbjct: 60  GFVVCQSIRAM---SNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVL 116

Query: 119 QMQKS 123
           +   +
Sbjct: 117 RRSGA 121


>gi|94264857|ref|ZP_01288632.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93454678|gb|EAT04943.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D   ++RK+       +G+    A     A E  ++   P   +ID  M G+ 
Sbjct: 1   MK-ILVADDDPVIRKMLTTQLKGWGYQPLTAVDGQAAWEIMQQPDAPPLALIDWMMPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+ P  +  ++  L  +     +I G  AGA++++ KP++   L   +R   
Sbjct: 60  GLTLCRRIREQPGPSAPYLIMLTTKSTPADVINGLEAGADAYITKPYHATELHARIRVGI 119

Query: 119 QMQKSK 124
           +  + +
Sbjct: 120 RNIEQR 125



 Score = 82.9 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG---FMVFEATSVCEAREFCEKELL-PNYLVIDESM 56
           M  +LL++       + RH   +     F +  A S+  A      E + P+ +++D ++
Sbjct: 146 MPLVLLIEDDPGETLLIRHQLTERNVDAFALHSADSMAAATRLLTGEGVVPDVVILDLNL 205

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +  I  V +     D  +  L    + E       AGA+ FL K  +  TLR A+R 
Sbjct: 206 PDSVG-IRTVERCRSLCDSPIVVLSGNDEPEARRLALEAGADDFLAKGGDGPTLRRALRY 264

Query: 117 LPQMQKSKDENQFLDAI 133
                +   + +   A+
Sbjct: 265 AIIRHRRDSDMRLAAAV 281


>gi|282859444|ref|ZP_06268549.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282587672|gb|EFB92872.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 230

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G++V  A S  EA          N L++D  ME +  F
Sbjct: 7   KILVVDDEKDLCEILKFNLEAEGYIVDTANSGEEALTM--DISKYNLLMLDVMMEEISGF 64

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ + +L        +I G + GA+ ++ KPF+   +   ++ + + 
Sbjct: 65  ALAKKLKDDIETKDIPIIFLTARTTENDIITGLKLGADDYISKPFSIREVILRIKVVLRR 124

Query: 121 QKSKDENQ 128
              + + +
Sbjct: 125 SYDEKQPE 132


>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
 gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|213971081|ref|ZP_03399201.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384196|ref|ZP_07232614.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060880|ref|ZP_07252421.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302132855|ref|ZP_07258845.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924189|gb|EEB57764.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 254

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R           F V  A       +   ++   + +V+D  +     F
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      ++ V  L         + G   GA+ +L KPF    L   +  + + +
Sbjct: 71  ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128


>gi|77918660|ref|YP_356475.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544743|gb|ABA88305.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Pelobacter carbinolicus DSM
           2380]
          Length = 734

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--I 63
           +VD    +R + R      GF V E+    E      K + P+ +++D  M  +  F   
Sbjct: 14  IVDDDPAMRLLTRATLEQAGFSVIESADGSEGVSLFRK-MRPDLVLLDVIMPQMDGFNVC 72

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R++P G ++ +  L    D E +     AGA  F+ KP N   LR+ +  + +  + 
Sbjct: 73  RLLRKLPEGKEIPIIMLTGMDDVESVRKAFDAGATDFIGKPINWLLLRYRVMHMLRSARL 132

Query: 124 KDENQFLDA 132
            ++ +   A
Sbjct: 133 CEDLRVSQA 141


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|83956294|ref|ZP_00964735.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83839515|gb|EAP78696.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R          G     A S  E  +        + +V+D  M G     
Sbjct: 7   ILVVDDHDEIRNSVSSYLERNGMRTSVAESAAE-MDAQRARHSFDLIVLDVMMPGEDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           A  R         V  L    + +  I G   GA+ +L KPFN   L   +R + +  +
Sbjct: 66  ACKRLRQE-CGTPVLMLTALGEDDDRIEGLEGGADDYLSKPFNPRELLARIRAIMRRSE 123


>gi|332519639|ref|ZP_08396103.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044198|gb|EGI80392.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 234

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V R       + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLRDYLMMNDYEVVHAKNGMEGFEKFKKDD-FDLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           DV + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNADVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124

Query: 122 KSK 124
            ++
Sbjct: 125 ATE 127


>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     EK  + + +V+D  M  +   
Sbjct: 5   TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEV-HLVVLDIMMPKIDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKIREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 234

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    +         + G+ VF+A +  E  E  EKE   +  ++D  M  +   
Sbjct: 5   SILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEK-IHLAIVDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  V  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKLREQH-DFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRR 120


>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +    +      GF V  A    EA  + E E   + +++D  +      
Sbjct: 2   RVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAE-ETSYDVILLDVMLPVLNGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+  +     +  L    +    I G   GA+ ++ KPF+ + L   +R L + 
Sbjct: 61  EVCRRLREREVW--TPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRR 118


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R + +       F    A           K    + +++D  +  + 
Sbjct: 1   MAKVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMF-KNNSFDIVLLDVMLPDMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+      + V  +    +    + G   GA+ +++KPF+   +   ++ + 
Sbjct: 60  GWNVLKTIRESSK---IPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAIL 116

Query: 119 QMQK 122
              K
Sbjct: 117 SRSK 120


>gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [uncultured Desulfobacterium sp.]
          Length = 242

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++ R+     G+ V  A S  EA +    E   + +V+D  +   G +
Sbjct: 16  RILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEP-FDLIVLDLMLPGIGGI 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R +    ++ +  L  + +   +I+G    A+ ++ KPF+ + L   +  + + 
Sbjct: 75  DVAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILRR 133


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A S  EA     +    N L++D  M  +  F
Sbjct: 7   RILVVDDEQDLCEILKFNLETEGYAVDTANSAEEAMNM--ELTSYNLLLLDVMMGAMSGF 64

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + + +L         + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 65  AMAKKLKEESATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRR 124

Query: 121 QKSKDENQF 129
               + ++ 
Sbjct: 125 TAETENHEQ 133


>gi|265752871|ref|ZP_06088440.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
 gi|263236057|gb|EEZ21552.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_33FAA]
          Length = 1357

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGGDVAMS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+ P    + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + +  R   N  G+ V  A     A +    E  P+ +V+D  +  +   
Sbjct: 8   TVLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAV-AETKPDVVVLDLGLPDLDG- 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +   T V +  L    D    +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 66  TEVIAGLRGWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRR 123


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYT-YEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   +     +  F      +A     +E+ P+ +++D  + G+  
Sbjct: 3   TRILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATF-REVNPHLVLLDLMLPGLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     +DV V  L    D + ++AG  AGA+ ++ KPF  + L   +R   +
Sbjct: 62  VEICRLIRAE---SDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLLV+    + +V +       ++V  AT      EF E     + +++D  +  + 
Sbjct: 1   MK-LLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEM-FEYDLIMLDLMLPKLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F    R+        +  +  + D    +    AGA+ +L+KPFN + L   +R L 
Sbjct: 59  GIQFCQQRRKQGDL--TPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118



 Score =  111 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            L++VD    + ++ R     +GF +       +  E  E+   P+ L++D  M     +
Sbjct: 509 KLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTN-PDLLILDVEMPEISGI 567

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
           +    VR  P   ++ V +L      + +  G +AGA+ ++ KP     L   +
Sbjct: 568 DLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621



 Score = 68.7 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LL+VD+   + +        +G     A ++ +A +       P+ +++D      G   
Sbjct: 385 LLIVDNDFALAQAIATQAKIWGLKSEIACNLSQA-KRAIASFQPDVILLDLFFPDTGENG 443

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                    L   +    L  + DF   +  AR G   FL KP   E +  A+ ++ Q
Sbjct: 444 LELLQELSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPERIVEAIVKVVQ 501


>gi|332882614|ref|ZP_08450226.1| fused DNA-binding response regulator in twresponse
           regulator/sigma54 interaction protein [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332679414|gb|EGJ52399.1| fused DNA-binding response regulator in twresponse
           regulator/sigma54 interaction protein [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 387

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+++    +R+V   +  +    + VFEA+   E  E  +K+   + ++ D  M  
Sbjct: 1   MTKILIIEDESAIRRVLSKILQEESKEYEVFEASDGIEGLEKLKKDDY-DLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  +V    +    D E  +   R GA  ++ KP +   L   +R   
Sbjct: 60  MDGLEVLTEAKKIKPEVPFVMISGHGDLETAVNAMRLGAYDYISKPPDLNRLLNTVRNAL 119

Query: 119 QMQKSKDENQFLD 131
             QK   EN+ L 
Sbjct: 120 DKQKLVVENKHLK 132


>gi|293603634|ref|ZP_06686055.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818070|gb|EFF77130.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++     N  G+    A    +          P+ LV+D  + G   
Sbjct: 9   TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDATD-LSSRITRYAPDLLVLDRMLPGGDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    G D+ V  L    +    I G  AGA+ ++ KPF+   L   +  + + +
Sbjct: 68  ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 127

Query: 122 K 122
           +
Sbjct: 128 R 128


>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   ++R +        G+ V  A     A+E   K   P  +++D  +  +
Sbjct: 1   MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLK-YSPCLVILDLMLPKI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R      +V +  +  +   +  I+G + GA+ ++ KPF+   L   +  +
Sbjct: 60  SGEEVCQWIRAQERN-EVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAV 118

Query: 118 PQM 120
            + 
Sbjct: 119 LRR 121


>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 850

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+   I   + R +    GF V  A    EA E  +     + +++D  +      E
Sbjct: 728 ILIVEDEKINLMLIRRMLQKKGFNVLTAMDGREALEVLKSNQDISLILMDVMVPVHDGYE 787

Query: 62  FIAHVRQ--MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +R+        V +  +    D         AG N++L KP +   L   +R    
Sbjct: 788 LTRMIRKGDFDGLKQVPIVAVTALADAASRQHCFEAGMNAYLSKPVDNSELMKMIRRYLA 847

Query: 120 MQK 122
             +
Sbjct: 848 RSQ 850


>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 263

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEA---REFCEKELLPNYLVIDESMEG 58
           + +L+V+      +         GF V  A++   A         E   + +++D  + G
Sbjct: 4   NRILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPG 63

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       R    G  + V  L      +  + G  AGA+ +L KPF    L   +R L 
Sbjct: 64  IDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALL 123

Query: 119 QM 120
           + 
Sbjct: 124 RR 125


>gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA E  E +  P+ L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEK-ESKFNPDLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G++ ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIRRESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LKRVK 121


>gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 245

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 2/121 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLVD    +R +   L  + G+ V  A    EA   C   L  + +++D  M G     
Sbjct: 26  ILLVDDDKRIRDLLSRLLKENGYRVTTAAHAAEA-RTCLTGLEFDLIILDVMMPGETGLE 84

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             V  +   + V +  L    +    IAG  AG + +L KPF    L   +  + +    
Sbjct: 85  LAV-SLREESSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAILRRGNQ 143

Query: 124 K 124
           +
Sbjct: 144 Q 144


>gi|29827626|ref|NP_822260.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29604726|dbj|BAC68795.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1424

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +  +  +          +++D  M  +  
Sbjct: 1304 RTVLVVDDDARNLFALSGILELHGFKVLHAENGRKGVDTLLAHPEICLVLMDVMMPEMDG 1363

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R M   TD+ V  +  +          ++GA+ ++ KP +   L   +R   
Sbjct: 1364 YAATTEIRSMSQYTDLPVVAVTAKAMPGDREKALQSGASDYVTKPVDANDLIACVRRWL 1422


>gi|146552|gb|AAA24042.1| cytoplasmic protein (kdpE) [Escherichia coli]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 245

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +        +  G+   +A +  EA    E+    + +++D  M  + 
Sbjct: 15  MHTILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQND-IHLILMDIMMPELD 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I    ++  G++V +  L  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 74  G-IRATAKLREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRR 132


>gi|332531237|ref|ZP_08407150.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
 gi|332039344|gb|EGI75757.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
          Length = 247

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 4/123 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        G     A    + R       + + +V+D  + G    
Sbjct: 6   RILVVDDDPDIRALLAEYLGGQGLRADCAADGRQMRATLRAAPV-DLVVLDLMLPGEDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       V V  L    D    I G   GA+ +L KPF    L   +R + + 
Sbjct: 65  SLLRWLR-DSEWAHVPVLMLTARGDNVDRIIGLEMGADDYLPKPFEPRELVARIRAVLRR 123

Query: 121 QKS 123
             +
Sbjct: 124 THA 126


>gi|312879123|ref|ZP_07738923.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782414|gb|EFQ22812.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 476

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     R+V   L     + +  A+S  +A E   +   P+ +++D  M G+  F 
Sbjct: 9   VLIVDDEPSWREVLEVLLLPEEYSLRFASSGIQALEEA-RGRCPDLVLLDVMMPGMDGFQ 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+     +V V  +    D +  IAG  AGA+ F+ KPF+R  LR  +R + ++ 
Sbjct: 68  VCRALREQRETGEVPVVMITALEDRQSRIAGVEAGADDFVSKPFDRMELRARIRTILKLD 127

Query: 122 KSKD 125
           + + 
Sbjct: 128 RFRR 131


>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +LLLVD    +  +        G+   +  S  EA ++  +    + +++D  M  + 
Sbjct: 1   MYTLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHA-DLVLLDVMMPELD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  +    +   ++ G + GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWETCRRIRS---FSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
 gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
          Length = 224

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +    +      GF V  A    EA +   +      +V+D ++  +   
Sbjct: 2   RILLVEDHPELSHWLQKALTHVGFAVDVANDGIEA-DHLLQHEKYALVVLDVALPRLNGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V  L    D    + G  +GA+ +L KPF  + L   +R L + 
Sbjct: 61  ELLARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRR 118


>gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    +R++      + GF   EA    EA        + + +V+D  M  + 
Sbjct: 10  MPTILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNV-DLVVLDIMMPIMD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ +  L    +  + + G   G + +L KPF+   L   +R L + 
Sbjct: 69  GWTLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128

Query: 121 QK 122
            K
Sbjct: 129 YK 130


>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 239

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +V+    ++++ R    + G+ V          E  E++  P+  V+D  + GV  
Sbjct: 7   KLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKK-PDLFVLDIMLPGVDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++      + +  L  + D    + G   GA+ ++ KPF+       ++   +
Sbjct: 66  FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 125

Query: 120 MQKSKDEN 127
            Q    EN
Sbjct: 126 RQADSFEN 133


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LLV+    + +         G+ V  A    E           + L++D  + G   
Sbjct: 25  KKILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLA-TTDAFDVLLLDVMLPGING 83

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     + V +  +         +AG  AGA+ +++KPF  E L   +R + +
Sbjct: 84  IEICRRIRTQ---SQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILR 140

Query: 120 MQKSKD 125
              +++
Sbjct: 141 RATTQE 146


>gi|120610912|ref|YP_970590.1| response regulator receiver protein [Acidovorax citrulli AAC00-1]
 gi|120589376|gb|ABM32816.1| response regulator receiver protein [Acidovorax citrulli AAC00-1]
          Length = 140

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+VD    +R++ R    D G  + EA S   A      +  P+ +++D  M G  
Sbjct: 13  MKTVLIVDDHAEIRRLLRMTLEDQGVALHEAASGEAALAMARAQ-RPDLVLLDLMMPGSL 71

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R  P  +   V  L      +   AG +AGA+ F+ KPF+   L   +R L
Sbjct: 72  DGMEVCRRIRNDPDLSHTRVIILSARDGLQDRAAGMQAGASGFISKPFSPAYLAETVRRL 131


>gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M S   +L+VD    +R + +  F   G     A    E  E   +    + +V+D  + 
Sbjct: 1   MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTE-MEAVLRRAQVDLIVLDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   LE    +R         +  L    +    + G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGLELCRDLRAQYS---TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIR 116

Query: 116 ELPQMQKSKDENQ 128
            + +   + +  +
Sbjct: 117 AVLRRNGAAEPKR 129


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|330996319|ref|ZP_08320203.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329573369|gb|EGG54980.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1364

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE 61
             +L+V+    +R+     F+   + V E ++  EA ++  +     + +V D  M  +  
Sbjct: 1092 RILVVEDETAIRRYLHGEFSGE-YHVCECSNGQEAWDYIVQNVEKVDLVVSDVMMPVMDG 1150

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++       + V  L  + D    + G   GA++++ KPFN + LR     L +
Sbjct: 1151 IALCRNIKGSFNTNHIPVILLTAKSDDADRLEGLSIGADAYMSKPFNMDVLRQTAENLLK 1210

Query: 120  MQKSKD 125
             ++   
Sbjct: 1211 NKRRLQ 1216


>gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+D    +  V        G+    A           +   P+ +++D  + G+   
Sbjct: 13  KILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMA-RSFKPDIIILDVMLPGMDGI 71

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +AH+R+    ++V+V  L    +    I G   GA+ +L KPF+   L   ++   + 
Sbjct: 72  ELLAHLRRE---SNVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRR 128


>gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 224

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D    +  +    F   GF V  A +  EA +  EK+  P+ +++D +M G   L
Sbjct: 4   KILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALKQVEKQ--PDIILLDINMPGTDGL 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         + +L   ++    + G   G + +++KPF+   L   +R   + 
Sbjct: 62  EVCKRIR---DHISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHLRR 118

Query: 121 Q 121
           +
Sbjct: 119 E 119


>gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 234

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R       F V   +      E    E   + +++D  +    
Sbjct: 1   MKRILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAED-FDLILLDLMLPSAD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ     D  +  +    +    + G   GA+ +++KPF+   L   ++   
Sbjct: 60  GFAVCRAIRQK---KDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHI 116

Query: 119 QMQKSKDE 126
              +   +
Sbjct: 117 ARYERLTQ 124


>gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     +E  P+ +V+D ++  +   
Sbjct: 10  RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEA-REFQPDAVVLDVALPDMDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +V V +L      E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 69  TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 128

Query: 123 SKDENQ 128
           +    +
Sbjct: 129 AASAAR 134


>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA +  + E  P+ L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G++ ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LKRVK 121


>gi|26250678|ref|NP_756718.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           CFT073]
 gi|110644249|ref|YP_671979.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 536]
 gi|191172709|ref|ZP_03034247.1| transcriptional regulatory protein CpxR [Escherichia coli F11]
 gi|215489244|ref|YP_002331675.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218692197|ref|YP_002400409.1| DNA-binding transcriptional regulator CpxR [Escherichia coli ED1a]
 gi|227885347|ref|ZP_04003152.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 83972]
 gi|300975749|ref|ZP_07173165.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300986009|ref|ZP_07177684.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301048722|ref|ZP_07195731.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306813823|ref|ZP_07447999.1| DNA-binding transcriptional regulator CpxR [Escherichia coli NC101]
 gi|312969335|ref|ZP_07783537.1| transcriptional regulatory protein cpxR [Escherichia coli 2362-75]
 gi|331649764|ref|ZP_08350844.1| transcriptional regulatory protein CpxR [Escherichia coli M605]
 gi|26111109|gb|AAN83292.1|AE016770_92 Transcriptional Regulatory protein cpxR [Escherichia coli CFT073]
 gi|110345841|gb|ABG72078.1| transcriptional regulatory protein CpxR [Escherichia coli 536]
 gi|190907013|gb|EDV66614.1| transcriptional regulatory protein CpxR [Escherichia coli F11]
 gi|215267316|emb|CAS11765.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218429761|emb|CAR10585.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli ED1a]
 gi|222035625|emb|CAP78370.1| Transcriptional regulatory protein cpxR [Escherichia coli LF82]
 gi|227837723|gb|EEJ48189.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 83972]
 gi|300299468|gb|EFJ55853.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300306467|gb|EFJ60987.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300410237|gb|EFJ93775.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|305852821|gb|EFM53268.1| DNA-binding transcriptional regulator CpxR [Escherichia coli NC101]
 gi|307556055|gb|ADN48830.1| transcriptional regulatory protein CpxR [Escherichia coli ABU
           83972]
 gi|312285882|gb|EFR13800.1| transcriptional regulatory protein cpxR [Escherichia coli 2362-75]
 gi|312948488|gb|ADR29315.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315292748|gb|EFU52100.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|324006816|gb|EGB76035.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324012550|gb|EGB81769.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|331041397|gb|EGI13547.1| transcriptional regulatory protein CpxR [Escherichia coli M605]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A     A     +E  P+ +++D  +  V   
Sbjct: 23  RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSA-REFRPDAVILDIMLPDVDGL 81

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 82  SLLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 141

Query: 123 S 123
           +
Sbjct: 142 A 142


>gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli CNPAF512]
          Length = 234

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G       S  EA     +    + +++D  M  +   
Sbjct: 4   RILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGN-IDLIILDIGMPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + + + +L    +    I G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119

Query: 121 QKS 123
             +
Sbjct: 120 SGN 122


>gi|307720447|ref|YP_003891587.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978540|gb|ADN08575.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
          Length = 220

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++       F F V       +A    + E   + +++D ++ G+ 
Sbjct: 1   MQKILMIEDDLELAEILTEYLEQFEFEVITEDDPFKAVSILKLEP-FDLVILDLTLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +       D    I     GA+ +L KP++   L   +  + 
Sbjct: 60  GLEVCEAIRER---QDIPIIISSARSDVTDKIKALELGADDYLPKPYDPRELEARIHSVL 116

Query: 119 QMQKSKDENQ 128
           +  ++K E +
Sbjct: 117 RRYEAKSEEK 126


>gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1]
 gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1]
          Length = 319

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|157150116|ref|YP_001450468.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074910|gb|ABV09593.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    E  E  +K+ + + ++ D  M  +  
Sbjct: 3   KTILLVDDEVDILDIQKRYLLQAGYQVLVAHDGLEGLELFKKKSV-DLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYLAPDQPFLFTTAKTSEQDRIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
           +  DE + ++
Sbjct: 122 QRGDETEQIE 131


>gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492]
 gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA          N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM--DIGSYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      + + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKS 123
            + 
Sbjct: 123 TQQ 125


>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA +  + E  P+ L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G++ ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LKRVK 121


>gi|91790298|ref|YP_551250.1| adenylate/guanylate cyclase [Polaromonas sp. JS666]
 gi|91699523|gb|ABE46352.1| adenylate/guanylate cyclase [Polaromonas sp. JS666]
          Length = 561

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+ +  +R     L  D  + V  A++     +    E  P  +++D  M  +   
Sbjct: 29  RVLIVEDTADIRYFLETLLKDQ-YEVAAASAGETGLQMATGEPRPEIILLDVMMPDMDGY 87

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  + + P   ++ V +L           G   GA  ++ KP +   L   +R   + 
Sbjct: 88  EVMRQLAKDPRTAEIPVIFLTALGSVADEQKGLDLGATDYITKPISPPILLARVRLHLER 147

Query: 121 QKSKDENQFLDA 132
             +    + L  
Sbjct: 148 SANARRLKDLSE 159


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|319952421|ref|YP_004163688.1| histidine kinase [Cellulophaga algicola DSM 14237]
 gi|319421081|gb|ADV48190.1| histidine kinase [Cellulophaga algicola DSM 14237]
          Length = 1388

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL+V+ +  +R   R  F    + V  A    E  +   KE LP+ ++ D  M  +  F
Sbjct: 1140 TLLVVEDNAELRNYLRDEFKQQ-YKVLVAKDGQEGLQMA-KEFLPDVILTDVIMPEMDGF 1197

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++    + + +  L  +   +  I G   GA+++++KPF+   L   +++L   
Sbjct: 1198 TFCKNIKEDLRTSHIPLLMLTAKAKIDDRIEGIGLGADAYMVKPFDMRLLSLRLKQLITS 1257

Query: 121  QKS 123
            ++ 
Sbjct: 1258 RQL 1260


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+      +  +A +    E   + +++D  +  + 
Sbjct: 1   MPKILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSED-FDAILLDLMLPDLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++       +  +         ++G   GA+ +++KPF  E L   +R + + 
Sbjct: 60  GL-EIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118

Query: 121 QKSKD 125
            K + 
Sbjct: 119 VKIEK 123


>gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    + ++     ++ G+   +A    EA            L++D  M  +   
Sbjct: 9   KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDGM 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              V+++   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L +  K
Sbjct: 69  -QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTK 127

Query: 123 SK 124
            +
Sbjct: 128 MQ 129


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +V+D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEVDLMVLDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     GF V       EA E   +E  P+ L++D  + G   +
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EMRLQERTPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 ARPE 126


>gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 210

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+++    ++++     +  G+ V  A    E  +  ++    + +++D  M      
Sbjct: 4   SILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSY-DLVILDIMMPNLDGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V + +L    D    + G     + ++ KPF+   L   +  + + 
Sbjct: 63  GVCKMIRKSSS---VPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119

Query: 121 QK 122
             
Sbjct: 120 SN 121


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    +       F V           + E +   + +V+D  + G+   
Sbjct: 2   RILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSY-DLIVLDRMLPGLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G    +  L  +      + G  AGA+ +L+KPF  E L   +R L + 
Sbjct: 61  EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRR 118


>gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LL +   ++R   R      GF V EAT+  EA      E  P  +++D  M      
Sbjct: 7   RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTE-QPQLIILDLMMPRLTGF 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+  +   V +  L         +     GA+ +L KPF  + L   +R + + 
Sbjct: 66  EVCQRIREQSI---VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 SQ 124


>gi|85860311|ref|YP_462513.1| response regulator receiver domain-containing protein [Syntrophus
           aciditrophicus SB]
 gi|85723402|gb|ABC78345.1| response regulator receiver domain with sensory domain [Syntrophus
           aciditrophicus SB]
          Length = 596

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R +   L   + + +  AT+  EA E  +K + P+ +++D  M G+  F
Sbjct: 19  RILIVDDLPQERWMLGALLKSYDYELSYATNGHEALELAKK-INPDLILLDVMMPGMDGF 77

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R+ PL  +V +  +    + E    G   GA+ F+ KPF+R  L+  +R +
Sbjct: 78  EVCRRIRKTPLIAEVPIMMVTALNEAEVRRKGVEIGADDFISKPFDRAELQARVRNI 134


>gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +RK  R      G+ V EA S     +       P+ L++D  +  + 
Sbjct: 1   MSRILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAAC-PDLLILDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +  +    D+ +  L +       +     GAN ++ KPF    L   +R + +
Sbjct: 60  G-QEIISAVRQDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLR 117


>gi|15598388|ref|NP_251882.1| two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
 gi|107102722|ref|ZP_01366640.1| hypothetical protein PaerPA_01003788 [Pseudomonas aeruginosa PACS2]
 gi|116051181|ref|YP_789988.1| two-component response regulator GltR [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890616|ref|YP_002439480.1| two-component response regulator GltR [Pseudomonas aeruginosa
           LESB58]
 gi|254236153|ref|ZP_04929476.1| two-component response regulator GltR [Pseudomonas aeruginosa
           C3719]
 gi|254241879|ref|ZP_04935201.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192]
 gi|296388322|ref|ZP_06877797.1| two-component response regulator GltR [Pseudomonas aeruginosa PAb1]
 gi|313108507|ref|ZP_07794508.1| two-component response regulator GltR [Pseudomonas aeruginosa
           39016]
 gi|9949311|gb|AAG06580.1|AE004743_3 two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
 gi|1621045|gb|AAC44475.1| GltR [Pseudomonas aeruginosa PAO1]
 gi|115586402|gb|ABJ12417.1| two-component response regulator GltR [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126168084|gb|EAZ53595.1| two-component response regulator GltR [Pseudomonas aeruginosa
           C3719]
 gi|126195257|gb|EAZ59320.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192]
 gi|218770839|emb|CAW26604.1| two-component response regulator GltR [Pseudomonas aeruginosa
           LESB58]
 gi|310881010|gb|EFQ39604.1| two-component response regulator GltR [Pseudomonas aeruginosa
           39016]
          Length = 242

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V   +   + R+   +E   +  ++D  +     
Sbjct: 6   RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEA-SLAILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R       + +  L    D    + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  FSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|326385473|ref|ZP_08207112.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326210012|gb|EGD60790.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L V+    +R +      D+G+ V  A +  E     E +   + +V+D  + G
Sbjct: 1   MTTHSILFVEDDPALRLLTARALRDYGYDVRTAATGAEMWAMLETQPA-DLIVLDIMLPG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++   ++V V ++      E  + G   GA+ +L KPF    L   +  + 
Sbjct: 60  GNGL-ELLRRLRKQSEVPVIFVSARGSEEDRVLGLELGADDYLPKPFGTRELAARIAAVF 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 285

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A +   ++  P+ +V+D  +  +   
Sbjct: 60  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTA-RDFRPDAVVLDMMLPDMDGL 118

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E  IAG  AG + ++ KPF+ E +   +R L +   
Sbjct: 119 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 178

Query: 123 SKDENQFLDAI 133
           + D  +  D++
Sbjct: 179 AAD--RRSDSV 187


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 50/133 (37%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++L++    V    +    + G+ +  A       +  +     + +++D  +  + 
Sbjct: 1   MKKIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQAND-FDLVILDIMLPEMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      V + +L      E ++ G  +G + +L+KPF    L   ++ L 
Sbjct: 60  GLDVCKEIRK--TNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLL 117

Query: 119 QMQKSKDENQFLD 131
           +   +    +  +
Sbjct: 118 RRSNNNGPQEIAE 130


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +      L    GF         +A    ++ + P+ +++D  + G+ 
Sbjct: 1   MTHVLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDR-VSPDIVLLDLMLPGMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 + +   + V V  +         + G   GA+ ++ KP++   L   +R + + 
Sbjct: 60  G-TEICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118

Query: 121 QKSKDENQF 129
                E   
Sbjct: 119 GGDLAEEDL 127


>gi|226358131|ref|YP_002787870.1| histidine kinase, hybrid [Deinococcus deserti VCD115]
 gi|226319774|gb|ACO47768.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115]
          Length = 1644

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              +L+VD           +       V  A +  +A +  E+    + +++D  M     
Sbjct: 1524 KRVLVVDDDIRNIFALTAVLERHQMEVLTAENGRDAIQMLEQHPELDIVLMDVMMPELDG 1583

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    +RQ     ++ +  L  +           +GA+ ++ KP N   L   +R    
Sbjct: 1584 YETTRLIRQNRKWKNLPIISLTAKAMPGDREQSIESGASDYISKPVNTGQLLSLLRVWLS 1643

Query: 120  M 120
             
Sbjct: 1644 R 1644



 Score = 76.4 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +LL+V+     R+    L  +        +S  EA E   + +  + +V+D ++  +  
Sbjct: 1378 KNLLVVEDDGPQRQNIVDLIGNGDVKTTAVSSGAEALELLAR-VPFDCIVLDLNLPDMSG 1436

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118
             E +  ++Q P    + +     +    +     R  A S +LK   + E L   +    
Sbjct: 1437 FELMTTLQQTPSLRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFL 1496

Query: 119  QMQKS---KDENQFLD 131
               ++   + + Q L+
Sbjct: 1497 HRVEANLPEAKRQVLE 1512



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+       +   L  + GFM   AT   +A    +    P  + +D ++       
Sbjct: 1258 VLIVEDDPTYAGILLDLARERGFMGLIATRGDQALTLAQT-YRPAAITLDLTLPDTSGWA 1316

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118
             +  ++  PL   + V+ +      EK + G + GA   + K  +RE L  A   +    
Sbjct: 1317 VLDSLKHDPLTRHIPVHIISG---QEKSLVGRKLGALDHITKSGDREQLTAAFASLENFL 1373

Query: 119  QMQ 121
              +
Sbjct: 1374 ARR 1376


>gi|212694928|ref|ZP_03303056.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
 gi|212662488|gb|EEB23062.1| hypothetical protein BACDOR_04465 [Bacteroides dorei DSM 17855]
          Length = 1444

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1246

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1247 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1307 RKLFRE 1312


>gi|167764205|ref|ZP_02436332.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183]
 gi|167698321|gb|EDS14900.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183]
          Length = 1317

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+V+    + ++   +   F + V       EA    E    P+ ++ D  M  +    
Sbjct: 1071 VLVVEDEKNICELLCDIL--FEYTVRVTRDGIEALSEIE-HNHPDIIISDIMMPNMDGLT 1127

Query: 64   A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  +  +   E  I   + GA++++ KPF+ + +   +  L   Q
Sbjct: 1128 LINKLKSELKTSYIPIIGVSAKASVEDQINAFKHGADAYITKPFHPKQIISTIENLLSRQ 1187

Query: 122  KSKDE--NQFLDAI 133
                +  N  L +I
Sbjct: 1188 TLLKDYFNSSLSSI 1201


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V YL      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|329961691|ref|ZP_08299737.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531563|gb|EGF58400.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1338

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+V+ +  +R++  ++F+ F + V  A    E       E +PN +V D  M  +   
Sbjct: 1081 KILIVEDNASIREMLANIFHPF-YEVLTAPDGEEGLALVHSE-MPNIVVSDVVMPKMSGT 1138

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++       + V  L      E+ I G R GA+ ++ KPFN   L      L   
Sbjct: 1139 ELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVNS 1198

Query: 121  QKSKDE 126
            +    E
Sbjct: 1199 RILLQE 1204


>gi|326317892|ref|YP_004235564.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374728|gb|ADX46997.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 375

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     +   L  D  ++V  A    +A    + +  P+ +++D  M G    
Sbjct: 19  TVLVVDDTPDNLALMATLLRDH-YLVKVANHGEKALRIAQSDAPPDLILLDIMMPGLDGY 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ V +L      E    G   GA  ++ KP +   L   +     +
Sbjct: 78  EVCRQLKAHPAARDIPVIFLTARSTPEDERRGLSVGAVDYITKPISPPILLARVHTHLTL 137

Query: 121 QKSKD 125
           + + D
Sbjct: 138 KATAD 142


>gi|298530005|ref|ZP_07017407.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509379|gb|EFI33283.1| response regulator receiver modulated diguanylate cyclase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 310

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD           L  D  + +  ATS   A E  E +  P+ +++D  M  +  
Sbjct: 10  RSVLIVDDQPDNIHALGKLIKDE-YRIMAATSGARALEIAESDNPPDLILLDVMMPEMDG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++      + V ++      E    G   GA  ++ KPF    +R  ++    
Sbjct: 69  YEVCRRLKRNEKTNSIPVIFVTAMDSAEDEETGFNLGAVDYISKPFKPTIVRARIKNQMN 128

Query: 120 MQKSKDENQFLD 131
           ++   D  + L 
Sbjct: 129 LKIKTDMLEKLS 140


>gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 54/133 (40%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +   +    + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM--ELTQYDLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
                  +  + +
Sbjct: 123 TSPTQGKEVQEQL 135


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+V+   ++ +     F   GF V  A    +A +  +     + +++D  +  +     
Sbjct: 6   LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSY-DIIILDVVIPKIDGVKV 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R       + +  L  +   E  + G  AGA+ ++ KPF+ + L   ++ + +   
Sbjct: 65  CKQLRLQSE---IPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYN 121

Query: 123 SKDENQ 128
              E +
Sbjct: 122 KVQEEK 127


>gi|149911937|ref|ZP_01900535.1| hypothetical two-component response regulator [Moritella sp. PE36]
 gi|149804984|gb|EDM65013.1| hypothetical two-component response regulator [Moritella sp. PE36]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +  +    F   G+ +  A    +           + +++D  M  + 
Sbjct: 1   MK-ILLVEDHQDIAGIIFDFFEIKGYTLDYAQDGVQGYALA-SNNYYDLIILDIQMPRMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G D  +  L      E  +AG   GA+ +L+KPF+ + L   ++ L + 
Sbjct: 59  GLTVCQKLREQGDDTPILMLTARDTREDTLAGFDCGADDYLIKPFDLDILAARIQALHRR 118

Query: 121 QKSKDENQFL 130
           +  K+  + L
Sbjct: 119 RSGKNAAKVL 128


>gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +K+   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  +    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETELIS 131


>gi|104780757|ref|YP_607255.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95109744|emb|CAK14447.1| putative sensor histidine kinase/response regulator hybrid
           [Pseudomonas entomophila L48]
          Length = 784

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  A    EA E  E+E   + +++D +M  +  +
Sbjct: 664 RILLVEDNPVNQLVAKGMLAKLGCQVQVAAHGAEALELLEQET-FDLVLMDCNMPVMDGY 722

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ     ++ +  L      E+      AG N +L KPF RE L   +
Sbjct: 723 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALI 776


>gi|91213453|ref|YP_543439.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UTI89]
 gi|117626180|ref|YP_859503.1| DNA-binding transcriptional regulator CpxR [Escherichia coli APEC
           O1]
 gi|218560980|ref|YP_002393893.1| DNA-binding transcriptional regulator CpxR [Escherichia coli S88]
 gi|237702944|ref|ZP_04533425.1| transcriptional regulatory protein CpxR [Escherichia sp. 3_2_53FAA]
 gi|331660467|ref|ZP_08361401.1| transcriptional regulatory protein CpxR [Escherichia coli TA206]
 gi|331685652|ref|ZP_08386235.1| transcriptional regulatory protein CpxR [Escherichia coli H299]
 gi|91075027|gb|ABE09908.1| transcriptional regulatory protein CpxR [Escherichia coli UTI89]
 gi|115515304|gb|ABJ03379.1| transcriptional regulatory protein CpxR [Escherichia coli APEC O1]
 gi|218367749|emb|CAR05543.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli S88]
 gi|226902881|gb|EEH89140.1| transcriptional regulatory protein CpxR [Escherichia sp. 3_2_53FAA]
 gi|281180983|dbj|BAI57313.1| two-component response regulator [Escherichia coli SE15]
 gi|294490068|gb|ADE88824.1| transcriptional regulatory protein CpxR [Escherichia coli IHE3034]
 gi|307628987|gb|ADN73291.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UM146]
 gi|315289598|gb|EFU48991.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315300224|gb|EFU59461.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|323949403|gb|EGB45292.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954316|gb|EGB50101.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|331052416|gb|EGI24453.1| transcriptional regulatory protein CpxR [Escherichia coli TA206]
 gi|331077123|gb|EGI48338.1| transcriptional regulatory protein CpxR [Escherichia coli H299]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + G+ V +  +  +A +  E + L + +++D  +  V  F
Sbjct: 4   NILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNL-DLVILDVMLPDVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +V+    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  RICQKIREQYFY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119


>gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 1   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKEFDIILLDVMMPSMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 60  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116

Query: 119 QMQK 122
           +  K
Sbjct: 117 RRTK 120


>gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
 gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 4   KIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEA-EIRLQERIPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 ARPE 126


>gi|82617296|emb|CAI64201.1| probable response regulator (CheY-like receiver domain and
           DNA-binding HTH domain) [uncultured archaeon]
          Length = 170

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD                 + V  A    EA      E  P+ +++D  +     
Sbjct: 48  TKILVVDDEPDTLLPLTRALEADNYAVVGAVDGAEALIKVSNET-PDLILLDLMLPKLNG 106

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +++ P    + V  L  + + +  + G   GA+ ++ KPF+   L+  +R L +
Sbjct: 107 YEVCMKLKENPATRHIPVIMLSAKGEIKDKVLGIEIGADDYVTKPFDLLELKARIRALLR 166

Query: 120 MQKS 123
              +
Sbjct: 167 RTGA 170


>gi|330892053|gb|EGH24714.1| two-component response regulator transcription regulator protein
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    + K+     ++ GF V       EA            +V+D  M  + 
Sbjct: 1   MPKVLLIDDDVELTKILSQYLSNEGFDVLAIHDGEEAISR-SANERFEIVVLDIMMPRLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++ + + V +  L    D    + G   GA+ ++ KP     L   +R + + 
Sbjct: 60  GL-QVLQRIRINSSVPILMLTARGDDVDKVTGLNLGADDYVSKPCTPAELVARIRAILRR 118


>gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
          Length = 240

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +VD    + ++   +  + GF          A E     + P+ +++D  + G+ 
Sbjct: 1   MATIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPI-VKPDLILLDVMLPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     ++V +  L  + D   ++AG  AGA+ ++ KPF    L   +    
Sbjct: 60  GTGVARRIRA---TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARF 116

Query: 119 QMQKSKDEN 127
           ++ K   E+
Sbjct: 117 RIAKPAAED 125


>gi|237725959|ref|ZP_04556440.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435767|gb|EEO45844.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1448

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+++ +  +R     +     ++V EA + C+  E   +E LP+ ++ D  M  +  
Sbjct: 1181 TRILIIEDNEELRHFICGVLARE-YVVLEAGNGCQGLEMTLRE-LPDIVISDIMMPEMDG 1238

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  V+       + +  L  +      I G   GA+ ++ KPF+   L+  +  L +
Sbjct: 1239 IEYLKRVKGNNDICHIPIILLSAKSSLNDQIQGLEYGADEYITKPFSSAYLKARVDSLLK 1298

Query: 120  MQK 122
             ++
Sbjct: 1299 QRQ 1301


>gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
 gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  GF V EA       E    E   + +++D  M  + 
Sbjct: 1   MANILLIDDDTELTSLLKDILSFEGFTVSEANDGYAGLEAINDE--IDLILLDVMMPRLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++    +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GM-ETLKKLREHWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QK 122
            +
Sbjct: 118 TQ 119


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + R      GF V  A +   A +   +   P+ +++D  +  V  F
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQA-RPDLMILDVMLPDVDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G  V V YL         IAG   G + ++ KPF  + L   +R + + 
Sbjct: 65  EVCRTLRA--GGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRR 122


>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 239

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLLVD    +R+         GF V    +  EAR         + +++D  M G     
Sbjct: 7   LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNAN-AIDLVILDIMMPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              H+R+    +++ V  L  + +    I G   GA+ ++LKPF+   L   ++ + + 
Sbjct: 66  LCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121


>gi|304317247|ref|YP_003852392.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778749|gb|ADL69308.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 320

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD     R + +++ +  G+ ++E+    EA     + +LP+ +++D  M G   
Sbjct: 14  KSILIVDDDKFSRTILKNILSGAGYKIYESQDGDEAL-KLYRLILPDMIILDVVMPGLSG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +  +R       V V  L    DFE+ I G   GA++++ KPFN + L   ++ L Q
Sbjct: 73  FDLLRILRDEEENQLVPVILLTSSDDFEEKIHGLELGADAYITKPFNEKELLAQVKNLFQ 132

Query: 120 MQK 122
             +
Sbjct: 133 RIE 135


>gi|291294713|ref|YP_003506111.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469672|gb|ADD27091.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 216

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    VR+  R      G+ V EA +  E      +   P  +V+D  + G  
Sbjct: 1   MARVLLIEDDAGVREALRLGLELEGYTVLEAANGAEGLRRLAEN--PELVVLDVLLPGGD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R+      V V  L    + E  + G R GA+ +L+KP+    L   +  L 
Sbjct: 59  GFGVLREIRRQSA---VPVLMLTALDEVEWRVKGLREGADDYLVKPYALSELVARLEALL 115

Query: 119 QMQKSKDE 126
           +  K  +E
Sbjct: 116 RRSKRPEE 123


>gi|254424941|ref|ZP_05038659.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192430|gb|EDX87394.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 216

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+ D    +R       +  G+ V  A     A E   KE   + L++D  M G+   
Sbjct: 5   SILVADDEKSIRLTVAQALSSQGYEVATAIDGSTALEQL-KETPTDLLLLDIQMPGMTGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               + +     + V  +      +  +   + GA  +L KPF    LR  +  + + +
Sbjct: 64  EVLQKAITQQPSLKVVMVSAHGSVDNAVEAMKLGAVDYLQKPFTPSELRELVNRVLERE 122


>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     GF V       EA E   +E  P+ L++D  + G   +
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EMRLQERTPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 ARPE 126


>gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    VR +         +    A +   A         P+ + +D  +  +   
Sbjct: 5   SILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHN-PDVIFLDLGLPDMDGV 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R++   T++ +  +    +    I    AGA+ +L KPF+ E L   +R   + 
Sbjct: 64  -DVIRKVRTWTEIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVSLRR 120


>gi|291563054|emb|CBL41870.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +    + +     + V  A +  EA      +  P+ +++D  +  +   
Sbjct: 6   RVLVVEDDKRISNFIKTVLEANNYDVIVAQTGAEAYSMVTSQC-PDVVILDLGLPDMDGM 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   + + V  +         +     GA+ ++ KPF    L   +R   +  +
Sbjct: 65  -KILQGVREWSAMPVIVVSARTHERDKVEALDLGADDYITKPFGTSELLARIRTAIRHTR 123

Query: 123 SKDENQ 128
           S   NQ
Sbjct: 124 SGIPNQ 129


>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
          Length = 253

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDY-DAVVLDVMLPGIDGF 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
 gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +           G+ V  A    EA    EK  +   +++D  + G    
Sbjct: 5   KILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVT-LILLDWMLPGYDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   +DV V  +        +      G + ++ KPF  E L   +R + +   
Sbjct: 64  TV-LRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRIN 122

Query: 123 SKD 125
            + 
Sbjct: 123 REQ 125


>gi|254884267|ref|ZP_05256977.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640651|ref|ZP_07995367.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254837060|gb|EET17369.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387714|gb|EFV68577.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1467

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1330 RKLFRE 1335


>gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
 gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
          Length = 251

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +V+    +R++ R+   + G+ V E     +  +  E   +P  +++D  +    
Sbjct: 29  MATIYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLES-KVPALILLDIMLPNED 87

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R       V +  +  +      + G   GA+ ++ KPF    L   ++ L 
Sbjct: 88  GLDILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALL 147

Query: 119 QMQKSKDENQFLD 131
           +   +  E   + 
Sbjct: 148 RRTTNAQEESQIA 160


>gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      + GF V  A    EA+      L  + +++D  M G   +E
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGIE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +    +V +  L    +    I G  AGA+ +L KPF+   L   +  + + 
Sbjct: 73  VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|183219817|ref|YP_001837813.1| transcriptional regulatory protein CreB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909952|ref|YP_001961507.1| two component response regulator sensor protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774628|gb|ABZ92929.1| Sensor protein of a two-component response regulator [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778239|gb|ABZ96537.1| Transcriptional regulatory protein CreB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LL++    +++  +      GF +  A +  +  +        + +++D  +    
Sbjct: 1   MIKILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLA--DDISLILLDIGLPDQS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R+      + V +L         + G   GA+ +++KPF+   L   +R + 
Sbjct: 59  GFEVLKSIRK---AASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAIL 115

Query: 119 QMQKS-----KDENQFL 130
           +  ++     +  NQ L
Sbjct: 116 RRTQNPLVLEQKSNQKL 132


>gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 235

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            SLLL+D    + ++ +      G+ V  A+         +     + +++D  +  V  
Sbjct: 4   KSLLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVMLPKVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++++       V  L  + D    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 64  F-EVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRV 122

Query: 122 KSKDENQ 128
             +   Q
Sbjct: 123 DIQAGLQ 129


>gi|260462562|ref|ZP_05810769.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031758|gb|EEW33027.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 239

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M S   +L+VD    +R + +  F   G     A    E  E   +    + +V+D  + 
Sbjct: 1   MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIE-METILRRAQVDLIVLDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   LE    +R         +  L    +    + G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGLELCRDLRAQYS---TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIR 116

Query: 116 ELPQMQKSKDENQF 129
            + +   +  E + 
Sbjct: 117 AVLRRNGAAAEPKR 130


>gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 222

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D  V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 222

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D  V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|256015256|ref|YP_003105265.1| transcriptional regulatory protein OmpR, putative [Brucella microti
           CCM 4915]
 gi|255997916|gb|ACU49603.1| transcriptional regulatory protein OmpR, putative [Brucella microti
           CCM 4915]
          Length = 238

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter
           baumannii 1656-2]
 gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 319

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             L+V+    +R+    +    G+ V  A    +     E E   + +V+D  +  +   
Sbjct: 2   RALIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPY-DAIVLDLGLPKLDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L     + + +AG  AGA+ +L KPF+ E L   +R L + 
Sbjct: 61  TVLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRR 118


>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+V+    + K+  +     G+    + +  +A +   K    + +++D  + G+  F 
Sbjct: 6   LLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLK-RSFDLILLDIMLPGIDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  +  D+ +  L  + +    + G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRD 124

Query: 122 KSKDE--NQFLDA 132
           + +     + L A
Sbjct: 125 RRQRAGLQEVLSA 137


>gi|307133596|dbj|BAJ19085.1| GppX [Tannerella forsythia]
          Length = 710

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++ +H +      LF D  + V  A +  E  E    +L+P+ ++ D  M G+   
Sbjct: 461 RLLVIEDNHDIAAYIGSLFADR-YAVSYAANGKEGMEKAL-DLVPDLIITDLMMPGMDGL 518

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR   +   + +  +  ++  E+ I G  AGA++++ KPFN + LR  + +L   
Sbjct: 519 EVCRQVRGNEIINHIPIIVVTAKITEEERIKGLEAGADAYISKPFNADELRTRVEKLLDR 578

Query: 121 Q-KSKDE 126
             + +D+
Sbjct: 579 HLRLRDK 585


>gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G+  F A+   EA +  EK    + ++ D  M  + 
Sbjct: 1   MFQILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTN-IDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +       + +  +  +  FE    G  AG + +++KP +   +   +  L + 
Sbjct: 60  GYELTRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKR 119

Query: 121 QKSKDE 126
            K   E
Sbjct: 120 SKLASE 125


>gi|293371462|ref|ZP_06617885.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292633565|gb|EFF52125.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1292

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  EA      E  P  ++ D  M  +  
Sbjct: 1027 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKEALTIIP-EYKPELVISDIMMPEMRG 1084

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1085 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1144

Query: 120  MQKSKD 125
             +    
Sbjct: 1145 NRALLR 1150


>gi|290962988|ref|YP_003494170.1| two-component system sensory histidine kinase [Streptomyces scabiei
            87.22]
 gi|260652514|emb|CBG75647.1| putative two-component system sensory histidine kinase [Streptomyces
            scabiei 87.22]
          Length = 1424

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +     E        + +++D  M  +  
Sbjct: 1304 RTVLVVDDDARNLFALSGMLELHGFQVLHADNGRRGIEMLLAHPDISLVLMDVMMPEMDG 1363

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                + +R MP   ++ +  +  +           +GAN ++ KP +   L   +R   
Sbjct: 1364 YSATSEIRSMPQYAELPIIAVTAKAMPGDQEKSLASGANDYVTKPVDTNDLIGRVRRWL 1422



 Score = 43.6 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 24/131 (18%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDF------G------FMVFEATSVCEAREFCEKELLPNY 49
              LL+V+     R +   +          G        +  A    EA      E   + 
Sbjct: 1144 RRLLVVEDRP--RGLLTLVAERAVADLAPGDDPPGAIDIITAIGAQEAASMLAAEPC-HC 1200

Query: 50   LVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGAN----SFLLK 103
            +V++  M        +  +        V V                R  A      FL  
Sbjct: 1201 VVLELGMPDGEGARLLEAMEGDSALASVPVLVHTGHRVDLAQEQTLRTRAEGRPLDFLS- 1259

Query: 104  PFNRETLRFAM 114
              + + LR  +
Sbjct: 1260 --SLDELRERI 1268


>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +  +        GF  F         +   KE  P+ +++D  +     
Sbjct: 3   KKILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQ-WTKENCPDLIILDVMLPNKDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     + + +  +   ++    I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 62  FEICREIRS---FSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|168178399|ref|ZP_02613063.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|182670659|gb|EDT82633.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
 gi|322805312|emb|CBZ02876.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum H04402 065]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLVD    +R   +       + + EA +  +A      E   + +++D  M  + 
Sbjct: 1   MYNILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNTL-HENEIHLILLDVMMPIMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +     ++V + +L  + +    + G   G + ++ KPFN   L   ++   + 
Sbjct: 60  GIEVAQKIR-TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALRR 118


>gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + V    +  +A +        +  ++D  +  +  F
Sbjct: 4   NILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSY-DLAILDVMLPDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ        +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICRTIRQNYTW---PIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRR 119

Query: 121 QKSKDENQFLDAI 133
            K  +  Q    +
Sbjct: 120 YKRYNVQQKAKEL 132


>gi|256059315|ref|ZP_05449517.1| Probable transcriptional regulator ycf27 [Brucella neotomae 5K33]
 gi|261323274|ref|ZP_05962471.1| two-component system response regulator [Brucella neotomae 5K33]
 gi|261299254|gb|EEY02751.1| two-component system response regulator [Brucella neotomae 5K33]
          Length = 238

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR   L + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---LTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    V    +    +  + V  A    E  +    E   + +V+D  +      
Sbjct: 2   RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLAL-EKPFDLVVLDWMLPKKDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         +  L  +   E ++AG  +G++ +L KPF    L   +R L +  +
Sbjct: 61  SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 123 S 123
            
Sbjct: 121 L 121


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTKQTI 132


>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
 gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + R      GF V  A       +    E   + L++D  + G  
Sbjct: 1   MSKILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDY-DLLILDLMLPGTD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR      +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFDICRQVR---DVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106]
 gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106]
          Length = 1161

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           +++L+VD +  +R+   ++     F V  A +  E  E   K   P  ++ D  M     
Sbjct: 804 NTILVVDDNPDLRRYLSNILKPAKFHVVMARNGAEGFEQA-KTYRPEVIITDLMMPVVSG 862

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+ I  +R+        +  L  + D +  I G   GA++++ KPFN   L   +R L  
Sbjct: 863 LDLIRMIREDVQLRGTPIILLTAKADEDTRIEGVERGADAYVSKPFNDRELLAEVRNL-- 920

Query: 120 MQKSKDENQFLDA 132
             ++  EN+   A
Sbjct: 921 --RALKENERRVA 931



 Score = 98.3 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 13/143 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       +    F    + V  A S  +A E   +E     ++ D+ M  +   
Sbjct: 10  KILVVDDEPDNLDLLYRTFYRA-YKVLRADSAPQALEILAQEEDVAVIISDQRMPQMSGT 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELP--- 118
                      D     L    D E ++    +G    ++ KP+  E L+  + +     
Sbjct: 69  ELLSVAATQYPDAIRILLTGYTDVEDLVEAINSGQVFKYVTKPWEAEELKVIVNQALETH 128

Query: 119 --------QMQKSKDENQFLDAI 133
                   +++++  +   L+A+
Sbjct: 129 NVLKTRTEELKRALQQESLLNAV 151


>gi|187925557|ref|YP_001897199.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716751|gb|ACD17975.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   +  + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121


>gi|159897113|ref|YP_001543360.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890152|gb|ABX03232.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 250

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    + ++      + G+    A +                +++D  +     
Sbjct: 5   THILVVEDDPAIGRLLLMHLREAGWQAILANTGMTGLRLW-ASDCFQIVLLDVMLPDLSG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     ++V +  L  +   + ++ G   GA+ +L KPF++  L   ++ L Q
Sbjct: 64  WELCQQLRAE---SNVPILMLTAKASDDDVVRGLNLGADDYLTKPFSQAQLIARVQRLIQ 120

Query: 120 MQKSKDENQFLDAI 133
            Q   +    L ++
Sbjct: 121 RQALLEPAPRLPSL 134


>gi|91785406|ref|YP_560612.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689360|gb|ABE32560.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   +  + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121


>gi|116623300|ref|YP_825456.1| two component sigma54-specific Fis family transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226462|gb|ABJ85171.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Candidatus Solibacter usitatus Ellin6076]
          Length = 454

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   +VR      F+  G+         EA E   +    +  ++D  M G+   
Sbjct: 16  RILIVDDELVVRDSLGKWFSSEGYSARPVGGAREALE-VIQHGEFDIALLDIKMPGMDGM 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +D+ +  +      E  +   + GA  ++ KP + + L   +    + ++
Sbjct: 75  ELQARLREADSDLTIIMMTGYSSVETAVQALKQGAYDYITKPVDPDELSHLVSNALEHKR 134

Query: 123 SKDENQFLDA 132
           ++ E   L  
Sbjct: 135 ARREVDRLRE 144


>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
 gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +    G+         +A     + + P+ +++D  + G+   
Sbjct: 4   KILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNR-INPDLVLLDLMLPGMDGI 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    + V +  L  + D   ++AG  AGA+ ++ KPF  + L   +    + 
Sbjct: 63  EICRRIRQ---TSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRH 119

Query: 121 QKSKDENQFLDA 132
            +++ E + L A
Sbjct: 120 LETQAE-EVLKA 130


>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
 gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V      +  + V +  +  EA + C      +  ++D  +  V  F
Sbjct: 33  NILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALD-CIASTKIDLAILDIMLPDVDGF 91

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++Q+       V  L  + ++   I G   GA+ ++ KPFN   L   ++   +   
Sbjct: 92  -QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYT 150

Query: 123 SKDE 126
             +E
Sbjct: 151 QYNE 154


>gi|186685002|ref|YP_001868198.1| AraC family transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467454|gb|ACC83255.1| two component transcriptional regulator, AraC family [Nostoc
           punctiforme PCC 73102]
          Length = 289

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++   + R +   +    GF    A       +   +E LP+ ++ D  M  +  
Sbjct: 7   KKILVIEDDAVTRNLFLEVLEAQGFDTIGAEDGVAGIQKA-QEHLPDLVICDIQMPDMDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +A +RQ P    +   +L        +  G  +GA+ +L KP + E    A+    +
Sbjct: 66  YTVLARLRQDPHTAIIPFIFLTGSNTQTDVRKGMESGADDYLTKPSSIEDFLRAIAVRLE 125

Query: 120 MQ 121
            Q
Sbjct: 126 KQ 127


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 10/135 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+ V +A +  EA    +     + +V+D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  VR+      + +  L  +      I G   GA+ ++ KPFN   +   ++ L 
Sbjct: 60  GNQVVKEVRKEM---QLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLL 116

Query: 119 QMQ----KSKDENQF 129
           +       S+++N+ 
Sbjct: 117 RRSNYMTNSQEQNKL 131


>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 257

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------------LLPNY 49
            +LLV+   ++R+       D GF V  A +   A E                     + 
Sbjct: 19  KVLLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISL 78

Query: 50  LVIDESMEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNR 107
           +++D  + G+        VR    G D+ +  L  +      + G   GA+ +L KPF  
Sbjct: 79  IILDLMLPGMNGLDLCRLVRHQ--GIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGI 136

Query: 108 ETLRFAMRELPQMQKSKDE 126
             L    R L +  +S+D+
Sbjct: 137 RELIARCRALLRRCQSQDK 155


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|320536674|ref|ZP_08036689.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
 gi|320146496|gb|EFW38097.1| response regulator receiver domain protein [Treponema phagedenis
           F0421]
          Length = 456

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L++D    +R+  +    D G+ VF A+   +  +        + ++ D  M  +
Sbjct: 1   MKFSILIIDDEKNIREGLQMALEDEGYEVFTASDGKKGLDIAFSND-IDLVITDLKMPEI 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R       V V  L      E  +   R GA  FL KP + + L   +R   Q
Sbjct: 60  SGEEVLRRISSETPGVPVIVLTGHGTVETAVEAMRTGAYDFLTKPLDLDRLSLLVRRALQ 119

Query: 120 MQKSKDENQFL 130
            ++   +++ L
Sbjct: 120 NRELVLQHREL 130


>gi|298682184|gb|ADI95252.1| winged helix family two compontent transcriptional regulator
           [Pseudomonas putida]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +  V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|302337571|ref|YP_003802777.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634756|gb|ADK80183.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 1/128 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    +       F   GF +        A +    + LP+ +V+D  M  +  
Sbjct: 5   KRIAIVDDEEALTATLAFAFRREGFEIELFHDGAAAWQHF-SQRLPHLIVLDIMMPKMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G  V + +L    D    + G  +G + +L KPF+   L   +R + +  
Sbjct: 64  LTLCKLLRSEGMQVPIIFLSSRDDEIDRLLGFESGGDDYLSKPFSVRELLARVRAVLRRS 123

Query: 122 KSKDENQF 129
            +  + + 
Sbjct: 124 STVADGEL 131


>gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 55/131 (41%), Gaps = 2/131 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    + +       + G+ VF+A +  EA +   ++ + + +++D  M  +   
Sbjct: 2   NILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLI-RDHVIHLIIMDIMMPKMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++       + +  L  + +    I G   GA+ ++ KPFN   L   ++   +   
Sbjct: 61  TATMKIRQDNM-IPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRRYT 119

Query: 123 SKDENQFLDAI 133
           +    +   A+
Sbjct: 120 TFGSLERSSAV 130


>gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   ++++D    + ++     + + ++V   T+  EA E  E    P+ +++D  M  +
Sbjct: 1   MKTRIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALE-NDEPSIIILDVMMPHI 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R++   +DV +  L    D    IAG  +G + ++ KPF    L   +  +
Sbjct: 60  NGFETCKRIRKI---SDVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAI 116

Query: 118 PQMQKSK 124
            +  + +
Sbjct: 117 LKRTERQ 123


>gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  ++LV+    + +    L    G+ V        A    +K+   + +++D  + G  
Sbjct: 1   MTRIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGA-DLILLDLMLPGLP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R       V +  L  +     ++ G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCREIRTRSA---VPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|116073496|ref|ZP_01470758.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116068801|gb|EAU74553.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 244

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ R   +  G+ V  A+           +  P+ +V+D ++      
Sbjct: 10  RVLVVDDETKLTELLRLELDVEGYDVDVASDGATGLVKARSQPSPDLIVLDWNLPDFSGV 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    +  L    D    +    AG + +L+KPF+ E L   +R + +  +
Sbjct: 70  DICQRIRRGGVTTPILMLTGHDDVADRVTALDAGVDDYLIKPFSIEELMARLRAMQRRAQ 129

Query: 123 S 123
           S
Sbjct: 130 S 130


>gi|90022619|ref|YP_528446.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952219|gb|ABD82234.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 303

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S     +        G     A    +A    +K L P+ +++D  M G+  F 
Sbjct: 11  VLIVDDSPDTLGMLNEALESTGMTTLVALEGKQALTIAQK-LTPDVILLDAIMPGMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QM 120
               ++  P   ++ V ++    D + ++ G  AG   +L KP N + L   +       
Sbjct: 70  TCEKLKANPSLKNIPVIFMTGLSDTDSIVKGFAAGGVDYLTKPINPKELVARINAHLINA 129

Query: 121 QKSKDENQFLDA 132
           + +    Q LD+
Sbjct: 130 RTALSAQQALDS 141


>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + ++         F          A    +    PN +++D  + G+  
Sbjct: 5   QKILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDT-FEPNLVLLDLMLPGIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ ++ KPF+ + L   ++ + +
Sbjct: 64  YQVCREIR---TKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLR 120

Query: 120 MQKSKDEN 127
             K + + 
Sbjct: 121 RYKPQVQE 128


>gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 319

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|167588835|ref|ZP_02381223.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E          P+ +V+D  M G     
Sbjct: 7   VLIVDDDRGIRELIADYLEKNGMRVSLAANGRE-MRGVLDSGAPDLIVLDLMMPGEDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +     V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELR-VGKFRAVPVLMLTARGEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRT 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|150005428|ref|YP_001300172.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149933852|gb|ABR40550.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1467

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1212 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1269

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1270 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1329

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1330 RKLFRE 1335


>gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
           1622]
 gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
           1622]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +  + R    + G +V    +  +A +    E+  + +++D ++ G+   
Sbjct: 2   RLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQA-GEVAYDAIILDWALPGMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V  L       + + G RAGA+ +L+KPF  E L   +  L +  +
Sbjct: 61  ALLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEALHRRSE 120

Query: 123 SKDE 126
            + +
Sbjct: 121 GQTQ 124


>gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           enterocolitica W22703]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R+  R      G+ VFE+ ++            P+ +++D  +     
Sbjct: 6   TNILIVEDEKEIRRFVRIALESEGWRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++ +   + + +  L      E  +A   AGA+ +L KPF    L   +R   +  
Sbjct: 65  LT-YIQDLRQWSSIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH 123


>gi|312958365|ref|ZP_07772886.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311287429|gb|EFQ65989.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    FN  G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQ-MDRLLGREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R         +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q
Sbjct: 71  TACKRLRGANNQTPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +    R      GF V  A    +  E   +E   + +V+D  + G+  
Sbjct: 3   QRILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLE-FAREAAHDLVVLDLMLPGIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++   +DV +  L         + G  AGA+ +L+KPF    L   +R   + +
Sbjct: 62  IEVA-RRLRAASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRR 120

Query: 122 KSKDENQFL 130
           +S  ++  L
Sbjct: 121 QSAQQSDIL 129


>gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +  +    F+  G+ V+ AT+   A +  EK+  P+ +++D +M  +  
Sbjct: 3   QSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEKK--PDIILLDVNMPDIDG 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R         + +L   ++    I G   GA+ +++KPF+ + L   +    + +
Sbjct: 61  FTVCERIRD-YVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRRE 119

Query: 122 K 122
           K
Sbjct: 120 K 120


>gi|265751167|ref|ZP_06087230.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263238063|gb|EEZ23513.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1270

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD +  +    R L     + +  A +  EA +    EL+P+ ++ D  M  +    
Sbjct: 1021 ILVVDDNQDLLDYLRMLLAPR-YQITCALNGKEALDLL-SELMPDLVISDVMMPVMDGME 1078

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++Q    + + V  L  +V+    + G   GA+ ++ KPF+ + ++  +  L   +
Sbjct: 1079 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLLSNR 1138

Query: 122  KSKD 125
            +   
Sbjct: 1139 ERMK 1142


>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H + ++      + G+    A+   EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++     V +  L  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-TEVLKEVRKDNPVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 AQN 121


>gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1331

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+V+ +  +R++  ++F    + V  A +  E  E    E +P+ ++ D  M  +   
Sbjct: 1084 KILIVEDNDSLREMLVNIFKSL-YTVITAVNGKEGLEKTCSE-MPHIVISDIIMPEMSGT 1141

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  +   E  + G + GA+ ++ KPFN   L      L   
Sbjct: 1142 ELCLAIKQNFDTCHIPVVLLTAKTAIEHNLEGLKMGADDYITKPFNINILLSRCNNLVNN 1201

Query: 121  QKSKDE 126
            +    E
Sbjct: 1202 RIMLQE 1207


>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++         + V  A     A E       P+ +++D  +  + 
Sbjct: 2   MPRVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVAT-CRPDAVLLDLGLPDMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++Q+   + V V  +      E+ I    AGA+ ++ KPF+ + L   +  + + 
Sbjct: 61  G-IEVIKQLRGWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRR 119


>gi|91216473|ref|ZP_01253439.1| two-component system, transcriptional regulatory protein
           [Psychroflexus torquis ATCC 700755]
 gi|91185267|gb|EAS71644.1| two-component system, transcriptional regulatory protein
           [Psychroflexus torquis ATCC 700755]
          Length = 240

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   + V  A +  E  E  +K    +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNSYDVTHAKNGMEGFEKFKKGNY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           D+ + +L  +   + ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIRAKNEDIPIIFLTAKAMKDDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124

Query: 122 KS 123
            S
Sbjct: 125 NS 126


>gi|37522691|ref|NP_926068.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35213693|dbj|BAC91063.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 358

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD       + + L    G+ +  A+S  E      K   P+ L++D  M G+   
Sbjct: 7   RILVVDDLPDNIALVQFLLASEGYEIETASSGAECLARVYKNS-PDLLLLDVMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + +  +    D    + G  AGA+ F+ KP   + L   +R L ++
Sbjct: 66  EVTRRLKSDGHLPFLPILLVTA-SDRPSAVLGLDAGADEFIRKPIEPDELLARVRSLLRL 124

Query: 121 QKSKDENQFLD 131
           ++S  E   + 
Sbjct: 125 KRSISERDNIA 135


>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 266

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  V      D  + V  +    E     E+    + LV+D  + GV  
Sbjct: 24  KRILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGW-DALVLDLMLPGVDG 82

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +            I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 83  LEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRV 142

Query: 122 KSKDENQFLDA 132
           ++   +   DA
Sbjct: 143 EAMARDVRADA 153


>gi|312887229|ref|ZP_07746833.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311300541|gb|EFQ77606.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1477

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 9/133 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R+      +   + V EA    E     +   LP+ +V D  M  +   
Sbjct: 1217 TVLIVEDNTDLRRFLYSQLS-VNYRVIEAADGEEGLRIAQAS-LPDLVVSDVMMPNMDGI 1274

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  ++   L + + V  L  +   +  I G + GA+ ++ KPF+ + +   +  L + 
Sbjct: 1275 QMLDQLKNNILTSHIPVILLTAKSSVDNQIEGLKYGADFYITKPFHTDFIMACIESLIKQ 1334

Query: 121  QKSKDENQFLDAI 133
            +K     Q  ++I
Sbjct: 1335 RK-----QLFESI 1342


>gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 250

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A     A    E +L P+ +++D  +  +  
Sbjct: 12  RTILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAE-QLKPDLIIMDVMLPIMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V +  L         I G  AGA+ ++ KPF+   L      L +  
Sbjct: 71  IEATRRIISKMP-VPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRV 129

Query: 122 KSKDE 126
           +   +
Sbjct: 130 ERASQ 134


>gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica]
          Length = 222

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +    +   +  GF V  A+    A +  + E     L++D S+  +   
Sbjct: 2   RLLLVEDHPELLHWLQKALSSTGFAVDVASDGIVADQLLQTENY-ALLILDVSLPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              VR    G ++ V  L  + D    + G  +GA+ +L KPF+ + L   +R L + 
Sbjct: 61  SLLVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLRR 118


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+VD    +R + R        G+ V  A    EA E   +   P+ L++D  +  
Sbjct: 1   MMKILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPD 58

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E +   R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ 
Sbjct: 59  TDGYELLRLFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN 116

Query: 117 LPQMQKSKD 125
           + +  K  +
Sbjct: 117 MARRVKKTE 125


>gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
 gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A S  EA +        N L++D  M  +  F
Sbjct: 23  RILVVDDEEDLCEILKFNLEMEGYTVDTAYSAEEALKL--DITQYNLLLLDVMMGEISGF 80

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ + ++  +      I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 81  KMARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140

Query: 121 Q---KSKDENQF 129
               + K+E Q 
Sbjct: 141 TAGVQIKEEEQL 152


>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA +  + E  P+ L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPDLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G + ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LKRVK 121


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF    A     A     +    + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNE-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +   + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKELRSV---STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+    +R +      + G++V  A +  E       E   + +++D  + G   +
Sbjct: 5   TILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEP-IDLIILDIMLPGTNGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    +DV + ++  +      + G   GA+ +L KPF    L   +R + + 
Sbjct: 64  ELCRQLRQK---SDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRR 120

Query: 121 ---QKSKDENQFLDA 132
               +  ++++  +A
Sbjct: 121 GGMDRQSEQSRRNEA 135


>gi|15807540|ref|NP_296276.1| response regulator [Deinococcus radiodurans R1]
 gi|6460380|gb|AAF12095.1|AE002084_8 response regulator [Deinococcus radiodurans R1]
          Length = 344

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + K+   + +  G  V   +   EA +   K   P+ ++ D  M  + 
Sbjct: 1   MPRILVVDDDAAIVKLISVILSRAGHEVRSCSHPVEALDLL-KVFTPDLIISDVVMPYMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LEF+  VR     + +    L    +   +  G   GA+ +L KPF  + L  A+    
Sbjct: 60  GLEFLEQVRDHENLSAMPFILLSSHAERTDVRRGMNLGADDYLPKPFTPQGLTTAVDARL 119

Query: 119 QMQKSKDENQ 128
           +      + +
Sbjct: 120 RRVGLTAQAE 129


>gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A S  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGERESTD 125


>gi|260062528|ref|YP_003195608.1| two-component system sensor histidine kinase/response regulator
            [Robiginitalea biformata HTCC2501]
 gi|88784093|gb|EAR15263.1| two-component system sensor histidine kinase/response [Robiginitalea
            biformata HTCC2501]
          Length = 1342

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +L+V+    VR+    ++    + V EA +  E  E    E++P+ ++ D  M     +E
Sbjct: 1095 ILVVEDHREVRQFLASVWKGK-YQVLEAENGAEGVEKAL-EIVPDLIISDVRMPVRDGIE 1152

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L      E  + G ++GA+ F+ KPF    L   ++ L   +
Sbjct: 1153 LCNTLKTDQRTSHIPIILLTAGSGEEHELKGLQSGADDFVTKPFKLRLLERRVQNLIDTR 1212

Query: 122  KSKD 125
            ++  
Sbjct: 1213 RALR 1216


>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L V+    +    R+     G+ V  A +  +A ++   E   +++++D  +     
Sbjct: 5   KQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYL-SEQAFDFIILDVGLPDQNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ        + +L    D    + G   GA+ +  KPF+   +   ++ + +
Sbjct: 64  FEVCKQLRQK---YQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120

Query: 120 MQKSKDEN 127
             + + +N
Sbjct: 121 RMEIQAQN 128


>gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|77456488|ref|YP_345993.1| osmolarity response regulator [Pseudomonas fluorescens Pf0-1]
 gi|77380491|gb|ABA72004.1| DNA-binding response regulator [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQ-MDRLLSREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|332711348|ref|ZP_08431280.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332349897|gb|EGJ29505.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 579

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    VR+    L +  GF V  A +         K  +P+ ++ D  M  + 
Sbjct: 2   MRKILVIEDEEFVRENIIELLDAEGFDVIGAENGRVGVNLA-KGTIPDLIICDVMMPEMD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ  +   V   +L  +        G   GA+ ++ KPF R  L  ++    
Sbjct: 61  GYSVLTSLRQDSMMATVPFIFLTAKAAKNDFRQGMELGADDYITKPFTRAELLGSIASRL 120

Query: 119 QMQKS 123
           + + +
Sbjct: 121 KKKAA 125


>gi|300865282|ref|ZP_07110096.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336755|emb|CBN55246.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 663

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +    +V     ++ G+ V    +   A         P+ +++D  M      
Sbjct: 12  NILIVDDTPENLQVLSATLSESGYKVRGVINGKMAVRAARSAP-PDLILLDIRMPDTNGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++     + + V ++    +    +   + G   ++ KPF  E +   +     +
Sbjct: 71  EVCEELKADSQTSKIPVIFISALDEVLDKVKAFQVGGEDYITKPFQVEEVVARVEHQLTI 130

Query: 121 QKSKD----ENQFLD 131
           Q+ +     +N+ L 
Sbjct: 131 QRLQKQLIQQNEQLQ 145



 Score =  106 bits (265), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 18/142 (12%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD +   R +   L    GF V EA +  +A    +    P+ +++D  M     +
Sbjct: 429 RILVVDDTQENRLLLVKLLQPIGFEVLEAENGEQALTLWDS-WQPHLILLDTRMPVIDGM 487

Query: 61  EFIAHVRQMPLGT---------------DVFVYYLLMEVDFEKMIAGARAGANSFLLKPF 105
           E    +R                        +  L      E+      AG + F+ KPF
Sbjct: 488 EVAIQIRAKEREKQEKSLINHQSPINSYHTVIIALTASAFEERRDEIIAAGCDDFVRKPF 547

Query: 106 NRETLRFAMRELPQMQKSKDEN 127
             + +   M E   ++   ++ 
Sbjct: 548 QEQVIFEKMTEFLGVRYIYEQL 569


>gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 222

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLET-TRIELIITDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D  V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 231

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+ D    + +         GF V +A    EA +  E     + +++D  M G+ 
Sbjct: 1   MQSILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLE-NNQVDLMIVDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118


>gi|189461492|ref|ZP_03010277.1| hypothetical protein BACCOP_02151 [Bacteroides coprocola DSM 17136]
 gi|189431826|gb|EDV00811.1| hypothetical protein BACCOP_02151 [Bacteroides coprocola DSM 17136]
          Length = 1373

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LL+V+    +R   R  F  + + V +  +  EA ++      P+ ++ D  M G    
Sbjct: 1096 TLLIVEDHEELRYYLRKTFEHY-YRVIDVANGKEALDYL-SNEYPDLILSDVMMPGTQGD 1153

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    V++ P    +    L  + +++ ++ G + GA+ ++ KPF+ E L+  +R   + 
Sbjct: 1154 ELCQMVKENPDTAGIPFILLTAKTNYDAVVEGLKKGADDYIPKPFSTEILKLKVRGFIEN 1213

Query: 121  QKSKDENQFLDAI 133
            +  + +     A+
Sbjct: 1214 RNRQRDFFMRQAL 1226


>gi|167945734|ref|ZP_02532808.1| sensor histidine kinase with ATPase domain, two fused [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 415

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ + I ++V   L   FG +V  A     A     +E   + +++D  M  +   
Sbjct: 253 KVLLVEDNPINQQVALELLQSFGLLVLVAEDGRAALRRL-QESAFDLVLMDVQMPLMDGY 311

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +RQ P    + V  +              AG + +L KP +   L   +R   
Sbjct: 312 ETTRQIRQQPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWL 369



 Score = 89.1 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF--------CEKELLPNYLVIDE 54
            +LLVD + +VR V   +   F F V    +  EA E           K      +++D 
Sbjct: 102 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMDW 161

Query: 55  SME--GVLEFIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
            M     ++ + H++Q         +  +      E M     AG ++ LLKP N   L 
Sbjct: 162 HMPPVNGIDAVQHIKQELALVQQPKMILVTAFGREELMQQSQAAGLDAVLLKPANPSLLF 221

Query: 112 FAMRELPQMQKSKDE 126
             +  + +      E
Sbjct: 222 DTIMSVFKESGRGRE 236


>gi|113477574|ref|YP_723635.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110168622|gb|ABG53162.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 440

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     V     +D  F V  AT    A     K  LP+ +++D  M G+  F 
Sbjct: 7   ILVVDDTPANLAVLSEALSDADFEVAIATDGELAITQA-KLSLPSLILLDVMMPGIDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +   +  ++ + ++    D    + G   GA  ++ KPF    L   ++   ++ 
Sbjct: 66  TCRRFKACNITKNIPIIFMTALSDCIDKVKGLSLGAVDYVTKPFQEAELIARVKTQLKLY 125

Query: 122 KSKDENQF 129
              +  + 
Sbjct: 126 HLTENLEQ 133


>gi|309792183|ref|ZP_07686655.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Oscillochloris trichoides DG6]
 gi|308225724|gb|EFO79480.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Oscillochloris trichoides DG6]
          Length = 376

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 8/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +R          G+    A +     E  ++E  P+ ++ D +M  + 
Sbjct: 1   MAKILLIEDEPTIRDEVLDWLQFEGYEALGAPNGRLGLELIQREH-PDLILCDIAMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  VR     + +   +L    D E +  G   GA+ +L KPF+   L   +R   
Sbjct: 60  GHEVLLEVRASMRFSTIPFVFLTASADREAIRKGMDMGADDYLTKPFSHTELLNTVRSRL 119

Query: 119 QMQKSKDEN-----QFLDA 132
           + ++ ++E      Q L A
Sbjct: 120 RKKEIQEEQMHNRLQMLAA 138


>gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 232

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VRK+ + +    G +V +A +  EA      E   + +++D  ME +  +
Sbjct: 5   RVLVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMI-SEGPFDLVLLDIMMEDIDGY 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   +G    + +L  + +    I G   GA++++ KPF+   L   ++   +  +
Sbjct: 64  DVLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIKRYR 123

Query: 123 SKDENQFLDA 132
              E++   +
Sbjct: 124 QLQESKQQAS 133


>gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 239

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K+     +  GF    A+    A      E   + LV+D  M G+  
Sbjct: 6   QRILVVDDEKELAKMICDYLSAMGFTSESASDGPRAL-RLIGEKEWDLLVLDVMMPGLDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++     + + +L    +    I G   G + ++ KPF+ + L   +R + +  
Sbjct: 65  FDVA-RKVRADRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRS 123

Query: 122 KS 123
            S
Sbjct: 124 AS 125


>gi|282895905|ref|ZP_06303945.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199150|gb|EFA74019.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 369

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD       + R L    G+ +   +    A +   +   P+ +++D  M  +   
Sbjct: 11  RILVVDDIRDNLILVRTLLESEGYAIDSVSDGATALQKTVQSP-PDLILLDVMMPEMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  +    D   ++ G  AGA+ F+ KPF+   L   +R L ++
Sbjct: 70  EVTRTIRSYTNIGYVPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLRL 128

Query: 121 QKSKDENQFLD 131
           + S DE Q + 
Sbjct: 129 KHSIDEQQKMS 139


>gi|254712298|ref|ZP_05174109.1| Probable transcriptional regulator ycf27 [Brucella ceti M644/93/1]
 gi|254715370|ref|ZP_05177181.1| Probable transcriptional regulator ycf27 [Brucella ceti M13/05/1]
 gi|261217099|ref|ZP_05931380.1| two-component system response regulator [Brucella ceti M13/05/1]
 gi|261319969|ref|ZP_05959166.1| two component system response regulator [Brucella ceti M644/93/1]
 gi|260922188|gb|EEX88756.1| two-component system response regulator [Brucella ceti M13/05/1]
 gi|261292659|gb|EEX96155.1| two component system response regulator [Brucella ceti M644/93/1]
          Length = 238

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEILDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRSPQRALTQI 135


>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
 gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
          Length = 227

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     GF V       EA E   +E LP+ L++D  + G   +
Sbjct: 4   KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERLPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 121 QKSK 124
            K +
Sbjct: 123 AKPE 126


>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 253

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             L+VD    +  V         F V  A +  +A     +E+ P+ +V+D  + G+   
Sbjct: 19  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLA-REIDPDVVVLDLGLPGMDGI 77

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +D +V  L         I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 78  EVCRELR---TFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 134

Query: 121 QK 122
            +
Sbjct: 135 PR 136


>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V    +     +   +E   + L++D  + GV 
Sbjct: 1   MSRILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEED-FDLLILDLMLPGVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R++    +  +  +  + D    I G   GA+ ++ KPF+   +   ++     
Sbjct: 60  GF-EICRKVREAKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118

Query: 121 QKSK-----DENQFLD 131
            +        EN+ ++
Sbjct: 119 YERLIGSGMPENEIIE 134


>gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 236

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +         + V  A     A +  + E  P+ +++D ++     
Sbjct: 4   QKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFD-EFNPDLVILDVNLPDTTG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  ++M   T VFV  L         I G   GA+ ++ KPF    L   +R + + Q
Sbjct: 63  F-ALCQEMQDRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQ 121

Query: 122 KSKDENQF 129
           +S ++ + 
Sbjct: 122 RSVEDTEM 129


>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
 gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
          Length = 228

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  R    +  ++V  A S  E   +   E   + +++D  + G+  F
Sbjct: 2   KILVVEDELKLAEYLRKALTENSYVVDVAHSGTEG-RYLAIEGHYDLVLLDVMLPGLDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A +R++     V V  L      E  + G +AGA+ +L+KPF    L   ++ L + 
Sbjct: 61  -AVLRELRRDKHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRR 117


>gi|126658457|ref|ZP_01729605.1| CheY subfamily protein [Cyanothece sp. CCY0110]
 gi|126620199|gb|EAZ90920.1| CheY subfamily protein [Cyanothece sp. CCY0110]
          Length = 121

 Score =  135 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+ S   +K+   +    G+ V  A    +A E   K+  P+ +V+D  M  + 
Sbjct: 1   MRAVLVVEDSPAQQKMIATILKKNGWQVIIAEDGFQALESI-KDSSPDLIVLDIVMPKMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V +     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYISKPFEDIELIGTIQQLL 119

Query: 119 QM 120
           + 
Sbjct: 120 RQ 121


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +V +      G+    A +  +       E   + +++D  +  + 
Sbjct: 1   MSKILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKF-HEDEYDLVLLDVMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 R       V V  L  + + E  + G   GAN ++ KPF  + L   +R   +
Sbjct: 60  GLEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALR 118


>gi|218246324|ref|YP_002371695.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|257059371|ref|YP_003137259.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
 gi|218166802|gb|ACK65539.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|256589537|gb|ACV00424.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
          Length = 374

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      ++   +  + G+ V    +  +A    + E  P+ +++D  M  +    
Sbjct: 11  ILIVDDIPENLQLLFTMLTEQGYEVRRVLNGKQALNAAKIEP-PDIILLDIKMPDLDGYQ 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V +L    D    +     G   ++ KPF  + +   +    ++ 
Sbjct: 70  VCEKLKSTETTRDIPVIFLSALNDAFDKVKAFEVGGVDYITKPFQLQEVIIRVENQLKLL 129

Query: 122 KSKDE 126
           K + +
Sbjct: 130 KMQQQ 134


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V          +   KE   + L++D  + G  
Sbjct: 1   MSKILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDY-DLLILDLMLPGTD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    +  +  +  + +    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICKRVREV---KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
 gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC
           43184]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ +      G+ V  A S  EA +          L++D  M  + 
Sbjct: 3   MPKILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKMDIASYQ--LLLLDVMMGEIS 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F   + +++     D+ + +L  +     M+ G   GA+ ++ KPF+   +   ++ + 
Sbjct: 61  GFKMASILKKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVL 120

Query: 119 QM---QKSKDENQFLD 131
           +    ++   EN+ L 
Sbjct: 121 RRTSDKEKVPENECLK 136


>gi|152985847|ref|YP_001347317.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7]
 gi|150961005|gb|ABR83030.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7]
          Length = 242

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLVD    +R++     +  GF V   +   + R+   +E      ++D  +     
Sbjct: 6   RSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEAI-LAILDVMLPDEDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R       + +  L    D    + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  FSLCRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLR 124

Query: 120 MQK 122
             +
Sbjct: 125 RAQ 127


>gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 222

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ++ G+MV  A     A    ++   P+ +++D  M G+  F 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQR-RRPDLILLDAMMPGMDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P  +++ V ++    D E ++ G  AGA  +++KP     +   +    +  
Sbjct: 72  TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131

Query: 122 KSKDENQ 128
           ++    +
Sbjct: 132 RTLQSAR 138


>gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++     +  G+   +ATS  EA +  E +   + +++D  M  + 
Sbjct: 5   MVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE-QKEFDIILLDVMMPSMD 63

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   ++V +  L        M+ G   GA+ ++ KPF+   L   +  + 
Sbjct: 64  GWDTCYQIRQI---SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 120

Query: 119 QMQK 122
           +  K
Sbjct: 121 RRTK 124


>gi|107025470|ref|YP_622981.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|254249878|ref|ZP_04943198.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|105894844|gb|ABF78008.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|124876379|gb|EAY66369.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   + +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALD-DGAPDLIVLDLMLPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
 gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
 gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
 gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
 gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
 gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
 gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 235

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ + +  +R     +    G+    A +  +A     ++  P+++++D  M  + 
Sbjct: 1   MK-ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQ-QPDFIILDIMMPELD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        + +L  + +    + G   GA+ ++ KPF    +R  ++ + 
Sbjct: 59  GYKVCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIV 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|313682907|ref|YP_004060645.1| pas/pac sensor protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155767|gb|ADR34445.1| putative PAS/PAC sensor protein [Sulfuricurvum kujiense DSM 16994]
          Length = 467

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           ++L+VD      +V  ++  +     +  A +  +A +  EK    + +++D  M     
Sbjct: 8   TILVVDDEPRNIQVVSNVLKEINECHIIYAVNGEQALQRVEKNE-IDLILLDMMMPLLDG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    ++     + + + +L  + D E +I G  AGA  ++ KPF R  L   +     
Sbjct: 67  LETCKRLKADSRYSSIPIVFLTAKNDEESLIKGFEAGAVDYISKPFLRRELIARVTTHLN 126

Query: 120 MQKSKD 125
           ++ ++ 
Sbjct: 127 LRSAQK 132


>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+++    V  + R    + G+    A                + ++ D  +  + 
Sbjct: 1   MYSILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L      +  + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 60  GFELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKR 119

Query: 121 Q 121
           +
Sbjct: 120 K 120


>gi|297568936|ref|YP_003690280.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924851|gb|ADH85661.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfurivibrio alkaliphilus AHT2]
          Length = 467

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+  + L  + G+ V  A     A E   +E   + L+ D  M    
Sbjct: 1   MKRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDY-DLLISDIRMPPPN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                VR   +  ++ V  +      +  ++  ++GA  ++ KPF  + ++  +    
Sbjct: 60  GLELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTAL 117


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL++    V    R    + G+ V  A       +    E     +++D  + G+ 
Sbjct: 1   MK-LLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMA-TENNFQLIILDVMLPGMN 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ  L     +  L      E ++AG  +GA+ +L+KPF +  L   +R L 
Sbjct: 59  GIAVCKALRQQQLT--TPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIY-DAILLDVMMPEMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    GF         +A E   +E  P+ +++D  + G 
Sbjct: 1   MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAF-RETRPDLVLLDLMLPGA 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   MR  
Sbjct: 60  DGIDVCRQIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRAR 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 LRRTE 121


>gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA +    E   N +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSE-QFNLILMDIMMPKLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++   T++ + +L  +   +  I G  +G + ++ KPF+   L   +  + + 
Sbjct: 63  -EAIKRIRRLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+++    + +          F    A       E  E E   + +++D  +     
Sbjct: 3   KKILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESE-QFDCILLDVMLPQLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+    ++V +  +    +    ++G  AGA+ +++KPF  E L   +R + +
Sbjct: 62  IEVCRRIRK---TSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILR 118

Query: 120 MQKSKDENQFL 130
             +   +++ L
Sbjct: 119 RVQPAQKSKQL 129


>gi|293608422|ref|ZP_06690725.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828995|gb|EFF87357.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 319

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + +  R       F V  A     A E       P+ +V+D  +  + 
Sbjct: 1   MSRVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHP-PDLVVLDLGLPDLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++ + T V +  L   V     +    AGA+ ++ KPF+ + L   +R + + 
Sbjct: 60  GV-EVIRRLRVWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRR 118


>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 233

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     EK  + + +V+D  M  +   
Sbjct: 5   TILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEV-HLVVLDIMMPKIDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKIREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRR 120


>gi|166710603|ref|ZP_02241810.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 259

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 28  VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  +S
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQS 146

Query: 124 KDEN 127
            +E 
Sbjct: 147 SNEQ 150


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R      GF    A++  E     +     + +++D  + G+ 
Sbjct: 1   MKRILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEY-SLILLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R+M    D+ +  +    +    I G   GA+ +++KPFN   L   ++     
Sbjct: 60  GF-QLCREMREFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTAR 118


>gi|116621165|ref|YP_823321.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116224327|gb|ABJ83036.1| GAF sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 2384

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 2/126 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +       V  A +     E   K    + +++D  M  +  
Sbjct: 2252 KKVLVVDDDVRNIFALTSVLEQHHLQVVHAENGRAGIETLLKTPDVDGVLMDIMMPEMDG 2311

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +RQ+     + +  +  +           AGA+ ++ KP + + L   +R    
Sbjct: 2312 YETTRAIRQIAEFRTLPIIAVTAKAMKGDRAKCIEAGASDYITKPVDLDQLFSVLRVWLI 2371

Query: 120  MQKSKD 125
              +   
Sbjct: 2372 RSRESQ 2377



 Score = 83.7 bits (207), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      ++   + +D G     A     A     +E  P  + +D ++  ++   
Sbjct: 1986 LLIIEDDVTFARILMDMAHDRGIRALVALRGGTALSLA-REFNPGAITLDINLPDMVGWT 2044

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             +  ++  P    + V+ +      E    G   GA S+L K   +ETL      +    
Sbjct: 2045 ILDRLKHDPATRHIPVHVITG---DENRRRGLGLGAVSYLEKSVTKETLNSAFDTIHRSL 2101

Query: 119  QMQ 121
            + +
Sbjct: 2102 ERR 2104



 Score = 35.2 bits (81), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LLLV      R   +         +  A S  EA     K    + LV+D ++  +  
Sbjct: 2106 KKLLLVSPDEERRATWQRSLAGPDIEMIAAGSGGEALAVV-KHQYLDGLVLDLNLADIPA 2164

Query: 60   LEFIAHVRQMPLGTDVFVYY 79
            L+    V+         + +
Sbjct: 2165 LQLAEEVQSATDPQTPPMIF 2184


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++   ++  V         + V  A       E+ +     + ++ D  +  +   
Sbjct: 2   RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNY-DLILTDVVLPKLDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    +  +  + +    I G  AGA+ +L+KP N   L+  +R L + 
Sbjct: 61  TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR 118



 Score =  115 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD   ++      +   +G  +          E  +    P+ L++D  M     +
Sbjct: 501 NVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQS-TAPDLLILDVEMPHISGI 559

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR  P   ++ + +L    + E +     AG + +++KP     L   +    + 
Sbjct: 560 ELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619

Query: 121 QKSKD 125
            +   
Sbjct: 620 SRLLQ 624



 Score = 40.9 bits (96), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL+D    +    + +    G    + T+  EA +   +   P+ +V++    G  E 
Sbjct: 376 KLLLIDPDLQLGSQLQQVAYSMGMRWQQITT-LEAAKNFLQTTSPDLVVLNVDEIGQREE 434

Query: 63  IAHVRQM--PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +          + V  L +       +  A++GA  FLLKP     +     ++ Q 
Sbjct: 435 TLALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPVAASQVWETASQILQF 494

Query: 121 QKSKDEN 127
            +S   N
Sbjct: 495 TRSLKVN 501


>gi|157373328|ref|YP_001471928.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157315702|gb|ABV34800.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 120

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA++  EA +  +K    + ++ D +M  + 
Sbjct: 1   MKRILAVDDSASMRQMVGFTLKTAGFDVTEASNGDEALKVAQKGEY-DLVISDVNMPVMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R +P      +  L  E   +K   G  AGA  +++KPFN + L   +R++ 
Sbjct: 60  GLTLIRNLRTLPAYKFTPLLMLTTESGTDKKQEGRSAGATGWIVKPFNPDQLLATVRKVL 119


>gi|126659225|ref|ZP_01730363.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619530|gb|EAZ90261.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 635

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    +V         + V  A +   A    +K  LP+ +++D  M  +  F 
Sbjct: 6   ILVVDDNPNNIQVLFQCLKKADYKVLIAQTGESAINQAKK-TLPDLILLDVMMPIMDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + ++ +P   D+ V ++ +  +    + G   GA  ++ KPF +E L   ++    ++
Sbjct: 65  TCSSLKSLPETVDIPVIFMTVLNETFNKVKGFSLGAVDYITKPFIQEELLARVKLHLDLR 124

Query: 122 K----SKDENQFLD 131
                 + +N+FL 
Sbjct: 125 HLTKTLEQQNKFLK 138


>gi|104781516|ref|YP_608014.1| two-component response regulator [Pseudomonas entomophila L48]
 gi|95110503|emb|CAK15211.1| putative two-component response regulator [Pseudomonas entomophila
           L48]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          +      +    + +V+D  M G     
Sbjct: 7   ILVVDDDREIRELVGNYLKKNGLRTSIVADGRQ-MRAFLENNTVDLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +  V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|16767325|ref|NP_462940.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415905|ref|YP_152980.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182520|ref|YP_218937.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161505430|ref|YP_001572542.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161617190|ref|YP_001591155.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551449|ref|ZP_02345204.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991591|ref|ZP_02572690.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232999|ref|ZP_02658057.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237683|ref|ZP_02662741.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244188|ref|ZP_02669120.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263040|ref|ZP_02685013.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467400|ref|ZP_02701237.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821593|ref|ZP_02833593.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194442670|ref|YP_002043284.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451391|ref|YP_002048063.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472068|ref|ZP_03078052.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736327|ref|YP_002116983.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250942|ref|YP_002148990.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264290|ref|ZP_03164364.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364834|ref|YP_002144471.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198245082|ref|YP_002217986.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388103|ref|ZP_03214715.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930324|ref|ZP_03221301.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354363|ref|YP_002228164.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859247|ref|YP_002245898.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224585872|ref|YP_002639671.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912204|ref|ZP_04656041.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422624|gb|AAL22899.1| response reguator in two-component regulatory system with CpxA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56130162|gb|AAV79668.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130153|gb|AAX67856.1| response reguator in two-component regulatory system with CpxA,
           regulates expression of protein folding and degrading
           factors (OmpR family) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|160866777|gb|ABX23400.1| hypothetical protein SARI_03585 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366554|gb|ABX70322.1| hypothetical protein SPAB_05031 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401333|gb|ACF61555.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409695|gb|ACF69914.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458432|gb|EDX47271.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711829|gb|ACF91050.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630213|gb|EDX48853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096311|emb|CAR61912.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197214645|gb|ACH52042.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242545|gb|EDY25165.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289336|gb|EDY28701.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939598|gb|ACH76931.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605201|gb|EDZ03746.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320728|gb|EDZ05930.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274144|emb|CAR39155.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323751|gb|EDZ11590.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330025|gb|EDZ16789.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332758|gb|EDZ19522.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336884|gb|EDZ23648.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341789|gb|EDZ28553.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348222|gb|EDZ34853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206711050|emb|CAR35422.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224470400|gb|ACN48230.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261249176|emb|CBG27037.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996354|gb|ACY91239.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160567|emb|CBW20097.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915175|dbj|BAJ39149.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088470|emb|CBY98229.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225352|gb|EFX50410.1| Copper-sensing two-component system response regulator CpxR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322613178|gb|EFY10122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619195|gb|EFY16078.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322626061|gb|EFY22873.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626479|gb|EFY23285.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632408|gb|EFY29156.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635110|gb|EFY31831.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642687|gb|EFY39277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647976|gb|EFY44448.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650726|gb|EFY47127.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652909|gb|EFY49246.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657224|gb|EFY53504.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662288|gb|EFY58503.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666823|gb|EFY62999.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672093|gb|EFY68208.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675815|gb|EFY71887.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681769|gb|EFY77795.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684036|gb|EFY80045.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717018|gb|EFZ08589.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323132404|gb|ADX19834.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193308|gb|EFZ78523.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197665|gb|EFZ82798.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200761|gb|EFZ85832.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207234|gb|EFZ92186.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211436|gb|EFZ96277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218518|gb|EGA03226.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220999|gb|EGA05431.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225975|gb|EGA10194.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231655|gb|EGA15767.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236096|gb|EGA20174.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239482|gb|EGA23531.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243924|gb|EGA27935.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249287|gb|EGA33204.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250470|gb|EGA34353.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258924|gb|EGA42576.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260169|gb|EGA43792.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265288|gb|EGA48785.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270510|gb|EGA53956.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625777|gb|EGE32122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629490|gb|EGE35833.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990888|gb|AEF09871.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
 gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 234

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++        GF  +EA    +A +    ++  + +++D  M  +  F
Sbjct: 13  NILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKI-NQVKVDMVILDIMMPNMDGF 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 72  DVCFELRK---YYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128

Query: 121 QK 122
            +
Sbjct: 129 YQ 130


>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
 gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R +        G+ V  A     A         P+ +V+D  +     F
Sbjct: 15  TVLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQA-GSRRPDLIVLDVMLPDTDGF 73

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G    V +L      E  I G  +G + ++ KPF+ + +   +R + + 
Sbjct: 74  RLTRELRAQ--GVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRR 131

Query: 121 QKS 123
             +
Sbjct: 132 AGA 134


>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
 gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1829

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M++  +
Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827


>gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D    +R++        G  V  A    EA E   + + P+ +V+D  M  +  F
Sbjct: 10  KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELF-RSVEPDVVVLDVMMPELDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R     ++V V  L    D    I G   GA+ +++KPF+ + L   ++ + + 
Sbjct: 69  AVLERIRAQ-SEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRR 125


>gi|315649065|ref|ZP_07902158.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
 gi|315275500|gb|EFU38855.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
          Length = 888

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            LL+VD   +  KV R L +  G+ +   T   EA    E+    + ++ D  M  +   
Sbjct: 556 RLLVVDDDPVNLKVIRGLLSGEGYWITVVTQAEEALRLLEQAEW-DLIISDVMMPQMSGY 614

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ  +  ++ +  L      E +  G  +GAN +L+KP +   L+  +R L ++
Sbjct: 615 ELSRRIRQRYMLAELPILLLTARSQPEDIHMGFMSGANDYLIKPVDHLELKTRVRALLEL 674

Query: 121 QKSKDENQFLDA 132
           ++S  E   ++A
Sbjct: 675 KRSIQERLHMEA 686


>gi|315607709|ref|ZP_07882703.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315250645|gb|EFU30640.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1321

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R     +     + V  A +  E  E   +E +P++++ D SM  +   
Sbjct: 1036 TILVVEDNSDLRTFLYSILGR-DYNVIMAENGKEGLEMAIRE-MPDFILTDVSMPVMDGL 1093

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + +  L      +    G R G + ++ KPF+   L+  +  +   
Sbjct: 1094 TMVHHIKQNKDISHLPIIILSARASMKDQEQGLREGVHGYITKPFSAAYLKGRIENILAH 1153

Query: 121  QKSKDENQFLDAI 133
            QK   + + L+ I
Sbjct: 1154 QKMY-QQKALEQI 1165


>gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 240

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LL +    +R          G+ V       EA     +   P+ LV+D  M G+  
Sbjct: 3   QTVLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRN-RPDVLVLDVMMPGIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G    V  L   V+    IAG  AGA+ +++KPF+ E +   +R L +
Sbjct: 62  LQVCRVLRA--EGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 237

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    +R+         G+ VF+A    E  +  ++E   +  ++D  M  +    
Sbjct: 6   ILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREE-IHLAIVDVMMPRMDGIT 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             V+      D  V  L  + +    I G   GA+ ++ KPF    L   +    +  K
Sbjct: 65  MTVKLREAY-DFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYK 122


>gi|254881220|ref|ZP_05253930.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_3_47FAA]
 gi|254834013|gb|EET14322.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_3_47FAA]
          Length = 311

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R   R LF+   + +  A +  E      KE +P+ ++ D  M  +  F
Sbjct: 51  KLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKE-IPDLVITDVMMPVMNGF 108

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + +  L    D E ++ G   GA+ ++LKPFN E LR  ++ L   
Sbjct: 109 ECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLI-- 166

Query: 121 QKSKDENQFL 130
            KS+ E + +
Sbjct: 167 -KSRTELKRI 175


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+    + +         G+ V          E        + +++D  +    
Sbjct: 1   MTNILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKAL-NNDFDLIILDLMLPNIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VRQ+       +  +  + D    + G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLEICRRVRQV---QSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPHKD 123


>gi|170737378|ref|YP_001778638.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169819566|gb|ACA94148.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   + +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALD-DGAPDLIVLDLMLPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
 gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELAKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 221

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      + +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---MPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF          A    ++    + +++D  + G+ 
Sbjct: 1   MTSVLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGA-DIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKQLRSRSG---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|88800460|ref|ZP_01116024.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
 gi|88776790|gb|EAR08001.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Reinekea sp. MED297]
          Length = 561

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ D +   R + R +    G  V  A +  EA    E    P+ +++D  M  +   
Sbjct: 6   RILIADDNETDRMILRTIVRKEGHEVLLAANGEEAVHLFETG-RPDLILLDVLMPVMDGV 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V + +L    D E +     +G + FL KP+NR  L+  ++   +M
Sbjct: 65  RAAEEIRKDTRRAYVPIIFLTSLQDAESLAQCLDSGGDDFLSKPYNRVILKAKIKAFGRM 124

Query: 121 QKSKDENQ 128
           +   ++ Q
Sbjct: 125 RHMHEKLQ 132


>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H + ++      + G+    A +  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  V+++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQKQ 122


>gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 266

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    + ++         + V   +S     E       P+ LV+D  M G+ 
Sbjct: 31  MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTN-RPDCLVLDIMMPGID 89

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + + Q+   T++ +  +    +    I G   G + FL KPFN   L   ++ + ++
Sbjct: 90  GL-SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRL 148

Query: 121 QKS 123
            K+
Sbjct: 149 SKA 151


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
            Paraca]
          Length = 1081

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ + +              G+ +  A    +A +  + E  PN +++D  M G+    
Sbjct: 964  ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSES-PNLILMDIQMPGIDGLE 1022

Query: 64   A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A   +RQ+P  T V +  L              AGAN ++ KP   + L   ++E+ 
Sbjct: 1023 AINRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1079


>gi|283787411|ref|YP_003367276.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950865|emb|CBG90542.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
 gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   I+ K  + +     + V  A    EA E+ +  +  + +++D  M      
Sbjct: 2   RILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIY-DLMILDVMMPKLNGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+   G  + +  L  +   E  I G   GA+ +L KPF++  L   +  L + 
Sbjct: 61  QVARQLRKEKNG--LPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR 118

Query: 121 QKSK 124
           Q  +
Sbjct: 119 QGQE 122


>gi|220909116|ref|YP_002484427.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219865727|gb|ACL46066.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 121

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+ S   R++   L ++ G  V  AT   EA E     + P+ +V+D  M  + 
Sbjct: 1   MSKVLVVEDSVPQREMISELLSNSGLTVAVATDGVEAIEQLHI-IQPDIVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P  + V V     + +      G + GA++++ KPF  + L   +++L 
Sbjct: 60  GYEVCRQIKSDPKTSHVPVVICSSKSEDFDRYWGKKQGADAYIAKPFQPKELIGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|158335119|ref|YP_001516291.1| response regulator receiver domain-containing protein
           [Acaryochloris marina MBIC11017]
 gi|158305360|gb|ABW26977.1| response regulator receiver domain protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 595

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           +LL+VD     R +        G+ V  A S   A E          +++D  M G   +
Sbjct: 184 TLLVVDDVEANRDMLSRRLQRKGYEVALADSGEAALELMATTD-IALVLLDIMMPGIGGI 242

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ+    ++ V     +   E ++     GAN ++ KP +       ++   + 
Sbjct: 243 ETLKRIRQIYSQEELPVIMATAKDASENVVEALELGANDYITKPIDLPVALARIQSHLKT 302

Query: 121 QKS--KDENQFLDA 132
           +++      Q L++
Sbjct: 303 REASVAARQQLLES 316



 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 16  VGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGT 73
           +        G+ V  A    E       E  P+ +++D S+  +        ++      
Sbjct: 1   MLGRRLKRRGYDVVIAVDGGEGVTKALTE-QPDLILMDMSLPVMNGWEATRTLKAGDQTA 59

Query: 74  DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-QKSKDENQFLDA 132
            + +  L              AG + +  KP + + L   +  L Q  Q+    +Q L+A
Sbjct: 60  TIPIIALTAHAMVGDREEALAAGCDDYDTKPVDLKRLLQKIETLLQKTQEPSAPSQPLEA 119

Query: 133 I 133
           +
Sbjct: 120 V 120


>gi|116249380|ref|YP_765221.1| two-component histidine kinase/response regulator motif-containing
            protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254030|emb|CAK12427.1| putative repetitive protein with two-component sensor and regulator
            motifs [Rhizobium leguminosarum bv. viciae 3841]
          Length = 2099

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD           +    G  V  AT+  EA +    E     +++D  M G+  +
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R  P    + +  L  +           AGA+ +L KP N E L  A+R     
Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score = 92.2 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    +A     ++  P  + +D  +  +L   
Sbjct: 1713 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALA-QDYRPAAISLDIFLPDMLGWT 1771

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             ++ ++Q P    + V  +      E    G   GA +F+ KP   E L      ++   
Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1828

Query: 119  QMQKSK------DENQFLD 131
            Q ++        +E + L 
Sbjct: 1829 QPRRKHLLLVEDNEAERLS 1847



 Score = 74.1 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LLLV+ +   R     L       +    S  EA     +    + +V+D S+  +  
Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALAALRQNSA-DCVVLDLSLPDMSG 1891

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R      +V V          +  A   + A S ++K   + E L  
Sbjct: 1892 FDVLEQMRDDAEIGEVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945


>gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            + +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 263

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++    F   GF+V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKG-QALALQASPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  +      +  ++G  +GA+ +L KPF+ E L   ++ L + 
Sbjct: 64  LCQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRR 122


>gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO]
 gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
          Length = 222

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D  V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+VD    +  +   +  +  F V  A+   EA +   +  + +  ++D  M  +
Sbjct: 1   MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLL-QNRVFDLCILDIMMPRL 58

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                          + V  L    D    +AG   GA+ ++ KPF    L   ++ L +
Sbjct: 59  DGMEVLHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLR 118

Query: 120 MQKS 123
              S
Sbjct: 119 RAGS 122


>gi|325121840|gb|ADY81363.1| response regulator receiver signal transduction histidine kinase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 319

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + + ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPIIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|315921776|ref|ZP_07918016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313695651|gb|EFS32486.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1315

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   V  A+   EA +   +   P+ +V D  M  +   
Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177

Query: 121  QKSKDE 126
            ++S  +
Sbjct: 1178 RESIKK 1183


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +  + +       + V   T   +A E  +K   P+ +++D  + G+ 
Sbjct: 1   MSRILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDK-FKPSLVILDLMLPGMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E   ++R     + + +  L  ++D    + G   GA+ ++ KPF    L   +    
Sbjct: 60  GYEICQNIRIK---STIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSQ 120


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+    +R++  +     GF V  AT+  EA   C +    + +++D  +     
Sbjct: 3   KHILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNT-FDLVILDIMIPKLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  +R+      + +  +  +        G   GA+ ++ KPF+       ++ + +
Sbjct: 62  LEVLKIIREQAA---LPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIR 118

Query: 120 M-----QKSKDENQFLD 131
                  +++ + + L+
Sbjct: 119 RATKYSSQAEQKQEVLE 135


>gi|299146852|ref|ZP_07039920.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298517343|gb|EFI41224.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1315

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   V  A+   EA +   +   P+ +V D  M  +   
Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177

Query: 121  QKSKDE 126
            ++S  +
Sbjct: 1178 RESIKK 1183


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
            AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
            AHT2]
          Length = 1295

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           +  + G  +  A    EA     +    + +++D  M  +  
Sbjct: 1175 RTVLLVDDDMRNIFALSSVLEEAGLEIVVARDGREALAKLAEHPEIDLVLMDIMMPEMDG 1234

Query: 62   FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            + A   +R+ P    + +  L  +           AGAN +L KP + E L   +R   
Sbjct: 1235 YEAMGEIRRDPARAKLPIIALTAKAMRGDKDKCLAAGANDYLAKPVDPERLLSLLRVWL 1293



 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++       +   L  D G+    A          +    P+ +++D  + G+  
Sbjct: 906  KSLLIIEDDSSFASLLLELARDKGYKGLVAEDGETGLHLADY-FRPSGIILDMGLPGISG 964

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  +++ P    + V+++       ++    + GA  FL KP + + L     ++  
Sbjct: 965  REVMERLKKNPETRHIPVHFISASDPSNEV---MQLGAVGFLTKPVSVDKL----EQVFG 1017

Query: 120  MQKSKDEN 127
              +   EN
Sbjct: 1018 RIEKLAEN 1025



 Score = 76.4 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
              LL+V+   + R+  R +  + G   V EA    EA      E   + +++D  +  + 
Sbjct: 1028 KRLLVVEDDMVQRQAIRAMVGEGGDIEVVEAADGEEAHRLLGTEH-FDCVILDLGLGDMS 1086

Query: 61   EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103
             F  +  ++     + V V                +  A+S ++K
Sbjct: 1087 GFDLLTKIKDDQRISQVPVVIYTGREISPDEEERLQQYADSIIIK 1131


>gi|260173505|ref|ZP_05759917.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1273

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   V  A+   EA +   +   P+ +V D  M  +   
Sbjct: 1017 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1075

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1076 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1135

Query: 121  QKSKDE 126
            ++S  +
Sbjct: 1136 RESIKK 1141


>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + +      GF V  A+      +        +  V+D  M  + 
Sbjct: 1   MHKILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSN-QFDLAVLDVMMPKMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +  +   + + V  L    D      G   GA+ ++ KP     L   +R + + 
Sbjct: 60  G-IETLGLIRKSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRR 118

Query: 121 QKSKDE 126
            K   E
Sbjct: 119 AKPTQE 124


>gi|238920098|ref|YP_002933613.1| acetoacetate metabolism regulatory protein AtoC [Edwardsiella
           ictaluri 93-146]
 gi|238869668|gb|ACR69379.1| acetoacetate metabolism regulatory protein AtoC, putative
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    VR++    F   G   ++A++  EA + C  +  P+ +++D  M 
Sbjct: 1   MKSRYRILIVDDEENVRRMLTTAFALQGHETYDASNGEEALQ-CFADAPPDVVLMDIRMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +    A            V  +    +    +   R+GA  +++KPF+ E L   +R  
Sbjct: 60  TMSGIDALKIMRTRQPRTPVILMTAYAEVATAVEALRSGAFDYVIKPFDLEELNLLIRRA 119

Query: 118 PQMQKSKDENQFL 130
            Q+Q  K E + L
Sbjct: 120 LQLQAMKQEIRSL 132


>gi|237723233|ref|ZP_04553714.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229447755|gb|EEO53546.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1315

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   V  A+   EA +   +   P+ +V D  M  +   
Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177

Query: 121  QKSKDE 126
            ++S  +
Sbjct: 1178 RESIKK 1183


>gi|170681202|ref|YP_001744414.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
           SMS-3-5]
 gi|170518920|gb|ACB17098.1| sigma-54 dependent response regulator AtoC [Escherichia coli
           SMS-3-5]
          Length = 461

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRTLQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R +         F V  A    E R+          +V+D  + G   LE
Sbjct: 7   ILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHY-QIVVLDLMLPGESGLE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +V +  L    +    I G   GA+ ++ KPFN   L   +R + +  
Sbjct: 66  LARWLRGQA---NVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRS 122

Query: 122 KSKDENQ 128
               E +
Sbjct: 123 SEAPETR 129


>gi|160886361|ref|ZP_02067364.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483]
 gi|293372788|ref|ZP_06619169.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|156108246|gb|EDO09991.1| hypothetical protein BACOVA_04371 [Bacteroides ovatus ATCC 8483]
 gi|292632297|gb|EFF50894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1315

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   V  A+   EA +   +   P+ +V D  M  +   
Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1118 ELCKNIKEDITISHIPIILLTARDDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177

Query: 121  QKSKDE 126
            ++S  +
Sbjct: 1178 RESIKK 1183


>gi|94263964|ref|ZP_01287766.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455636|gb|EAT05818.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 302

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L VD S +  K+   +  +  + V  AT   +A      + LP+ +++D  M  +   
Sbjct: 9   TILAVDDSPMNIKILHDIL-NQDYRVIFATGGADALTIA-ADSLPDLILLDIMMPEMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + ++    + E    G   GA  ++ KP N+  ++  ++   ++
Sbjct: 67  EVCRRLKADPRTQRIPIIFVTAMTEREDEAKGLELGAIDYITKPVNQAVVKARVKNHLEL 126

Query: 121 QKSKD 125
           ++ +D
Sbjct: 127 KRYQD 131


>gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 231

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +  V+    VR++  +     GF      +  E      K  +P+ +++D  + G  
Sbjct: 1   MQKIYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVL-KNNVPDLILLDIMLPGID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  VR+ P      +  L         I G   GA+ ++ KPF    L   ++ + 
Sbjct: 60  GIEILKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPY-DLVLLDLGLPKRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRALRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKD 125
           Q  + 
Sbjct: 119 QSGRS 123


>gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 239

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +        G  V  A    EAR   +     + LV+D  M G   
Sbjct: 5   THILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAG-AFDLLVLDIMMPGEDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         + +L    +    I G   GA+ ++ KPFN   L   +R + +
Sbjct: 64  ISLCRDIR---DSNSAPIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIR 120

Query: 120 MQKS 123
             +S
Sbjct: 121 RAQS 124


>gi|218248993|ref|YP_002374364.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|257062078|ref|YP_003139966.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
 gi|218169471|gb|ACK68208.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|256592244|gb|ACV03131.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
          Length = 122

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+ +   R++   L N  GF    A S  +A  + +   LP+ +++D  M G  
Sbjct: 1   MPNILVVEDTQSERQLISALLNYAGFTTAAACSAEDAWNWLDTNPLPDLILLDIIMPGET 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    +R  P   +V + +   + +        R G + ++ KPF  +     +    
Sbjct: 61  GLDLCRKIRSHPQWKEVPILFCSSKAEEFDRFWALRQGGSDYITKPFAPQQFLDTVSRYV 120

Query: 119 Q 119
           Q
Sbjct: 121 Q 121


>gi|157147296|ref|YP_001454615.1| DNA-binding transcriptional regulator CpxR [Citrobacter koseri ATCC
           BAA-895]
 gi|157084501|gb|ABV14179.1| hypothetical protein CKO_03088 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|95931065|ref|ZP_01313792.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
 gi|95132874|gb|EAT14546.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
          Length = 471

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   ++R+  + +    G+ V  ATS   A E  + +     ++ D  M G+  +
Sbjct: 5   RILVVDDEAVIREAVKRILEQEGYEVITATSGHTALEKVQIDD-FTVVISDLKMPGMGGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  ++ +    DV V  +      E  +   + GA  +L KPF    ++  + +  + 
Sbjct: 64  EVLKSIKILQ--PDVPVIIITGYATVETAVDAIKNGAFDYLSKPFTPPQVKEMVNKAIEQ 121

Query: 121 QKSKDE 126
           +K   E
Sbjct: 122 RKLSGE 127


>gi|84393277|ref|ZP_00992038.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01]
 gi|84376102|gb|EAP92989.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01]
          Length = 222

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G+ V        A EF +   + + +++D  +  + 
Sbjct: 2   MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSHPV-DLVLLDVMLPNLS 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I   R++       +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 61  G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 119

Query: 121 QKSKDENQFLDA 132
              + + Q L +
Sbjct: 120 VGFERQRQSLAS 131


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIETEKK 127


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +R+V    F    + V+EA +  +A       + P+ +++D  M  +  
Sbjct: 3   KRVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDAL-IWLDSVQPDLIILDIMMPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR       V +  L  +   +  I G   GA+ ++ KPF+ + L      L +
Sbjct: 62  WEVCRQVRSRSG---VPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMK 118

Query: 120 MQK 122
             +
Sbjct: 119 RVE 121


>gi|323527545|ref|YP_004229698.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384547|gb|ADX56638.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   +  + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 895

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    + +  R   +   + V EA    EA E   K    + +++D  M     +E
Sbjct: 511 ILIADDEPEMMRFLRSQLSGR-YRVDEARDGAEALEIASKRRH-HLILLDFMMPQVDGIE 568

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+MP    V +  L    D E       AGA  FL KPF+   L    R L  + 
Sbjct: 569 ATRRLREMPSHRGVPIIILTARADEEVKFQALDAGATDFLTKPFSSTELLARCRNLASVY 628

Query: 122 KSKDENQ 128
           + + + +
Sbjct: 629 EMQQQIE 635


>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 511

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L++D +     +   +  + G+ V   T            + P+ +++D +M  +   E
Sbjct: 13  ILVIDDTPENLNLLSAMLTEQGYKVRSVTKGSTGLRGANA-VPPDLILLDVNMPEMNGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
              H++       + V ++    D    +     G   ++ KPF  E +   +       
Sbjct: 72  VCEHLKASDRTRKIPVIFISALGDVLDKVKAFAVGGVDYITKPFQLEEVLARIENHLTIW 131

Query: 120 --MQKSKDENQFLD 131
              Q+ + +N+ L 
Sbjct: 132 KLQQQLQAQNERLQ 145


>gi|15804502|ref|NP_290542.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 EDL933]
 gi|15834092|ref|NP_312865.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131752|ref|NP_418348.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. MG1655]
 gi|24115208|ref|NP_709718.1| DNA-binding transcriptional regulator CpxR [Shigella flexneri 2a
           str. 301]
 gi|30064793|ref|NP_838964.1| DNA-binding transcriptional regulator CpxR [Shigella flexneri 2a
           str. 2457T]
 gi|74314413|ref|YP_312832.1| DNA-binding transcriptional regulator CpxR [Shigella sonnei Ss046]
 gi|82546262|ref|YP_410209.1| DNA-binding transcriptional regulator CpxR [Shigella boydii Sb227]
 gi|82778920|ref|YP_405269.1| DNA-binding transcriptional regulator CpxR [Shigella dysenteriae
           Sd197]
 gi|89110116|ref|AP_003896.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. W3110]
 gi|157158151|ref|YP_001465405.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           E24377A]
 gi|157163386|ref|YP_001460704.1| DNA-binding transcriptional regulator CpxR [Escherichia coli HS]
 gi|168748793|ref|ZP_02773815.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4113]
 gi|168755594|ref|ZP_02780601.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4401]
 gi|168761707|ref|ZP_02786714.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4501]
 gi|168768212|ref|ZP_02793219.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4486]
 gi|168775255|ref|ZP_02800262.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4196]
 gi|168780827|ref|ZP_02805834.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786766|ref|ZP_02811773.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC869]
 gi|168799510|ref|ZP_02824517.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC508]
 gi|170022076|ref|YP_001727030.1| DNA-binding transcriptional regulator CpxR [Escherichia coli ATCC
           8739]
 gi|170083383|ref|YP_001732703.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683339|ref|YP_001746250.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           SMS-3-5]
 gi|187731406|ref|YP_001882606.1| DNA-binding transcriptional regulator CpxR [Shigella boydii CDC
           3083-94]
 gi|188492588|ref|ZP_02999858.1| transcriptional regulatory protein CpxR [Escherichia coli 53638]
 gi|191166417|ref|ZP_03028248.1| transcriptional regulatory protein CpxR [Escherichia coli B7A]
 gi|193063906|ref|ZP_03044992.1| transcriptional regulatory protein CpxR [Escherichia coli E22]
 gi|193068055|ref|ZP_03049020.1| transcriptional regulatory protein CpxR [Escherichia coli E110019]
 gi|194427424|ref|ZP_03059973.1| transcriptional regulatory protein CpxR [Escherichia coli B171]
 gi|194433236|ref|ZP_03065517.1| transcriptional regulatory protein CpxR [Shigella dysenteriae 1012]
 gi|194438327|ref|ZP_03070418.1| transcriptional regulatory protein CpxR [Escherichia coli 101-1]
 gi|195937554|ref|ZP_03082936.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807964|ref|ZP_03250301.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4206]
 gi|208814318|ref|ZP_03255647.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4045]
 gi|208820163|ref|ZP_03260483.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4042]
 gi|209397017|ref|YP_002273430.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4115]
 gi|209921392|ref|YP_002295476.1| DNA-binding transcriptional regulator CpxR [Escherichia coli SE11]
 gi|217324624|ref|ZP_03440708.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. TW14588]
 gi|218556475|ref|YP_002389389.1| DNA-binding transcriptional regulator CpxR [Escherichia coli IAI1]
 gi|218697627|ref|YP_002405294.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 55989]
 gi|218701384|ref|YP_002409013.1| DNA-binding transcriptional regulator CpxR [Escherichia coli IAI39]
 gi|218707537|ref|YP_002415056.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           UMN026]
 gi|238902979|ref|YP_002928775.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli BW2952]
 gi|253775448|ref|YP_003038279.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039129|ref|ZP_04873179.1| transcriptional regulatory protein CpxR [Escherichia sp. 1_1_43]
 gi|254163863|ref|YP_003046971.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B str.
           REL606]
 gi|254795912|ref|YP_003080749.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021558|ref|ZP_05435423.1| DNA-binding transcriptional regulator CpxR [Shigella sp. D9]
 gi|256026049|ref|ZP_05439914.1| DNA-binding transcriptional regulator CpxR [Escherichia sp.
           4_1_40B]
 gi|260846667|ref|YP_003224445.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O103:H2 str. 12009]
 gi|260857686|ref|YP_003231577.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O26:H11 str. 11368]
 gi|260870632|ref|YP_003237034.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O111:H- str. 11128]
 gi|261223545|ref|ZP_05937826.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257307|ref|ZP_05949840.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O157:H7 str. FRIK966]
 gi|291285325|ref|YP_003502143.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O55:H7 str. CB9615]
 gi|293407532|ref|ZP_06651451.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1412]
 gi|293413352|ref|ZP_06656013.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B354]
 gi|293417376|ref|ZP_06660000.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B185]
 gi|293470226|ref|ZP_06664637.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B088]
 gi|297519848|ref|ZP_06938234.1| DNA-binding transcriptional regulator CpxR [Escherichia coli OP50]
 gi|298383280|ref|ZP_06992873.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1302]
 gi|300819884|ref|ZP_07100068.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300823743|ref|ZP_07103869.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300896397|ref|ZP_07114930.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300906239|ref|ZP_07123949.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300919108|ref|ZP_07135647.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300922910|ref|ZP_07138986.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300931647|ref|ZP_07146956.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300938408|ref|ZP_07153153.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300947233|ref|ZP_07161440.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954639|ref|ZP_07167082.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301022754|ref|ZP_07186599.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301023973|ref|ZP_07187696.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301303390|ref|ZP_07209514.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301328243|ref|ZP_07221365.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301645100|ref|ZP_07245060.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307140611|ref|ZP_07499967.1| DNA-binding transcriptional regulator CpxR [Escherichia coli H736]
 gi|307313960|ref|ZP_07593574.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309783839|ref|ZP_07678484.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 1617]
 gi|309796625|ref|ZP_07691031.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312971799|ref|ZP_07785973.1| transcriptional regulatory protein cpxR [Escherichia coli 1827-70]
 gi|331644650|ref|ZP_08345769.1| transcriptional regulatory protein CpxR [Escherichia coli H736]
 gi|331655608|ref|ZP_08356600.1| transcriptional regulatory protein CpxR [Escherichia coli M718]
 gi|331665566|ref|ZP_08366464.1| transcriptional regulatory protein CpxR [Escherichia coli TA143]
 gi|331670765|ref|ZP_08371601.1| transcriptional regulatory protein CpxR [Escherichia coli TA271]
 gi|331675368|ref|ZP_08376118.1| transcriptional regulatory protein CpxR [Escherichia coli TA280]
 gi|331680029|ref|ZP_08380691.1| transcriptional regulatory protein CpxR [Escherichia coli H591]
 gi|332282797|ref|ZP_08395210.1| transcriptional regulatory protein CpxR [Shigella sp. D9]
 gi|83287786|sp|P0AE89|CPXR_ECO57 RecName: Full=Transcriptional regulatory protein CpxR
 gi|83287787|sp|P0AE88|CPXR_ECOLI RecName: Full=Transcriptional regulatory protein CpxR
 gi|83287788|sp|P0AE90|CPXR_SHIFL RecName: Full=Transcriptional regulatory protein CpxR
 gi|12518811|gb|AAG59106.1|AE005622_8 transcriptional regulator in 2-component system [Escherichia coli
           O157:H7 str. EDL933]
 gi|410157|gb|AAC36868.1| transcription factor [Escherichia coli]
 gi|2367329|gb|AAC76894.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. MG1655]
 gi|13364314|dbj|BAB38261.1| transcriptional regulator in 2-component system CpxR [Escherichia
           coli O157:H7 str. Sakai]
 gi|24054492|gb|AAN45425.1| transcriptional regulator in 2-component system [Shigella flexneri
           2a str. 301]
 gi|30043053|gb|AAP18775.1| transcriptional regulator in 2-component system [Shigella flexneri
           2a str. 2457T]
 gi|41386674|dbj|BAD08346.1| regulator of two component system [Shigella sonnei]
 gi|73857890|gb|AAZ90597.1| transcriptional regulator in 2-component system [Shigella sonnei
           Ss046]
 gi|81243068|gb|ABB63778.1| transcriptional regulator in 2-component system [Shigella
           dysenteriae Sd197]
 gi|81247673|gb|ABB68381.1| transcriptional regulator in 2-component system [Shigella boydii
           Sb227]
 gi|85676147|dbj|BAE77397.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K12 substr. W3110]
 gi|157069066|gb|ABV08321.1| transcriptional regulatory protein CpxR [Escherichia coli HS]
 gi|157080181|gb|ABV19889.1| transcriptional regulatory protein CpxR [Escherichia coli E24377A]
 gi|169757004|gb|ACA79703.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169891218|gb|ACB04925.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521057|gb|ACB19235.1| transcriptional regulatory protein CpxR [Escherichia coli SMS-3-5]
 gi|187428398|gb|ACD07672.1| transcriptional regulatory protein CpxR [Shigella boydii CDC
           3083-94]
 gi|187769203|gb|EDU33047.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4196]
 gi|188016800|gb|EDU54922.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4113]
 gi|188487787|gb|EDU62890.1| transcriptional regulatory protein CpxR [Escherichia coli 53638]
 gi|189001521|gb|EDU70507.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4076]
 gi|189357188|gb|EDU75607.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4401]
 gi|189362610|gb|EDU81029.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4486]
 gi|189367865|gb|EDU86281.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373281|gb|EDU91697.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC869]
 gi|189378053|gb|EDU96469.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC508]
 gi|190903517|gb|EDV63235.1| transcriptional regulatory protein CpxR [Escherichia coli B7A]
 gi|192929371|gb|EDV82979.1| transcriptional regulatory protein CpxR [Escherichia coli E22]
 gi|192958675|gb|EDV89113.1| transcriptional regulatory protein CpxR [Escherichia coli E110019]
 gi|194414464|gb|EDX30737.1| transcriptional regulatory protein CpxR [Escherichia coli B171]
 gi|194418520|gb|EDX34608.1| transcriptional regulatory protein CpxR [Shigella dysenteriae 1012]
 gi|194422764|gb|EDX38760.1| transcriptional regulatory protein CpxR [Escherichia coli 101-1]
 gi|208727765|gb|EDZ77366.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735595|gb|EDZ84282.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4045]
 gi|208740286|gb|EDZ87968.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4042]
 gi|209158417|gb|ACI35850.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4115]
 gi|209752428|gb|ACI74521.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752430|gb|ACI74522.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752432|gb|ACI74523.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752434|gb|ACI74524.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752436|gb|ACI74525.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209914651|dbj|BAG79725.1| two-component response regulator [Escherichia coli SE11]
 gi|217320845|gb|EEC29269.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. TW14588]
 gi|218354359|emb|CAV01104.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli 55989]
 gi|218363244|emb|CAR00889.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli IAI1]
 gi|218371370|emb|CAR19202.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli IAI39]
 gi|218434634|emb|CAR15567.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli UMN026]
 gi|226838565|gb|EEH70594.1| transcriptional regulatory protein CpxR [Escherichia sp. 1_1_43]
 gi|238860859|gb|ACR62857.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli BW2952]
 gi|242379449|emb|CAQ34264.1| CpxR transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253326492|gb|ACT31094.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975764|gb|ACT41435.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli B str. REL606]
 gi|253979921|gb|ACT45591.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli BL21(DE3)]
 gi|254595312|gb|ACT74673.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O157:H7 str. TW14359]
 gi|257756335|dbj|BAI27837.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O26:H11 str. 11368]
 gi|257761814|dbj|BAI33311.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O103:H2 str. 12009]
 gi|257766988|dbj|BAI38483.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O111:H- str. 11128]
 gi|260451250|gb|ACX41672.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|281603309|gb|ADA76293.1| Transcriptional regulatory protein cpxR [Shigella flexneri 2002017]
 gi|284924013|emb|CBG37112.1| two-component response regulator [Escherichia coli 042]
 gi|290765198|gb|ADD59159.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O55:H7 str. CB9615]
 gi|291321436|gb|EFE60875.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B088]
 gi|291425449|gb|EFE98488.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1412]
 gi|291430896|gb|EFF03892.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B185]
 gi|291468100|gb|EFF10598.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B354]
 gi|298276314|gb|EFI17834.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1302]
 gi|299880600|gb|EFI88811.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300318401|gb|EFJ68185.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300359714|gb|EFJ75584.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300397379|gb|EFJ80917.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300401965|gb|EFJ85503.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300413784|gb|EFJ97094.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300420770|gb|EFK04081.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300453157|gb|EFK16777.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300456609|gb|EFK20102.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300460547|gb|EFK24040.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300523805|gb|EFK44874.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300527524|gb|EFK48586.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300841344|gb|EFK69104.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300845306|gb|EFK73066.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301076620|gb|EFK91426.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306906277|gb|EFN36793.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308119781|gb|EFO57043.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|308928210|gb|EFP73672.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 1617]
 gi|309704338|emb|CBJ03687.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334176|gb|EFQ00381.1| transcriptional regulatory protein cpxR [Escherichia coli 1827-70]
 gi|313647189|gb|EFS11642.1| transcriptional regulatory protein cpxR [Shigella flexneri 2a str.
           2457T]
 gi|315063204|gb|ADT77531.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli W]
 gi|315138479|dbj|BAJ45638.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli DH1]
 gi|315254285|gb|EFU34253.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315617708|gb|EFU98313.1| transcriptional regulatory protein cpxR [Escherichia coli 3431]
 gi|320184955|gb|EFW59739.1| Copper-sensing two-component system response regulator CpxR
           [Shigella flexneri CDC 796-83]
 gi|320639162|gb|EFX08793.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. G5101]
 gi|320644551|gb|EFX13608.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H- str. 493-89]
 gi|320649874|gb|EFX18386.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H- str. H 2687]
 gi|320655275|gb|EFX23221.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660902|gb|EFX28348.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665967|gb|EFX32990.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323161185|gb|EFZ47102.1| transcriptional regulatory protein cpxR [Escherichia coli E128010]
 gi|323167338|gb|EFZ53046.1| transcriptional regulatory protein cpxR [Shigella sonnei 53G]
 gi|323174349|gb|EFZ59975.1| transcriptional regulatory protein cpxR [Escherichia coli LT-68]
 gi|323177933|gb|EFZ63517.1| transcriptional regulatory protein cpxR [Escherichia coli 1180]
 gi|323380731|gb|ADX52999.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934403|gb|EGB30816.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323938995|gb|EGB35213.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323943749|gb|EGB39847.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323959318|gb|EGB54979.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323964265|gb|EGB59748.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323969665|gb|EGB64949.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974321|gb|EGB69450.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324020500|gb|EGB89719.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324115685|gb|EGC09621.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|327250549|gb|EGE62257.1| transcriptional regulatory protein cpxR [Escherichia coli STEC_7v]
 gi|331036112|gb|EGI08348.1| transcriptional regulatory protein CpxR [Escherichia coli H736]
 gi|331046709|gb|EGI18794.1| transcriptional regulatory protein CpxR [Escherichia coli M718]
 gi|331057251|gb|EGI29241.1| transcriptional regulatory protein CpxR [Escherichia coli TA143]
 gi|331062020|gb|EGI33943.1| transcriptional regulatory protein CpxR [Escherichia coli TA271]
 gi|331067428|gb|EGI38833.1| transcriptional regulatory protein CpxR [Escherichia coli TA280]
 gi|331072355|gb|EGI43688.1| transcriptional regulatory protein CpxR [Escherichia coli H591]
 gi|332085156|gb|EGI90334.1| transcriptional regulatory protein cpxR [Shigella dysenteriae
           155-74]
 gi|332088270|gb|EGI93390.1| transcriptional regulatory protein cpxR [Shigella boydii 3594-74]
 gi|332105149|gb|EGJ08495.1| transcriptional regulatory protein CpxR [Shigella sp. D9]
 gi|332751599|gb|EGJ81998.1| transcriptional regulatory protein cpxR [Shigella flexneri 4343-70]
 gi|332752622|gb|EGJ83008.1| transcriptional regulatory protein cpxR [Shigella flexneri 2747-71]
 gi|332764548|gb|EGJ94780.1| response regulator [Shigella flexneri 2930-71]
 gi|332998014|gb|EGK17620.1| transcriptional regulatory protein cpxR [Shigella flexneri VA-6]
 gi|332998636|gb|EGK18233.1| transcriptional regulatory protein cpxR [Shigella flexneri K-218]
 gi|333013845|gb|EGK33207.1| transcriptional regulatory protein cpxR [Shigella flexneri K-304]
 gi|739996|prf||2004283A membrane sensor regulator
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|307822388|ref|ZP_07652620.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylobacter tundripaludum SV96]
 gi|307736954|gb|EFO07799.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylobacter tundripaludum SV96]
          Length = 352

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD +    ++   L  + G+ V  A +   A +    +  P+ +++D  M  +   E
Sbjct: 13  ILIVDDTLANLQLLSTLLKEEGYKVRPANNGAMALQAVATKK-PDLILLDIKMPEMSGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   ++ V ++    D    I     GA  ++ KPF  E ++  +    Q++
Sbjct: 72  VCTALKDNPETKNIPVLFISALNDVTDKIQAFNVGALDYINKPFQFEEVKARVATHLQLK 131

Query: 122 KSKDENQ 128
             +D+ +
Sbjct: 132 AYEDDME 138


>gi|303257132|ref|ZP_07343146.1| DNA-binding response regulator VicR [Burkholderiales bacterium
           1_1_47]
 gi|302860623|gb|EFL83700.1| DNA-binding response regulator VicR [Burkholderiales bacterium
           1_1_47]
          Length = 235

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62
           +L+VD    +R++        GF V  A+   +A E   K    P+ +++D  M  +   
Sbjct: 6   ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMPEIDGM 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + ++++   +DV V  L  + +   +I G R GA+ F+ KPF  E L   +R + +  K
Sbjct: 66  -SMLKRLRKSSDVPVIILSAKDERPMVIEGFREGADDFVSKPFYIEELMERIRAVLRRGK 124

Query: 123 SKD 125
           ++ 
Sbjct: 125 TRS 127


>gi|291568300|dbj|BAI90572.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 377

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L++D       V     ++  + +  A S  E      K + P+ +++D  M    
Sbjct: 1   MLSILVIDDEPDNFDVIETFLSNQDYQLHYAASGQEGISAL-KLIQPDLILLDVMMPAID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    ++ MPL     +  +      E +     AGA+ F+ KP N   LR  +  + 
Sbjct: 60  GIEVCRRIKAMPLWQSTPIIMVTALSSKESLAKCIAAGADDFIGKPVNALELRSRVHSML 119

Query: 119 QMQKSKDENQFLD 131
           ++++  D+   L 
Sbjct: 120 RIKQQYDQISHLS 132


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D +  +  +         F V        A +  E E   + +++D  M    
Sbjct: 1   MYKVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIE-ENEFDIILLDVMMPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    VR     ++V +  +    +  + I G   GA+ +++KPF+   +   +  + 
Sbjct: 60  GFDVCRQVR---TFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL+D    + ++     ++ GF V       +A E   ++   + +V+D  +    
Sbjct: 1   MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVE-LTEQAAYSLIVLDVMLPVRS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             + +  +RQ    +   V  L  + D    + G   GA+ +L KP +   L   +R + 
Sbjct: 60  GFDVLKILRQH---SQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAIL 116

Query: 119 QMQKSKDENQ 128
           +     + NQ
Sbjct: 117 RRASIAEANQ 126


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  R      G+ V  AT   +   F       + +V+D  +  V   
Sbjct: 2   RVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDG-HFLGSSENYDAVVLDLGLPEVDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G ++ V  L     +   +AG  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  TVLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRR 118


>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
 gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
          Length = 1829

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1708 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1767

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M++  +
Sbjct: 1768 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1827


>gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGV 59
           M  +L+ D +  +  +        GF    A    EA +   + E     +++D  M  +
Sbjct: 1   MKKMLIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEI 60

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+  +   V +  +    +    I G   GA+ +++KPF+   +   +R +
Sbjct: 61  DGFEVCRRLRKESM---VPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAV 117

Query: 118 PQMQKSKD 125
            +   +++
Sbjct: 118 LRRLGAQE 125


>gi|317494749|ref|ZP_07953161.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917351|gb|EFV38698.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLQELLDLEGFSVVVAHDGEQALELLDSSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  VRQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKEVRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SNWNEQQQ 125


>gi|323343418|ref|ZP_08083645.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269]
 gi|323095237|gb|EFZ37811.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269]
          Length = 1348

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+V+ ++ +  + R++  D  + +  A +  EA E   +E  P+ ++ D  M  +  
Sbjct: 1090 KRILVVEDNNEMVVLLRNILQDH-YTIDAAANGIEALE-WIRESGPDLVISDVMMPRMDG 1147

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F     +++  +   + V  L  +   +  I G + GA+ +L KPFN E L   +  +  
Sbjct: 1148 FALCGAIKKDVMLCHIPVILLTAKTLDKDKIKGYKEGADMYLNKPFNPELLLSMIGNVFH 1207

Query: 120  M 120
             
Sbjct: 1208 R 1208


>gi|288924702|ref|ZP_06418639.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Prevotella
            buccae D17]
 gi|288338489|gb|EFC76838.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one-component system) [Prevotella
            buccae D17]
          Length = 1321

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R     +     + V  A +  E  E   +E +P++++ D SM  +   
Sbjct: 1036 TILVVEDNSDLRTFLYSILGR-DYNVIMAENGKEGLEMAIRE-MPDFILTDVSMPVMDGL 1093

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++Q    + + +  L      +    G R G + ++ KPF+   L+  +  +   
Sbjct: 1094 TMVHHIKQNKDISHLPIIILSARASMKDQEQGLREGVHGYITKPFSAAYLKGRIENILAH 1153

Query: 121  QKSKDENQFLDAI 133
            QK   + + L+ I
Sbjct: 1154 QKMY-QQKALEQI 1165


>gi|239503588|ref|ZP_04662898.1| response regulator [Acinetobacter baumannii AB900]
          Length = 319

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
 gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
          Length = 1347

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL D +  +R+    L     + V       EA      E   + ++ D  M      
Sbjct: 646 RILLADDNADLREHVARLLCPS-WEVVAVPDGVEALRRAM-ETPFDLVLTDVMMPRLDGF 703

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P    V +  L       + +AG   GA+ +L KPF+ + L   +R   ++
Sbjct: 704 GLVTALRADPRTRHVPIVLLSARAGSAEAVAGLAVGADDYLTKPFSSQELIARVRANVEL 763

Query: 121 QKSKDE-NQFLDAI 133
            + + +  + L A+
Sbjct: 764 GQLRGQIIRRLRAL 777


>gi|256424519|ref|YP_003125172.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039427|gb|ACU62971.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1306

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            LLL++ S   R   +       F + +A +         +  +PN +V D +M  +    
Sbjct: 1061 LLLIEDSEDFRFYLKDNLGVH-FHIIDAANGKLGWAIL-QHTVPNLIVSDVNMPEMDGLE 1118

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +RQ      + V  L      E  +     GA  ++ KPFN E L   +R +   Q
Sbjct: 1119 LCRRIRQNQRLAHLPVILLTARASEEDQLEALDNGATDYITKPFNYEVLLSRIRNIVSQQ 1178

Query: 122  KSKDE--NQFLDA 132
             S  +   Q +DA
Sbjct: 1179 VSLKKTFQQHIDA 1191


>gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
 gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
          Length = 231

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L+++    V  + +    + G+    A          +       ++ D  +    
Sbjct: 1   MYSILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHS-FQLVISDIILPKLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+      + V  L      +  + G  AGA+ +++KPF+   L   ++ L 
Sbjct: 60  GFELCKEIRK--ANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLL 117

Query: 119 QMQ 121
           + +
Sbjct: 118 KRK 120


>gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
 gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
          Length = 222

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 2/132 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +    +   +  GF V  A+    A +  + E   + +V+D S+  +   
Sbjct: 2   RILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESY-SLVVLDVSLPRLSGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G ++ V  L    D    + G  AGA+ +L KPF+   L   +R L +  +
Sbjct: 61  EVLAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRSQ 120

Query: 123 SK-DENQFLDAI 133
            + +E Q   ++
Sbjct: 121 GQVNEPQRFGSL 132


>gi|170695738|ref|ZP_02886880.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139343|gb|EDT07529.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   +  + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121


>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
 gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++ +      GFMV        A     +E  P+ +++D  +  +  
Sbjct: 3   KQILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEEN-PDLIILDLMLPEISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    +    + G   GA+ ++ KPF  + L   ++   +
Sbjct: 62  WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSE 121


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    V    +    +  + V  A    E  +    E   + +V+D  +     L
Sbjct: 2   RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLAL-EKPFDLIVLDWMLPKKDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+        +  L  +   E ++AG  +G++ +L KPF    L   +R L + 
Sbjct: 61  SVLKELRERKNL--TPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118

Query: 121 QKS 123
            + 
Sbjct: 119 SEL 121


>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 219

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +RK+ +      G++V EA    E  E     +  + +++D  M  + 
Sbjct: 1   MKKILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIY-DIVILDIMMPKID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L    D    + G     + +++KPFN + L   ++ L 
Sbjct: 60  GWSVCRKIREE---SQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|225872700|ref|YP_002754157.1| response regulator [Acidobacterium capsulatum ATCC 51196]
 gi|225794094|gb|ACO34184.1| response regulator [Acidobacterium capsulatum ATCC 51196]
          Length = 370

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V   +     ++   A +  EA E  E++   + ++ D  M G+   
Sbjct: 5   RILVVDDEPYIRAVIATMLEKSNYLPVLAANGQEALEHLEQDAPYDVVLSDIMMNGMDGI 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   +  D  +  +    D    I+  R GA  +LLKPF +E L   +      ++
Sbjct: 65  GLLEKLREVHPDTPMIMVTAMHDVSIAISAMRKGAYDYLLKPFAKEQLLATVGRALDYRR 124

Query: 123 SKDEN----QFLDAI 133
              +N    Q L+ +
Sbjct: 125 LVQQNSMYRQNLEEL 139


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    ++++ R      G+ V +  S  EA     ++  P+ +++D  +  +   
Sbjct: 6   TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQ-RPDLVILDIMLPDLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         +  L  +     +I G   GA+ +L KPFN + L   +R L + 
Sbjct: 65  TVCQRVRE-FASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRR 121


>gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++ + I+R+       D G++V  A    E      ++   + +++D  +  +  F
Sbjct: 2   RLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGY-DLIILDIMLPHMNGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R   LG D  V  L    + E  + G R+GA+ +L+KPF+ + L   +  L + +
Sbjct: 61  ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRR 119


>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 221

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +V+D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGN-FDLIVLDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      V +  L    + E  + G     + ++ KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---VPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|91774040|ref|YP_566732.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713055|gb|ABE52982.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 492

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD   +  ++     +   + +  A    E  E    E + + +++D  M     
Sbjct: 7   TKILVVDDEPLNVELMEIYLSP-DYEIISAYGGVEGLEKVATENV-DLILLDIMMPDVSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P    + +  +      +  I    AGA+ FL KP +R  L   +R L +
Sbjct: 65  FEVCESLKADPRYQLIPIIMVTALSGKDDKIRSIEAGADDFLSKPVDRLELATRVRSLLR 124

Query: 120 MQKSKDEN 127
           +++  D  
Sbjct: 125 IRQLNDRL 132


>gi|300726552|ref|ZP_07059996.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
 gi|299776166|gb|EFI72732.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Prevotella bryantii B14]
          Length = 1330

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+++ +  +R+      +D  F V++A    E       +L+P  ++ D  M  +   
Sbjct: 1073 TILVIEDNAGIRQYIADSLSDR-FTVYQAADGREGLAKAL-DLIPTIVISDIMMPAMDGN 1130

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +    G  AGA+S++ KPF+R  L   +  L   
Sbjct: 1131 ELCKALKTDMRTSHIPVILLTAKDSNQAKEEGYEAGADSYITKPFSRSLLVTRIDNLIAQ 1190

Query: 121  QK 122
            +K
Sbjct: 1191 RK 1192


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Kim 5]
          Length = 218

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 7/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G       +  EA     +    + +++D  M  +   
Sbjct: 4   RILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGN-IDLIILDIGMPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + + + +L    +    I G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119

Query: 121 QKS-KDENQFLDAI 133
             +    ++   A+
Sbjct: 120 SGNGAAPDRRHAAL 133


>gi|254485790|ref|ZP_05098995.1| response regulator [Roseobacter sp. GAI101]
 gi|214042659|gb|EEB83297.1| response regulator [Roseobacter sp. GAI101]
          Length = 408

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD S + R++       +GF V EA S  EA E C +  LP+ ++ D  M G+ 
Sbjct: 1   MQLVLVVDDSKLQRRILSASLTRWGFEVVEAASGDEALEQC-RIRLPDLVISDWVMPGMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---R 115
              F    R +      +   L  + +  ++  G   GA+ FL KP +   LR  +    
Sbjct: 60  GLQFCRAFRDLSNFQYGYFILLTSKSEKAEVAKGLDNGADDFLSKPVDVHELRARITAGE 119

Query: 116 ELPQMQKSKDENQFL 130
            +  MQ+   E   +
Sbjct: 120 RILDMQRELTEKNRI 134


>gi|75910898|ref|YP_325194.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75704623|gb|ABA24299.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 381

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L++D       V   L ++  + +    S  EA         P+ +++D  M G+   
Sbjct: 5   SILVIDDLPDNFDVIETLLSEQDYTLHYVASGQEAIASLNL-FQPDLILLDVMMPGMDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ MP    V +  +      E +    ++GA+ F+ KP N   LR  +  + ++
Sbjct: 64  EVCQRIKAMPQWQSVPIIMVTALTAKEDLARCLKSGADDFISKPINALELRARLHSMLRI 123

Query: 121 QKSKDENQFLDAI 133
           ++  D+ Q L  I
Sbjct: 124 KQQYDKIQTLSNI 136


>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    E E+     +ID  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIE-EVKVEMAIIDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1831

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1710 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1769

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1770 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1829


>gi|288925550|ref|ZP_06419483.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine
           kinase/response regulator, hybrid (one-component system)
           [Prevotella buccae D17]
 gi|288337766|gb|EFC76119.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine
           kinase/response regulator, hybrid (one-component system)
           [Prevotella buccae D17]
          Length = 865

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+V+ +   R+  +    +  + VFEA +  EA E    +   + +V D  M  +   
Sbjct: 619 TLLIVEDNDDFRRFIKESLQEE-YTVFEAGNGQEALE-LTAQESIDMIVSDVMMPVMDGL 676

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                ++     + + V  L      E +I+G + GA+ ++ KPFN E L+  +R+L 
Sbjct: 677 QLCHRIKTDINFSHIPVILLTARTADEHVISGLKEGADEYITKPFNMEILKIKIRKLF 734


>gi|261250889|ref|ZP_05943463.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis
           CIP 102891]
 gi|260937762|gb|EEX93750.1| pole remodelling regulatory diguanylate cyclase [Vibrio orientalis
           CIP 102891]
          Length = 376

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD +   R +   L   + F V  A +  +A        LP+ +++D  M  +   
Sbjct: 7   SVLVVDDNAENRVLLSGLLKPY-FKVLVAVNGEQALTIASA-KLPDIILLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P+   + V +L  +   E    G   GA  ++LKP +   L   +    ++
Sbjct: 65  EVCLRLKSNPITESIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLTRINTHLKL 124

Query: 121 QKSKDE----NQFLDA 132
           + + DE    N+ L+ 
Sbjct: 125 RGAMDELSHQNEVLEE 140


>gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 236

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +       + G+ VF+A +  +  E  + E   +  ++D  M  +    
Sbjct: 6   VLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNET-IHLAIVDIMMPVMDGIT 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             ++      D  V  L  + +    + G   GA+ ++ KPF    L   +    +    
Sbjct: 65  MTMKLRENF-DFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRRYS- 122

Query: 124 KDENQFLDAI 133
               ++L A+
Sbjct: 123 ----RYLKAV 128


>gi|15614110|ref|NP_242413.1| hypothetical protein BH1547 [Bacillus halodurans C-125]
 gi|10174164|dbj|BAB05266.1| BH1547 [Bacillus halodurans C-125]
          Length = 661

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   +  KV   +  +  + V    S  EA    + +   + +V D  M  +   
Sbjct: 331 RILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVLDTKEW-DLVVADVMMPKMSGY 389

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   ++RQ    T++ +  +      E +  G RAGAN +L KP N   LR  ++ L + 
Sbjct: 390 ELTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELRARIKALTEA 449

Query: 121 QKSKDENQFLD 131
           ++S  +   ++
Sbjct: 450 KQSIRDQLRME 460


>gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti]
 gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
 gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     GF V       EA E   +E LP+ L++D  + G   +
Sbjct: 4   KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERLPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 121 QKSK 124
            K +
Sbjct: 123 AKPE 126


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTQQTI 127


>gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+     R+V ++     GF V  A +  EA      E  P+ +V+D  +     +E
Sbjct: 8   VLVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAM-LLVAEEQPDLIVLDWMLPNVSGIE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
               V+  P    + +  L    +    + G   GA+ +++KP++   L  
Sbjct: 67  ICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMA 117


>gi|300694206|ref|YP_003750179.1| transcriptional regulatory protein ompr [Ralstonia solanacearum
           PSI07]
 gi|299076243|emb|CBJ35557.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
           PSI07]
          Length = 245

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLSQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         DV V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122

Query: 122 KS 123
           ++
Sbjct: 123 QA 124


>gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R        + G  VF A    EA E   KE + + +++D  M       
Sbjct: 6   VLVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKV-HLIILDIMMPRQDGIS 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +      ++ +  L  + +    + G + GA+ ++ KPFN   L   ++   + 
Sbjct: 65  TTFKIREQ-KNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRR 120


>gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 222

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M   L+VD    +R+V +      G +  EA+   EA E  +     + +V+D  M  + 
Sbjct: 1   MVRFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDY-DVVVLDIMMPNLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  R++    DV +  L    +    + G   G + ++ KPF+ + L   ++ + + 
Sbjct: 60  GFTAC-REIKKIKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSER 118

Query: 121 QK 122
            K
Sbjct: 119 AK 120


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPY-DLVLLDLGLPKRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKD 125
           Q  + 
Sbjct: 119 QSGRS 123


>gi|167761675|ref|ZP_02433802.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC
           43183]
 gi|167763397|ref|ZP_02435524.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC
           43183]
 gi|167698691|gb|EDS15270.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC
           43183]
 gi|167700456|gb|EDS17035.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC
           43183]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  +A +        + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEDALKM--DISTYDLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      + + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKEKKTAKIPIIFITAKDTENDTVTGFNIGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  +  + I
Sbjct: 123 TRQTETERAPEQI 135


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    +  +        G+ V  A    E  E        +++++D  +  + 
Sbjct: 1   MKKVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAY-DFIILDLMLPSMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +RQ  +  D  +  L  + D  + I G   GA+ ++ KPF+   +   M+ + 
Sbjct: 60  GMDICKKLRQEKI--DAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIM 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           ++VD    + ++      + G+ V +A +  EA     K   P+ +++D  M  +    F
Sbjct: 1   MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKS-QPDLIILDIMMPEMDGLSF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              VR+    + V +  +  +V+    I G   GA+ ++ KPFN   L   ++ L + 
Sbjct: 60  CTQVRKS---SQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRR 114


>gi|99078349|ref|YP_611607.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035487|gb|ABF62345.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 238

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D  H +R++      + G+ V EA +  +A      +  P+ +V+D +M G   
Sbjct: 8   KRILVCDDEHHLREMLSEYLCERGYEVMEAEN-ADAMLAVFNDDTPDVVVLDINMPGTDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R + + + + V  L    +    I G   GA+ +L KP +   L   ++   + Q
Sbjct: 67  LT-ALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125


>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD    VR+          + V  A    EA      +L P+ +++D  M  +   
Sbjct: 9   TLLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAV-ADLRPDLILLDVMMPALDGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G    +  L      +  I G  AGA+ ++LKP++   L   +R L + 
Sbjct: 68  AVCRALR--SAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRR 125

Query: 121 QK 122
            +
Sbjct: 126 TR 127


>gi|198274494|ref|ZP_03207026.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135]
 gi|198272696|gb|EDY96965.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135]
          Length = 1398

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+V+ +  +R   R +  ++ + V EA+   EA        + ++++ D  M  +    
Sbjct: 1149 ILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALALLHANNV-DFIISDLMMPVMDGME 1206

Query: 64   --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V+     + +    L  +   E  +   + GA++FLLKPF+   L   +  + + +
Sbjct: 1207 LSRRVKNDFSISHIPFLMLTAKTSDEARLESYKMGADAFLLKPFDENMLLARISNILENR 1266

Query: 122  KSKDE 126
            K   +
Sbjct: 1267 KRFQQ 1271


>gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus
           terrae PB90-1]
 gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus
           terrae PB90-1]
          Length = 301

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++D       V   +    GF V  A S   A E     L P+ +++D  M G+  
Sbjct: 3   KTVLIIDDVPANVGVLLDVLAAAGFEVAVAESGQSALEQL-AWLKPDIILLDVLMPGLDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      DV V ++    +    + G  AGA  +L KP + E +   +    +
Sbjct: 62  FETCRRLKAREATADVPVLFMTALTEVVDKVKGFAAGAVDYLAKPLHPEEVLARVNAHLK 121

Query: 120 MQKSKDENQFLD 131
           +++ +   +   
Sbjct: 122 IREQQQLLEQRA 133


>gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 265

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LL++    +R++        GF V  A    +  +    +  P+ +++D  +     L 
Sbjct: 5   ILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKG-QALALQYTPDLILLDLMLPKVDGLT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+      + +  L      +  ++G  +GA+ +L KPF+ E L+  ++ L + 
Sbjct: 64  LCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALLRR 122


>gi|319640170|ref|ZP_07994896.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_40A]
 gi|317388157|gb|EFV69010.1| two-component system sensor histidine kinase/response regulator
            hybrid [Bacteroides sp. 3_1_40A]
          Length = 1357

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  +R     LF    + V+EA +  E  +      +P+ ++ D  M     
Sbjct: 1105 TSLLVIEDNEEIRHYVCSLFCK-DYAVYEAANGEEGGDVAMS-KIPDLIISDIMMPVKDG 1162

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R+ P    + +  L  + +   ++  ++ G + +++KPFN E L+  +R L  
Sbjct: 1163 FTCCRELREQPRTAHIPILMLTAKAEDADVLQASKIGVDDYMMKPFNPEVLKAKVRNLIL 1222

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1223 QRERLKR 1229


>gi|294777755|ref|ZP_06743202.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448399|gb|EFG16952.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1444

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +  + +    D  F ++ A    E  +       P+ +V D+ M  +   
Sbjct: 1189 TVLIVEDNKDLCNMLKLQLEDK-FNIYMANDGVEGLKKVHL-YHPDMVVTDQMMPNMDGI 1246

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  +R+    + + V  L  + + E        GAN++++KPF+++ L   + +L   
Sbjct: 1247 EMLQRIRKDFQISHIPVIILTAKGNDEAKTKAISMGANAYIIKPFSKDYLVARIEQLLNE 1306

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1307 RKLFRE 1312


>gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
          Length = 221

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Haliangium ochraceum DSM 14365]
 gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with
           PAS/PAC sensor [Haliangium ochraceum DSM 14365]
          Length = 1131

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R +  + G+ V +      A     K   P+ L++D  M  +  F
Sbjct: 799 RVLVVDDDDAIRAICREVLENAGYAVRDVPDGYAALTE-TKRYRPDLLLLDIMMPEMDGF 857

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  +   + +L  +      +   R+GA  ++ KPF+   L   + +  + 
Sbjct: 858 QTAERLKSDPSTSMTPIIFLSAKGATADKVRAFRSGAEDYVTKPFDAAELVARVSKTVER 917

Query: 121 QKSK 124
              +
Sbjct: 918 HSRE 921



 Score = 53.7 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 35/116 (30%), Gaps = 3/116 (2%)

Query: 16  VGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEFIAHVRQMPLGTD 74
             + +    GF V  A    EA     +E      +  D      L  +   R  P    
Sbjct: 688 ALKGILLMAGFQVLIAEDADEALALTREEQPSLAVIYTDTPDRDGLALVEIFRHDPDTRK 747

Query: 75  VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
             V  +      +   A +RA AN FL  P        A   L Q     + ++ L
Sbjct: 748 TAVLVIS--GTEDLRDAASRANANEFLHTPLAPGAFVEACTRLIQETGRVNAHRVL 801



 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 45/144 (31%), Gaps = 17/144 (11%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +V     + +  R   +   + +  A +   AR   E     + +++ E  +    
Sbjct: 6   KIVAIV-DEPALAEEVRGELSRQ-YDLDIAITTEGARARLEANPDIDVVLLPEFSDEGPA 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR----AGANSFLLKPFNRETLRFAMREL 117
                    L  DV +  +  + +   +         AGA      P+    L  A+   
Sbjct: 64  VARAANLGELRPDVPILVVSADPESSDLNTAIHGQQIAGAVQV---PWRSGELSMAVERT 120

Query: 118 PQMQKSKDE--------NQFLDAI 133
            +  + + E         + LDA+
Sbjct: 121 AEFGRLRRELDSMRDRMQRRLDAL 144


>gi|167031289|ref|YP_001666520.1| osmolarity response regulator [Pseudomonas putida GB-1]
 gi|166857777|gb|ABY96184.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313496610|gb|ADR57976.1| OmpR [Pseudomonas putida BIRD-1]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +   +  + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLQREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q
Sbjct: 71  SACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D    +  + +    D  + +    +  EA +  EK+   + +++D  M     
Sbjct: 19  RRILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQP-FDVVILDVMMPYVDG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     +DV +  L      E ++ G   GA+ ++ KPF    L   +  + +
Sbjct: 78  FEACERIRAQ---SDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILR 134

Query: 120 MQKSKDENQ 128
             +     +
Sbjct: 135 RVEGYSARR 143


>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 230

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+ D    +R + +    + G+ V EA    EA +        +  ++D  M  + 
Sbjct: 2   MDKILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKIL-AGGDISLCLLDVMMPEMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +++M    ++ V  +         I G   GA+ +++KPFN       +R   + 
Sbjct: 61  GF-HVLKEMRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRR 119


>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 234

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF+A +  E  +  ++E   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDREN-IHLVLLDIMMPGMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R++    ++ +  L         I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMC-RKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120


>gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +R V R    D G+ V EA    +A +    + + +  ++D  M  +  +
Sbjct: 4   TILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPV-DVCLLDIMMPEMDGY 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   +DV V  +  +    + I G   GA+ +++KPFN       +    +  K
Sbjct: 63  -QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLK 121

Query: 123 SKDENQ 128
                Q
Sbjct: 122 GMAAAQ 127


>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1964

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           L   +   V  A +        +     + +++D  M G+  
Sbjct: 1845 KKVLIVDDDVRNIFALTSLLERYQMQVIPAENGAAGIACLQNSTDIDLVLMDVMMPGMDG 1904

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R++     + +  L  +           AGA+ ++ KP + E L   +R   
Sbjct: 1905 YETMKAIRKLQQFQSLPIIALTAKAMKGDRDKCLDAGASDYITKPVDTEQLLSILRVWL 1963



 Score = 70.2 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
            +L+VD      ++   +    GF    A     A    +K   P  + +D  + G     
Sbjct: 1578 ILIVDDDLNFARLVLEIARGQGFKGLIALRSSTALAMLQK-YQPCAVTLDICLPGDSGWT 1636

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118
             +  ++  P    +    + +         G + GA S+  KP  RE L      +++  
Sbjct: 1637 ILDRIKHDPKTVHIPGIIMSVNN---DRQRGQKLGAYSYYQKPLTRENLVKIMAGLKQFI 1693

Query: 119  QM 120
            + 
Sbjct: 1694 ER 1695


>gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D +  +R++ R L    GF V EA +  +A          + +++D  M    
Sbjct: 1   MRNILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT--DLIILDIMMPIKS 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +      +   + +L  +           AG++ FL KPF+   L   ++ L + 
Sbjct: 59  GFKACIEIREKTSA-PILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRR 117


>gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G     A +  EA     +    + +++D  M  +   
Sbjct: 4   RILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGN-IDLIILDIGMPEMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + + + +L    +    I G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKR 119

Query: 121 QKSKDENQFLDA 132
             +  E     A
Sbjct: 120 SSNGAEPDRRHA 131


>gi|150003705|ref|YP_001298449.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149932129|gb|ABR38827.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1328

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 1080 LIVDDNEEMLNFLSSSLTDK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 1138 CKAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197

Query: 123  SKDE 126
               +
Sbjct: 1198 LLRQ 1201


>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 247

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 18  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 77  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 134


>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    + ++ R      GF V  +T   E  E    E   + +++D  + G  
Sbjct: 1   MGKVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDY-DLVLLDLMLPGLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      ++ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GYEICRRIRA---TKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHI 116

Query: 119 QM 120
             
Sbjct: 117 NR 118


>gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 319

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDHAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+ D +  + K+ +       F V  A    EA    +    P  +++D  M     
Sbjct: 3   RNILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFD-HYNPQLVLLDIMMPLIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+    ++  +  +  + +    I G  +GA+ +++KPF+   +   ++ + +
Sbjct: 62  IEVCNRIREK---SNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|241113448|ref|YP_002973283.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240861656|gb|ACS59322.1| GAF sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 2099

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLVD           +    G  V  AT+  EA +    E     +++D  M G+  +
Sbjct: 1980 TVLLVDDDARNIFALSSVLERRGMKVLTATTGSEAIDVINNEPSVAIVLMDIMMPGMDGY 2039

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R  P    + +  L  +           AGA+ +L KP N E L  A+R     
Sbjct: 2040 ETMQVIRSEPRFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRMWLHR 2099



 Score = 91.8 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    +A     ++  P  + +D  +  +L   
Sbjct: 1713 LLVVEDDAHYARVLVDLARDNGFKVLVAMRGSDALALA-QDYRPAAISLDIFLPDMLGWT 1771

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             ++ ++Q P    + V  +      E    G   GA +F+ KP   E L      ++   
Sbjct: 1772 VLSQLKQNPQTRHIPVQIIS---LDEDRQHGLTRGAFAFMSKPTTPEGLGKALSRLKAYA 1828

Query: 119  QMQKSK------DENQFLD 131
            Q ++        +E + L 
Sbjct: 1829 QPRRKHLLLVEDNEAERLS 1847



 Score = 77.9 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LLLV+ +   R     L       +    S  EA +   +    + +V+D S+  +  
Sbjct: 1833 KHLLLVEDNEAERLSVTALLGHDDIDITSVGSGSEALDALRQNAA-DCVVLDLSLPDMSG 1891

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R      +V V          +  A   + A S ++K   + E L  
Sbjct: 1892 FDVLEQIRDDAEIREVPVVVFTGRELSAEEDAALHSMARSVVVKGVESPERLLD 1945


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIETEKK 127


>gi|161520008|ref|YP_001583435.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353810|ref|YP_001949437.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160344058|gb|ABX17143.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189337832|dbj|BAG46901.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E       +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGRE-MRSVLDDGAPDLIVLDLMLPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
 gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+  R      G+ V EA +  EA +    E  P+ L++D  +  +   
Sbjct: 7   RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEH-PDILILDLGLPDIDGV 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              VR++   ++V +  L +    +  +    AGA+ +L KPF  + L   +R   + + 
Sbjct: 66  -EVVRRIREWSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRT 124

Query: 123 SKDENQFLD 131
              ++   +
Sbjct: 125 PDQQDTVFE 133


>gi|320333135|ref|YP_004169846.1| response regulator receiver and SARP domain-containing protein
           [Deinococcus maricopensis DSM 21211]
 gi|319754424|gb|ADV66181.1| response regulator receiver and SARP domain protein [Deinococcus
           maricopensis DSM 21211]
          Length = 343

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 4/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + K+   +    G  V       EA +     + P+ ++ D  M  + 
Sbjct: 1   MPRVLVVDDDAAILKLVSVILTRAGHEVRTCAHPNEALDLLNV-MTPDLVISDVVMPYMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+ HVR  P   D+    L    + + +  G   GA+ +L KPF    L  A+    
Sbjct: 60  GYEFLEHVRAQPNMADLPFMLLSSHAERDDVRRGMNLGADDYLPKPFTPHDLTSAVDARL 119

Query: 119 QMQKSKDENQF-LDA 132
           +    K + Q  L+A
Sbjct: 120 RRAGQKVQAQSGLEA 134


>gi|295836199|ref|ZP_06823132.1| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
 gi|295825901|gb|EDY42237.2| sensor histidine kinase/response regulator [Streptomyces sp. SPB74]
          Length = 1963

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +  + G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1843 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1902

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+MP    + +  L  +           +GA+ ++ KP + + L  A+ +  ++
Sbjct: 1903 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRV 1962

Query: 121  Q 121
            +
Sbjct: 1963 K 1963


>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        GF  +EA    +A    E E+     +ID  M  +  F
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIE-EVRVEMAIIDIMMPNMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D+ +  L  + +  + + G   G + +L+KPF+   L   ++ L + 
Sbjct: 63  DLCYELRK---YYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|209522751|ref|ZP_03271309.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209496800|gb|EDZ97097.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 379

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L++D       V     ++  + +  A S  E      K + P+ +++D  M    
Sbjct: 1   MLSILVIDDEPDNFDVIETFLSNQDYQLHYAASGQEGISAL-KLIQPDLILLDVMMPAID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    ++ MPL     +  +      E +     AGA+ F+ KP N   LR  +  + 
Sbjct: 60  GIEVCRRIKAMPLWQSTPIIMVTALSSKESLAKCIAAGADDFIGKPVNALELRSRVHSML 119

Query: 119 QMQKSKDENQFLD 131
           ++++  D+   L 
Sbjct: 120 RIKQQYDQISHLS 132


>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
 gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
 gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Corby]
 gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 226

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D    +  +        GF V          +    + + + +++D  +  +  F
Sbjct: 4   SILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQ-VFDAIILDVMLPKLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +    +  V  L    D    I G   GA+ +L KP N   L   +R + +  +
Sbjct: 63  -EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D    + ++ +   +D  +    A    EA E       P  +++D  M G   +
Sbjct: 5   KILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMN-QPQLVILDIMMPGLDGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     ++V +  L  +      I G   GA+ +++KPF+   +   ++   + 
Sbjct: 64  EVCRRIRAE---SNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRR 120


>gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H + ++      + G+    A +  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  V+++   +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 60  G-IDVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQKQ 122


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +         D  ++V  A    +  +   +    + +++D  +  +   
Sbjct: 2   RILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWD-FIQSFSYDLIILDVMLPKLSGT 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V  L         + G  AGA+ +++KPF+   L   +R L +   
Sbjct: 61  ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120


>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
 gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +R + R    D G+ VF A    E       E  P+ +++D  +  +  
Sbjct: 3   KKILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKF-HEKNPDLVLLDLMLPKMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+        +  L    D +  + G  A A+ ++ KPF+   +   +  + +
Sbjct: 62  FTVCEILRKESR---TPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RIE 121


>gi|108763819|ref|YP_629338.1| sigma-54 dependent DNA-binding response regulator Nla19 [Myxococcus
           xanthus DK 1622]
 gi|34329413|gb|AAQ63909.1| mutant NtrC-like activator [Myxococcus xanthus]
 gi|108467699|gb|ABF92884.1| sigma-54 dependent DNA-binding response regulator Nla19 [Myxococcus
           xanthus DK 1622]
          Length = 482

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R     L     + VFEA +  EA          + L+ D  ME +   
Sbjct: 12  RLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQL-ASGSIDLLLTDLKMEPMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R + +   + V  +      E  +   R GA  ++ KPF    LR+ +    +  +
Sbjct: 71  TLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERAR 130

Query: 123 SKD 125
            + 
Sbjct: 131 LQR 133


>gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CNPAF512]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     GF V       EA E   +E  P+ L++D  + G   +
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERTPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 ARPE 126


>gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 418

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD +     +        GF    A S  EA    EK+  P+ +++D  M  +   
Sbjct: 35  SILIVDDNQNNCDLLNRRLERKGFRCAIALSGREALRQVEKQP-PDLILLDVMMPEMDGM 93

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     ++ V  +  +   E +I+    GAN ++ KP +   +   +R   Q 
Sbjct: 94  EVLDILRRNFNSVELPVLMVTAKNAHEDIISAFAQGANDYIEKPVDFPIMLARIRHHLQH 153

Query: 121 QKSKDENQF 129
           ++  DE + 
Sbjct: 154 KRLDDELKR 162


>gi|83955851|ref|ZP_00964393.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83839856|gb|EAP79033.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 239

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK         G     A +  E  +    E   + +V+D  M G    
Sbjct: 6   RILVVDDHSEIRKSVTSYLERNGMRASAAGNAVE-MDARLAEAHFDLIVLDVMMPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R    G  + +  L    D E  IAG   GA+ +L KPFN + L   +  + +  +
Sbjct: 65  SACRRLRKEG-HIPILMLTALGDDEDRIAGLDGGADDYLAKPFNPKELVARINAILRRTQ 123

Query: 123 S 123
            
Sbjct: 124 L 124


>gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ +      GF+V EA    +A +  ++      +++D  M  +  F
Sbjct: 5   KILVVDDEARMRKLVKDFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPKLDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +  +   + V V  L    +    + G + G + ++ KPF+ + L   +  + +   
Sbjct: 65  -ETLEVLRQYSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTI 123

Query: 123 SKDENQFLD 131
            + E + + 
Sbjct: 124 GESEEKLVA 132


>gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 236

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + +  +      G+ V  AT   +A +   KE   N +++D  +  +  
Sbjct: 5   QRILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKF-KEERFNLIILDVMIPEIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F          T+V + +L  +   E  I G + GA+ +L+KPFN E L   +  L +  
Sbjct: 64  FQVAETIRLENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG 123

Query: 122 KSKDENQFLDA 132
              D+ + L++
Sbjct: 124 MKGDDLKELNS 134


>gi|325272398|ref|ZP_08138793.1| osmolarity response regulator [Pseudomonas sp. TJI-51]
 gi|324102475|gb|EGB99926.1| osmolarity response regulator [Pseudomonas sp. TJI-51]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLSREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q
Sbjct: 71  SACKRLRQHNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129


>gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 226

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +       F   G+ V    +  EA +        + +V+D  +  + 
Sbjct: 1   MTKVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLVSSS--IDLMVLDLGLPDMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G    +  L    +   M+ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 59  GLDVARAARTEGQSCPILILTARAEEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 118

Query: 121 QKSKDE 126
             S DE
Sbjct: 119 SVSSDE 124


>gi|256828201|ref|YP_003156929.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfomicrobium baculatum DSM 4028]
 gi|256577377|gb|ACU88513.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfomicrobium baculatum DSM 4028]
          Length = 487

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 8/138 (5%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M +   +L+VD    +R++        G  V  A++  +A      +   + ++ D  M 
Sbjct: 1   MTTAFHVLVVDDEPALREICEEALTGAGHAVTLASNGQDALGKLGAQG-FDLVISDLRMP 59

Query: 58  GVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +     ++ +R+  L  DV    +      E  +   + GA  ++ KPF+ + L   +R
Sbjct: 60  DMNGQDLLSQIRKRQL--DVDFLVMTGYGTTETAVDIMKNGAADYIAKPFDIKHLLLRVR 117

Query: 116 ELPQMQKSKDENQFLDAI 133
            + + ++S+ E + L A+
Sbjct: 118 SILEQRRSRKEQEKLSAV 135


>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
          Length = 222

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    ++++        G + F A    +A    +   + + +++D  M  + 
Sbjct: 1   MANILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPM-DLMILDIMMPNLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F      R+M   +++ +  L  +   +  + G   GA+ ++ KPF+ + L      L 
Sbjct: 60  GFSVCKIAREM---SNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALL 116

Query: 119 QMQKS 123
           +    
Sbjct: 117 RRSSL 121


>gi|206564292|ref|YP_002235055.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040332|emb|CAR56317.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   + +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALD-DGAPDLIVLDLMLPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 235

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ + +  +R     +    G+    A +  +A     ++  P+++++D  M  + 
Sbjct: 1   MK-ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQ-QPDFIILDIMMPELD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        + +L  + +    + G   GA+ ++ KPF    +R  ++ + 
Sbjct: 59  GYKVCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIV 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    + +  +      G+ +  AT   +       +   + +++D  +    
Sbjct: 1   MKEILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKY-DLIILDLMLPNLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R   +     +  L  + D    + G   GA+ ++ KPF  E L   +R++ 
Sbjct: 60  GIEICRRLRANKIT--TPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKIL 117

Query: 119 QMQKSKDENQFLDAI 133
             Q    E +  +A+
Sbjct: 118 SRQVVISETKEREAV 132


>gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
 gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
          Length = 1406

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD                G  V  A +  E     E     + +++D  M  +  
Sbjct: 1275 KRVLIVDDDIRNVFALASALEAHGLEVLYADNGREGIAKLEANEDIDLVLMDIMMPELDG 1334

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP   D+ +  L  +           AGA+ ++ KP + + L   MR    
Sbjct: 1335 DATTRMIREMPQFADLPIISLTAKAMRGDRENSLAAGASDYVSKPVDLDHLLNVMRRWLD 1394

Query: 120  MQKS 123
              KS
Sbjct: 1395 RGKS 1398


>gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
 gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
          Length = 1183

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD +  +R+    L     + V  AT   EA      E+  + ++ D  M      
Sbjct: 586 RILVVDDNPDLREHVARLLGPT-WDVVTATDGVEAL-RVATEVAFDLVLTDVMMPRLDGF 643

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R  P    V +  L       + +AG   GA+ +L KPF+ + L   +R   ++
Sbjct: 644 GLVAALRADPRTRYVPIVLLSARAGSAEEVAGLSVGADDYLTKPFSGQELIARVRANVEL 703

Query: 121 QKSKDE-NQFLDAI 133
            + + +  + L A+
Sbjct: 704 GQLRGQIIRRLRAL 717


>gi|304391595|ref|ZP_07373537.1| response regulator PleD [Ahrensia sp. R2A130]
 gi|303295824|gb|EFL90182.1| response regulator PleD [Ahrensia sp. R2A130]
          Length = 457

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      ++         F V  A++  +A   C+     + +++D  M G+   
Sbjct: 4   RILVVDDVEANVRLLEARLLAEYFEVVTASNGPDAIAICQAGRC-DVILLDVMMPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + +  +         + G  AGA+ FL KP +   +   ++ L ++
Sbjct: 63  EVCTRLKADPKTAHIPIIMVTALDQASDRVQGLDAGADDFLTKPVDDLAMTTRVKSLARL 122

Query: 121 QKSKDENQFLDA 132
           + S DE +   A
Sbjct: 123 KHSMDELKLRAA 134



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +L+VD      +   +        V   T   E       +     ++ +       L 
Sbjct: 157 KILIVDDRASSYERSVNALTTE-HSVAVVTDPQEGLFRAADDDFDAIIISLGIENFDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     V +  +  + D   +I     G N ++ +P +   LR  +R   + +
Sbjct: 216 LCSQLRSLDRTRLVPILLVAQKEDQAVLIRAIDLGVNDYITRPLDVNELRARVRSQVRRK 275

Query: 122 KSKDENQ 128
           +  D+ +
Sbjct: 276 RLNDQLR 282


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K         G+ V          +   +    + +++D  +  + 
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNY-DVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  +         ++G   GA+ +L+KPF  E L   +R L + 
Sbjct: 60  GLEVARRLRES-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118

Query: 121 QKSKDE 126
              + E
Sbjct: 119 IAIETE 124


>gi|269839221|ref|YP_003323913.1| response regulator receiver protein [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790951|gb|ACZ43091.1| response regulator receiver protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 139

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD   + R++     +  G+ V EA+   EA E      LP  +++D+SM     L
Sbjct: 6   RVLVVDDDRVTRRIVSVKLSGLGYTVDEASDGQEALEMIASGELPTLVIVDQSMPRLTGL 65

Query: 61  EFIAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           E +  +R  Q      + +  L      E ++ G  AG + +++KPF+   L   +R + 
Sbjct: 66  ELVRAIRSHQDERVAALPIIMLTSHQSEEAIVRGLEAGVDDYVIKPFSPNELAARVRTVL 125

Query: 119 -QMQKSKDENQFLD 131
            + Q++    + L 
Sbjct: 126 WRCQRAAGRREPLA 139


>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + +F+  +  +A +   KE L +  ++D  +  V  F
Sbjct: 4   NILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKL-DLAILDVMLPDVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 119


>gi|218437977|ref|YP_002376306.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218170705|gb|ACK69438.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 353

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD      ++      + G+ V    S  +A    E +  P+ +++D  M      E
Sbjct: 12  ILIVDDIPENLEILFKTLQEQGYEVRRVLSGQQALMVVEADP-PDLILLDVKMPHIDGYE 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE--LPQ 119
              H++       + V +L    +    +   R G   ++ KPF+ E +   +    L Q
Sbjct: 71  VCRHLKAQEKTAQIPVIFLSALHEVFDKVKAFRVGGVDYITKPFHLEEVLSRIETQLLIQ 130

Query: 120 MQKSKDENQFLD 131
            QK   + + L 
Sbjct: 131 RQKVLLQTEILQ 142


>gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     GF V       EA E   +E  P+ L++D  + G   +
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEA-EIRLQERTPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 ARPE 126


>gi|56414448|ref|YP_151523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363369|ref|YP_002143006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128705|gb|AAV78211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094846|emb|CAR60379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 213

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 16  VGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGT 73
           +   +    GF   EA     A      E  P+ +++D  + G     FI H+++  +  
Sbjct: 1   MVCFVLEQNGFQPVEAEDYDSAVNKL-NEPWPDLILLDWMLPGGSGLQFIKHLKREAMTR 59

Query: 74  DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131
           D+ V  L    + E  + G   GA+ ++ KPF+ + L   ++ + +        + ++
Sbjct: 60  DIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 117


>gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 235

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            SLLL+D    + ++ +   +  G+ +  A+         +     + +++D  +  V  
Sbjct: 4   KSLLLIDDDQALTELLQEYLSAQGYTIHVASDGEAGLLAAKSGQHYDLIILDVMLPKVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++++       V  L  + D    I G   GA+ +L KPFN   L   ++ + +  
Sbjct: 64  F-EVLKRLRSTHVTPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRV 122

Query: 122 KSKDENQ 128
             +   Q
Sbjct: 123 DIQAGLQ 129


>gi|124265864|ref|YP_001019868.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124258639|gb|ABM93633.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 333

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  ATS   A E       P+ +++D  M G+  F 
Sbjct: 30  VLIVDDVPDNVSVLHDALDESGYTVLVATSGEAALERA-AHARPDVVLLDALMPGMDGFE 88

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + + ++    + E + A   AG   ++ KP     +   +    +  
Sbjct: 89  VARRLKRDAATAHIPIVFMTGLAETEHVEAAFEAGGVDYVTKPIRPREVIARIAAHVRGA 148

Query: 122 KSKDENQ-FLDA 132
           +   + +  LDA
Sbjct: 149 RQARQARSALDA 160


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+      +   ++    GF V  A +  +A    ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGA-DIVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    + V +  +  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCRQLRQ---TSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVL 116

Query: 119 QMQKSKDENQ 128
           +   ++D+ +
Sbjct: 117 RRGVAEDDVE 126


>gi|296159566|ref|ZP_06842390.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890274|gb|EFG70068.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   +  + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K         G+ V          +        + +++D  +  + 
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNY-DVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  +         I+G   GA+ +L+KPF  E L   +R L + 
Sbjct: 60  GLEVARRLRES-KKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRR 118

Query: 121 QKSKDE 126
              + E
Sbjct: 119 IAIETE 124


>gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 884

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           SLL++D +  +R     L     + V +A    E      ++ +P+ ++ D  M  +   
Sbjct: 640 SLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRD-VPDLIICDVMMPVMDGL 697

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   V+   + + + V  L      E+ + G   GA+++L KPF+ E L+  +R L   
Sbjct: 698 EFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSGEVLKSRVRNLLDN 757

Query: 121 QKSKD 125
           +K   
Sbjct: 758 RKLMK 762


>gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
 gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQ-MDPLLTRETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   ++ + + Q
Sbjct: 65  SICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123


>gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
 gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
          Length = 232

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKTQILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQ-TASHNPDIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   T+  +  +    +    I    AGA+ +L KPF+ + L   +R   
Sbjct: 60  IDGV-EVIKKIRTWTNTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVTV 118

Query: 119 QMQKSKDEN 127
           +       +
Sbjct: 119 RRLSLMQTD 127


>gi|218256920|ref|ZP_03474405.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM
            18315]
 gi|218225884|gb|EEC98534.1| hypothetical protein PRABACTJOHN_00057 [Parabacteroides johnsonii DSM
            18315]
          Length = 1312

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+VD +  +  + +   +   ++V EA +  EA    E++  P+ ++ D  M  +  F 
Sbjct: 1064 ILVVDDNRDIVWLIKETLSFE-YVVREAFNAEEALALMEQQT-PDLIITDIMMPSMDGFA 1121

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I+ ++       + +  +  +V   +   G   GA+++L KPF+   L   +  L   +
Sbjct: 1122 LISRIKSDKFTRHIPLIVVSAKVSENEQAEGLDLGADAYLTKPFSSVVLHSVVNRLMANK 1181

Query: 122  KSKD 125
            K   
Sbjct: 1182 KELK 1185


>gi|114798852|ref|YP_760979.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
 gi|114739026|gb|ABI77151.1| response regulator PleD [Hyphomonas neptunium ATCC 15444]
          Length = 455

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD     R++ +         V  A +  +A E  ++E  P  +++D  M G+   
Sbjct: 4   RILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVAQREN-PEIILLDVMMPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + V  +    + E  + G  AGA  FL KP +   L   +  L + 
Sbjct: 63  EVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPVDDFLLNSRITALMRY 122

Query: 121 QKSKDENQFLDA 132
                E +  +A
Sbjct: 123 NTVASELRQREA 134



 Score = 47.5 bits (113), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 12/116 (10%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFE---ATS-VCEAREFCEKELLPNYLVIDE--SM 56
            + +VD          +     G        A      A E        + L++      
Sbjct: 155 RIFIVDDDARSSGRLANTLRAQGHKATTLMEAGDMGELATERV------DVLILSLFARS 208

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
              L+ IAH +  P+   + V  +    D  K + G   GA+  +  P +R+ L  
Sbjct: 209 FDPLKLIAHFKMNPVTRSISVILICDPHDKAKALRGLEIGASDMITIPIDRQELAA 264


>gi|167645462|ref|YP_001683125.1| response regulator PleD [Caulobacter sp. K31]
 gi|167347892|gb|ABZ70627.1| response regulator receiver modulated diguanylate cyclase
           [Caulobacter sp. K31]
          Length = 454

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++     +   + V  A     A      E LP+ +++D  M G+  F
Sbjct: 4   RILVVDDIEANVRLLEAKLSAEYYQVSVAYDGPTALAMAADE-LPDVILLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + V  +         IAG  AGA+ FL KP +   L   +R L + 
Sbjct: 63  TVCRKLKEDPTTRHIPVVLVTALDGRADRIAGLEAGASDFLTKPIDDVMLFARVRSLTRF 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KLVIDELRQREA 134



 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +    +                +   +A          + ++I+ + +G    
Sbjct: 155 RVLVVDDNERQAQRVAAELAVE-HRPVVESDPVKA--QISAGGPVDLVIINAAAKGFDGL 211

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +R       + +  ++   D  +++     G N  L +P + + L   ++   Q 
Sbjct: 212 RFAASLRSDERTRHLPILAMVDTDDRPRLVKALEIGINDILPRPIDPQELSARVKTQIQR 271

Query: 121 QKSKD 125
           ++  D
Sbjct: 272 KRYTD 276


>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVLEF 62
           +L+V+    +    +       + V  A     A E  E+ +   + +++D  +  +   
Sbjct: 5   VLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   +  +  + +L         +AG  AGA+ ++ KPF  E L   +R + + 
Sbjct: 65  TVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122


>gi|83594261|ref|YP_428013.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577175|gb|ABC23726.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 250

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  + R      G  V  A     A +     L P+ L++D  M  +  + 
Sbjct: 23  ILVVEDEPDIADILRAYLERAGMRVVSARDGRRALD-LHASLNPDLLLLDVQMPVMDGW- 80

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + ++    D  V  L         + G R GA+ +++KPFN   +   +R + + 
Sbjct: 81  RVLSELRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRR 137


>gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 241

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+   ++     +     GF V  AT+  E      K L P+ +++D  + G     
Sbjct: 8   ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARK-LRPDLILLDIMLPGESGIR 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R      DV +  +  +   E  + G  AGA+ ++ KPF  + L   +    +   +
Sbjct: 67  VCQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSDA 126

Query: 124 KDENQFLDA 132
               + L+A
Sbjct: 127 GHRGRVLEA 135


>gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
 gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  R      G  V       +A   C  + +P+ +V+D  +  +   
Sbjct: 4   RVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTC-ADAMPDLVVLDLGLPDLDGV 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +RQ+   + V V  L    + +  +     GA+ ++ KPF  E L   +R   +   
Sbjct: 63  -DVLRQLRQSSSVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRRGG 121

Query: 123 SK 124
           ++
Sbjct: 122 AE 123


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
            DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
            DG6]
          Length = 1010

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLV+ + +         +  G+ V  A +  EA +  E+   P  +++D  M  +  
Sbjct: 892  RRILLVEDNTVNILTISDYLHSRGYTVAVANNGQEALDSIEQA-QPELILMDIQMPVMDG 950

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R MP  +++ +  L              AGAN++L KP +   L   + E+ 
Sbjct: 951  IEATRRLRAMPAYSEIPIIALTALAMPGDRERCLAAGANAYLTKPISLRHLVQMIEEMV 1009


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|257440628|ref|ZP_05616383.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
 gi|257196951|gb|EEU95235.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
          Length = 236

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    VR +        G+    A++   A         P+ +++D  +  +   
Sbjct: 5   TILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPDIDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  +R +   +++ +  L    +    I     GA+ +L KPF+ + L   +R   +   
Sbjct: 63  IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLN 122

Query: 123 SKDEN 127
               +
Sbjct: 123 LLASD 127


>gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
 gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF V +A    E  E+ E     + L+ID  M G+ 
Sbjct: 1   MQTILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDA-DLLIIDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-NSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
           15579]
 gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
           15579]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   KE   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERR 127


>gi|18450333|ref|NP_569204.1| hypothetical protein pli0051 [Listeria innocua Clip11262]
 gi|16415834|emb|CAC42049.1| pli0051 [Listeria innocua Clip11262]
          Length = 240

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M+    +L+V+    +RK+         +  + A +   A         P+ +++D  + 
Sbjct: 1   MNKNASILVVEDDKAIRKLITTTLETRNYNFYTADTGNAALIQV-TSRQPDIIILDLGLP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +      ++++   + V +  +    +    I     GA+ FL KPF+ E L   +R  
Sbjct: 60  DMDGTT-IIQRVREWSQVPIIVVSARSEDSDKIVALDMGADDFLTKPFSVEELLARIRVS 118

Query: 118 PQMQ 121
            + +
Sbjct: 119 LRRR 122


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|260172966|ref|ZP_05759378.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
 gi|315921245|ref|ZP_07917485.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695120|gb|EFS31955.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1355

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R+    L +   ++V+EA++  E  +    E +P+ +V D  M  +   
Sbjct: 1107 RVLVVEDDDDMRQYIVSLLSQQ-YIVYEASNGKEGLKEAV-EQIPDLIVSDVMMPVMDGL 1164

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++  +   + V  L  +   E +  G    A+ ++LKPF  + L   +  L + 
Sbjct: 1165 ELCKAIKEEMITAHIPVVLLTAKALNEHIEEGYSVMADDYVLKPFAPKVLLAKLDSLIKN 1224

Query: 121  QKSKDEN--QFLDAI 133
            +        + LDAI
Sbjct: 1225 RNRLRRIFCEKLDAI 1239


>gi|257095132|ref|YP_003168773.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047656|gb|ACV36844.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 120

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S   R V + L +  G+ V  A S  E     + E LP+ +++D  M G+  
Sbjct: 4   KRILVVDDSPTERHVMKTLLSSNGYEVITAESGEEGIAKAKSE-LPDLILMDVVMPGLNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 + +     ++ V     +      I G R GA  +L+KP N + L   +  L
Sbjct: 63  YQATRTLTRDEATRNIPVIVCTTKGQETDKIWGLRQGAQDYLVKPVNGQELLAKIAAL 120


>gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 220

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +        G  V       +A    E +  P+ +++D  + G+   
Sbjct: 2   KILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVE-DFKPDVVILDIMLPGLSGK 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D+ +  L    D +  +   + GA+ +++KPF+ E L   ++ + + ++
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRKE 120

Query: 123 SKDE 126
            K+E
Sbjct: 121 KKEE 124


>gi|26989126|ref|NP_744551.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148548500|ref|YP_001268602.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24983960|gb|AAN68015.1|AE016434_6 DNA-binding response regulator OmpR [Pseudomonas putida KT2440]
 gi|148512558|gb|ABQ79418.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 246

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +  V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 231

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+ D    + +         GF V +A    EA E  +   + N ++ID  M G+ 
Sbjct: 1   MQSILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSV-NLMIIDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-TSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRR 118


>gi|302340470|ref|YP_003805676.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301637655|gb|ADK83082.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 365

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD  +   ++   +     F    AT    A     +E   + +++D  M  +  F
Sbjct: 9   RILIVDDVYRNIQLAGAILKQENFHFSFATDGNTAL-RVAREGGVDLILLDIMMPDLDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++ P   D+ V +L  + D E ++ G   GA  +L KPF    L   +R    +
Sbjct: 68  SVCSLLKENPETADIPVIFLTAKNDTESIVRGFDLGAVDYLTKPFQAAELLARVRTHVHL 127

Query: 121 QKSKDENQFLDA 132
           + ++ + +  +A
Sbjct: 128 RITERKLKEANA 139


>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+V +      G  V EA    +A E   KE   + +V+D  M  + 
Sbjct: 1   MFRILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKV-KENDFDVIVMDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F ++ +++    D+ V  L    +    + G   G + ++ KPF+ + L   +  +   
Sbjct: 60  GFSSY-KEIKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNR 118

Query: 121 QKSKDENQFL 130
                 N  L
Sbjct: 119 NNKTTNNDNL 128


>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
 gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
          Length = 233

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         G+ V +A    EA +  + E + + L+ID  M  + 
Sbjct: 3   MSKILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKV-DLLIIDVMMPRLD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 62  GIRATLKIREQN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 120


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+    V K+   +  D  ++V  A +     +        + +++D  +  +   
Sbjct: 2   RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLV-SSFNYDLIILDVLLPELDGI 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R       + V ++    D  + IAG  AGA+ ++ KPF  E L   +R L + 
Sbjct: 61  KFCQQLRAQEYT--LPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR 118



 Score = 97.2 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L VD    + +  +       + +       E  +  + E  P+ L++D SM     
Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDEN-PDLLLLDISMPQFTG 597

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR+ P    + + +     +     A  +AG ++ + K  +   L   +    +
Sbjct: 598 IELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMK 657

Query: 120 MQKSKD 125
               + 
Sbjct: 658 RSYLQQ 663


>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|165932901|ref|YP_001649690.1| response regulator PleD [Rickettsia rickettsii str. Iowa]
 gi|165907988|gb|ABY72284.1| GGDEF family protein [Rickettsia rickettsii str. Iowa]
          Length = 450

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIEPNIKLLTAKLLKEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GFEVCKTIKTDPETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 60.6 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQTKNIKQMLLKLTQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|221069658|ref|ZP_03545763.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714681|gb|EED70049.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-----LPNYLVIDESMEG 58
           LL+++    + ++      + G  V          E  +        LP+ +++D  +  
Sbjct: 12  LLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLPD 71

Query: 59  VLEF--IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           +        +R MP     V V  L  + D    I G   GA+ +L KPF    L   +R
Sbjct: 72  MDGLEVCRRIRSMPGAPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARIR 131

Query: 116 ELPQMQKSKDENQFLDAI 133
            + + +  + +    +A+
Sbjct: 132 AILRRKGGESQAAPANAV 149


>gi|59713364|ref|YP_206139.1| transcriptional regulator SyrB [Vibrio fischeri ES114]
 gi|59481612|gb|AAW87251.1| probable transcriptional regulator SyrB [Vibrio fischeri ES114]
          Length = 221

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + + +  D G+ V        A EF +     + +++D  +  + 
Sbjct: 1   MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHS-IDLVLLDVMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R         +  L    D   M+ G +AGA+ F+ KPFN   L   +  + + 
Sbjct: 60  GYQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRR 118

Query: 121 QKSKDENQ 128
              + + Q
Sbjct: 119 VGLERQRQ 126


>gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata
           HTCC2501]
 gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata
           HTCC2501]
          Length = 229

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +LL++  + +         + G+ V       +  E   ++   + +++D  + G+  
Sbjct: 3   NRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEML-QDGDFDLVILDIVLPGMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R    G D+ +  L      E ++ G  +GA+ +L+KPF  + L   +R L +
Sbjct: 62  REVARTIRGQ--GLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALSR 119

Query: 120 MQKSKDE-NQFLDA 132
            + S    N+ L A
Sbjct: 120 RRSSGPRGNRTLSA 133


>gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733]
 gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733]
          Length = 218

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ +  + K+        G+ V+   +  EA +  E++   + +++D  +  + 
Sbjct: 1   MK-ILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQE-FDLVLLDIMLPEID 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   V       D+ V +L  +      ++G R+GA  ++ KPF+ E L   +  + + 
Sbjct: 59  GY--EVFAYMWEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116

Query: 121 QKSKDENQFLD 131
               D N+ L 
Sbjct: 117 NGKNDSNKLLK 127


>gi|77919754|ref|YP_357569.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545837|gb|ABA89399.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Pelobacter carbinolicus DSM 2380]
          Length = 451

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R +     ++V EA +  EA    EKE + + ++ D  M  +  
Sbjct: 6   KKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKE-MFDVVLCDVCMPTLDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  +R   +     V  +    + +  +   + GA  ++ KPF  + +   +R+  +
Sbjct: 65  PGFLKELRARNVSPT--VIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKAEE 122

Query: 120 MQKSKDENQFL 130
             + ++EN  L
Sbjct: 123 RLRLREENGLL 133


>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
 gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           +LLLV+    + +  +      GF V   T+  +A E   +E  P  +V+D  + G   +
Sbjct: 4   TLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARRE-QPALVVLDWMLPGKSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ        +  +  + +    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 63  EVCKELRQSSACG---IIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRR 119


>gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 222

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ++ G+MV  A     A    ++   P+ +++D  M G+  F 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQR-RRPDLILLDAMMPGMDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P  +++ V ++    D E ++ G  AGA  +++KP     +   +    +  
Sbjct: 72  TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131

Query: 122 KSKDENQ 128
           ++    +
Sbjct: 132 RTLQSAR 138


>gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    + +  R   +  G+ V  A+S   A      E  P+ +V+D  +    
Sbjct: 1   MTRVLVIDDEPQILRALRINLSVRGYEVITASSGAGAL-RAAAEHKPDVVVLDLGLPDIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +A +R         V  L    D    +    AGA+ ++ KPF  +     +R   
Sbjct: 60  GIDVLAGLR---GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAV 116

Query: 119 QMQKSKDENQF 129
           +   +  E + 
Sbjct: 117 RRNTAASELEQ 127


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 18  MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 77  GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 135


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + +      N  G+ V +     +  +   KE   + +++D  +  +
Sbjct: 1   MKGKILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMA-KENDYDLILLDIMLPSM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +R++   +D+ V  L  + +    + G   GA+ ++ KPF  E L   +R   +
Sbjct: 60  NG-IEILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALK 118

Query: 120 MQ 121
            +
Sbjct: 119 RK 120


>gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++    F D G+ V  A++  E    C ++   + +++D  + G  + +
Sbjct: 11  VLVVDDDPRIRQMLTRYFEDEGYAVSTASNGLE-MRACLQQENFDAILLDWVLPGGKDGL 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R++   +DV +  L    D    I G   GA+ ++ KPF+   +   ++ + + ++
Sbjct: 70  DLAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQ 128


>gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R++ +    + G  V EAT   +A      E + + +++D  M  + 
Sbjct: 1   MTKLLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKV-DMVIMDIMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     TD+ +  L  + +  + + G   G + +L+KPF    L   ++ + 
Sbjct: 60  GWALCEEIR--SYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSIL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+++    + +         G+ V +A       E  E     + +++D  +  +  
Sbjct: 7   QSILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETG-RFDLILLDVMLPKLNG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   + V +  L         ++G  +GAN ++ KPF  E L   +R   +  
Sbjct: 66  -TEVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNT 124

Query: 122 KSKDENQFLDA 132
                 + L A
Sbjct: 125 APLSSTEVLSA 135


>gi|89076062|ref|ZP_01162422.1| osmolarity response regulator [Photobacterium sp. SKA34]
 gi|89048214|gb|EAR53796.1| osmolarity response regulator [Photobacterium sp. SKA34]
          Length = 239

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLFEQGFQVRSVANGEQ-MDRLLARETFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQT 124

Query: 123 SKD 125
            + 
Sbjct: 125 IEA 127


>gi|317474353|ref|ZP_07933627.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316909034|gb|EFV30714.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1320

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+V+ +  ++        D  + V+ A    EA +   KE   + +V D  M  +     
Sbjct: 1067 LIVEDNLEMQDFISKRLMDK-YDVYRAADGLEALKVL-KEFDIDIVVSDIMMPNMDGMEL 1124

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + ++++    + + V  L  + D E  I G   GA++++ KPF+ E L   ++ L   +K
Sbjct: 1125 LKNIKETVEYSHIPVILLSAKSDLESRINGLELGADAYIEKPFSLEYLMAQIQNLLMNRK 1184

Query: 123  SKDEN 127
            S  E 
Sbjct: 1185 SIKEL 1189


>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
 gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
          Length = 233

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L +D    +  +         F+    TS+ EA +F E+E + + +++D  M  + 
Sbjct: 1   MKTILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHV-DLVLLDIMMPEMN 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     DV +  L  + +   ++ G   GA+ ++LKPF+ E L   +  + 
Sbjct: 59  GWQVCQEIRK---FWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVL 115

Query: 119 QMQKSKDE 126
           +   S+++
Sbjct: 116 RRTISEEK 123


>gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+ D    +  +      +  + VF+  +  +     E E L +  ++D  +  +  
Sbjct: 6   TNILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERL-DLAILDVMLPDMDG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+        V  L  + +    I G   GA+ ++ KPF    L   ++   +
Sbjct: 65  FSICQQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
           LLV+    +         D  + +  A    E  +        + +++D  +     +E 
Sbjct: 4   LLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWD-FITAFDYDLILLDVMLPKLNGIEL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +RQ   G  + V  L         + G  AGA+ +++KPF+ + L   +R L + 
Sbjct: 63  CQRLRQR--GYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRR 118


>gi|39995480|ref|NP_951431.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982243|gb|AAR33704.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
          Length = 461

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD     R++ + +     +    A    EA    + E   + ++ D  M+G+   
Sbjct: 10  TILIVDDERGQREILQTILEGERYETTTAAGGQEALALLD-EREFDVILTDLKMQGMSGM 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +       +  +      +  +   + GA  +L KP  R+TL   +R   +  +
Sbjct: 69  ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 128

Query: 123 SKDENQFL 130
              EN+ L
Sbjct: 129 LLKENRAL 136


>gi|332829438|gb|EGK02087.1| hypothetical protein HMPREF9455_01721 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + ++     ++FGF V  A       +      L + ++ D  +    
Sbjct: 1   MKKILVIEDEKRIAELLGKGLSEFGFEVTLAFDGDTG-KRLISSNLYDLIITDIILPHHN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    V+       V +  L      +  + G  AGA+ +++KPF+   L   +  L 
Sbjct: 60  GFEITRFVK--EKYLHVPIIMLTALGATDDKLDGFDAGADDYMVKPFDLRELNARINVLL 117

Query: 119 QMQKSKDENQFLDAI 133
           +   +  EN+  D +
Sbjct: 118 KRNSNHPENKVPDEL 132


>gi|327396459|dbj|BAK13880.1| transcriptional regulator BaeR [Pantoea ananatis AJ13355]
          Length = 230

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V        G+ V  A++     E   +   P+ +++D  +  +  
Sbjct: 4   KRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEQVGR-WQPDLILLDVMLPVMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +A +R+     D  V  +    D    I   R GA+ +++KP++   +   ++ + +
Sbjct: 63  TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 120 MQKSKD 125
             +   
Sbjct: 120 RARQAK 125


>gi|313499514|gb|ADR60880.1| OmpR_2 [Pseudomonas putida BIRD-1]
          Length = 246

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +  V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 501

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD       +   L    G+ V ++ +   A        LP+ +++D  + G+   E
Sbjct: 13  ILVVDDQPENLHLLSSLLRQVGYNVRQSLNAEMALTSVGA-KLPDLILLDVRIPGMSGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H++     + + + +L    D + ++ G + G   ++ KPF+   +   +    ++ 
Sbjct: 72  LCRHLKSSENTSKIPIIFLSALNDIDSIMEGFQVGGVDYITKPFHNSEVLIRVNTQLRLY 131

Query: 122 KSKDENQF 129
           + + + + 
Sbjct: 132 QLQKQLEL 139


>gi|262199148|ref|YP_003270357.1| Fis family transcriptional regulator [Haliangium ochraceum DSM
           14365]
 gi|262082495|gb|ACY18464.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Haliangium ochraceum DSM 14365]
          Length = 459

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 53/132 (40%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L++D +  +R+   H  +  G  V  A S  E      +     +++ D  M+G+ 
Sbjct: 1   MATILIIDDNETIREGLAHTISRMGHEVLTAASGREGLARFRERPETGFVITDLKMDGMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        +V    +      E  +   + GA  FL KPF+ E +R  +    ++
Sbjct: 61  GVAVLRALSEDAPEVPTMIITAYGTVETAVEAMKLGAFDFLTKPFSPELVRLKVARALEL 120

Query: 121 QKSKDENQFLDA 132
            +++     L+A
Sbjct: 121 FEARSARARLEA 132


>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    +    +      G++V  A    EA      +   + +++D  +      
Sbjct: 8   RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQE-FDLIILDLMLPYVDGY 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR +     + +  L      +  I G  AGA+ +L KPF+ + L   ++ + + 
Sbjct: 67  EVAREVRAVS--PQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKR 124

Query: 121 QK 122
           ++
Sbjct: 125 KQ 126


>gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA]
 gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  +K+   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKP-IDLIITDVMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        L  +    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGCETELIS 131


>gi|306521077|ref|ZP_07407424.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D +  +R++   L    G+ V  AT+  EA    +     + +++D  M     
Sbjct: 7   KKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST--IDLIILDVVMPVKTG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    T   + +L  +      + G  AG + +L KPF+   L   ++ L +
Sbjct: 65  FVACNEIREK---TTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLR 121

Query: 120 M----QKSKDENQ 128
                Q  + E +
Sbjct: 122 RYYIYQGKEKERE 134


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + +  R      G+ V        A      E     +++D  +  +   
Sbjct: 17  RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHES-FELVILDLGLPRLDGL 75

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L         IAG  AGA+ +L+KPF+   L+  +R L +   
Sbjct: 76  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135

Query: 123 SKDE 126
           ++ E
Sbjct: 136 NRPE 139


>gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 239

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 224

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  + EA  +            P+ +++D  +    
Sbjct: 1   MTTILIVEDEKEIRRFVRLALESEGLKIVEAEQLQRGL-IEAATRKPDLVILDLGLPDGD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              FI  VRQ    + + V  L    D +  I    AGA+ +L KPF    L   +R   
Sbjct: 60  GNAFIREVRQ---WSSMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVAL 116

Query: 119 QMQKSKD 125
           +  +   
Sbjct: 117 RRHQRSQ 123


>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+ D    + ++ R+     GF V EA    EA    E+E + +  ++D  M      
Sbjct: 2   NILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETV-DLAIVDVMMPNKDGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R      D+ V  L  + +      G +AG + +L+KPF  + L F ++ L + 
Sbjct: 61  ELCREIR---RYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRR 117


>gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|254882475|ref|ZP_05255185.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1386

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLV+ +  +  +   L +   + + +A +  EA E   K+ + + +V D  M  +   
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEV-DLIVSDVMMPEMDGM 1193

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+       + +  L  +   E  + G  +GA+ ++ KP     L   +  L + 
Sbjct: 1194 ELCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKR 1253

Query: 121  QK 122
            +K
Sbjct: 1254 RK 1255


>gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVLEF 62
           +L+V+    +    +       + V  A     A E  E+ +   + +++D  +  +   
Sbjct: 5   VLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   +  +  + +L         +AG  AGA+ ++ KPF  E L   +R + + 
Sbjct: 65  TVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122


>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
 gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
 gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
 gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|326335904|ref|ZP_08202081.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338
           str. F0234]
 gi|325691868|gb|EGD33830.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338
           str. F0234]
          Length = 241

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +  GF V  A +  E  +   K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPY-DMCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F            V + +L      E +I G ++GA+ +L KPF+ E L   +R + Q +
Sbjct: 65  FTLAKEIREKNEKVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQRK 124


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDES 55
             +LLV+     R    +     GF V EA     A E  E    P      + +++D  
Sbjct: 5   TRILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLM 64

Query: 56  ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +      E    +R     + V V  L  +      I G   GA+ ++ KP++   L   
Sbjct: 65  LPRLDGTEVCTRIR---RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLAR 121

Query: 114 MRELPQMQKSKD 125
           ++ + +  ++  
Sbjct: 122 LKAVLRRSRAAA 133


>gi|326318213|ref|YP_004235885.1| LuxR family two component transcriptional regulator [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323375049|gb|ADX47318.1| two component transcriptional regulator, LuxR family [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 361

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  ATS   A      + +P+ +++D  M G+  F 
Sbjct: 30  VLVVDDVPDNLAVLHDALDESGYTVLVATSGETALARA-AQAMPDVVLLDAMMPGMDGFE 88

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + + ++    + E + A   AG   ++ KP     +   M    Q  
Sbjct: 89  VARRLKAQPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMHVHLQGA 148

Query: 122 KSKDENQF 129
           +   ++  
Sbjct: 149 RRARQDMR 156


>gi|260642598|ref|ZP_05416521.2| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260621410|gb|EEX44281.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1310

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L+VD +  +    +    ++   V  A+   EA +       P+ +V D  M  +   
Sbjct: 1059 TVLVVDDNPDLTDFLKKSLGEYFKRVVIASDGAEALQLIRSHT-PDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +++    + + +  L    D +  ++G + GA+++L KPF  E L   +    + 
Sbjct: 1118 ELCKSIKEDITISHIPIILLTARDDQQSQLSGYKNGADAYLTKPFEIEMLMEIICNRLKN 1177

Query: 121  QKSKDENQFLDA 132
            ++S  + ++L+A
Sbjct: 1178 RESTKK-RYLNA 1188


>gi|302522254|ref|ZP_07274596.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|302431149|gb|EFL02965.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 1928

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +  + G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1808 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1867

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+MP    + +  L  +           +GA+ ++ KP + + L  A+ +  + 
Sbjct: 1868 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRT 1927

Query: 121  Q 121
            +
Sbjct: 1928 K 1928


>gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 581

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL +   + R          G  V  A    EA    E+    + +++D  M     L
Sbjct: 460 RILLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAMLERGAY-DLVLMDIQMPRLNGL 518

Query: 61  EFIAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           E    +R      +   + V  L           G  AG + ++ KPF    L  AM   
Sbjct: 519 EATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAGMDEYVTKPFEPAELTAAMERA 578

Query: 118 P 118
            
Sbjct: 579 L 579


>gi|291288622|ref|YP_003505438.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885782|gb|ADD69482.1| response regulator receiver modulated diguanylate cyclase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 312

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDF-GFMVFEATSVCEAREFCEKELLPNYLVIDES 55
           M +    +L+VD +    KV  ++  D   + +  A S  EA E+  K  +P+ +++D  
Sbjct: 1   MKNKKMHVLIVDDNPQNLKVLGNILKDNTPYGLAFAMSGKEALEYLVKN-VPDMVLLDVM 59

Query: 56  MEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           M  +  F     +        + V ++  + + E ++ G + G   ++ KPFN   L   
Sbjct: 60  MPDMDGFEVCKTLHARAETKGIPVIFITAKSEPEDIVKGFQMGGVDYVTKPFNEAELLMR 119

Query: 114 MRELPQMQKSKDENQ 128
           +    ++++++D  +
Sbjct: 120 INTHMELKRARDLLE 134


>gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
 gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
          Length = 222

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +    +   +  GF V  A+    A +  + E     +V+D S+  +   
Sbjct: 2   RILLVEDHDELSLWLQKALSSSGFAVDLASDGAIADQLLQTERY-ELVVLDVSLPRMSGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V  L    D    + G  AGA+ +L KPF+   L   +R L +  +
Sbjct: 61  EVLAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRRSQ 120

Query: 123 SK 124
            +
Sbjct: 121 GQ 122


>gi|219851955|ref|YP_002466387.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
           palustris E1-9c]
 gi|219546214|gb|ACL16664.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
           palustris E1-9c]
          Length = 576

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++V+ S   ++  R++    G+ VF AT+  +A +    E+ P+ L+ D  M  +   
Sbjct: 13  KVVIVEDSPTQQEYLRYILEKHGYTVFAATNGQQALDLI-GEVRPDLLISDVIMPVMNGY 71

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ V  L    D + +    ++GA++F+ KP+N E L   +R++   
Sbjct: 72  DLCRAIKSDPASQEIPVILLTALSDTKDVALALQSGADNFITKPYNEEYLILRIRQILAP 131

Query: 121 QKSKD 125
           +++  
Sbjct: 132 ERALR 136


>gi|254413669|ref|ZP_05027439.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179776|gb|EDX74770.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 810

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD S       R L  + G+ V  + +  +A +  +    P+ +++D  M  +   
Sbjct: 22  TILIVDDSPDSLSFLRKLLAEQGYTVRVSLNGRQALQSVDLMP-PDLILLDILMPDIDGY 80

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + ++    +    +     GA  ++ KP   + +   +     +
Sbjct: 81  QVCQQLKANPETQAIPIIFISARKETFDKVKAFEIGAADYISKPIATQEVLVRIEHQLHI 140

Query: 121 QKSKDENQFLDA 132
            + + + +  +A
Sbjct: 141 LRLQRQLKQENA 152


>gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056]
 gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058]
 gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059]
 gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter
           baumannii AYE]
 gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter
           baumannii AB0057]
 gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294]
 gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 319

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCIQLKASPITQFIPVIFMTGLSETEHIVRGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|150007457|ref|YP_001302200.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|255013954|ref|ZP_05286080.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262382003|ref|ZP_06075141.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375433|ref|ZP_06985390.1| response regulator DrrA [Bacteroides sp. 3_1_19]
 gi|149935881|gb|ABR42578.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|262297180|gb|EEY85110.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298267933|gb|EFI09589.1| response regulator DrrA [Bacteroides sp. 3_1_19]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      G+ V  A S  EA +      + N L++D  M  +  
Sbjct: 4   TRILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK--DLTVYNLLLLDVMMGEISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ     +  + +L  +     M+ G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  FKMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|119485560|ref|ZP_01619835.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp.
           PCC 8106]
 gi|119456885|gb|EAW38012.1| response regulator receiver domain protein (CheY-like) [Lyngbya sp.
           PCC 8106]
          Length = 501

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L++D      ++   L    G+ V  A S   A E  +   LP+ +++D  M  +   
Sbjct: 7   NILIIDDHLNNLRMLSTLLRQRGYQVRNARSGSIALETVKVS-LPDLILLDIKMPDMSGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   ++ V ++         +   + G N ++ KPF  + +   +     +
Sbjct: 66  EVCRQLKASPETCEIPVIFISALETTFDKVKSFKVGGNDYITKPFQADEVLARVENQLTI 125

Query: 121 QKSK----DENQFLD 131
           Q+ K     +NQ L 
Sbjct: 126 QRQKKLLLKQNQQLK 140


>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    + V EA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +++  +
Sbjct: 119 SRQASKK 125


>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQML-SMYEIDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQQVREHNNT--VPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLR 119

Query: 120 MQKSKD 125
               + 
Sbjct: 120 RSSFQQ 125


>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +RK+ RH     G+ V EA    EA E+ EKE      V+D  M      
Sbjct: 11  RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEP-IELAVVDIMMPNKDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+     D+ V  L  +   +   AG RAG + +L KPF  + L F ++ L + 
Sbjct: 70  QLCREIRED---YDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRR 126

Query: 121 QK 122
            +
Sbjct: 127 YQ 128


>gi|328956993|ref|YP_004374379.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673317|gb|AEB29363.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 230

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57
           M+ +L+++    + +         G+      +     E    E    + +++D  +   
Sbjct: 1   MNKILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPEL 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +RQ+   ++V +  +         ++G   GA+ +++KPF  E L   +R L
Sbjct: 61  NGIDVCRRIRQV---SNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAL 117

Query: 118 PQMQKSKDEN 127
            +  + + E 
Sbjct: 118 FRRIEIESEQ 127


>gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 223

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    + ++ +   +  G++   A    EA +    E   + +++D ++      
Sbjct: 2   KVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECY-DIIILDINLPKKDGF 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ     +V +  L    D +  + G   GAN ++ KPF+ + L   MR L + 
Sbjct: 61  EVLRDIRQ--FNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRR 118

Query: 121 QKSKDENQ 128
           +  ++E +
Sbjct: 119 KSIQEETE 126


>gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    + +V +      G+ V  A     A E   +    + +++D  +  ++ 
Sbjct: 5   RTILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELF-RNNDISLILLDLMLPDIMG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR +     V +  L  + +   +I G R GA+ ++ KPF+  T+      + +
Sbjct: 64  EEICRMVRAVSR---VPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLR 120

Query: 120 MQKS 123
             +S
Sbjct: 121 RVES 124


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L++D    + ++ +      GF V  +T   +  E   +E  P+ L++D  +     +
Sbjct: 2   KILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREK-PDLLLLDWMLPKISGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ     D+ V  L  +   +  I G   GA+ ++ KPF+ + L   +  + + 
Sbjct: 61  DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120

Query: 121 QKSKDENQ 128
            +  D++Q
Sbjct: 121 YRISDKSQ 128


>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|229591084|ref|YP_002873203.1| oxidative stress related two component system, transcriptional
           regulator [Pseudomonas fluorescens SBW25]
 gi|229362950|emb|CAY49878.1| oxidative stress related two component system, transcriptional
           regulator [Pseudomonas fluorescens SBW25]
          Length = 247

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+          F V  A       +  + +   + +V+D  +     F
Sbjct: 11  RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQ-AFDVVVLDVLLPDGDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                Q+   ++  V  L    +    + G   GA+ ++ KPF    L   +  + + Q
Sbjct: 70  -ELCNQLHRRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQ 127


>gi|239616845|ref|YP_002940167.1| response regulator receiver modulated serine phosphatase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505676|gb|ACR79163.1| response regulator receiver modulated serine phosphatase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 381

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    VR + + +    G+ V E  +   + +  E    P+ +++D  +  + 
Sbjct: 1   MKRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAES-FKPDLILLDLMLPDIN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +          DV +  L    D E  +   R+GA  F+ KPF  E +   +R   
Sbjct: 60  GLQLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLLRVRTQL 119

Query: 119 QMQKS 123
           ++   
Sbjct: 120 RIHSL 124


>gi|160886472|ref|ZP_02067475.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483]
 gi|156108357|gb|EDO10102.1| hypothetical protein BACOVA_04483 [Bacteroides ovatus ATCC 8483]
          Length = 1362

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++LLVD +  +    +  F    ++   A +  EA E   KE   + ++ D  M G+   
Sbjct: 1113 TILLVDDNKEMVDYLKDNFKSE-YITLIAGNGEEALEMM-KEQKVDLILSDVMMPGIDGI 1170

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 V++      + V  L  +   E   AG +AGA+ ++ KPF+   L+  +  + + 
Sbjct: 1171 KLCEIVKKNMQTCHIPVILLSAKGSLEAQTAGIQAGADDYIPKPFSINLLKGKINNILKA 1230

Query: 120  MQKSK 124
             Q+ +
Sbjct: 1231 RQRLR 1235


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + +  R      G+ V        A      E     +++D  +  +   
Sbjct: 2   RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHES-FELVILDLGLPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L         IAG  AGA+ +L+KPF+   L+  +R L +   
Sbjct: 61  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 123 SKDE 126
           ++ E
Sbjct: 121 NRPE 124


>gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +R+  +      G+ VF+A    E  E  EKE   +  +ID  M  +    
Sbjct: 6   VLIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEE-IHLAIIDIMMPRMDGIR 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 65  MTMKLREKY-DFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYR 122


>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 239

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V    +       + V  A    +A +   +E  P  +++D  +     +
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEK-PTLILLDWMLPVYDGM 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    +DV +  L  +     + +    G + +L KPF  E L   +R + + 
Sbjct: 66  TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122

Query: 121 QKSKDEN 127
            +   + 
Sbjct: 123 LEKMRQQ 129


>gi|256839824|ref|ZP_05545333.1| two-component sensor histidine kinase [Parabacteroides sp. D13]
 gi|256738754|gb|EEU52079.1| two-component sensor histidine kinase [Parabacteroides sp. D13]
          Length = 968

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+V+ +  +      L N   + +  A +  E  E    E +P+ ++ D  M  +
Sbjct: 715 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIA-AEQMPDLILTDLMMPEM 772

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR+  +   + +  +  +   ++ + G   GA+++L KPFN E L   + +L
Sbjct: 773 DGYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKL 832

Query: 118 PQMQKSKDE 126
            + ++   E
Sbjct: 833 LEQRRLLRE 841


>gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis
           3_1_12]
 gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSY--HLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANILKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
             + D  +  + +
Sbjct: 123 TATSDMEKVPEQL 135


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
 gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM
           17565]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +    + G+ V  A S  EA +          +++D  M  +  
Sbjct: 4   TRILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKL--DICSYQLILLDVMMGEISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  FKMANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLR 121

Query: 120 MQKSKDENQ 128
              + +  +
Sbjct: 122 RTAAAETER 130


>gi|215433475|gb|ACJ66703.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 2151

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +   +G  V  A S  E  E  EK      +++D  M  +  
Sbjct: 2016 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLEQLEKAADIELVLMDVMMPEMDG 2075

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+M     + +  L  +           AGA+ ++ KP + E L   +R   
Sbjct: 2076 YQAMRAIRRMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2134



 Score = 46.0 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 4/112 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+   + R+    L            +  E       E   + +V+D  +  +    
Sbjct: 1872 LLIVEDDPVHRQALLELLGSEDVETVAVGTAAE-ALAALAERRFDCMVLDLGLPDMPGAE 1930

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             I  + +        +                R  A + ++K   + E L  
Sbjct: 1931 LIRRIHEAHGAGGPPLIVYTGRELSRAQETELRRVAEAIVVKDAQSPERLLE 1982



 Score = 39.0 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 17   GRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD 74
             R      GF V  +T V  A +   +   P  + +D  +  +     +  ++       
Sbjct: 1763 LRAAAQGTGFKVLVSTEVEGALDAV-RNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRA 1821

Query: 75   VFVYYLLMEVDFEKMIAGARAGANSFL 101
            + VY + +    +        GA   L
Sbjct: 1822 LPVYTVSV---EDHRERSLNLGAIGHL 1845


>gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 235

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+V+    +        N+ G+ VF+A +  E  +    E   +  ++D  M  
Sbjct: 1   MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNET-IHLAIVDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++      D  V  L  + +    I G   GA+ ++ KPFN   L   +    
Sbjct: 60  MDGIQMTMKLRSKF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2]
 gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    + G+ V       +  +      L + +V+D  + G    
Sbjct: 7   KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQ-MDRALSRELYSLMVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D  + I G  AGA+ +L KPFN + L   +R + +  
Sbjct: 66  SICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRH 124


>gi|24214711|ref|NP_712192.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657759|ref|YP_001845.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195704|gb|AAN49210.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600999|gb|AAS70482.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL +    +R   + +    GF +  A +  E     ++   P+ LV+D  +    
Sbjct: 19  MRTILLTEDEPGIRDTIQIVLESEGFKMIYAMTGKECISLLKES--PDLLVLDVGLPDGS 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++     + V  L         + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 77  GF-EILKELRKKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRR 135

Query: 121 QKSKDENQFLD 131
                E +  +
Sbjct: 136 YDGNSEKKQTE 146


>gi|332876950|ref|ZP_08444703.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332685058|gb|EGJ57902.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 856

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+ +  +R+   ++ +D  + + EA +  E  E  +K  LP+ +V D  M      +
Sbjct: 609 ILIVEDNPDMRRFIHYILSD-DYNIIEAENGEEGFEVAKK-YLPDVVVSDVLMPKVDGFD 666

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  L      E+   G  +GA++++ KPFN   LR  +R+L + +
Sbjct: 667 LCQLLKTNVSTNHIPVILLTAYAMDEQKQVGFESGADAYIAKPFNIRLLRTRVRKLIENR 726

Query: 122 KSKDE 126
           K   E
Sbjct: 727 KKIRE 731


>gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma
           proteobacterium IMCC3088]
 gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma
           proteobacterium IMCC3088]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+ +++    + ++        GF    A S  EA      +   +  ++D  +    
Sbjct: 1   MSSIAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQH-FDLFLLDVMLPDGD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R   L +   + +L   +  E  + G   G + +++KPF+   +   ++   
Sbjct: 60  GFSVCKQLR---LFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 231

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LL++    +    +      G+ V  A    E  E  EKE  P  +++D  +     
Sbjct: 4   TKILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEK-PTLILLDWMLPVYDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +  +  +R++   +D+ +  L        +      G + ++ KPF  E L   +R + +
Sbjct: 63  ITVLRRIRKV---SDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILR 119

Query: 120 MQKSKDEN 127
             + +   
Sbjct: 120 RLEREKRQ 127


>gi|172036052|ref|YP_001802553.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC
           51142]
 gi|171697506|gb|ACB50487.1| putative diguanylate cyclase/phosphodiesterase [Cyanothece sp. ATCC
           51142]
          Length = 594

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++   +    G+ V   TS   A    +    P+ +++D  M  +   
Sbjct: 12  NILIVDDKPSNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMP-PDIILLDIKMPDMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P  T++ V +L    D E  +     G   +++KPF  + +   +      
Sbjct: 71  EVCEQLQQFPETTEIPVIFLSALQDVEDKVKAFEVGGVDYIIKPFQFQEVLARVSLHLAF 130

Query: 121 QKSKDENQFLDA 132
           ++++ + Q L+ 
Sbjct: 131 RQTRYQLQQLNE 142


>gi|218781447|ref|YP_002432765.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762831|gb|ACL05297.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 242

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +    +      G+ V  A    EA E   +   P+ +V+D  +  +  
Sbjct: 10  RRILVVEDEAHIADGLKLNLELNGYEVEIAVDGVEALEKY-RFWGPDLIVLDIMLPQIDG 68

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + ++R       + +  L  +   E  I G   G + +L KPFN +     +  L  
Sbjct: 69  LSVLRNIRLND--QHIPILILSAKGAPEDKITGFSYGTDDYLSKPFNLQEFLLRVERLIS 126

Query: 120 M 120
            
Sbjct: 127 R 127


>gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      + GF V  A    EA+      L  + +++D  M G   +E
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGIE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +    +V +  L    +    I G  AGA+ +L KPF+   L   +  + + 
Sbjct: 73  VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    V    +    + G  V  +    +  EF  +    + +++D  +    
Sbjct: 1   MK-ILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDG-EFLAEVNDYDLIILDLMLPKKN 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G    V  L      E  + G  AGA+ +L KPF  E L   +R L 
Sbjct: 59  GLVVCRELRA--SGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALL 116

Query: 119 QMQKSKD 125
           + +    
Sbjct: 117 RRKSESK 123


>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
 gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           130b]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D    +  +        GF V          +    + + + +++D  +  +  F
Sbjct: 4   SILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQ-VFDAIILDVMLPKLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +    +  V  L    D    I G   GA+ +L KP N   L   +R + +  +
Sbjct: 63  -EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121


>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  ++L+++    +R +  +  N+ G+ + EA++  E  +  E     + +++D  + G 
Sbjct: 13  MKENILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIE-NSNIDLIILDLMLPGI 71

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +    +        + +  L  + D    + G   GA+ ++ KPF+   +   ++  
Sbjct: 72  SGYDVCREI---NPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVC 128

Query: 118 PQMQKSKDEN 127
            +  K  D+ 
Sbjct: 129 LRRIKELDKQ 138


>gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 501

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD   ++R     +    G+ V  A +  EA E    E   N ++ D  M  +   
Sbjct: 6   TILVVDDEKVIRDGCALILQPEGYQVATAANGQEALEILRTEP-INLVLCDLKMPVMGAL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      +V +  +         +   + GA  F+ KPF  + L   ++ + + QK
Sbjct: 65  EVLEVAGTHYPEVPIIIITGHGTVANAVECMQKGAYDFVTKPFRVDHLTLVVKRVLEKQK 124

Query: 123 SKDENQFLDA 132
            + + + L  
Sbjct: 125 LERQARELRE 134


>gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 230

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R        + G  V +A    EA E    E   + +++D  M  +    
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEIL-NENQVHLIILDVMMPKLDGIS 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           A  +      ++ +  L  + +    I G + GA+ ++ KPFN   L   ++   + 
Sbjct: 65  ATYKIREK-KNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120


>gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
          Length = 222

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATH-IELIITDVMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|253569328|ref|ZP_04846738.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841347|gb|EES69428.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1324

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +        +   + V  A +  EA +  E E   N ++ D  M  +   
Sbjct: 1081 SVLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHE-YINLVISDIMMPEMDGL 1138

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++     + + +  L  +   E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1139 ELCEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSN 1198

Query: 121  QKSKDENQFLDA 132
            ++     +F+++
Sbjct: 1199 RERLRR-RFIES 1209


>gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D  +++R + + +  +  + V EA +  EA E   +    + +++D  M    
Sbjct: 1   MKKILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQNPEISLVILDVMMPQYD 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R     ++V V  L    D +  ++  R+GAN ++ KPF+ E L      L 
Sbjct: 61  GMEVLRRIRLQ---SNVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLM 117

Query: 119 QMQKSKD 125
           +M ++K 
Sbjct: 118 RMVRNKS 124


>gi|197285086|ref|YP_002150958.1| two-component response regulator of kdp operon [Proteus mirabilis
           HI4320]
 gi|227355501|ref|ZP_03839896.1| two-component response regulator of kdp operon [Proteus mirabilis
           ATCC 29906]
 gi|194682573|emb|CAR42615.1| two-component response regulator of kdp operon [Proteus mirabilis
           HI4320]
 gi|227164297|gb|EEI49186.1| two-component response regulator of kdp operon [Proteus mirabilis
           ATCC 29906]
          Length = 227

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +  R    + GF V++A+              P+ +++D  +      
Sbjct: 5   NILIVEDEKEILRFVRLALENEGFRVYDASECQRGL-IEAASRKPDLVILDLGLPDKDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++     +   +  L      +  +    AGA+ +L KPF    L   +R   + 
Sbjct: 64  C-FIQDFRQWSSTPIIVLSARDSEQDKVDALDAGADDYLTKPFGMSELLARVRASLRR 120


>gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 239

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A    +A         P+ +++D  +  
Sbjct: 1   MNKAQILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAIS-YKPDVIILDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      + ++   ++V +  +    D    I     GA+ +L KPF+ + L   +R   
Sbjct: 60  IDGV-EIISKIRTWSNVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVAL 118

Query: 119 QMQKSKDE 126
           +     +E
Sbjct: 119 RRVNYNNE 126


>gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong]
 gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     RK+         + V+ A +  EA +  E  +  + +++D  M G+  F 
Sbjct: 5   ILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEA-IKIDVVLLDIVMPGMDGFE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  +    D E  + G   GA+ FL KP    +L   ++ L +M+
Sbjct: 64  LCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLVRMK 123

Query: 122 KSKDENQF 129
              ++ + 
Sbjct: 124 AVSNQIKL 131



 Score = 51.7 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 24/149 (16%)

Query: 3   SLLLVDSSHI----VRKVGRHLFND--FGFMVFEATS----VCEAREFCEKELLPNYLVI 52
           ++L++D   I    + ++           F     T     +    E     L+P+ L+I
Sbjct: 168 TILIIDDDAIWFNRISEIIT-CLTKKVELFECINYTDNKNKLLTDLEKIATSLVPDLLII 226

Query: 53  D--ESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKM----------IAGARAGANSF 100
           +    +E  L   A +R            L  E   E            + G   G N F
Sbjct: 227 NNQIILEDPLRVYAILRSKDELKQSAFILLT-EDSLENRDHDDISTDKLLKGLEMGINDF 285

Query: 101 LLKPFNRETLRFAMRELPQMQKSKDENQF 129
                +   L   ++   + ++ +D+ + 
Sbjct: 286 FPYSIDNNELLARIKTQLRRKQYQDQLKQ 314


>gi|311278811|ref|YP_003941042.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Enterobacter cloacae SCF1]
 gi|308748006|gb|ADO47758.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Enterobacter cloacae SCF1]
          Length = 461

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    VR++    F+  G     A++   A E    +  P+ +++D  M 
Sbjct: 1   MKTRYRILIVDDEDNVRRMLATAFSLQGHETHCASNGRTALEHF-ADTPPDVVLMDIRMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +               + +  +    + E  +   R+GA  +++KPF+ + L   ++  
Sbjct: 60  EMNGIDTLKVMRAQQPRIPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRA 119

Query: 118 PQMQKSKDE 126
            QMQ  K E
Sbjct: 120 MQMQAMKQE 128


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +  +         F V    +  EA E+ +     + +V+D  +      
Sbjct: 2   RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTY-DLIVLDIMLPKVNGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R+     +  V  L      E  I G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  EVIKKLRENKN--ETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRR 118

Query: 121 Q 121
           +
Sbjct: 119 K 119


>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++     ++ G+ + +A    EA E  E +   + +++D  M  +   
Sbjct: 4   RILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLE-QKSIDLVILDVMMPNLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121
               R     + + +     + +    I G   GA+ ++ KPFN   +   ++ L +   
Sbjct: 63  EVTKRIR-KNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSN 121

Query: 122 --KSKDENQFLDA 132
             ++  ++  ++A
Sbjct: 122 YTQASKQDHVIEA 134


>gi|126658801|ref|ZP_01729945.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126619899|gb|EAZ90624.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 594

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++   +    G+ V   TS   A    +    P+ +++D  M  +   
Sbjct: 12  NILIVDDKPPNLRILSTMLVKAGYKVRAVTSGNMALTAAKTMP-PDIILLDIKMPDIDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
                ++Q P   ++ V +L    D E  +    AG   +++KPF  E +R  +      
Sbjct: 71  QVCQELKQFPETAEIPVIFLSALQDVEDKVKAFEAGGVDYIIKPFQFEEVRARVSLHLTF 130

Query: 119 --QMQKSKDENQFLD 131
                + +  NQ L+
Sbjct: 131 RQTRYQLQQLNQELE 145


>gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +         G+ V    S  EA E    +     +++D  + G+  F 
Sbjct: 8   ILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYD-RFALIILDVMLPGMDGFA 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R   + + V V  L    D    + G ++GA+ +L KPF+       +  + + 
Sbjct: 67  VCERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRR 123


>gi|307943679|ref|ZP_07659023.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
 gi|307773309|gb|EFO32526.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L+V+    +  V        G+    A     A     K    +++V+D  +    
Sbjct: 1   MKSILVVEDDRNISDVICFALEKAGYRAVVAPDGLAAVTTF-KGSSFDFIVLDVGLPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R M     V + +L    +    I G   G + ++ KPF+   L   +  + 
Sbjct: 60  GLEVCRQIRCMSE---VPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVSAIL 116

Query: 119 QMQKS 123
           +  K 
Sbjct: 117 RRGKL 121


>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++        G  ++ A +  EA +      + +  +ID  M  + 
Sbjct: 1   MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEV-DIAIIDIMMPQID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   VR++    D+ V  L  + ++   I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  GY-HLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRR 118

Query: 121 QK 122
             
Sbjct: 119 YN 120


>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 261

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +R        + G  V +A    EA     +E   + +++D  M  +   
Sbjct: 8   SVLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEAL-MVLEEEEVHLIIMDIMMPRMDGI 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +       + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 67  KATFKIRES-KKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 123


>gi|312967522|ref|ZP_07781737.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           2362-75]
 gi|312287719|gb|EFR15624.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           2362-75]
          Length = 461

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGALDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E   + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEE-IDLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L++D +     +   + ++  + V   T              P+ +++D +M  +   E
Sbjct: 34  ILVIDDTPENLHLLSTMLSERQYKVRSVTKGSTGLRGAIAAP-PDLILLDINMPEMNGYE 92

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V ++    D    +     G   F+ KPF+ + +   ++    + 
Sbjct: 93  VCEQLKAHETTCDIPVIFISALGDVLDKVNAFNVGGVDFITKPFHVDEVLARIQTHLTLH 152

Query: 122 KSKDENQ 128
           + + + Q
Sbjct: 153 RLQQQQQ 159


>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +       F V   T   +  E   K    + +++D  + GV 
Sbjct: 1   MSKVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKND-FDMIILDIMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ +  +    +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRE---AKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116

Query: 119 QMQKSKDENQF 129
              +    NQ 
Sbjct: 117 NRYQRLVNNQM 127


>gi|149925935|ref|ZP_01914198.1| response regulator [Limnobacter sp. MED105]
 gi|149825223|gb|EDM84434.1| response regulator [Limnobacter sp. MED105]
          Length = 1026

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD S + R +  H+   +G+ V  A S  EA E  E++     ++ D  M G+   
Sbjct: 12  RILVVDDSVVERNLFVHMVAKWGYPVEFAASGQEAIELVERD-RFQLVLADWQMPGMQGT 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ+ LG   ++  +  + D E +I    AGA+  L KP +   L   ++   + 
Sbjct: 71  ELCVALRQLDLGQYTYIILMSAQNDEEFLIKALDAGADDVLTKPVDGNELEARLQSAVRR 130

Query: 121 QKSKDENQF 129
            + +     
Sbjct: 131 IELQARLAR 139



 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            S+++VD S    ++   + + +G+ V  A +  EA    EK   P++++ D  M G+  
Sbjct: 450 KSIVIVDDSRSFLRIFEAMLHSWGYTVHSAKNGHEALALIEKH-QPDFVLTDWDMPGMSG 508

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR        ++  +      + ++   R GA+ F+ KP N   L+  ++   +
Sbjct: 509 IELCEQVRAQKQNAYTYIIMITGYASRDDLLNSLRVGADDFMTKPVNPGELKVRLKTAER 568

Query: 120 M--------QKSKDENQFLDAI 133
           +        ++  + +Q  +A+
Sbjct: 569 IADLHMGLERRHTELSQLYEAL 590


>gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +R+  +      G++VF+A    E  E  EKE   +  +ID  M  +    
Sbjct: 6   VLIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEE-IHLAIIDIMMPRMDGIR 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 65  MTMKLREKY-DFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYR 122


>gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
 gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LL+D    + ++     +  GF V              K+      V+D  M G   ++
Sbjct: 3   ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARL-KQDQFELAVVDIMMPGKNGMD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +RQ      + V  L    +    I G   GA+ ++ KP N   L   +R + +  
Sbjct: 62  LLRELRQSSS---LPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRS 118

Query: 122 KSKDE 126
            ++ E
Sbjct: 119 DTQQE 123


>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
 gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|332289758|ref|YP_004420610.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis
           UMN179]
 gi|330432654|gb|AEC17713.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis
           UMN179]
          Length = 239

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD       +   +     F V    +  +A      +L  + +++D  M   G
Sbjct: 1   MPKILLVDDDVEFTSLLAEVLAMESFEVEVVHNGEDALHTL--DLSYDLILLDIMMPKLG 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ        V  L    D    I G   GA+ +L KPFN   L   ++ + 
Sbjct: 59  GIETLKQIRQKYT---TPVLMLTARGDDVDRILGLELGADDYLSKPFNDRELVARIKAIL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|330995456|ref|ZP_08319361.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329575524|gb|EGG57062.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 919

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             LL+V+ +   R    H  +   F V EA    E  E   +E  P+ ++ D  M     
Sbjct: 662 KKLLVVEDNADFRAYLVHELS-ADFDVVEAGDGVEGEEMVREEW-PDLVISDLMMPRCDG 719

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           + F   ++     + +    L  ++  +  I   +AGA+S++ KPFN E L+  +R+L +
Sbjct: 720 IAFCQRMKNDIHTSHIPFILLTAKMSDDARIESYKAGADSYISKPFNFELLQVRVRKLIE 779

Query: 120 MQKSKDE 126
            ++++ E
Sbjct: 780 QREARKE 786


>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   N +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-NLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|294054186|ref|YP_003547844.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613519|gb|ADE53674.1| response regulator receiver sensor signal transduction histidine
           kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 380

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++   +    G     A +  EA     +E  P  +++D  M GV   
Sbjct: 17  RILIVDDETKNLQLVGEILRRVGMPFIFAINGEEALT-VSREQQPALILLDIMMPGVDGL 75

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + V +L    +   +++G  AG   ++ KPF +E L   +R   Q+
Sbjct: 76  TVCKQLKEDPQTAHIPVIFLTAATELTDVVSGFAAGGVDYIKKPFIKEELLARVRTHLQL 135

Query: 121 QKSKDENQFL 130
             ++ E   L
Sbjct: 136 HYTQQELSAL 145


>gi|289674468|ref|ZP_06495358.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           FF5]
          Length = 145

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +V +  +      + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQ-MDRLLAREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q 
Sbjct: 71  SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQA 130

Query: 123 S 123
           +
Sbjct: 131 A 131


>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
 gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
          Length = 223

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    ++ +      + G  V  A    EA      E   + +++D  +    
Sbjct: 1   MSKILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKY-SEQTFDLVLLDIMLPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    ++V +  L    + E  I G    A+ ++ KPF+   L   +  + 
Sbjct: 60  GYGVCEVIRQK---SNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVL 116

Query: 119 QMQKSKD 125
           +    +D
Sbjct: 117 RRSSRQD 123


>gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
 gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae
           pv. tomato T1]
          Length = 222

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ++ G+MV  A     A    ++   P+ +++D  M G+  F 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGTSALLRIQR-RRPDLILLDAMMPGMDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P  +++ V ++    D E ++ G  AGA  +++KP     +   +    +  
Sbjct: 72  TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131

Query: 122 KSKDENQ 128
           ++    +
Sbjct: 132 RTLQSAR 138


>gi|254414545|ref|ZP_05028311.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178775|gb|EDX73773.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 413

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      ++      + G+ V  A S   A    EK  LP  +++D  M  +    
Sbjct: 10  VLIVDDQPNNLRLLSTTLTEAGYRVRNAISAKMALMGIEKA-LPQLILLDIMMPQMDGYE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H++       + + +L    +    +     G   ++ KPF  + +   +     + 
Sbjct: 69  LCQHLKSDERTQHIPIIFLSALDNEWDKVKAFEVGGTDYITKPFQVKEVLSRVNNQLMVV 128

Query: 122 KSKDE 126
           + + +
Sbjct: 129 RQQQQ 133


>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
 gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
 gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEE-VVDLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKITKQL 126


>gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF V +A    EA E+ +K  + + L++D  M G+ 
Sbjct: 1   MQTILVCDDDKQIVEAIDIYLTGEGFKVIKAYDGYEALEYLDKNEV-DLLIVDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRR 118


>gi|152995590|ref|YP_001340425.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836514|gb|ABR70490.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +  + + + +     V  A            +   + +++D  M  + 
Sbjct: 1   MPHILIIDDDVELSDLLKEVLSFENCAVSAAYDGEAGLAAM--DDSVDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++Q+    DV V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GF-ETLKQLREKWDVPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRR 117

Query: 121 QKSKDENQF 129
            ++    Q 
Sbjct: 118 TQAGKGQQQ 126


>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis H37Rv]
 gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 02_1987]
 gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T92]
 gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis 210]
 gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
 gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis W-148]
 gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 253

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|332798879|ref|YP_004460378.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696614|gb|AEE91071.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 224

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +  F +  + V  AT   EA +  + E  P+ +++D +M  +  
Sbjct: 3   TKILIVDDEADIVAMLKGFFENRNYDVLTATDGIEAIK--QSERQPDIILLDINMPQLDG 60

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R         + +L   ++    + G   G + ++LKPF+   L   +    +
Sbjct: 61  LSVCRRIR---DYVSCPILFLTARIEDADKVKGFSVGGDDYILKPFSIIELEARVAAHLR 117

Query: 120 MQKSK 124
            +K +
Sbjct: 118 REKRR 122


>gi|327404314|ref|YP_004345152.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319822|gb|AEA44314.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 230

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +LLV+    +  V        G+ V   ++  E       E   +  + D  M 
Sbjct: 1   MKSKAKILLVEDDTNLGFVISDQLKSEGYQVVLCSNGMEGHMRF-SEDEFHLCIFDVMMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               F        +  +V + +L  +   E  +AG  AG + +L KPF+ + L   ++ L
Sbjct: 60  KKDGFTLAKEIRTMNQEVPIIFLTAKAMTEDKVAGFNAGGDDYLTKPFSFDELSVRVKAL 119

Query: 118 PQMQKSKDENQF 129
            +    +DE + 
Sbjct: 120 LKRVNIQDEPEQ 131


>gi|312131429|ref|YP_003998769.1| transcriptional regulator, crp/fnr family [Leadbetterella
           byssophila DSM 17132]
 gi|311907975|gb|ADQ18416.1| transcriptional regulator, Crp/Fnr family [Leadbetterella
           byssophila DSM 17132]
          Length = 345

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++ +  +R+    +    GF V  A +  E  +   +E +P+ +V D  M  +  +
Sbjct: 2   RILLIEDNQEIRENICEILELDGFDVITAANGKEGLDLA-RESVPDLIVCDIMMPVMDGY 60

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                + + P   D+   +L  + +      G   GA+ ++ KPF    L  A+R   + 
Sbjct: 61  TVLYFLSKEPKTADIPFIFLTAKAERLDFRKGMEMGADDYITKPFEDVELINAIRSRLKK 120

Query: 121 QKSKDEN 127
           ++   + 
Sbjct: 121 KELVRKE 127


>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A +  EA      +     +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++   +++ +  L  + D    I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
           (paired with YvrG) [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 248

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           S+L+VD    +  + + +    G+  + +A S  EA    +   + + +V+D  M G+  
Sbjct: 16  SILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKV-DLIVLDVMMGGMSG 74

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    +D  +++L         ++G   GA+ ++ KPFN   L   +R   +
Sbjct: 75  FEACTLIRE---YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 131

Query: 120 MQKSKDE 126
                 E
Sbjct: 132 RTYQSKE 138


>gi|218129290|ref|ZP_03458094.1| hypothetical protein BACEGG_00867 [Bacteroides eggerthii DSM 20697]
 gi|217988467|gb|EEC54788.1| hypothetical protein BACEGG_00867 [Bacteroides eggerthii DSM 20697]
          Length = 1487

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F+   + + EA    E  +   K LLP+ ++ D  M        
Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALK-LLPDIIISDVMMPEKDGIAM 1276

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  ++ L  Q Q
Sbjct: 1277 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLVQRQ 1336

Query: 122  KSK 124
            K +
Sbjct: 1337 KLQ 1339


>gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ + +A    EA E  E+E + + L++D  M  + 
Sbjct: 1   MYNILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEV-HLLLLDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GIRATLKIREKNS-IPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRR 118


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    + +D  F V  A +  +   F   + + + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGL-FLASQNIYDAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|29348306|ref|NP_811809.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340210|gb|AAO78003.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1326

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +        +   + V  A +  EA +  E E   N ++ D  M  +   
Sbjct: 1081 SVLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHE-YINLVISDIMMPEMDGL 1138

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H++     + + +  L  +   E  I G   GA++++ KPF+ E LR  +  L   
Sbjct: 1139 ELCEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSN 1198

Query: 121  QKSKDENQFLDA 132
            ++     +F+++
Sbjct: 1199 RERLRR-RFIES 1209


>gi|23010703|ref|ZP_00051302.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +  +           V  A    E  +    +   + +V+D  + G     
Sbjct: 10  ILVVEDDREISALVARYLRANDCRVSLAGDGRE-MDRVLADARVDLIVLDLMLPGEDGLS 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G+ V +  L  + +    I G   GA+ +L KPFN   L   +R + + +
Sbjct: 69  LCRRLRA---GSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 125

Query: 122 KSKDEN 127
            S+ ++
Sbjct: 126 GSEPQD 131


>gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1239

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD S  +      L  D  + V  AT   +A    ++    + +V D  M      
Sbjct: 837 KVLVVDDSPEMLGYLSELLRD-DYSVATATDGEQAWALLQRRP-IDVVVSDVMMPKLDGF 894

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++  P    + V  +      E  ++G  +GA+ ++ KPF+   L+  +R + +M
Sbjct: 895 GLTARIKGSPGFAHLPVILVTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAVLRM 954

Query: 121 QKSKDEN 127
            + + E 
Sbjct: 955 SQVQTEL 961


>gi|317475260|ref|ZP_07934526.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316908514|gb|EFV30202.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1487

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 5/123 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F+   + + EA    E  +   K LLP+ ++ D  M        
Sbjct: 1219 LLVEDNAELRIFLRSIFSPE-YRIVEAADGMEGCDKALK-LLPDIIISDVMMPEKDGIAM 1276

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  ++ L  Q Q
Sbjct: 1277 TRELRADMTTSHIPIVLLTAKSSIESKLEGLEYGADDYITKPFSATYLKARVKNLLVQRQ 1336

Query: 122  KSK 124
            K +
Sbjct: 1337 KLQ 1339


>gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1157

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD               +   V  A    E+    E+    + +++D  M  +  
Sbjct: 1037 KKILIVDDDMRNIFALSSALQTYDMQVEIANDGEESLTKLEETAGIDMVLMDIMMPKMDG 1096

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + H+R+      + +  L  +   E       AGAN ++ KP + + L   M+   +
Sbjct: 1097 YDAMRHIRKQQKWAKLPIIALTAKAMKEDRDKCIEAGANDYITKPVDVDRLLALMQIWLE 1156

Query: 120  M 120
             
Sbjct: 1157 Q 1157



 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +++V+       + +    + G+         +A E   +   P+ +++D  + G     
Sbjct: 765 VVIVEDDKNFAAILQDYAKEHGYQSILVHDGDQAVETV-QNNHPDAVILDIMLPGKDGWQ 823

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
            +  ++  P    + V+ +         +   + GA SFL KP N E L
Sbjct: 824 ILKELKNDPETAGIPVHLMSAGDAAVNRVR--KEGAISFLKKPINTEVL 870



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 3/104 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++   +     R L    G  V +A     A      E     +++D ++     
Sbjct: 886 KQILLIEDHKMQSHALRELMEKQGITVDQAFDGESAFRML-TESEYQCVILDINLPDISG 944

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103
           L+ +  ++++    ++ V         +  ++     AN+ ++K
Sbjct: 945 LDLLDKIKEVERFAELPVIVNTAMELDKTSVSRLMQYANAMVVK 988


>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        GF V  A     A         P+ +++D  + G+   
Sbjct: 5   TILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARA-CRPDLVILDVMLPGLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V+V  L    D    + G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 64  EVCRRLHQETA-VYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTR 122

Query: 123 S 123
           +
Sbjct: 123 A 123


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + +      +D  ++V  A    EA E  +     + +++D  +  + 
Sbjct: 1   MK-ILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDV-FEYDLILLDVMLPKID 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  +         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 59  GISLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRR 118


>gi|307592392|ref|YP_003899983.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306986037|gb|ADN17917.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 395

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 48/126 (38%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D      ++   +  + G+ V  A +   A     K  +P+ +++D  M  +  F 
Sbjct: 8   ILIIDDEVENLRLLALILGEAGYQVRSAINGRAALG-VIKNQIPDLILLDVKMPVMDGFE 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ + +L         +     G   ++ KP++   +   +     + 
Sbjct: 67  LCQTLKAASDWCDIPIVFLSAAEGVSDKVKAFELGGVDYITKPYHAAEVIARVHIHLSLH 126

Query: 122 KSKDEN 127
           + K+E 
Sbjct: 127 QLKEEL 132


>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +RK      N  GF V EA S  EA +   +   P  +V+D  + G+  F
Sbjct: 6   KVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITR-TQPKVVVLDLMLPGIDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      ++ +  L  +      I G   GA+ +++KPFN   L   +R   +   
Sbjct: 65  EVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKID 124

Query: 123 SKD 125
           +  
Sbjct: 125 NAK 127


>gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLLVD    +R+      +  GF V    S  EAR         + +++D  M G     
Sbjct: 8   LLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNAN-AIDLVILDIMMPGEDGLS 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              H+R+    +++ V  L  + +    I G   GA+ ++LKPF+   L   ++ + + 
Sbjct: 67  LCRHIRE---TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 122


>gi|16329450|ref|NP_440178.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651932|dbj|BAA16858.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 840

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++  +D S +  K+ +      G+ VF A     A      ++ P+ +V+D  M G+  F
Sbjct: 8   TVFAIDDSPLNLKILQRFLEKQGWKVFIAEDGLTAITEI-NQVQPDIIVLDIMMPGIDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   ++ + +L    D + ++ G   GA  ++ KPF +E +   ++   ++
Sbjct: 67  EVCRRLKAAPATAEIPIIFLSALTDQKSIVKGLELGAVDYIHKPFQQEEIITRLQLQLKL 126

Query: 121 QK----SKDENQFLDA 132
            +       +NQ L+ 
Sbjct: 127 HQTNQALLQKNQQLEE 142


>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|323698577|ref|ZP_08110489.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio sp. ND132]
 gi|323458509|gb|EGB14374.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio desulfuricans ND132]
          Length = 346

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD       +      D  + V  A +  EA E       P+ +++D  +  +  
Sbjct: 7   QTVLVVDDIPTNLDLLVETLKDE-YRVLAALNGREALEIVHSATPPDIVLLDVMLPHMDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      ++ V ++      E    G  AG   ++ KP +   +   +R    
Sbjct: 66  YTVCREIKADLRSRNIPVIFVTARDQEEDQTRGFEAGGVDYIAKPISPAVVLARVRTHLA 125

Query: 120 MQKSKDENQF 129
           +       + 
Sbjct: 126 LHNQNLALER 135


>gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++ LV+    +     +     GF V          E    E  P+ +++D  +  +  F
Sbjct: 4   TIWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMM-TEKKPDLVILDVGLPDINGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               + +    D+ V +L    D    + G   GA+ ++ KPF+   +   +R + +   
Sbjct: 63  ELCRKILTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTILRR-- 120

Query: 123 SKDENQFLD 131
           S  +N+ L+
Sbjct: 121 SLKQNRLLN 129


>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 268

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    +      +    G++V    +     E  +     + L++D  +    
Sbjct: 33  MK-ILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTY-DLLILDWMLPEKT 90

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+   G ++ V +L  +   +  + G  AG + +L+KPF    L   +R L 
Sbjct: 91  GLEICQELRRQ--GKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALL 148

Query: 119 QM 120
           + 
Sbjct: 149 RR 150


>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 237

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF V       E  E    +  P+  ++D  + G+  
Sbjct: 4   THVLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRAD-RPDIALLDVMVPGLDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 63  VSLCRRIR---DESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|258406510|ref|YP_003199252.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
 gi|257798737|gb|ACV69674.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
          Length = 458

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + R +  + G+ V EA +  +A       L P  +V+D  M G+   
Sbjct: 11  RVLVVDDEEALRLMLRAVLEEQGWEVDEAANGEKALHRVTA-LEPQVIVLDIRMPGISGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  L      +  +   + GA  FL KP + E +   +    +  +
Sbjct: 70  EVLGRLQADYRHIPVIMLTAYGTVDTAVEAMKLGAFDFLAKPADNEEIISVLDRALEYSR 129

Query: 123 SKDEN 127
                
Sbjct: 130 YLRRE 134


>gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 304

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF     T   EA    E+E  P+ +++D  + G+
Sbjct: 79  MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFERE-QPDLILLDLMLPGM 137

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
                   +R+      V +  L  + D   ++ G  +GA+ ++ KPF  + 
Sbjct: 138 NGIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 186


>gi|254387240|ref|ZP_05002503.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194346048|gb|EDX27014.1| two-component system sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1339

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+VD           +    G  V  A    +  E   +    + +++D  M  +   
Sbjct: 1220 TVLVVDDDARNLFALSGVLELHGVRVLHAEDGRKGIEALTRHAGVDLILMDVMMPELDGY 1279

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               A +R+MP    + +  +  +           +GA+ ++ KP + + L   +R     
Sbjct: 1280 AATAEIRRMPEYAALPIIAVTAKAMPGDREKSLASGASDYVTKPVDADDLIARVRHWLTR 1339


>gi|170724123|ref|YP_001751811.1| osmolarity response regulator [Pseudomonas putida W619]
 gi|169762126|gb|ACA75442.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 246

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +    F   G+      +  +  +   +  + N +V+D  + G    
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQ-MDRLLQREVFNLVVLDLMLPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            A  R       + +  L  + D    I G   GA+ +L KPFN + L   ++ + + Q
Sbjct: 71  SACKRLRQSNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129


>gi|94264442|ref|ZP_01288231.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455132|gb|EAT05354.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D   ++RK+       +G+    A     A E  ++   P   +ID  M G+ 
Sbjct: 1   MK-ILVADDDPVIRKMLTTQLKGWGYQPLTAADGQAAWEIMQQPDAPPLALIDWMMPGLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+ P  +  ++  L  +     +I G  AGA++++ KP N   L   +R   
Sbjct: 60  GLTLCRRIREQPGPSAPYLIMLTTKSTPADVINGLEAGADAYITKPHNAAELHARIRVGL 119

Query: 119 QMQKSK 124
           +  + +
Sbjct: 120 RSIEHR 125



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG---FMVFEATSVCEAREFCEKELL-PNYLVIDESM 56
           M  +LL++       + RH   +     F +  A S+  A      E + P+ +++D ++
Sbjct: 146 MPLVLLIEDDPGETLLIRHQLTERNVDAFALHSADSLAAATRLLTGEGVVPDVVILDLNL 205

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +  I  V +     D  +  L    + E       AGA+ FL K  +  TLR A+R 
Sbjct: 206 PDSVG-IRTVERCRSLCDSPIVVLSGNDEPEDRRLALEAGADDFLAKGGDGPTLRRALRY 264

Query: 117 LPQMQKSKDENQFLDAI 133
                +   + +   A+
Sbjct: 265 AIIRHRRDSDMRLAAAV 281


>gi|308273138|emb|CBX29741.1| Acetoacetate metabolism regulatory protein atoC [uncultured
           Desulfobacterium sp.]
          Length = 450

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD +  + +  + L  D GF V  A++  E  +  ++E  P+ +++D  M G+   
Sbjct: 4   SILIVDDNPSIIQSLKGLLTDEGFEVITASNGYEGLKLIDEES-PDLVLLDIWMPGIDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +       + V  +    + E  +   + GA   + KP + + +   +      ++
Sbjct: 63  ETLKQIKKDNPYIQVIIITGHGNIETAVNAIKLGAYDLIGKPLSIDKIIVTINNALNFRR 122

Query: 123 SKDENQFL 130
            ++EN++L
Sbjct: 123 LEEENRYL 130


>gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 237

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    +R+         G+ VF+A    E  +  ++E   +  ++D  M  +    
Sbjct: 6   ILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEE-IHLAIVDVMMPRMDGIT 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             V+      D  V  L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 65  MTVKLREKY-DFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYR 122


>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD+   VR V + L  + GF V E+    EA +        + + +D  + G
Sbjct: 1   MKNIKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNY-SLISLDVMLPG 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R+    +++ +  L    +    + G   G + ++ KPF+ + +   ++ 
Sbjct: 60  LDGWTVCKKIRER---SNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKA 116

Query: 117 LPQM 120
           + + 
Sbjct: 117 VLKR 120


>gi|224540392|ref|ZP_03680931.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224517994|gb|EEF87099.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1421

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R   R +  D+ + V EA +  EA E   ++   +++V D  M  +   
Sbjct: 1167 NILVVEDNADMRGYIRSILRDY-YNVLEACNGAEAIEILNRQS-IDFIVSDLMMPVMDGI 1224

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V++    + +    L  +   E  +   R G + +LLKPF+   L   +  + + 
Sbjct: 1225 ELSRRVKETFANSHIPFLMLTAKTSPEARLESYRTGVDEYLLKPFDETLLLTRIENILEN 1284

Query: 121  QKSKDEN 127
            ++     
Sbjct: 1285 RRRYQRQ 1291


>gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R + +    + G+ V       +  +      L + +V+D  + G    
Sbjct: 7   KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQ-MDRALSRELYSLMVLDLMLPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D  + I G  AGA+ +L KPFN + L   +R + +  
Sbjct: 66  SICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRH 124


>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
 gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
          Length = 888

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD + +  KV R L    GF V  A+   +A +      +P+ +++D  M G+   
Sbjct: 770 RILVVDDNAVNLKVTRALLRKSGFQVDIASRGEDAIDSIRAS-VPDLVLMDIQMPGMDGL 828

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +RQ P    + +  L   V  E   A   AG N +L KP +   L   +    
Sbjct: 829 ATTRLLRQDPDFRHLVIIGLTANVSKEDRQACLDAGMNDYLTKPISLLKLSECLSRWL 886


>gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 246

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF V  A     A +  +    P+ LV+D  + G   
Sbjct: 20  RRILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQA-WQPDLLVLDVMLPGFDG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    D   M+ G   GA+ ++ KPF+   L   +  L +
Sbjct: 79  LEVCRRVQA---TRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 135

Query: 120 MQKSKD 125
             +   
Sbjct: 136 RVERAA 141


>gi|281424136|ref|ZP_06255049.1| sensor histidine kinase/response regulator [Prevotella oris F0302]
 gi|281401793|gb|EFB32624.1| sensor histidine kinase/response regulator [Prevotella oris F0302]
          Length = 634

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+VD S    +    + +   F V  A    EA    E E  P+ ++ D  M  +    
Sbjct: 389 LLIVDDSEDFLEFMAEVLSHK-FHVRVAHDGKEALMRVE-EHRPDVILSDVMMPEMDGNA 446

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +++     D+    L   V     +     GA+ ++ KPF+ + L   +  L +
Sbjct: 447 LCRALKENRNTCDIPFIMLTARVAEAHRMESLELGADDYITKPFSMDLLDLRISNLIK 504


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +         G+      +     E    E   + +++D  +    
Sbjct: 1   MSKILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSED-FDAILLDLMLPEIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R+  +     +  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GIEVCRRIRREKI---TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116

Query: 119 QMQKSKDEN 127
           +    ++++
Sbjct: 117 RQVDLEEQD 125


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A     A +    +L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAA-SQLRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130

Query: 122 KSKD------ENQFL 130
           +         EN+ L
Sbjct: 131 ERAKVIAKNSENEKL 145


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+ +  +R     + +  G  +  AT+  EA E       PN +V D  M  +  F
Sbjct: 474 RVLVVEDNPDMRSYLADILS-AGHEIVLATNGREALESIAA-KRPNVIVSDVMMPEMDGF 531

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V  L       + + G   GA+ ++ KPF+   LR  +R   ++
Sbjct: 532 ELVRRLKGDPALRDIPVLLLTARASGAEAVGGLDVGADEYMSKPFDPLELRARVRAAERL 591

Query: 121 QKS----KDENQFLDA 132
            ++      +N  L A
Sbjct: 592 HRAYLELAAKNDELAA 607


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPY-DLVLLDLGLPKRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKD 125
           Q  + 
Sbjct: 119 QSGRS 123


>gi|75906349|ref|YP_320645.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75700074|gb|ABA19750.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 470

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +    ++   +    GF V +A +   A   C+  LLP+ +++D +M  +   
Sbjct: 12  NILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQM-LLPDVILLDVNMPEMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                ++     +D+ V ++    D    +     G   ++ KPF+   +   +    
Sbjct: 71  QVCQQLKDDEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIETEKK 127


>gi|298387534|ref|ZP_06997086.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259741|gb|EFI02613.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 1346

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R        +  + V    +  EA      E  P  ++ D  M  +  
Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIP-EYKPELVISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L 
Sbjct: 1127 DELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLL 1185


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +++V+    +  + R   +  G+ V          +     L P+ +++D  + G+    
Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRT-LRPSLVLLDVGLPGIDGLE 170

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R         V ++    D    + G + GA+ ++ KPF+   L   +  + + 
Sbjct: 171 VCRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRR 227


>gi|292487639|ref|YP_003530512.1| transcriptional regulatory protein kdpE [Erwinia amylovora
           CFBP1430]
 gi|292898875|ref|YP_003538244.1| kdp operon transcriptional regulator [Erwinia amylovora ATCC 49946]
 gi|291198723|emb|CBJ45832.1| kdp operon transcriptional regulator (two-component response
           regulator) [Erwinia amylovora ATCC 49946]
 gi|291553059|emb|CBA20104.1| Transcriptional regulatory protein kdpE [Erwinia amylovora
           CFBP1430]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R       F V +A ++            P  +++D  +    
Sbjct: 1   MTTILIVEDEKEIRRFLRVALEGEDFRVVDAETLKRGL-IEAATRKPQLVILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                + ++   + + V  L    D    I    AGA+ FL KPF    L   +R   + 
Sbjct: 60  G-CQFIHEIRQWSTMPVIVLSARSDESDKITALDAGADDFLTKPFGVGELLARVRVALRH 118

Query: 121 QKSKDEN 127
           +    EN
Sbjct: 119 RPQSSEN 125


>gi|253571881|ref|ZP_04849286.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251838478|gb|EES66564.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1346

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R        +  + V    +  EA      E  P  ++ D  M  +  
Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIP-EYKPELVISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L 
Sbjct: 1127 DELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLL 1185


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  E      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|209522750|ref|ZP_03271308.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
 gi|209496799|gb|EDZ97096.1| response regulator receiver modulated diguanylate cyclase
           [Arthrospira maxima CS-328]
          Length = 259

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD       V      D  + +  A S  +A       + P+ +++D  M  + 
Sbjct: 1   MFSILIVDDDPDNFDVVETCLIDENYHLHYAYSGQDALSVINV-IKPDLILLDVMMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++ M       +  +      E +     AGA+ F+ KP N   L   +R + 
Sbjct: 60  GIEVCRRIKAMGEWKGTPIIMVTALSSTESLAECLGAGADDFIAKPVNGLELLARIRSML 119

Query: 119 QMQKSKD 125
           ++++   
Sbjct: 120 RIKQQYQ 126


>gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
 gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
          Length = 239

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +  +    F+  G+ V+ AT+   A +  EK+  P+ +++D +M  +  
Sbjct: 18  QSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEKK--PDIILLDVNMPDIDG 75

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R         + +L   ++    I G   GA+ +++KPF+ + L   +    + +
Sbjct: 76  FTVCERIRD-YVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRRE 134

Query: 122 K 122
           K
Sbjct: 135 K 135


>gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
 gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +  ++V +  +  EA E C ++   +  ++D  +  +  F
Sbjct: 4   KILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALE-CIQKTEIDLAILDVMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  ++D    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  RICQKIRENYYF---PVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRR 119

Query: 121 QK 122
            +
Sbjct: 120 YQ 121


>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D  + + ++ +      GF V    +  EA     +E  P+ +++D  +  +  
Sbjct: 3   KKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREEN-PDLIILDLMLPEISG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    +    + G   GA+ ++ KPF  + L    +   +
Sbjct: 62  WDVCREIRKESR---VPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSE 121


>gi|29347144|ref|NP_810647.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339043|gb|AAO76841.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1346

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R        +  + V    +  EA      E  P  ++ D  M  +  
Sbjct: 1069 QRILIVEDNDELRNYLSQTLAEE-YTVQNCCNGKEALTIIP-EYKPELVISDIMMPEMRG 1126

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L 
Sbjct: 1127 DELCDAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYIVKPFNIGILKATVSNLL 1185


>gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
 gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
          Length = 237

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D    +RK         G+ V  A +  +  E    +   + L++D  +  +   
Sbjct: 10  SILIIDDEPQIRKFLDIALRAQGYAVHVAETGMKGLEILASQGA-DLLILDLGLPDMDG- 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +++M   + + V  L    D ++ I    AGAN ++ KPF+ + L   +R + + Q 
Sbjct: 68  AEVLKEMRQWSQIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQQP 127

Query: 123 SKDE 126
           S+ E
Sbjct: 128 SQSE 131


>gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  +         ++V  A       ++ E     + L++D  + G+ 
Sbjct: 1   MK-VLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEA-TAFDLLILDLGLPGMD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +RQ   G  + +  L         + G  AGA+ +++KPF+   L   +R L 
Sbjct: 59  GLSFCQTIRQR--GHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRK 119


>gi|332829570|gb|EGK02216.1| hypothetical protein HMPREF9455_01486 [Dysgonomonas gadei ATCC
            BAA-286]
          Length = 1300

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+    +R++ + + + + + + EA    EA    E+  +P+ ++ D  M  +   
Sbjct: 1048 SILIVEDEKNIRELLKDILSPY-YNISEAGDGEEAVSMIEQN-MPDIILSDVLMPNMDGM 1105

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  ++  P    + +  +  +   E  I   + GA+ ++ KPF+   +   ++ L   
Sbjct: 1106 GLIDKLKSDPKTAHIPIINVSAKSSVEDHINAYQHGADLYITKPFHPRHVLTTVQNLVNK 1165

Query: 121  QKSKDE--NQFLDAI 133
            +    +  N  L +I
Sbjct: 1166 RSVLKDFFNSSLSSI 1180


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +  +     N+ G+ V +     +A E+  K    +  ++D  M  +  
Sbjct: 3   TKILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYM-KNNRVDLALLDVMMPEISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+  +     V  L  +V+    I G   GA+ ++ KPFN   L   ++   +
Sbjct: 62  FEICRIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLR 118

Query: 120 MQKSKDENQ 128
             K  + +Q
Sbjct: 119 RYKKYNPSQ 127


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +  +       +      +  +  +    E   + +++D  +  + 
Sbjct: 22  MAKILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNEN-FDAILLDLMLPDLN 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++       +  +         ++G   GA+ +++KPF  E L   +R + + 
Sbjct: 81  GL-EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 139

Query: 121 QKSKDENQ 128
            K + E Q
Sbjct: 140 VKIEKEAQ 147


>gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1792

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1671 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDG 1730

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M++  +
Sbjct: 1731 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMQQWMR 1790


>gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 1800

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1679 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1738

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1739 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1798


>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F +    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|192361562|ref|YP_001984105.1| sensory box/GGDEF family protein [Cellvibrio japonicus Ueda107]
 gi|190687727|gb|ACE85405.1| hipothetical sensory box/GGDEF family protein [Cellvibrio japonicus
           Ueda107]
          Length = 688

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD +     +   +  D G  +  ATS   A E   +  LP+ +++D  M  +  F
Sbjct: 80  RILLVDDTPENLDILSAILEDLGCQLLVATSGERALELATR-RLPDLVLLDVMMPDMNGF 138

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     T++ + ++      E +  G + G   ++ KP N + +R  ++   + 
Sbjct: 139 EVCTRLKADLATTEIPIVFVTART--EDISQGFQVGGADYITKPINADEVRARVKYQLER 196

Query: 121 QKSKDE----NQFLDA 132
           Q    E    N+ L+A
Sbjct: 197 QGMLAELKSFNRELEA 212


>gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 223

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   KE   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDILYKE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERR 127


>gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 231

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +           G+ V +A +  +A +  E+E   + +++D  M  +   
Sbjct: 5   NILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEK-IHLVLMDVMMPELDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A V+      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  SATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRR 120


>gi|299139599|ref|ZP_07032773.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598527|gb|EFI54691.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 251

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    + +  R  F   G+ V  A          E +  P+ +V D +M  +  
Sbjct: 13  KKILVIDDEPSITRALRASFLANGYDVRTAHDGIAGLHVLE-DWGPDLVVTDLAMPDMDG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 VR       + +  L +  D E  I    AGA+ ++ KPF+ + L   +R  
Sbjct: 72  IEICRQVRSKSS---IPIILLSVRDDTESKIRALDAGADDYVTKPFSIDELLARVRTA 126


>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +       + G+           R+    +   + L++D ++ G+ 
Sbjct: 1   MKKILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMAL-QPGVDLLILDINLPGIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  L    + E  + G   GA+ +L+KPF+   L   +    + 
Sbjct: 60  GFEVCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRR 119

Query: 121 QKSKDEN 127
               +E 
Sbjct: 120 STLLEEM 126


>gi|228473133|ref|ZP_04057890.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275715|gb|EEK14492.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC
           33624]
          Length = 241

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +  GF V  A +  E  +   K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPY-DMCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F            V + +L      E +I G ++GA+ +L KPF+ E L   +R + Q +
Sbjct: 65  FTLAKEIREKNEKVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQRK 124


>gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda]
 gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str.
           Ikeda]
          Length = 489

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     RK+         + V+ A +  EA +  E  +  + +++D  M G+  F 
Sbjct: 5   ILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEA-IKIDVVLLDIVMPGMDGFE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  +    D E  + G   GA+ FL KP    +L   ++ L +M+
Sbjct: 64  LCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLVRMK 123



 Score = 46.3 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 38  REFCEKELLPNYLVID--ESMEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKM------ 89
            E     L+P+ L+I+    +E  L   A +R            L  E   E        
Sbjct: 212 LEKIATSLVPDLLIINNQIILEDPLRVYAILRSKDELKQSAFMLLT-EDSLENRDYDDIS 270

Query: 90  ----IAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129
               + G   G N F     +   L   ++   + ++ +D+ + 
Sbjct: 271 TDKLLKGLEMGINDFFPYSIDNNELLARIKTQLRRKQYQDQLKQ 314


>gi|73670561|ref|YP_306576.1| response regulator receiver [Methanosarcina barkeri str. Fusaro]
 gi|72397723|gb|AAZ71996.1| response regulator receiver [Methanosarcina barkeri str. Fusaro]
          Length = 285

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD      ++     +   + +  A+S  EA +  ++E L + +++D  M   G  
Sbjct: 9   KVLIVDDVLENIELIEAYLSVEPYNLITASSGKEAIQKLKEEKL-DMILLDVMMPEVGGY 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    V+  P    + V  L    + E  I G  AGA+ FL KP NR  L+  ++ L ++
Sbjct: 68  EVCRIVKNNPETQFIPVLMLTALSEIEDRITGIEAGADDFLTKPINRLELKTRVKSLLRI 127

Query: 121 Q 121
           +
Sbjct: 128 K 128


>gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
 gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
          Length = 238

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +RK+        G++V EA++  +  E  +     + +++D  +  +   
Sbjct: 4   RILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDY-SCVLLDVQLPMLNGK 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R+        V  +  + D +  + G   GA+ +++KPF+   L   +  + Q 
Sbjct: 63  SILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQR 119

Query: 121 QK 122
            K
Sbjct: 120 TK 121


>gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
 gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + +         G+ V    +  EA          + +V+D  +  + 
Sbjct: 1   MTTVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVRG---VDLVVLDLGLPDMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  V +  L    D   M+ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 58  GLDVAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117

Query: 121 QKSKDENQFLDA 132
           Q ++     L A
Sbjct: 118 QAAEPAEGELRA 129


>gi|289422314|ref|ZP_06424164.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289157259|gb|EFD05874.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 237

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++LLV+    +         + G+ V +A++  E  E  EK  + +  ++D  M  
Sbjct: 1   MKVYTVLLVEDEKDIADAVEVYLRNQGYEVIKASNGQEGLEMIEKNEV-HLAIVDLMMPV 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGTTMIMKLREKY-DFPVIILSAKSEEVDKIMGLNIGADDYVNKPFKPLELLARVNSQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
 gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      +  + + +A    +A E  +     + +++D  M  + 
Sbjct: 11  MK-ILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLD 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                         + +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 70  GISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRR 129

Query: 121 QKSKDE 126
                E
Sbjct: 130 STITQE 135


>gi|261409329|ref|YP_003245570.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285792|gb|ACX67763.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 1219

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +   +   V  A +  EA E  ++    + +++D  M  +  
Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+MP    + +  L  +   E       AGA+ ++ KP   E L   MR   
Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217



 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            M  LL+V+   I R     L       +  A++  EA     K+   + +V+D  +  + 
Sbjct: 952  MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRY-DCMVLDLMLTDMT 1010

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
              E +  +R      D+ +     +    K     R  A S ++K   + E L  
Sbjct: 1011 GFELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++      ++   +    GF    A       E   K   P+ +++D  +  +  
Sbjct: 831 KVLLIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMA-KSYRPDAIILDIQLPVIDG 889

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
              +  ++   +   + V+ + +    +++  G   GA ++L KP +RE L  A
Sbjct: 890 WSVMGELKSSAVTRHIPVHVISV---VDEVKQGLMMGAIAYLKKPSSREALEDA 940


>gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
 gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +      +  G+ V +A    EA +   KE   + LVID  M  + 
Sbjct: 3   MSKILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEK-IDLLVIDVMMPKLD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 62  GIRATLKIREAN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 120


>gi|153871117|ref|ZP_02000368.1| two-component response regulator [Beggiatoa sp. PS]
 gi|152072416|gb|EDN69631.1| two-component response regulator [Beggiatoa sp. PS]
          Length = 295

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 4/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD +   RK+ R      G+   EA +   A E   KE LP  +++D  M  + 
Sbjct: 1   MSKVLIVDDNLKTRKMLRRHLLKNGYETLEAENGHVALESV-KENLPEVVLLDVMMPDMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +RQ P    V++  L      E+ + G   GA+ ++ KPF+   L   +R + 
Sbjct: 60  GIEVCQKLRQTPHYELVYIIMLTALTSSEQKVEGLDQGADDYITKPFDVYELMAHIR-VG 118

Query: 119 QMQKSKDENQFLDAI 133
           +    K     +D +
Sbjct: 119 ERTVIKKREATIDGL 133


>gi|17549417|ref|NP_522757.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431670|emb|CAD18347.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 245

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLSQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         DV V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122

Query: 122 KS 123
           ++
Sbjct: 123 QA 124


>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + K+ ++      +    A S  EA      +   + +++D  + G+  F 
Sbjct: 6   ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLL-ADRAVDLVLLDVMLPGIDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  L  ++ +  L  + +    + G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRD 124

Query: 122 KSKDENQF 129
           +   ++  
Sbjct: 125 RRGKQDVR 132


>gi|322417782|ref|YP_004197005.1| response regulator receiver protein [Geobacter sp. M18]
 gi|320124169|gb|ADW11729.1| response regulator receiver protein [Geobacter sp. M18]
          Length = 121

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L VD    +      +    G+ V  A    EA E  E+ + P+ +++D +M G  
Sbjct: 1   MKTILAVDDEPNILMSIEFILQMEGYQVHTARDGDEALEVAER-VRPDLILLDVNMPGKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+        V  L  +    +   G   GA+ ++ KPF  E L  A+R   
Sbjct: 60  GYEVCRILRERRDLAATKVILLTAKGQALERKKGIEMGADDYVTKPFATEELLGAVRAQL 119

Query: 119 Q 119
           +
Sbjct: 120 E 120


>gi|288941878|ref|YP_003444118.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
 gi|288897250|gb|ADC63086.1| response regulator receiver modulated diguanylate cyclase
           [Allochromatium vinosum DSM 180]
          Length = 303

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD           L     + +  AT   +A E   +   P+ +++D  M  +   
Sbjct: 8   TILIVDDQPANIHALAALLKK-DYRILTATRGEKALELAARTPPPDLILLDIVMPDMDGH 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + + ++    +      G   GA  ++ KPF+   +R  +R    +
Sbjct: 67  EVCCRLKNDEATKAIPIIFVTALGEERDEEHGLNLGAADYISKPFSPAIVRARVRNQIHL 126

Query: 121 QKSKDENQFLD 131
           +   D  + + 
Sbjct: 127 KLRTDRLEQVA 137


>gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 269

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+   +A S  EA            +++D  M  + 
Sbjct: 42  MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  +  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 101 GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 159

Query: 121 QKSKDEN 127
            +++  N
Sbjct: 160 SQNEVTN 166


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A     A     K    +  ++D  M     +
Sbjct: 11  RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKY-DLFILDLMMPKIDGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T+V +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 70  EVCRKLREK---TNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126


>gi|258404681|ref|YP_003197423.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
 gi|257796908|gb|ACV67845.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
          Length = 452

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R     +  D G  V EA S              + + +D  + G+
Sbjct: 1   MQARILVVDDELDIRVSLSGILEDEGHTVMEADSGEAGLTAM-AGKEIDLVFLDIWLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R      D+ V  +      E  ++  + GA+ F+ KP + E +     +  +
Sbjct: 60  DGLAVLERLRQEWPDIPVIMISGHGTIETAVSAIKNGAHDFIEKPLSLEKVVITANKALE 119

Query: 120 MQKSKDENQFLDA 132
             K K EN+ L +
Sbjct: 120 FSKLKRENRDLRS 132


>gi|221200233|ref|ZP_03573275.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2M]
 gi|221205914|ref|ZP_03578928.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2]
 gi|221209274|ref|ZP_03582255.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD1]
 gi|221169962|gb|EEE02428.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD1]
 gi|221173926|gb|EEE06359.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2]
 gi|221179574|gb|EEE11979.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans CGD2M]
          Length = 246

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E       +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGRE-MRSVLDDGAPDLIVLDLMLPGEDGLA 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|254412501|ref|ZP_05026275.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180811|gb|EDX75801.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 650

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    LL+VD +    +V     ++ G+ V        A     K   P+ +++D  M  
Sbjct: 1   MTKGNLLIVDDTPENLQVLSATLSEQGYQVRGVVKGKMAI-RAAKSAQPDLILLDIRMPE 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        ++  P   D+ + ++    D    +   R G   ++ KPF  E +   +  
Sbjct: 60  MDGYQVCETLKADPETRDIPIIFISAIDDVLDKVKAFRVGGVDYITKPFQVEEVLARVEH 119

Query: 117 LPQMQKSKDENQ 128
              +++   E +
Sbjct: 120 QLTIRRLSQEVR 131



 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +   R +   L    GF V EA +  E     E    P+ + +D  M  +   
Sbjct: 425 RILVVDDTPENRLLLTKLLEPIGFEVREAANGMECLPLWET-WQPHLIFMDTRMPMMDGL 483

Query: 63  --IAHVRQMPL-----------GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
                ++                +   +  L      E+      AG+  F+ KPF  E 
Sbjct: 484 EATRRLKSKEKERLSQSNSVLDLSRTIIIALTASAFEERREEILAAGSEDFVRKPFTEEQ 543

Query: 110 LRFAMRELPQMQKSKDE 126
           +   +     ++   +E
Sbjct: 544 IFDTIAHHLGVRYRYEE 560


>gi|297582881|ref|YP_003698661.1| putative two component sigma54 specific transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141338|gb|ADH98095.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [Bacillus selenitireducens MLS10]
          Length = 419

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ D    +R++        GF VF A    EA    +KE   +  + D  ME + 
Sbjct: 1   MERILVADDEQDLRELLVSRLKRKGFEVFGAADGEEALALLQKERY-DLGIFDIRMEPMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  V+  P   ++ V  L      E  I   + GA  +L KP+N   L   + +  
Sbjct: 60  GLTLLEEVKSRPDTLEMEVVMLTGHGTMETAIEAMKRGAYDYLTKPYNLSELEVVISKAL 119

Query: 119 QMQKSKDENQFLDAI 133
           + +K  ++NQ +  +
Sbjct: 120 EKKKLTEDNQTMRNL 134


>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
          Length = 223

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHSSSEII 128


>gi|329928581|ref|ZP_08282448.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328937697|gb|EGG34106.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 1219

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +   +   V  A +  EA E  ++    + +++D  M  +  
Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQQNPDFDLVLMDMMMPEMDG 1158

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+MP    + +  L  +   E       AGA+ ++ KP   E L   MR   
Sbjct: 1159 YEAMRRLREMPEFDKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217



 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            M  LL+V+   I R     L       +  A++  EA     K+   + +V+D  +  + 
Sbjct: 952  MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRY-DCMVLDLMLTDMT 1010

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
              E +  +R      D+ +     +    K     R  A S ++K   + E L  
Sbjct: 1011 GFELLDQIRDDENLVDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++      ++   +    GF    A       E   K   P+ +++D  +  +  
Sbjct: 831 KVLLIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMA-KSYRPDAIILDIQLPVIDG 889

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
              +  ++   +   + V+ + +    +++  G   GA ++L KP +RE L  A
Sbjct: 890 WSVMGELKSSAVTRHIPVHVISV---VDEVKQGLMMGAIAYLKKPSSREALEDA 940


>gi|317402238|gb|EFV82826.1| osmolarity two component response regulator [Achromobacter
           xylosoxidans C54]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++     N  G+    A    +          P+ LV+D  + G   
Sbjct: 6   TKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASD-LPSRITRYAPDLLVLDRMLPGGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    G D+ V  L    +    I G  AGA+ ++ KPF+   L   +  + + +
Sbjct: 65  ADACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 124

Query: 122 K 122
           +
Sbjct: 125 R 125


>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
           519]
 gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+VD   ++ K  +      G ++  +    +A E  + +   + +++D  +    
Sbjct: 1   MANILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDY-DIILLDLMLPIID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    VR+    +DV +  L  + +    I G   GA+ ++ KPFN   L+  +  + 
Sbjct: 60  GFEVCKKVRE---TSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAIL 116

Query: 119 QMQKSKDE 126
           +  +   +
Sbjct: 117 RRMEKSKK 124


>gi|254720504|ref|ZP_05182315.1| Probable transcriptional regulator ycf27 [Brucella sp. 83/13]
 gi|265985535|ref|ZP_06098270.1| two-component system response regulator [Brucella sp. 83/13]
 gi|306838128|ref|ZP_07470985.1| transcriptional regulator ycf27 [Brucella sp. NF 2653]
 gi|264664127|gb|EEZ34388.1| two-component system response regulator [Brucella sp. 83/13]
 gi|306406865|gb|EFM63087.1| transcriptional regulator ycf27 [Brucella sp. NF 2653]
          Length = 238

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 1   MD---SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD    +R +        G  V  A +  E  +   +    + +++D  + 
Sbjct: 1   MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTP-IDLVILDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   +E    VR     + V +  L    D    I G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGIEICQDVR---RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIR 116

Query: 116 ELPQM-QKSKDENQFLDAI 133
            + +  + ++   + L  I
Sbjct: 117 AVLRRFEGNRGPQRALTQI 135


>gi|251778066|ref|ZP_04820986.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082381|gb|EES48271.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+V+    +        N+ G+ VF+A +  E  +    E   +  ++D  M  
Sbjct: 1   MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNET-IHLAIVDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++      D  V  L  + +    I G   GA+ ++ KPFN   L   +    
Sbjct: 60  MDGIQMTMKLRSKF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|189468055|ref|ZP_03016840.1| hypothetical protein BACINT_04449 [Bacteroides intestinalis DSM
            17393]
 gi|189436319|gb|EDV05304.1| hypothetical protein BACINT_04449 [Bacteroides intestinalis DSM
            17393]
          Length = 1481

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F    + + EA    +      K  LP+ ++ D  M        
Sbjct: 1222 LLVEDNSELRLFLRSIFASE-YRIVEAVDGMQGWSKALK-FLPDIIISDVMMPEKDGIAM 1279

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
               +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  ++ L  Q Q
Sbjct: 1280 TRELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVKNLLTQRQ 1339

Query: 122  KSK 124
            K +
Sbjct: 1340 KLQ 1342


>gi|120435017|ref|YP_860703.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577167|emb|CAL65636.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLAMNDYEVTHAKNGMEGFEKFKKDD-FDLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           ++ + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNEEIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124


>gi|121593474|ref|YP_985370.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120605554|gb|ABM41294.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 242

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  V        G+    A     A +       P+  ++D  + G+   
Sbjct: 6   RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              +RQ    TD  +  +   V+    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 66  -EVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVL 120


>gi|78061250|ref|YP_371158.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969135|gb|ABB10514.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 246

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   + +  P+ +V+D  M G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLD-DGAPDLIVLDLMMPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           LV+    ++ +        G+      +  +  +  E    P+  ++D  + G+    F 
Sbjct: 7   LVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNP-PDMWILDIMLPGMDGYEFC 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R     +DV +  +  + +    I G   G + +L KPF+   L   ++ L +   S
Sbjct: 66  KKIRNE---SDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRSTS 122

Query: 124 KDENQ 128
             +++
Sbjct: 123 HRQDE 127


>gi|325928438|ref|ZP_08189629.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325541155|gb|EGD12706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 278

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 47  VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 105

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 106 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 165

Query: 124 KDEN 127
            +E 
Sbjct: 166 SNEQ 169


>gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F++KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 SRGRETEQIE 131


>gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 510

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    D GF    A    EA E  E+E     +++D  M  +   
Sbjct: 5   KILIVDDEADIALILKLQLEDAGFETERARDGVEALEAVERE-QFTLIMLDIKMPRMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      +  V  +      +  +   + GA  ++ KPF+ + +   +    ++ +
Sbjct: 64  EVLSRIRSD--ETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSSDDMLQKVERAIKIDR 121

Query: 123 SKDENQFLD 131
           ++ EN  L 
Sbjct: 122 TRKENARLQ 130


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF VF A S  EA     +E+ P+  ++D  M G+  F
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEAL-RVAREVNPDAYIMDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G D  V YL  +   ++ I G   GA+ ++ KPF+ E +   +R + + 
Sbjct: 67  ELLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124


>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + ++        G+ V  A    +  E  +     + +++D  M  +  F 
Sbjct: 13  ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGC-FHAVILDVMMPKMDGF- 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             ++Q+   +D+ V  L    +    I G   GA+ +L K F+   L   +R + +  + 
Sbjct: 71  EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130


>gi|220910098|ref|YP_002485409.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219866709|gb|ACL47048.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 125

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+ S   + +   L    G     A +   A ++      P+ +++D  M G  
Sbjct: 1   MKTVLVVEDSRTEQHLIISLLEKSGLQAVLAETAESALDWLAHNAPPDLILMDIVMPGAN 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VR  P   D+ + +   +          R G N+++ KPF    L   + E  
Sbjct: 61  GLELCREVRAQPQFKDIPIIFCSSKDQEFDRFWALRQGGNAYITKPFEPNELIQTVCEYL 120


>gi|220906814|ref|YP_002482125.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
 gi|219863425|gb|ACL43764.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7425]
          Length = 373

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   +   V   L +     +  A    +A  F E +L P+ +++D  + GV 
Sbjct: 1   MAVILIVDDEPVNFDVIETLLSGDNHQLHYAADSVDAFGFLE-QLQPDLILLDVMLPGVN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P    + +  +    + E +    +AGA+ F+ KP +   LR  ++ + 
Sbjct: 60  GINMCQIIKANPEWQSIPIIMITALSEKEDLARCLKAGADDFISKPVHSLELRARVKSML 119

Query: 119 QMQKSKDENQFLDAI 133
           ++++     Q    +
Sbjct: 120 RIKRQYGRLQQFSEL 134


>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
 gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
          Length = 231

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +         + G+ +F+A S  EA E    E   + +++D  M  +   
Sbjct: 2   NILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIV-SENTIHLILMDIMMPEMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ + +L  + +    I G   G + ++ KPFN   +   ++   + 
Sbjct: 61  HATLKIRE-TANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRR 117


>gi|298504480|gb|ADI83203.1| sigma-54-dependent transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 455

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD     R++ + +     +    A    EA    + E   + ++ D  M+G+   
Sbjct: 4   TILIVDDERGQREILQTILEGERYETTTAAGGQEALALLD-EREFDVILTDLKMQGMSGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +       +  +      +  +   + GA  +L KP  R+TL   +R   +  +
Sbjct: 63  ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 122

Query: 123 SKDENQFL 130
              EN+ L
Sbjct: 123 LLKENRAL 130


>gi|271501297|ref|YP_003334322.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344852|gb|ACZ77617.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 224

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 2/129 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +    +    + GF V        A +   ++     +V+D S+  +   
Sbjct: 2   RLLLVEDHPELAHWLKKALGEAGFAVDLVGDGVAA-DHLLQQEAYTLVVLDVSLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G ++ V  L         + G   GA+ +L KPF    L   +R L +  +
Sbjct: 61  ALLARLRKRGQNLPVLLLTARASVADRVKGLNLGADDYLTKPFELAELEARLRALLRRSQ 120

Query: 123 SKDEN-QFL 130
            + ++ Q L
Sbjct: 121 GQVQDVQRL 129


>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 1   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GLEVCKAIRK--ENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 117

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 118 RRIEVHEE 125


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + +      +  G+ V  A     A     +EL  + +++D  + G+ 
Sbjct: 1   MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAA-RELDIDLVILDWMLPGLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEK--MIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 R    G  V V  L  + +      +AG  AGA+ +++KPF+ E L   +R   
Sbjct: 60  GLEICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHL 119

Query: 119 QMQKSKDENQFLD 131
           +  +  D    L 
Sbjct: 120 RRNQDADAGDILQ 132


>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A +  EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  V+++   + + +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  G-IEVVKEVRKDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSK 124
            + +
Sbjct: 119 SQDQ 122


>gi|39995705|ref|NP_951656.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982469|gb|AAR33929.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504717|gb|ADI83440.1| sigma-54-dependent transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   I+R+  R +    G+ V  + S   A E  + E     ++ D  M G+  +E
Sbjct: 6   VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDENY-GLVITDLKMPGMSGME 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++ +    +V V  +      +  +   + GA  ++ KPF  + +   +R+  + +
Sbjct: 65  VLKAIKVLQ--PEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQITEKVRKALEQR 122

Query: 122 KSKDENQFLD 131
               EN FL 
Sbjct: 123 AVLLENIFLK 132


>gi|114319830|ref|YP_741513.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226224|gb|ABI56023.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 123

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +      L    G+ V  AT   EA E  E+   P+ +++D  M     
Sbjct: 3   KRILIVDDEANIVLSLEFLMKQAGYEVETATDGDEALEAIERAK-PDLVLLDVMMPRKNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            E    +R      D+ V  L  +    +   G   GA+ ++ KPF+ + +   +REL 
Sbjct: 62  YEVCETIRASDDWKDILVVMLTAKGRDVEREKGLSLGADDYITKPFSTQEVIDKVRELL 120


>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A     A +    +L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAA-SQLRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130

Query: 122 KSKD------ENQFL 130
           +         EN+ L
Sbjct: 131 ERAKVIAKNSENEKL 145


>gi|323484284|ref|ZP_08089652.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum
           WAL-14163]
 gi|323402436|gb|EGA94766.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum
           WAL-14163]
          Length = 209

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    V+ +         +    A++   A         P+ +++D  +  
Sbjct: 20  MNKPLILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHN-PDVILLDLGLPD 78

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +R++   +   +  L    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 79  MDG-IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTF 137

Query: 119 QM 120
           + 
Sbjct: 138 RR 139


>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L D    + +       + G+ V  A +  +A +   +E  P+  V+D  M  +  F
Sbjct: 8   KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLA-REFRPHVAVLDVMMPEMNGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                      ++ V  L  + D +  + G + GA+ +++KPF+   L   +    + Q
Sbjct: 67  EVCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLRNQ 125


>gi|270293867|ref|ZP_06200069.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275334|gb|EFA21194.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA          + L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM--DIGSYSLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      + + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKS 123
            + 
Sbjct: 123 TRQ 125


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 14  KNILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMI-STYEVDLMILDIMMPKRNG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 73  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 129

Query: 120 M 120
            
Sbjct: 130 R 130


>gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
 gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +  +A         P+ +++D  +  
Sbjct: 1   MNKPLILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQAL-LESVSQKPDIMLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  ++++   +++ +  +    +    I    AGA+ +L KPF+ + L   +R   
Sbjct: 60  MDG-IEIIKKVRSWSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 226

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R V +       F V    +  +A  + +++   + +++D  +  +  F
Sbjct: 2   RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQH-FDLIILDVMLPEIDGF 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   +  +V V +L  +      I+G + GA+ +L KPF  E L   +  L + 
Sbjct: 61  QICEQIRLTDM--EVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKR 118

Query: 121 QKSKDEN 127
                EN
Sbjct: 119 TSKSPEN 125


>gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           fusiformis ZC1]
          Length = 235

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 44/127 (34%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +       +    A     A +     + P+  ++D  +  +  
Sbjct: 3   KRILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALT-IKPDVFILDLGLPDIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               + ++       +  +    +    I    AGA+ ++ KPF+ E L   +R   +  
Sbjct: 62  V-ELITKIRSWNQTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVALRRM 120

Query: 122 KSKDENQ 128
             +   +
Sbjct: 121 AYEQPLE 127


>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  E  +   ++ + +  ++D  + G+ 
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTV-DIALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GLEVCKAIRK--ENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|163735689|ref|ZP_02143120.1| DNA-binding response regulator [Roseobacter litoralis Och 149]
 gi|161391117|gb|EDQ15455.1| DNA-binding response regulator [Roseobacter litoralis Och 149]
          Length = 243

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R          G     A S  +  +   K+   + +V+D  M G    
Sbjct: 7   RILVVDDHAEIRHSVTRYLKINGMRATGAKSAAD-MDAQLKDYTFDLIVLDIMMPGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R       + +  L    + +  I G   GA+ +L KPFN   L   +  + + 
Sbjct: 66  AACARLRRQHQSIPILMLTALGEDDDRIKGLDTGADDYLAKPFNPGELLARINAILRR 123


>gi|197117408|ref|YP_002137835.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197086768|gb|ACH38039.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 441

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D       +   L  ++ + ++ A               P+ +++D  M G+  F 
Sbjct: 15  ILVIDDDANNLAIVSSLLQEYSYTIYVAEDGESGIRRALL-TRPDLILLDVLMPGIDGFE 73

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++ +    D+ V ++    + ++ + G  AGA  +++KP  RE +   +     ++
Sbjct: 74  TCQRLKAVEATRDIPVIFMTALAEMDQKVRGFDAGAVDYIIKPLQREEVLARVGVHIHLR 133

Query: 122 KSKDENQFLDA 132
               E Q  +A
Sbjct: 134 HLAKELQETNA 144


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            L++V+    +R++        G+ V    S  +A E  + E  P  +++D  +  +  +
Sbjct: 6   KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNEN-PELVILDIMLPDMDGY 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   L  DV +  L      +  +AG  AGA+ +L KPF+ E L   ++ L + + 
Sbjct: 65  EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124


>gi|87312161|ref|ZP_01094265.1| two-component response regulator [Blastopirellula marina DSM 3645]
 gi|87285135|gb|EAQ77065.1| two-component response regulator [Blastopirellula marina DSM 3645]
          Length = 269

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVL 60
             +L+V+    +    R+     GF V        A E  +K     + +++D  + G+ 
Sbjct: 12  TRILVVEDEAHLAIGIRYNLEAEGFDVTVVEDGRSALEVVDKNPRQIDIVILDLMLPGMS 71

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G D+ +  L      E    G   GA+ +++KPF+ +     ++ L 
Sbjct: 72  GYAVCETLRAN--GEDMPILILSARTLPEDRKRGFDVGADQYMMKPFDLDEFISRVKNLL 129

Query: 119 QMQKSKDENQFLD 131
             +  +D+ +  +
Sbjct: 130 AARNRRDQARQRE 142


>gi|256420288|ref|YP_003120941.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035196|gb|ACU58740.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 234

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    V  V +    + G+ V  +T    A E  +     +  ++D  M   
Sbjct: 1   MKARILLVEDDQNVGAVTKKRLEEAGYDVVHSTDGQMAWEQFQS-RTFDICLLDVVMPKK 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    +       + + +L  +   E  I G + GA+ ++ KPF+ + L   +    +
Sbjct: 60  DGFTLAEQIRRKNDFIPILFLTSKALDEDKIKGFKTGADDYITKPFSMQELLLRIEVFLK 119

Query: 120 MQKS 123
             K+
Sbjct: 120 RSKA 123


>gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
           15053]
 gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
           15053]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    VR +         +    + +  +A         P+ +++D  +  +    
Sbjct: 9   VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAV-MSAASGNPDIILMDLGLPDMDGV- 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             ++++   +   +  +    D +  +    AGA+ +L KPF+ E L   +R   +  + 
Sbjct: 67  DVIKKIRTWSVAPIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRRIQY 126

Query: 124 KDE 126
             +
Sbjct: 127 LTQ 129


>gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
 gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
           27560]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +  + +  F    + +  A S  EA +       P+ +++D +M G+   
Sbjct: 6   KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKVA--CKPDLILLDINMPGMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        + +L   ++    I G +AGA+ +++KPF+ + L   +    + 
Sbjct: 63  TVCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119

Query: 121 QKSKDEN 127
           ++ +  N
Sbjct: 120 EQRRQNN 126


>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
 gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
          Length = 245

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57
             LL+V+    +R+  R      G+ V    +  EA      +       + +V+D  + 
Sbjct: 13  KRLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               +E    VR+        +  +  +      + G   GA+ +L+KPF    L    R
Sbjct: 73  NLNGIELCRRVRKN--NIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCR 130

Query: 116 ELPQMQK-SKDENQFLDAI 133
            + +  + + ++ Q L  +
Sbjct: 131 AILRRSETNHEKTQDLSQV 149


>gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126]
 gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126]
          Length = 232

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI+ V    +  +    +   +   +  I G   GA+ F++KPF+   L   +  + +
Sbjct: 62  YDFISEV--QYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILR 119

Query: 120 MQKSKDENQFLD 131
                 E + ++
Sbjct: 120 RLSRGGETEQIE 131


>gi|153003972|ref|YP_001378297.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027545|gb|ABS25313.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. Fw109-5]
          Length = 475

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R+  R +    G+ V EA S  +A +  E E + +  + D  + G+   
Sbjct: 7   TVLVVDDERNIRRTLRMVLEAEGYAVSEAESAEDALKILEGEPV-DLGIFDIRLPGMDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L  D+ V  +    D   ++   + GA  F  KP +R+ +  ++R     + 
Sbjct: 66  ALLSRARELWRDLPVVVISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALARRS 125

Query: 123 SKDENQFLDA 132
            +++ Q L A
Sbjct: 126 LEEKVQVLAA 135


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +V +      G+ V    +  E  +   +    + +++D  + G+    
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGY-SLVLLDVMLPGLSGLE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R     +   V  L         + G   GAN ++ KPF  E L   +R   +   +
Sbjct: 65  VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124

Query: 124 KDEN 127
           K E+
Sbjct: 125 KTED 128


>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             + +V+    +  +  +     G+                ++  P+ +++D  +     
Sbjct: 3   KKIAIVEDEAELASLIEYNLTRHGYETQILGGG-TGTMRALEQAKPDLILLDVMLPDADG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     +   V +L    D    + G   G + ++ KPF+   L   ++   +
Sbjct: 62  FELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLR 121

Query: 120 MQKSKDE 126
            ++   E
Sbjct: 122 REEMDAE 128


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + ++  +     GF V          E   +    + +++D  + G+  
Sbjct: 16  QRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEY-DLILLDVMLPGMNG 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    +    G    +  L  +   E+++ G + GA+ ++ KPF    L   +  + + 
Sbjct: 75  FQILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 133


>gi|329890416|ref|ZP_08268759.1| mutant NtrC-like activator [Brevundimonas diminuta ATCC 11568]
 gi|328845717|gb|EGF95281.1| mutant NtrC-like activator [Brevundimonas diminuta ATCC 11568]
          Length = 489

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD     R++ + + +  G+ V  A S  EA +   K    + +++D  M G+  
Sbjct: 3   KTVLVVDDDPTQRRLIQAVLDREGYAVVHAESGGEAIDRLTKGGGADVVLLDLVMPGLSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G    V  L      E ++   +AGA  F +KP   + L   +R   QM 
Sbjct: 63  MEALAEMRTAGVATPVIVLTANGGIETVVKAMQAGAQDFFVKPVGPDRLLVGVRNALQMT 122

Query: 122 KSKDENQFLD 131
           +   E   L 
Sbjct: 123 QLTAEIGRLK 132


>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 236

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +V+    ++++      + G+ V    S       C + + P+  ++D  + G+  
Sbjct: 4   KLIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSEC-QNMKPDLFLLDIMLPGIDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++      + +  L  + D    + G   GA  ++ KPF+   L   ++ + +
Sbjct: 63  LEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFR 122

Query: 120 MQ 121
            Q
Sbjct: 123 RQ 124


>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA     A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|196230258|ref|ZP_03129121.1| response regulator receiver protein [Chthoniobacter flavus
           Ellin428]
 gi|196225855|gb|EDY20362.1| response regulator receiver protein [Chthoniobacter flavus
           Ellin428]
          Length = 204

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+ +  ++ R +      ++GF V  A     A E  E    P+  ++D  M  +  
Sbjct: 7   NRILVAEDHYVSRHLLERNLQNWGFEVISAQDGAAAAEILEGPEAPSIAILDWMMPRMDG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
                 +R+      +++  L  +   +++  G  AGA+ +++KPF+ + LR  ++    
Sbjct: 67  VEVCQRIRKNHKNPYIYLLMLTAKSQKDEIATGLDAGADDYVIKPFDPDELRARLKVGQR 126

Query: 117 LPQMQK-SKDENQFLDA 132
           + ++++  +   + L+A
Sbjct: 127 VVELERTLEKRVKDLEA 143


>gi|307152914|ref|YP_003888298.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306983142|gb|ADN15023.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 484

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      KV R +    G+ +  ATS  +  E  E+ + P  +++D  M  +    
Sbjct: 12  ILVVDDVPSNLKVLRGILEPIGYELTFATSGKQTLERVER-VRPALILLDLMMPDMDGLQ 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +   P+  D+ + +L    + E +      GA  ++ KPFN+  L   ++   Q++
Sbjct: 71  VCQALYSNPMYQDIPIIFLTASQEEEHLTYAFEQGAVDYINKPFNKAELLARIKTHLQLK 130

Query: 122 KSKD 125
              D
Sbjct: 131 HYSD 134


>gi|189468545|ref|ZP_03017330.1| hypothetical protein BACINT_04948 [Bacteroides intestinalis DSM
            17393]
 gi|189436809|gb|EDV05794.1| hypothetical protein BACINT_04948 [Bacteroides intestinalis DSM
            17393]
          Length = 1346

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 2    DSLLL-VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
             ++LL  +    +R+      +   + V       +A +   +E+ P+ ++ D  M    
Sbjct: 1101 KNILLLAEDDKDMREYLTDSLSSE-YKVISVPDGGKALDMA-REINPDIIISDIIMPVIQ 1158

Query: 59   VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              E    ++     + + V  L    + E +I G  +GAN +++KPF+   L+  +R + 
Sbjct: 1159 GDELCRILKSSVETSHIPVILLTALCERENIILGLESGANDYIIKPFDLSVLKVRLRNIL 1218

Query: 119  Q-MQKSKD 125
            Q  Q  +D
Sbjct: 1219 QNRQHLRD 1226


>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 228

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +LL++    +R +        GF V EA +  +       E   + +V+D  +  +  
Sbjct: 3   NRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESC-DIVVLDIMLPDING 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ+ +   + V  L    D    I G   GA+ ++ KP N   L   +  L + 
Sbjct: 62  L-DVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRR 119


>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  +      D G  V       +     E+    + LV+D  + GV  
Sbjct: 5   RRVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGW-DALVLDIMLPGVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   +     +  +       + I G   GA+ +L KPF+   L   ++ L +  
Sbjct: 64  LEICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRV 123

Query: 122 KSKDENQFLDA 132
           ++  +N  L++
Sbjct: 124 EALAQNARLES 134


>gi|322421476|ref|YP_004200699.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Geobacter sp. M18]
 gi|320127863|gb|ADW15423.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Geobacter sp. M18]
          Length = 534

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L VD   +   +   +    GF V  A++  EA    ++  + + +++D  M  +  F
Sbjct: 7   RILCVDDEPMNLTLLEAMLLLRGFEVVTASNGLEALGEIQRGRV-DIVLLDVMMPEMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V  +      E  I G  AGA  F+ KPF+   +   +  L ++
Sbjct: 66  EVCRRIKAEERYRNIPVVMITAYAARENRIMGIEAGAEDFISKPFDSAEVLARIGMLLKV 125

Query: 121 QKSKDEN 127
           +   D+ 
Sbjct: 126 KALNDQL 132


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+          ++    GF V  A +  +A +  ++    + +++D  + G  
Sbjct: 1   MTRVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGA-DIVLLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      +V V  +  +      + G   GA+ ++ KP++   L   ++ + 
Sbjct: 60  GTEVCRALRTRG---NVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|182680446|ref|YP_001834592.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636329|gb|ACB97103.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 273

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      D G+ V  A +  EA     +    + +V+D  M G    +
Sbjct: 48  LLIVDDDRRIRALLARFLADQGYRVTTAGNAEEA-TASLRNFAFDLIVLDAMMPGENGFD 106

Query: 62  FIAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +  +R  P     V V  L    + E  + G  AG++ +L KP+    L   +  + + 
Sbjct: 107 LLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILRR 166

Query: 121 QKSKD 125
            + + 
Sbjct: 167 AQPRA 171


>gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 250

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+V+    +R+  +     +G+ V  A    +  E        + L++D  +     +
Sbjct: 20  SVLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAH-DLLILDVMLPELDGI 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V  +    D   ++AG  AGA+ +++KP +   +   +R L + 
Sbjct: 79  GLCRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRR 135


>gi|71065720|ref|YP_264447.1| putative two component system regulatory protein [Psychrobacter
           arcticus 273-4]
 gi|71038705|gb|AAZ19013.1| putative two component system regulatory protein [Psychrobacter
           arcticus 273-4]
          Length = 233

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +  +       F   GF +  A +              + +++D  + G+ 
Sbjct: 6   MYKILLIEDNPDIVANIYAFFEPKGFELDNAHNGLSGLALA-ANNRYDVILLDVMLPGMD 64

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  L     V  L         +AG  +GA+ +L+KPF+   L   ++ L 
Sbjct: 65  GTKLCKMLRE-ELHDKTPVLMLTARDTILDKVAGFDSGADDYLVKPFSLVELEARIKALI 123

Query: 119 QMQK 122
           +  +
Sbjct: 124 RRHQ 127


>gi|29348581|ref|NP_812084.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340486|gb|AAO78278.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1310

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L+VD +  +    +    +    V  A    EA +  +   +P+ +V D  M  +   
Sbjct: 1058 TILVVDDNPDMTDFLKKTLEESFKRVIIAADGVEALQLIKSH-IPDIIVSDVMMPRMNGY 1116

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D + +I+G + GA+++L KPF  E L   +    + 
Sbjct: 1117 ELCINIKEDITISHIPIILLTARDDKQSLISGYKNGADAYLTKPFEVEMLMEIISNRLKN 1176

Query: 121  QK 122
            ++
Sbjct: 1177 RE 1178


>gi|89893206|ref|YP_516693.1| hypothetical protein DSY0460 [Desulfitobacterium hafniense Y51]
 gi|219666479|ref|YP_002456914.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
 gi|89332654|dbj|BAE82249.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536739|gb|ACL18478.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
          Length = 1018

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+VD      K   ++     + V  A +   A    +     +  ++D  M G    
Sbjct: 691 SILVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMMPGISGY 750

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ +  L  +   E M AG RAGAN F+ KPF    L+  +  L Q+
Sbjct: 751 EVCRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRVSTLVQL 810

Query: 121 QK-----SKDENQFLDA 132
           +       K E  FL A
Sbjct: 811 KNSMDLLLKKETAFLQA 827


>gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 263

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++LLV+   ++RK        +G+ V  A       E        + L++D  +     +
Sbjct: 37  TILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQH-DLLLLDVMLPALDGI 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +   +  +    D   +++G  AGA+ +++KP +   L   +R L + 
Sbjct: 96  GLCRRIRE---TSTAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 152


>gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++ +VD    + ++        G+ V    +     E  EK   P+ +++D  +      
Sbjct: 5   TVYVVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSE-PDIVILDIMLPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +DV +  L  + +    + G   G++ ++ KPF+   L   ++++ + 
Sbjct: 64  EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 220

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LL++    +RKV ++     G+ V EA    EA E    E   +  ++D  +  + 
Sbjct: 1   MERILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFY-ENTFDLAILDVMVPKID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L      +  + G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 60  GWTICRKIRKESK---IPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLL 116

Query: 119 QMQKSKDENQFLD 131
           + + +K E   L 
Sbjct: 117 KRKDTKTEENSLK 129


>gi|307131849|ref|YP_003883865.1| transcriptional regulatory protein tctD [Dickeya dadantii 3937]
 gi|306529378|gb|ADM99308.1| Transcriptional regulatory protein tctD [Dickeya dadantii 3937]
          Length = 224

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +        ++ GF V        A +   +E     +V+D S+  +   
Sbjct: 2   RLLLVEDHPELAHWLEKALSEAGFAVDRVGDGVAADQLLLQESY-ALVVLDVSLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G ++ V  L         + G   GA+ +L KPF    L   +R L +  +
Sbjct: 61  ALLARLRKRGQNLPVLLLTARASVADRVRGLNLGADDYLTKPFELAELEARLRALLRRSQ 120

Query: 123 SK-DENQFL 130
            +  E Q L
Sbjct: 121 GQIQEVQRL 129


>gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
 gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4]
          Length = 312

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    E+ + P+ +++D  M G+  F 
Sbjct: 11  ILLVDDSPEALGFLTDALEQSGFSVLIATSGQGALGIVER-ISPDLILLDAVMPGMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    V V ++    + E ++     G   +L KP N + LR  +R      
Sbjct: 70  TCRQIKANPAVAQVPVIFMTGLSETEHVVHALEVGGVDYLTKPINIDELRARIRVHLANA 129

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 130 RSAQSARVALDA 141


>gi|218441976|ref|YP_002380305.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218174704|gb|ACK73437.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 465

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D      ++   +    G+ V +A +   A +  +    P+ +++D  M  +    
Sbjct: 13  ILIIDDQAANLRILSEILTQNGYKVRKAINPLSALKAIQSTP-PDLILLDIKMPEMDGYQ 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P  +++ V ++    +    +     G   ++ KPF    +   ++    +Q
Sbjct: 72  LCEQIKSDPELSEIPVIFISALDEVFNKVRAFEVGGVDYITKPFQDGEVIARIKNQLLIQ 131

Query: 122 KSKDENQ 128
             K + +
Sbjct: 132 SQKKQLR 138


>gi|172037422|ref|YP_001803923.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698876|gb|ACB51857.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 353

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD       + +      G  +        A    + +  P+ +++D  M  +    
Sbjct: 5   ILVVDDIPDNLLLIQLALEQDGHQLVSVNDGFSALAQID-QCPPDLILLDVMMPRMDGYE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ      + +  +    +   ++ G   GA+ F+ KP   + L+  +R L +++
Sbjct: 64  VTQKIRQNSRLPYIPILLITAH-EQSNVVKGLDTGADDFIRKPVQIDELQARVRSLLRLK 122

Query: 122 KSKDENQ 128
           +S D+ +
Sbjct: 123 QSIDQRE 129


>gi|170721093|ref|YP_001748781.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169759096|gb|ACA72412.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 246

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +  V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA    +A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|331017297|gb|EGH97353.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 160

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ++ G+MV  A     A    ++   P+ +++D  M G+  F 
Sbjct: 13  ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALMRIQR-RRPDLILLDAMMPGMDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P  +++ V ++    D E ++ G  AGA  +++KP     +   +    +  
Sbjct: 72  TCRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVIKPIQCNEMIARVASHLRTA 131

Query: 122 KSKDENQ 128
           ++    +
Sbjct: 132 RTLQSAR 138


>gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 227

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++ +  +           GF V  A                + +V+D  + G+   
Sbjct: 2   RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  L      +  + G  AGA+ +L+KPF    L   +  + + 
Sbjct: 61  QVCKRLRED-GRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRR 119

Query: 121 QKSKDENQFLDA 132
            +   + Q   A
Sbjct: 120 SRGSRKRQLQVA 131


>gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +      + G  V+ A +  EA +   K +  + +++D  M  +    
Sbjct: 6   ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDIL-KNIKVDLIILDIMMPKMDGIK 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A ++   +  +V +  L  ++D    I G   GA+ ++ KPF+   L   ++   +  K 
Sbjct: 65  ACMKIREML-NVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYKQ 123

Query: 124 KDEN 127
            + N
Sbjct: 124 LNNN 127


>gi|298375583|ref|ZP_06985540.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 3_1_19]
 gi|298268083|gb|EFI09739.1| DNA-binding response regulator/sensor histidine kinase [Bacteroides
           sp. 3_1_19]
          Length = 826

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+V+ +  +      L N   + +  A +  E  E    E +P+ ++ D  M  +
Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIA-AEQMPDLILTDLMMPEM 682

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR+  +   + +  +  +   ++ + G   GA+++L KPFN E L   + +L
Sbjct: 683 DGYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKL 742

Query: 118 PQMQKSKDE 126
            + ++   E
Sbjct: 743 LEQRRLLRE 751


>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GAN ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  134 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL++    + +         GF V       E  E    E   + +++D  +     +
Sbjct: 4   RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSE-QWDLILLDVMLPRLNGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         +  +         + G   GA+ +++KPF  E L   +R L + 
Sbjct: 63  EVCRRIRA---AKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119

Query: 121 QKSKDENQFL 130
              +   Q L
Sbjct: 120 VHPEANAQVL 129


>gi|325970799|ref|YP_004246990.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026037|gb|ADY12796.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 239

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +V+   ++R+  R      G+ V    ++  ARE    +  P+ L+ D  +     F 
Sbjct: 12  IYIVEDHEVIREGVRQYLELSGYAVRGFANLKSAREAFATQT-PSLLIQDVMLPDGDGF- 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A V+Q+   TD  V ++    +    I G   GA+ ++ KPF+ + L   ++ + +  ++
Sbjct: 70  AFVKQLKEKTDCPVIFMTARTEESDRILGFELGADDYISKPFSPKELVLRVQAVLRRYRN 129


>gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGSSAILEASSHN-PDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ ++ KPF+ E L   +R   
Sbjct: 60  MEGV-EVIKKIRTWSNMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQ 118

Query: 119 QMQKSKDENQFLDA 132
           +        + L++
Sbjct: 119 RRLAVMQSGEQLES 132


>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
          Length = 228

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 229

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 1/128 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+ D    +  +        GF         +A     +E  P   ++D +M  +  
Sbjct: 6   QSILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQI-RESAPAIALLDWNMPIITG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + V  +    + +  +A   AGA+ F+ KPFN   +   ++ L +  
Sbjct: 65  LDVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRS 124

Query: 122 KSKDENQF 129
            +   +Q 
Sbjct: 125 TAISPDQL 132


>gi|303236668|ref|ZP_07323249.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN]
 gi|302483172|gb|EFL46186.1| putative Response regulator SaeR [Prevotella disiens FB035-09AN]
          Length = 232

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    + ++ +      G++V  A S  EA E   +    N +++D  M  +  F 
Sbjct: 8   ILIVDDEVDICEILKFNLETEGYIVDTANSAEEALEL--QLTDYNLILLDVMMGQISGFS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + + +L  +      I G   GA+ ++ KPF+   +   +R +    
Sbjct: 66  MAKRMKENVETKHIPIIFLTAKDTENDTITGFNLGADDYISKPFSLREVMLRIRAVLNRT 125

Query: 122 KSKDE 126
           K+  +
Sbjct: 126 KNVAQ 130


>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 239

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    +           G+    A     A +       P+ +++D  +  +   
Sbjct: 13  SILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAAT-YRPDLIIMDIMLPVMDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R + +   V +  L    D    + G  AGA+ ++ KPF+   L    + L +  +
Sbjct: 72  EATKRIVTMRP-VPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVE 130

Query: 123 SKD 125
              
Sbjct: 131 RAK 133


>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 246

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  +     +  G+ V       +A +    EL  + +V+D ++ G+   
Sbjct: 22  KLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELY-DLIVLDLNLPGMDGM 80

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     +  V  L         + G  +GAN ++ KPF+ + L   +R L + 
Sbjct: 81  EILRELRK--ENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRR 138

Query: 121 Q 121
           +
Sbjct: 139 K 139


>gi|218963798|gb|ACL13561.1| CopR [Pseudomonas fluorescens]
          Length = 231

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+ +    +    +    + GF V   T+  +A +    E   + L++D  M G+  +
Sbjct: 2   RLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGKDALQHALSEAY-DLLILDVMMPGLDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G +V V +L      E  + G   GA+ +L+KPF    L   +R L + 
Sbjct: 61  EVLQKVRASGKNVPVLFLTARDRVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 118


>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 239

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V    +       + V  A    +A +   +E  P  +++D  +     +
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEK-PTLILLDWMLPVYDGM 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    +DV +  L  +     + +    G + +L KPF  E L   +R + + 
Sbjct: 66  TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122

Query: 121 QKSKDEN 127
            +   + 
Sbjct: 123 LEKMRQQ 129


>gi|223046625|gb|ACM79363.1| GAF sensor hybrid histidine kinase [Arthrospira platensis FACHB869]
          Length = 785

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD           L       V  A +  +A E  E++   + +++D  M  +  
Sbjct: 663 RRVLVVDDDVRNIFAITSLLEAQDIDVRFAENGRQALERIEQDRDIDLVLMDIMMPEMDG 722

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              I  +R+ P  + + +  L  +           AGA  ++ KP + E L   +R   
Sbjct: 723 YAAIRAIREKPQWSTLPIVALTAKAMQGDRAKCIEAGATDYITKPIDAEQLLSLLRVWL 781



 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+V+S     ++   +  + GF    A S  E  E     L P  + ++ ++  +    
Sbjct: 398 LLIVESDESFAQILYDVAREHGFRTLVALSGAEGLELARA-LTPAAITLELTLPDMDGWV 456

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE----- 116
            +  ++       + V  +    D        + GA + L KP N E L  AM+      
Sbjct: 457 VLDRLKHDLATRHIPVQIISALGDEH---RARKRGAIACLHKPANAEWLARAMQAMQRAR 513

Query: 117 -----LPQMQKSKDENQFLDA 132
                +   ++ + + + L A
Sbjct: 514 APRQTIVAGRRDERQRERLAA 534



 Score = 41.7 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 10  SHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVR 67
               R+       +    V    S  EA E  + E L +  V+   M G+  LE I    
Sbjct: 525 DERQRERLAAFIGNGDVKVVAVGSGEEALERLDGE-LFDCAVVALKMAGMSGLELIRRAT 583

Query: 68  QMPLGTDVFVYY 79
            +     + +  
Sbjct: 584 AITGLRHLPILV 595


>gi|219667618|ref|YP_002458053.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
 gi|219537878|gb|ACL19617.1| signal transduction histidine kinase, LytS [Desulfitobacterium
           hafniense DCB-2]
          Length = 1016

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           +LL VD      +V   LF +  + V  AT+  EA E  +     + +++D  M  +   
Sbjct: 689 TLLAVDDDSANLQVLARLFANEPYNVLWATNGLEALELLKSRSDIDLVLLDVMMPRMSGY 748

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ V  L +      + AG +AGAN F++KPF+   +R     L Q+
Sbjct: 749 EVCREIRRQFSLFELPVILLTVRHSPGDIAAGFKAGANDFMIKPFDALEVRARTETLLQL 808

Query: 121 QK-----SKDENQFLDA 132
           ++      K E  FL +
Sbjct: 809 KQSVAAALKAEMDFLQS 825


>gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 228

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +LLV+    +R++      + GF + EA +  +       +   + +V+D  +  +  
Sbjct: 3   NRVLLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDC-DIVVLDIMLPDISG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R++   T + V  L    D    I G   GA+ ++ KP N   L   ++ L + 
Sbjct: 62  L-EVLRELRAETHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRR 119


>gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612]
 gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612]
          Length = 229

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M + +L+VD    +  +      + G+ V +  S  EA      E  P   V+D  M  +
Sbjct: 1   MQTEILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALAS-GLENPPELAVLDVMMPEL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    R         +  L    +    I G   GA+ ++ KPF    L   ++   +
Sbjct: 60  DGFTLCRRLREKY-TFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLR 118

Query: 120 MQK 122
             +
Sbjct: 119 RSQ 121


>gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 228

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    +      +     + V    +  +A E+   +   + +++D  M  +   
Sbjct: 2   RILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNY-DVIILDIMMPKMNGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    G    +  L  + + E  I G  AGA+ +L KPF    L   +R + + +
Sbjct: 61  ETLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRK 119


>gi|218264787|ref|ZP_03478491.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221793|gb|EEC94443.1| hypothetical protein PRABACTJOHN_04200 [Parabacteroides johnsonii
           DSM 18315]
          Length = 548

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             LL++D S  +R   +H+FN   + + EA +  +  +   KE  P+ ++ D  M     
Sbjct: 301 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGIDVALKEE-PDLILCDVMMPVKDG 358

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P      V  L  +V+ E +I G  AGA+ ++ KPF+ E LR  +  L +
Sbjct: 359 YETCREIKSDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLMK 418

Query: 120 MQK 122
            ++
Sbjct: 419 KRE 421


>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
 gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
          Length = 224

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R + +       +   +  +  +A ++       + +++D  + G+   
Sbjct: 2   RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADY-DGIILDIMLPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V +L      E  + G   GA+ +L+KPF+ E L   +R + + + 
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 123 SKDENQF 129
           +   N+ 
Sbjct: 121 ALVSNRL 127


>gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 227

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    +R+    + +  G+ V  A +   A    ++E  P+++++D  M  + 
Sbjct: 1   MK-ILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQE-QPDFIILDIMMPELD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        V +L  + +    + G   GA+ ++ KPF    +R  ++ + 
Sbjct: 59  GYSVCKEIRKHDE--QTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIA 116

Query: 119 QMQKSKDEN 127
           +      +N
Sbjct: 117 RRCLKAKQN 125


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        GF V  A S   A     +E  P+ LV+D  +  +  F
Sbjct: 6   RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREP-PDLLVLDVMLPDIDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G DV   +L      E  + G   G + ++ KPF    L   +R + +   
Sbjct: 65  AVCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAG 124

Query: 123 SKD 125
             D
Sbjct: 125 MAD 127


>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 236

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + K+  +  N  G+    + +  +A E   +    + +++D  + G+  F 
Sbjct: 6   ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSR-KSFDLVLLDVMLPGMDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  L  D+ +  +  + +    I G   G + +++KPF+   L   +R + +  
Sbjct: 65  LCRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKRD 124

Query: 122 KSK--DENQFLDA 132
           + +     + L A
Sbjct: 125 RRQGGKIEELLKA 137


>gi|95930792|ref|ZP_01313524.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfuromonas acetoxidans DSM 684]
 gi|95133140|gb|EAT14807.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfuromonas acetoxidans DSM 684]
          Length = 384

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD      +V   +     + V  A S   A +    E  P+ +++D  M  +  
Sbjct: 13  KTILVVDDIRENLEVIGGVLQS-DYRVRVANSGQRAIKAAASEPRPDLILLDVMMPEMDG 71

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  ++  P   ++ V ++      +    G   GA  ++ KP     L    +   +
Sbjct: 72  YAVLRELKANPATKEIPVIFVTAMDSDQDEEFGLALGAVDYVTKPIRPAILLARAQTQLE 131

Query: 120 MQKSKDENQ 128
           +++S+D  Q
Sbjct: 132 LKESRDRLQ 140


>gi|319640073|ref|ZP_07994800.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388351|gb|EFV69203.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1294

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 1046 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1103

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 1104 CKAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1163

Query: 123  SKDE 126
               +
Sbjct: 1164 LLRQ 1167


>gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 233

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     EK     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++    +V V  L  + D E  ++G R GA+ +L KPF    L   +  L +
Sbjct: 61  NGF-QVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|291280089|ref|YP_003496924.1| hypothetical protein DEFDS_1712 [Deferribacter desulfuricans SSM1]
 gi|290754791|dbj|BAI81168.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 470

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 1/132 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    VR   + +     + V +  +   A E    E   ++++ D  M  +  
Sbjct: 6   TRILIVDDEDYVRDSLKIILLAENYEVVDVDNGYRALELL-NEKYFDFVITDIKMPEMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +      ++ V  +      +  IA  + GA  ++ KPF  E L   + +  + +
Sbjct: 65  ITLLKKIKEKYPEIPVIVMTGFPSIDNAIAALKEGAFDYVTKPFKVEDLINKLHKAYETK 124

Query: 122 KSKDENQFLDAI 133
           K + +   L+ +
Sbjct: 125 KLRKQVVELNKL 136


>gi|254881065|ref|ZP_05253775.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254833858|gb|EET14167.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1328

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 1138 CKAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197

Query: 123  SKDE 126
               +
Sbjct: 1198 LLRQ 1201


>gi|261415659|ref|YP_003249342.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372115|gb|ACX74860.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326073|gb|ADL25274.1| sensory box histidine kinase/response regulator [Fibrobacter
            succinogenes subsp. succinogenes S85]
          Length = 1260

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEGV 59
              +LLV+ + + R++   L  D GF VF A +  EA E   +      + +++D  M  +
Sbjct: 1136 KKVLLVEDNEMNRQIACDLLEDNGFEVFTAENGEEAVELVRQSVPGQYDIVLMDVQMPVM 1195

Query: 60   LE--FIAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                    +R +P G  + + +  +      E   A   AG +  + KP N + +++ + 
Sbjct: 1196 DGYAATRAIRVLPAGYQSRIPIIAMTANAFEEDRKAALDAGMDEHISKPINFDKMKYILS 1255

Query: 116  ELPQM 120
               + 
Sbjct: 1256 RFLKK 1260


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        GF V+ A S  EA     +E+ P+  ++D  M G+  F
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIA-REINPDAYIMDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   ++ I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 67  ELLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 126

Query: 123 SKDEN 127
           + D+ 
Sbjct: 127 AVDDQ 131


>gi|224538556|ref|ZP_03679095.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519824|gb|EEF88929.1| hypothetical protein BACCELL_03450 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1367

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +    +       + +    +  EA +    +  P+ ++ D  M  +   
Sbjct: 1116 RILIVEDEEEILSYLKEELEG-DYRIMTRKNGREAYDTILADT-PDLVISDIMMPEMDGL 1173

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      V V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1174 SLCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLLAN 1233

Query: 121  QKSKD 125
            +K   
Sbjct: 1234 RKLLK 1238


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    +R++ +     F + + +  +  +A ++ +   + +  ++D  + G+ 
Sbjct: 1   MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKV-DLAILDLMLPGMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R      D+ V  L  +      I G   GA+ +L KPF+   L   +R L 
Sbjct: 60  GYDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLL 119

Query: 119 QMQKSKDEN 127
           +  K  +  
Sbjct: 120 RRSKKDERL 128


>gi|50084005|ref|YP_045515.1| component of chemotactic signal transduction system [Acinetobacter
            sp. ADP1]
 gi|49529981|emb|CAG67693.1| component of chemotactic signal transduction system [Acinetobacter
            sp. ADP1]
          Length = 1437

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +++VD S  VRKV   L    G+ V  A    +A E  E  + P+ +++D  M  +  F 
Sbjct: 1310 IMVVDDSVTVRKVTSRLLERQGYDVVTAKDGQDALEQLE-HIRPSLILLDIEMPQMDGFE 1368

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++RQ  +   + +  +      +      + G + ++ KPF  + L   ++ L    
Sbjct: 1369 LTRYIRQHSILNSLPIIMITSRTGEKYREIAQQLGVDDYMGKPFQEDDLLTKIQNLLAQN 1428

Query: 122  KSKDENQ 128
            K+   +Q
Sbjct: 1429 KAIKHSQ 1435


>gi|16762375|ref|NP_457992.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143863|ref|NP_807205.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052748|ref|ZP_03345626.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426105|ref|ZP_03358855.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581244|ref|ZP_03363070.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213620677|ref|ZP_03373460.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648768|ref|ZP_03378821.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289807544|ref|ZP_06538173.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289825991|ref|ZP_06545150.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25300970|pir||AC0943 two-component response regulatory protein STY3812 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504679|emb|CAD09565.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139499|gb|AAO71065.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 232

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L    +    + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGNELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   +       +  +  + V   +    A E  +     + +++D  +  + 
Sbjct: 1   MK-ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQT-YDYDLILLDVMLPRLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G  + +  L       +   G  AGA+ +++KPF+ E L   +R L 
Sbjct: 59  GISLCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118



 Score =  110 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L VD    +  + + L + +G  V       +  E   +++ P+ L++D  M     +
Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETL-RDVNPDLLILDVEMPYTNGI 438

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR  P  +++ + +L +  D E +      GA+ F+ KP     L   +    + 
Sbjct: 439 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 498

Query: 121 QKSKDE 126
            K    
Sbjct: 499 VKLLRR 504



 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ D   ++R   + L    G+ VF   +  EA      +  P+ +V+D  M G+  + 
Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQH-PDVIVLDLLMPGMNGWE 1437

Query: 64   --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              A +++      + +    +                 ++ KP     L  ++R+     
Sbjct: 1438 TMAMLKESTETKHIPIVICSVYKPTSNHQPSRD--FVDWVSKPVQESYLLHSLRQAIAKS 1495

Query: 122  KSK 124
              +
Sbjct: 1496 SHR 1498



 Score = 69.5 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    + ++   LF       F A +  EA     +E+ P+ L++D  +     F
Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAI-HLSQEVNPDLLILDLILPETDGF 1558

Query: 63   IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQ 119
                 +++     ++ V     +   E      + G   FL K     +     + EL Q
Sbjct: 1559 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ 1618

Query: 120  M 120
             
Sbjct: 1619 R 1619


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +      L    GF    A     A     +    + +++D  + G+ 
Sbjct: 1   MTTILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRND-IDIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +   ++V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCKELRLV---SNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLV+    +  +    F   GF V  A            E   + +++D  +  +  
Sbjct: 25  RSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAI-EGSFDLIILDVMLPVLDG 83

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F   +RQ+   +   V  L   +     +AG  +GA+ +L KPF  + L   +R + + 
Sbjct: 84  F-EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRR 141


>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 240

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A+    A +    +L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAA-TQLRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L + 
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|238894401|ref|YP_002919135.1| hypothetical protein KP1_2384 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546717|dbj|BAH63068.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 404

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ S + R++   +   +G++V EA +  +A    E + + + ++ D  M  +  
Sbjct: 4   QHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVDALAILENQPV-SLVISDWEMPEMNG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+   G  V++  L    D   +  G  AGA+ FL KP  +  LR  +    +
Sbjct: 63  LTLCREIRRRQFGRYVYLILLTAREDPGDLTQGFEAGADDFLSKPVEQSELRARLHAGAR 122

Query: 120 MQKSKDEN-----QFLDAI 133
           +   + +      +  +A+
Sbjct: 123 ILSLEADLAARNTRLSEAL 141


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +V+D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQII-STYEVDLMVLDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEMREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 243

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+  R L     + V EA +     +  ++    + +++D  M  +   
Sbjct: 10  KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDET--IDLVILDIMMPKLNGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V V +L  +      + G   G + +L KPF+   L   ++ L + 
Sbjct: 68  KVCEEIRK---TSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124

Query: 121 QK 122
            +
Sbjct: 125 YQ 126


>gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 239

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +R +        G+ V  AT    A+E  +    P+ +++D ++   L  
Sbjct: 5   KILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQS-FSPDLVILDINLPDTLGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                   M    D +V  L    D    + G   GA+ +L KPF+   L   +  + + 
Sbjct: 64  ALCEQ---MQESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRR 120

Query: 121 QKS 123
           Q+S
Sbjct: 121 QRS 123


>gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  + +  EA    E E   + +++D  M  +  F
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEK-FDLILMDIMMPKIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +   T+  + +L  + + +  I G  +G + ++ KPF+   L   M  + +   
Sbjct: 63  -EAIKIIRKLTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSN 121

Query: 123 SKD 125
            ++
Sbjct: 122 VRE 124


>gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 229

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +   +    N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM--ELTQYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      + + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 ------QKSKDENQ 128
                 ++++++ Q
Sbjct: 123 TSPTQGKEAQEQLQ 136


>gi|29347045|ref|NP_810548.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338943|gb|AAO76742.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1321

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   +  A+   EA +  +    P+ +V D  M  +   
Sbjct: 1062 SILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHT-PDIIVSDVMMPRMNGY 1120

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + V  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1121 ELCKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRLKN 1180

Query: 121  QKSKDENQFLDA 132
            ++   + ++L+A
Sbjct: 1181 REHTKK-RYLNA 1191


>gi|189345725|ref|YP_001942254.1| response regulator receiver protein [Chlorobium limicola DSM 245]
 gi|189339872|gb|ACD89275.1| response regulator receiver protein [Chlorobium limicola DSM 245]
          Length = 124

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+VD S  +R++  H      F V  A    EA +   +    + LV+D +M G
Sbjct: 1   MKPHTILVVDDSPNIRRLLAHNLGRK-FTVLTAGDAAEALDILTRSEKTDLLVVDIAMPG 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F   A ++  P   ++ +  L  +   E    G + GA  ++ KPFN E     +  
Sbjct: 60  MDGFSLTALIKSNPEYRNIPLVMLTAKDCSEDREKGLKLGAADYMTKPFNLEEFSEKIET 119

Query: 117 LPQMQ 121
           L +  
Sbjct: 120 LLKRH 124


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD               +   V  A +  +  E  +     N +++D  M  +  
Sbjct: 1091 RKILIVDDDLRNIFALTSFLESYQMQVLFAENGRDGIERLQTNPDINIVLMDIMMPEMDG 1150

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +RQ      + +  L  +           AGA+ ++ KP + E L   +R    
Sbjct: 1151 YETTRAIRQQQQFRSLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWLY 1210

Query: 120  M 120
             
Sbjct: 1211 R 1211



 Score = 88.7 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+++      ++   +  + GF    A    +      ++  P+ +++D  M  +    
Sbjct: 825 LLIIEDDEKFARILLDMAREQGFKAIVALQSKQGLALA-QQFKPDAIMLDIYMPEMDGWT 883

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA---MRELP 118
            +  ++  P    + V+ L +    E+   G + GA ++L KP + E L      ++   
Sbjct: 884 VLDRLKHKPDTRHIPVHILSV---DERQQRGLQLGAITYLQKPVSPEALTQVLTDIKGFI 940

Query: 119 QMQ 121
           + Q
Sbjct: 941 ERQ 943



 Score = 67.1 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 49/141 (34%), Gaps = 13/141 (9%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+   +  +    L  +         +  EA     +    + +V+D  +  +  
Sbjct: 945  RNLLIVEDDPVQAQSIIELIGNGDVQSTAVGTGAEAL-LILRSQHFDCMVLDLGLPDMSG 1003

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPF-NRETLRFAMR 115
            F  I  ++Q P    + +     +      E  + G    A + ++K   + E L     
Sbjct: 1004 FALIEQIKQEPRLLKLPIIVYTGKELSRQEETQLRGL---AETIIIKNVRSPERLLDETA 1060

Query: 116  ELPQMQKS---KDENQFLDAI 133
                  ++   + + Q L+ +
Sbjct: 1061 LFLHRVQANLPQPKRQMLEQL 1081


>gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1314

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            LL+V+ +  +R     +F      V  AT+  EA +  +K+  P+ ++ D  M  +    
Sbjct: 1063 LLIVEDNADLRNYLEEIFGST-LKVSMATNGKEAWDMIQKDT-PDAVLSDVMMPEMDGLE 1120

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              + V+  P    + +  +         + G  +GA+ +++KPFN + L   +  L Q +
Sbjct: 1121 LCSKVKNHPKFAHLPIVLITARAAAVHELEGIESGADDYIVKPFNPKILFSKVTALLQNR 1180

Query: 122  KSKDEN 127
            K   E 
Sbjct: 1181 KKLREL 1186


>gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+V+    +       F    + V  A     A +  +     + +++D  +     F  
Sbjct: 12  LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 71

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +G    V  +    + E  + G   GA+ ++ KPFN E L   ++ + Q 
Sbjct: 72  LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQR 127


>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  +      + G+ V +  +  +A E  E + + +  ++D  +  +  F 
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKM-DLAILDVMLPDIDGFR 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+        +  L  +V+    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 64  ICQKIREQYFY---PIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119


>gi|255654526|ref|ZP_05399935.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296449294|ref|ZP_06891079.1| response regulator [Clostridium difficile NAP08]
 gi|296880773|ref|ZP_06904722.1| response regulator [Clostridium difficile NAP07]
 gi|296261893|gb|EFH08703.1| response regulator [Clostridium difficile NAP08]
 gi|296428220|gb|EFH14118.1| response regulator [Clostridium difficile NAP07]
          Length = 224

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + +L+VD    +  + +  F    + V+ A S  +A +   K   P+ +++D ++     
Sbjct: 3   NKILVVDDEEGIITLLKDYFEMNSYEVYTAQSGKDALKKISKN--PDIILLDINIPEIDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R         + +L   ++    I G RAGA+ +++KPF+ + L   +    +
Sbjct: 61  IEVCNRIR---DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLR 117

Query: 120 MQKSKD 125
            ++ K 
Sbjct: 118 REQRKS 123


>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   +       F V EA    +  +  EK    +  V+D  + G+ 
Sbjct: 1   MRRILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEK-FSIDLAVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L         I G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GFKVCDELRKR--YPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAIL 117

Query: 119 QMQKSKDE 126
           +    + +
Sbjct: 118 RRTGDESQ 125


>gi|170079421|ref|YP_001736059.1| histidine kinase response regulator hybrid protein [Synechococcus
           sp. PCC 7002]
 gi|169887090|gb|ACB00804.1| histidine kinase response regulator hybrid protein [Synechococcus
           sp. PCC 7002]
          Length = 372

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD      ++   +  + G  V +  +  +A +    +  P+ +++D  M       
Sbjct: 13  ILIVDDVPENLQLLSEILVEKGHEVRQVINGKQALKAVAADP-PDLILLDIKMPILDGYG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + + ++    D    +     G   ++ KPF+   +   +    ++ 
Sbjct: 72  VCQRLKANPDTAKIPIIFISALNDVFDKVKAFSLGGVDYINKPFDMYEVLVRVENQLKIL 131

Query: 122 KSKDENQ 128
           ++  E +
Sbjct: 132 RNAQELE 138


>gi|168178301|ref|ZP_02612965.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226948175|ref|YP_002803266.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671135|gb|EDT83109.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842363|gb|ACO85029.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 223

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   +E   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYRE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERR 127


>gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 229

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++VD    + K          + V +A +  +A E  EK    +  ++D  MEG+ 
Sbjct: 1   MYNIMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNK-IDLFLVDIMMEGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +   + ++  +  L  + +    + G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GLELTQKIREV-SNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRR 118

Query: 121 QKSKD 125
            +   
Sbjct: 119 LELSK 123


>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
 gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +  +      + G+ V +  +  +A +  E + L +  ++D  +  +  F
Sbjct: 4   SILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +V+    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  RICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119


>gi|148977298|ref|ZP_01813912.1| probable transcriptional regulator SyrB [Vibrionales bacterium
           SWAT-3]
 gi|145963411|gb|EDK28675.1| probable transcriptional regulator SyrB [Vibrionales bacterium
           SWAT-3]
          Length = 222

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G+ V        A EF +   + + +++D  +  + 
Sbjct: 2   MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGEAALEFIQSNPV-DLVLLDVMLPNLS 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I   R++       +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 61  G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 119

Query: 121 QKSKDENQFLDA 132
              + + Q L +
Sbjct: 120 VGFERQRQSLAS 131


>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score =  134 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    ++ + R  F +    V  A +  +  +        + +V+D  +  +  F
Sbjct: 4   RILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   + V V  L    D    I G   GA+ ++ KPFN   L   ++ + +   
Sbjct: 64  -ETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122

Query: 123 SKDE 126
           +  E
Sbjct: 123 ASAE 126


>gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 244

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    + +V+    ++++ ++     G+ V    +     +   +  +P   ++D  +  
Sbjct: 1   MTKSLIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQE-TRLKVPELFLLDIMLPD 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R+ P    V +  L  + +    + G   GA+ ++ KPF+   +   ++ 
Sbjct: 60  IDGLELCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKA 119

Query: 117 LPQM 120
           + + 
Sbjct: 120 VLRR 123


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A +  +A     +E  P+ +V+D  +      
Sbjct: 24  RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAV-RAAREFDPDAVVLDMMLPDFDGL 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      +V V +L  +   E  ++G  AG + ++ KPF+ E +   +R L + 
Sbjct: 83  EVLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRR 140


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + VF+  +  EA   C +    +  V+D  +  +  F
Sbjct: 2   NILVVDDEKEIADLIELYLKNENYHVFKFYTAQEAL-ACIEHEKVDLAVLDIMIPDIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R++    +  V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 61  T-ILRKIRETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRR 117


>gi|295101813|emb|CBK99358.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    VR +        G+    A++   A         P+ +++D  +  +   
Sbjct: 5   TILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPDIDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  +R +   +++ +  L    +    I     GA+ +L KPF+ + L   +R   +   
Sbjct: 63  IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLN 122

Query: 123 SKDEN 127
               +
Sbjct: 123 LLASD 127


>gi|283834685|ref|ZP_06354426.1| hypothetical protein CIT292_08903 [Citrobacter youngae ATCC 29220]
 gi|291069611|gb|EFE07720.1| transcriptional regulatory protein CpxR [Citrobacter youngae ATCC
           29220]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|259909095|ref|YP_002649451.1| Putative transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|224964717|emb|CAX56234.1| Putative transcriptional regulator [Erwinia pyrifoliae Ep1/96]
 gi|283479121|emb|CAY75037.1| Transcriptional regulatory protein kdpE [Erwinia pyrifoliae DSM
           12163]
 gi|310767005|gb|ADP11955.1| Putative transcriptional regulator [Erwinia sp. Ejp617]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R       F V +A ++            P  +++D  +    
Sbjct: 1   MTTILIVEDEKEIRRFLRVALEGEDFRVVDAETLKRGL-IEAATRKPQLVILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + + V  L    D    I    AGA+ FL KPF    L   +R   + 
Sbjct: 60  G-CQFIREIRQWSTMPVIVLSARSDERDKITALDAGADDFLTKPFGVGELLARVRVALRH 118

Query: 121 QKSKDE 126
           +    E
Sbjct: 119 RPQNSE 124


>gi|224823780|ref|ZP_03696889.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604235|gb|EEG10409.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    + ++ R      G MV  A +  +           + LV+D  M G   +
Sbjct: 15  KVLLVDDDVELAEMLRDYLEREGCMVALAANGSDGLALALSGDY-HLLVLDVMMPGINGI 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ      + V  L  + D    + G   GA+ ++ KP     L   +R + + 
Sbjct: 74  EVLRRLRQQSA---LPVLMLTAKGDDLDRVLGLELGADDYVPKPCTPRELLARIRAILRR 130

Query: 121 QKSKDENQ 128
              ++  Q
Sbjct: 131 GALREVRQ 138


>gi|209524850|ref|ZP_03273396.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|284050500|ref|ZP_06380710.1| response regulator receiver, CheY [Arthrospira platensis str.
           Paraca]
 gi|209494729|gb|EDZ95038.1| response regulator receiver protein [Arthrospira maxima CS-328]
 gi|291568065|dbj|BAI90337.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 121

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M+++++V+ S   R++  +L  + G  V  A+   EA E   +++ P+ +V+D  M  + 
Sbjct: 1   MNTIMVVEDSVTQREMISNLLRESGLKVAVASDGVEALEQV-QQISPDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    + +     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYELCRRLKSDPKTQKIAIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    + ++   + +D  ++V  A    +A ++       + +++D ++     +
Sbjct: 2   RILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEY-DLVILDVTLPRLDGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R    G    V  L         + G  AGA+ +++KPF    L   +R + + 
Sbjct: 61  GFCQRWR--GKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRR 118

Query: 121 QKS 123
             +
Sbjct: 119 SGA 121


>gi|171059251|ref|YP_001791600.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776696|gb|ACB34835.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 222

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL++ +  ++   +  F   G  V        A +  +    P+ +++D S+ GV 
Sbjct: 1   MK-LLLIEDNLAMQTSLQRAFERRGMQVVTCADGARALDRWQAS-QPDVVLLDLSLPGVD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V  L         + G   GA+ +L KPF+ + L   ++ L + 
Sbjct: 59  GLEVLTRARAEGLRTPVIILTARGAVGDRVLGLNTGADDYLAKPFDLDELEARVKALVRR 118

Query: 121 QKSKDEN 127
           Q S+  +
Sbjct: 119 QPSERHD 125


>gi|152972720|ref|YP_001337866.1| DNA-binding transcriptional regulator CpxR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206580779|ref|YP_002241206.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae 342]
 gi|238892328|ref|YP_002917062.1| DNA-binding transcriptional regulator CpxR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041695|ref|ZP_06014887.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288937842|ref|YP_003441901.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290513068|ref|ZP_06552431.1| DNA-binding transcriptional regulator CpxR [Klebsiella sp. 1_1_55]
 gi|330004466|ref|ZP_08304958.1| transcriptional regulatory protein CpxR [Klebsiella sp. MS 92-3]
 gi|150957569|gb|ABR79599.1| response regulator in two-component regulatory system with CpxA,
           regulates expression of stress-related genes (OmpR
           family) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206569837|gb|ACI11613.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae 342]
 gi|238544644|dbj|BAH60995.1| response regulator of stress-related two-component regulatory
           system [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040957|gb|EEW42036.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288892551|gb|ADC60869.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774450|gb|EFD82455.1| DNA-binding transcriptional regulator CpxR [Klebsiella sp. 1_1_55]
 gi|328536587|gb|EGF62916.1| transcriptional regulatory protein CpxR [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSVDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLDA 132
               ++ Q  +A
Sbjct: 118 SHWSEQQQTTEA 129


>gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
 gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1
 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
          Length = 225

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A S  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGERESTD 125


>gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1401

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            +LLV+ +   R   +    +  F + EA++  E  +     + P+ +V D SM  +  +E
Sbjct: 1141 VLLVEDNDDFRFYLKDNLKEVFF-LIEASNGREGWQKALA-MHPDIIVSDISMPEMTGIE 1198

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L         I G   GAN ++ KPFN E L   ++ +  ++
Sbjct: 1199 LCKKLKSDKRTSHIPVVLLTALTGEADQIKGLEIGANDYMTKPFNFEILLSKIKNILTLR 1258

Query: 122  KSKDE 126
             +  +
Sbjct: 1259 DTYKQ 1263


>gi|261252544|ref|ZP_05945117.1| DNA-binding response regulator [Vibrio orientalis CIP 102891]
 gi|260935935|gb|EEX91924.1| DNA-binding response regulator [Vibrio orientalis CIP 102891]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+ +  V  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MNKVLLVEDNREVAGILFDYFECEGMELDYADNGELGLQLAL-EGTFDLILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L    + E M+ G + GA+ +L KPF+ E L   ++ L + 
Sbjct: 60  GLTVCNKLREAGVNTPVLMLTALDNREDMLKGFKHGADDYLTKPFDLEILEARIQALIKR 119

Query: 121 QKSK 124
            + +
Sbjct: 120 YRGQ 123


>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    + V EA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDE 126
            +++  +
Sbjct: 119 SRQASKK 125


>gi|223938484|ref|ZP_03630377.1| response regulator receiver protein [bacterium Ellin514]
 gi|223892903|gb|EEF59371.1| response regulator receiver protein [bacterium Ellin514]
          Length = 134

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 4/134 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++        G+ V  A++  +A       L+P+ +V+D  +  +
Sbjct: 2   MRPRILIVDDEPDIVELVSFNLRAEGYEVVTASNGLDAVTQA-NSLIPDLIVLDLMLPEM 60

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   + + P    + +  L         + G   GA  ++ KPF+   L   +++ 
Sbjct: 61  DGLSVCELLHRFPTTARIPIIMLTAWTSELSRLIGLDYGAEDYMTKPFSPRELVLRVKKT 120

Query: 118 PQMQKSKDENQFLD 131
            Q   ++ +   L+
Sbjct: 121 LQAHPARPDGNQLN 134


>gi|158337180|ref|YP_001518355.1| response regulator [Acaryochloris marina MBIC11017]
 gi|158307421|gb|ABW29038.1| response regulator [Acaryochloris marina MBIC11017]
          Length = 121

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD S   R++  +   D G  V  AT   EA E  +    P+ +V+D  M    
Sbjct: 1   MQKVLVVDDSITQRQLMSNALEDMGLTVLIATDGVEALEQIQS-TQPDIVVLDIVMPRKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA+++L KP     L   +R+L 
Sbjct: 60  GYEVCREIKSNPTTQNVPVVICSSKTEDFDRYWGMKQGADAYLTKPIQPRELLVIVRQLL 119

Query: 119 Q 119
           +
Sbjct: 120 E 120


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R       + V          +   +E     +++D  +    
Sbjct: 1   MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQED-FALILLDVMLPKED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    ++R +    +V +  +  + +    I G   GAN +++KPFN   L   ++   
Sbjct: 60  GFQVCRNLRAV---KNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116

Query: 119 QMQK------SKDENQF 129
              +       + ENQ 
Sbjct: 117 ANYERLTQGTQRKENQL 133


>gi|307946075|ref|ZP_07661410.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
 gi|307769739|gb|EFO28965.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
          Length = 242

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R+         GF      S   A     K  + + +V+D  M G     
Sbjct: 8   ILVVDDHRDIRETLARYLIKNGFRATSVESAAHA-RKALKAAVIDLVVLDIMMPGEDGL- 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           +  R +     + V  L    D    + G   GA+ ++ KPFN   L   ++ + +   +
Sbjct: 66  SLCRHLVATGSIPVILLTAMADDMDRVIGLEIGADDYVTKPFNPRELLARIKAVLRRTNT 125

Query: 124 KDENQ 128
           + +++
Sbjct: 126 EPKDR 130


>gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 245

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD   +VR++        GF V        A +   ++  P  +V+D  M  +   
Sbjct: 4   SILVVDDDPVVRELVSGYLQGRGFKVDTLEHGM-ALQRQLQDERPALIVLDIMMPELDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + + 
Sbjct: 63  SALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRG 122

Query: 123 S 123
           S
Sbjct: 123 S 123


>gi|291619550|ref|YP_003522292.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291154580|gb|ADD79164.1| BaeR [Pantoea ananatis LMG 20103]
          Length = 233

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V        G+ V  A++     E   +   P+ +++D  +  +  
Sbjct: 7   KRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEHVGR-WQPDLILLDVMLPVMNG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +A +R+     D  V  +    D    I   R GA+ +++KP++   +   ++ + +
Sbjct: 66  TEVLAAIRRSG---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 122

Query: 120 MQKSKD 125
             +   
Sbjct: 123 RARQAK 128


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPY-DLVLLDLGLPKRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKD 125
           Q  + 
Sbjct: 119 QAGRS 123


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  V   +     + V       EA ++    +  + +++D  +     F
Sbjct: 18  RILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFS-VDYDAVILDIMLPKKDGF 76

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +         V +L      E  + G   GA+ +L+KPF  E L   +R L + 
Sbjct: 77  EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRK 134


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + +  +      G+ V    S  E       E   + +++D  + G+  F
Sbjct: 4   NILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENY-DLIILDLMLPGMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            + ++++   + + V  L  + + +  + G   GA+ +L KPF+ E L   +R   + 
Sbjct: 63  -SVLKEIRKKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRK 119


>gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+   ++ K    L N  GF V  A +  +A     +    +  +ID S+    
Sbjct: 1   MKHIFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNK-FDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++M    ++ V +L    D   ++ G   GA+ ++ KPF    L   ++   
Sbjct: 60  GFTVCTEIKEMM---NIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNAL 116

Query: 119 QMQKS 123
           +  +S
Sbjct: 117 RKSES 121


>gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 234

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++ +VD    + ++        G+ V    +     +  EK   P+ +++D  +      
Sbjct: 5   TVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSE-PDIVILDIMLPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L  + +    + G   G++ ++ KPF+   L   ++++ + 
Sbjct: 64  EICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRR 120


>gi|115376279|ref|ZP_01463519.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
 gi|115366704|gb|EAU65699.1| diguanylate cyclase [Stigmatella aurantiaca DW4/3-1]
          Length = 614

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD      +  R      G+   EA    +A     +E  P+ +++D  M G   
Sbjct: 292 RTVLIVDDDPTHVQHVREGLAPQGYRFREARDGAQALSAI-REHRPDLILMDVEMPGLGG 350

Query: 60  LEFIAHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +E    V+          + V  +         + G   GA+ +L+KPF+   L   ++ 
Sbjct: 351 VEVCRIVKANAGEGGFGFIPVILMTAR-QAAGKVEGLELGADDYLVKPFDMLELSARVKS 409

Query: 117 LPQMQKSKD----ENQFLD 131
           + +++  +D    +N+ LD
Sbjct: 410 MLRLKALQDALIEKNRELD 428


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+    + +         G++V  A +  EA E C  E   + +++D ++  + 
Sbjct: 1   MK-LLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDY-DLVILDINLPLMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F            V +  L  + D E  + G   GAN +++KPF+ E L   +R L + 
Sbjct: 59  GFSVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRR 118

Query: 121 QKSKD 125
           +  + 
Sbjct: 119 KTVQQ 123


>gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+ D +  +R++ + L    G+ V  A +  EA E  ++      +++D  M   
Sbjct: 1   MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES--IGLVILDVEMPKK 58

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 + +RQ      V + +L           G  AG + ++ KPF+   L   ++ L
Sbjct: 59  SGIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKAL 115

Query: 118 PQM 120
            + 
Sbjct: 116 LRR 118


>gi|298481664|ref|ZP_06999855.1| sensor histidine kinase/response regulator [Bacteroides sp. D22]
 gi|298272205|gb|EFI13775.1| sensor histidine kinase/response regulator [Bacteroides sp. D22]
          Length = 1348

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R      F D  F + E+ +  EA E   K+  P+ ++ D  M  +  F 
Sbjct: 1094 VLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGFT 1151

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L    
Sbjct: 1152 LCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINTR 1211

Query: 121  QKSKD 125
            Q+ + 
Sbjct: 1212 QQLRK 1216


>gi|297161562|gb|ADI11274.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1400

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD          H+    G  V  A +  E  E   +    + +++D  M  +  
Sbjct: 1254 RRILVVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLSRNPDVSLVLMDVMMPEMDG 1313

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R  P   D+ +  L  +           +GAN ++ KP + + L  A+ +L 
Sbjct: 1314 YETIRAIRGTPRLADLPIIALTAKAMPGDREKAIDSGANDYVPKPVDVDRLLSAVCDLL 1372


>gi|295105315|emb|CBL02859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +        G+    A++   A         P+ +++D  +  
Sbjct: 1   MNKPSILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +R +   +++ +  L    +    I     GA+ +L KPF+ + L   +R   
Sbjct: 60  IDG-IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQ 118

Query: 119 QMQKSKDEN 127
           +       +
Sbjct: 119 RRLNLLASD 127


>gi|256839706|ref|ZP_05545215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|256738636|gb|EEU51961.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 4/121 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ +      G+ V  A S  EA +      + N L++D  M  +  
Sbjct: 4   TRILVVDDEEDLCEILKFNLEIEGYEVDTAYSAEEALKK--DLTVYNLLLLDVMMREISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +RQ     +  + +L  +     M+ G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  FKMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|237722001|ref|ZP_04552482.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448870|gb|EEO54661.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1369

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L+V+ +  +         D  + V   T+  +A       LLPN ++ D  M  +  +
Sbjct: 1117 TILVVEDNRDLNNYICSCLADR-YNVVGVTNGEDALAKAVY-LLPNLIITDLMMPKMNGI 1174

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E I  +++    + + +  +  +   + +  G  AGA+ ++ KPF+   L+  +  L Q 
Sbjct: 1175 ELIRRLKKDMNTSHIPIIMVTAKTGTDDIKEGYAAGADEYITKPFDASILKIRVDNLIQS 1234

Query: 121  QKSKDEN 127
            ++   E 
Sbjct: 1235 REKLKEL 1241


>gi|187934010|ref|YP_001886396.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722163|gb|ACD23384.1| putative lantibiotic biosynthesis regulatory protein [Clostridium
           botulinum B str. Eklund 17B]
          Length = 220

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L +D    +  + +      G +V   ++  E      +    + +++D  M  + 
Sbjct: 1   MATILAIDDEIGILNIIKVALEKEGHIVTTVSNANE--ISYNQYTKYDLILLDIMMPEID 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D  + +L  +   E ++ G   G + ++ KPF    LR  +    
Sbjct: 59  GFTLCNKIRSL---VDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHL 115

Query: 119 QMQKSKDEN 127
           + ++ + +N
Sbjct: 116 RRERREKQN 124


>gi|167769067|ref|ZP_02441120.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM
           17241]
 gi|167668707|gb|EDS12837.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A         P  +++D  +  
Sbjct: 1   MNKPLILVVEDDVPVRNLITTTLKAHDYRFLTAANGESAILEASSHN-PEIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +R++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IEVIRKVRTWSNLPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRV-- 116

Query: 119 QMQKSKDENQFLDAI 133
                    + L AI
Sbjct: 117 -------TQRRLAAI 124


>gi|241205712|ref|YP_002976808.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859602|gb|ACS57269.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 233

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      + GF V  A    EA+      L  + +++D  M G   ++
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +    +V +  L    +    I G  AGA+ +L KPF+   L   +  + + 
Sbjct: 73  VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|119509383|ref|ZP_01628532.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119465997|gb|EAW46885.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 277

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++   + R +        GF    A +     +   +E LP+ +V D +M  +  
Sbjct: 7   KKILVIEDDTVTRNLYVKGLQAKGFDTISAENGLAGIQQA-QEHLPDLVVCDITMPDIDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +RQ P+   +   ++        +  G   GA+ ++ KPF  + L  A+    Q
Sbjct: 66  YSVLTMLRQDPVTAIIPFIFITGSCTRGCVRKGMELGADDYVTKPFTLDELLRAISTQLQ 125

Query: 120 MQKSKD 125
            Q    
Sbjct: 126 RQAMLQ 131


>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           MD +L+V+    + ++     N  GF   +A +  EA +          +++D  +    
Sbjct: 1   MDCILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVFNNTPDIGLVLLDIMLPQFN 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R+     ++ V +L  + D   ++ G   GA+ ++ KPF  + L   ++   
Sbjct: 61  GYEVLKYIRERS--PELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANL 118

Query: 119 QMQKSKDENQFLD 131
           + + +      + 
Sbjct: 119 RKKAAVSPRNRVA 131


>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 243

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L  D    +R+V R L    G+ V EA +  +A      +   + +++D  M G   
Sbjct: 17  RKILFADDDPEIREVVRILLESEGYQVVEAENGEQAASMA--DDTFDLIILDVMMPGRNG 74

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F   A +R+     +  + +L           G  AG + +L KPF+   L   ++ + +
Sbjct: 75  FSACAEIRRR---LNTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIR 131

Query: 120 MQKSKD 125
                 
Sbjct: 132 RYHIYK 137


>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R      GF         +  +        + +++D  + G  
Sbjct: 1   MKRILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNY-DVIIVDLMLPGKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R++    DV V  +  + +    I G   GA+ +L KPF+   L   ++   + 
Sbjct: 60  GY-EIIREIREKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRR 118

Query: 121 QKSKDEN 127
            +    N
Sbjct: 119 YERLKGN 125


>gi|254505487|ref|ZP_05117634.1| chemotaxis protein CheY [Vibrio parahaemolyticus 16]
 gi|219551604|gb|EED28582.1| chemotaxis protein CheY [Vibrio parahaemolyticus 16]
          Length = 127

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    +A          + ++ D +M  + 
Sbjct: 9   MTKILAVDDSVSIRQMVSHTLKDAGYQVETANDGQDALSKVMSTK-FDVVISDVNMPNMG 67

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R  P    + +  L  E   +K + G  AGA  +L+KPFN ETL   ++ + 
Sbjct: 68  GFELVKALRAKPQYKFIPILMLTTETSTDKKMQGKSAGATGWLVKPFNPETLLKTLKRVI 127


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +        ++  ++V  A+    AREF +     + +V+D  +  + 
Sbjct: 1   MK-ILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDV-FDYDLIVLDIMLPKLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G    +  L      +  + G  AGA+ +L+KPF+ E L   +R L 
Sbjct: 59  GISLCQQLRAN--GCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|222054627|ref|YP_002536989.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221563916|gb|ACM19888.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. FRC-32]
          Length = 454

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL+D    +R+V  +   + G+ V  A           +   P  ++ D  M G+  F
Sbjct: 4   KILLIDDDTSLRRVLEYNLQEEGYEVITAVDGETGLALFNEHSPP-LVITDLKMPGITGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  +      +  I   + GA+ ++ KPFNR+ L+  +++  +++ 
Sbjct: 63  QVLSTIKERSPATLVIVITAFGAIDTAIEAMKLGAHDYITKPFNRDQLKLVVKKALELRG 122

Query: 123 SKDENQFLDA 132
             +EN+ L  
Sbjct: 123 LTEENRLLKE 132


>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 250

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 1/115 (0%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAH 65
           +VD    +  +        G+ V  A+   +A     +E  P+ +V+D  M G+      
Sbjct: 28  VVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATI-REFRPDVVVLDIMMPGLDGLAVL 86

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            R    G    + +L  +   +  IAG   G + ++ KPF+ E L   +R L + 
Sbjct: 87  TRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRR 141


>gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    +R+  +   +  G+   EA S  EA +  E E  P   ++D  + G+  
Sbjct: 4   NKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEK-PAVAILDIMLPGISG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    R   +     +  +  +      I G   GA+ +++KPFN + L   +R L +  
Sbjct: 63  YEVCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRV 122

Query: 122 KS 123
             
Sbjct: 123 NL 124


>gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
 gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L  D    +R+V R L    GF V EA++  EA E        + +++D  M G   
Sbjct: 8   KRILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK--SGGSVDLIILDVMMPGKSG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +A +        V + +L           G  AG + +L KPF+   L   ++ + + 
Sbjct: 66  ILACLEIRKKL-TVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRR 123


>gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
 gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L  D    +R+V R L    GF V EA++  EA E        + +++D  M G   
Sbjct: 8   KRILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK--SGGSVDLIILDVMMPGKSG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +A +        V + +L           G  AG + +L KPF+   L   ++ + + 
Sbjct: 66  ILACLEIRKKL-TVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRR 123


>gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    V  +  +   + G+    A          +     + ++ D  +  + 
Sbjct: 1   MYTILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHT-FDLVISDIVLPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  L         + G  AGA+ +++KPF+   L   ++ L + 
Sbjct: 60  GFELAKEIRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119


>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 220

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L VD    +R +   +    G  V  A    E      K    + +++D  M G  
Sbjct: 1   MARILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLAL--KLDRYDLVLLDVMMPGTD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      D  + +L      +  + G   GA+ +L KPF    LR  +    
Sbjct: 59  GFELCRAIR---GSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHL 115

Query: 119 QMQKSKDE 126
           + ++ + +
Sbjct: 116 RRERRERK 123


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1821

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1761 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEQWMR 1819


>gi|197337852|ref|YP_002157772.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11]
 gi|197315104|gb|ACH64553.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11]
          Length = 221

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  + + +  D G+ V        A EF +     + +++D  +  + 
Sbjct: 1   MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHS-IDLVLLDVMLPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R         +  L    D   M+ G +AGA+ F+ KPFN   L   +  + + 
Sbjct: 60  GYQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRR 118

Query: 121 QKSKDENQ 128
              + + Q
Sbjct: 119 VGLERQRQ 126


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+  R       + V  A    E   +   E   +  +ID  +  +   
Sbjct: 2   RILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGL-YFATEYPYDLAIIDLGLPEISGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                         +  L    D++  + G  AGA+ +++KPF  E +   +  L + 
Sbjct: 61  TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRR 118


>gi|54302379|ref|YP_132372.1| putative transcriptional regulator CpxR [Photobacterium profundum
           SS9]
 gi|46915801|emb|CAG22572.1| putative transcriptional regulator CpxR [Photobacterium profundum
           SS9]
          Length = 222

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD   ++ ++   + ++ G+ V        A  + +   + + +++D  +  + 
Sbjct: 1   MSNILVVDDDVMLCELLTEVLSEEGYDVHYIHDGESALTYMQAHSV-DLVLLDVMLPNID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPF    L   +  + + 
Sbjct: 60  GLQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRR 118

Query: 121 QKSKDENQFLD 131
              + + Q L+
Sbjct: 119 VGLERQRQGLN 129


>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    + ++     ++ G+ V +A    EA +   +      +++D  M G  
Sbjct: 1   MK-LLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        DV +  L  +      I+G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GLTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRR 119

Query: 121 QKSKDE 126
             + D+
Sbjct: 120 SGASDQ 125


>gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 227

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   ++      L   +G +     +  EA    E     + +++D ++ G+ 
Sbjct: 1   MK-VLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASP-FDLVLLDLNLPGLD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+MP    + V  L      +  + G   GA+ +L+KPF    L+  ++ L 
Sbjct: 59  GLEVCRRLRRMPGNQPL-VLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|294776755|ref|ZP_06742219.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294449410|gb|EFG17946.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1316

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+++ +  +R +     +D  F V +A    EA +  E     + ++ D  M     
Sbjct: 1063 KKILIIEDNEDLRMLIAESLSDE-FQVMQAGDGVEALKLIE-HTDFDLIISDIMMPNKDG 1120

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++     + + V  L  +   E  I G  +GA+ +  KP +   L+ +++ + +
Sbjct: 1121 ISLCNDIKGDMNTSHIPVILLTAKTSLESKIEGVDSGADLYFEKPVDLTYLKLSIQNIFR 1180

Query: 120  MQKSKDE 126
             ++   E
Sbjct: 1181 NRRQLKE 1187


>gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+     R++   L    GF V  A +  EA     ++  P+ +++D  M  +   
Sbjct: 784 RILIVEDVEDNRRLLFELLAQVGFEVRTADNGVEAISLW-QQWHPHLILMDMLMPVMNGS 842

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++    G    +  +      +  +A  + G + F+ KPF  + L   + +   +
Sbjct: 843 QATRQIKATQEGEKTVIIAITANAFSDDQLAAIKVGCDDFITKPFREQILFEKIAQHLGV 902

Query: 121 QKSKDENQFLDAI 133
           +   +E Q ++ +
Sbjct: 903 RYRYEEEQTINEV 915


>gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
 gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    VR +         +    A +  +A         P+ +++D  +  +    
Sbjct: 9   ILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAV-MSAASGSPDIILMDLGLPDMDGV- 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++++   +   +  +    D    +    AGA+ +L KPF+ E L   +R   +  +
Sbjct: 67  DVIKKIRTWSVAPIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARLRSTLRRVQ 125


>gi|94263701|ref|ZP_01287509.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
 gi|93455900|gb|EAT06059.1| PAS:GGDEF:EAL:Response regulator receiver [delta proteobacterium
           MLMS-1]
          Length = 833

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D   ++R +       +G+          A E  ++   P   +ID  M G+    
Sbjct: 3   ILVADDDPVIRMMLTTQLQGWGYQPLAVADGQAAWEIMQQPDAPRLALIDWMMPGLDGLT 62

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+       ++  L  +     +I+G  AGA+ ++ KP +   L   +R   +  
Sbjct: 63  LCRRIREQARLPAPYLIMLTSKSTPADVISGLEAGADDYITKPHHASELHARIRAGLRSI 122

Query: 122 KSK 124
           + +
Sbjct: 123 EQR 125



 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG---FMVFEATSVCEAREFCE-KELLPNYLVIDESM 56
           M  +LL++       + R    +     F +  A S+  A      +E++P+ +++D ++
Sbjct: 146 MPLVLLIEDDPGETTLIRRQLTERHTDAFALHSAASMAAATRLLTGEEVVPDVVILDLNL 205

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                 I  V +     D  +  L    + E       AGA+ FL K  +  TLR A+R 
Sbjct: 206 PDSAG-IRTVERCRSLCDSPIVVLSGNDEPEARRLALEAGADDFLAKGGDGPTLRRALRY 264

Query: 117 LPQMQKSKDENQFLDAI 133
                +   + +   A+
Sbjct: 265 AIIRHRRDSDMRLAAAV 281


>gi|75763996|ref|ZP_00743615.1| Transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488517|gb|EAO52114.1| Transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 156

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++ +       + + EA +   A E   +    + +++D  M G   +
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDY-DLILLDLMMPGKDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+        +  L  + +    + G   G + +++KPF+   +   ++ + + 
Sbjct: 65  EVCKGVREK---KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121


>gi|332977318|gb|EGK14106.1| transcriptional regulatory protein CpxR [Psychrobacter sp.
           1501(2011)]
          Length = 223

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL D    +  +      + G     A    +  +  +     + +V+D  M  V 
Sbjct: 1   MTHILLGDDDTELSDLLVEYLTNHGIKCDCAYDGEQVLQKLKTNSY-DLIVLDIMMPKVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +RQ+P  T   V  L  + D    I G   GA+ ++ KP N   L   +  + + 
Sbjct: 60  GL-SVLRQLPTLTQTPVIMLTAKGDEIDRIIGLELGADDYIAKPCNPRELLARINAVIKR 118

Query: 121 QKSKDEN 127
             ++  +
Sbjct: 119 TTAQATD 125


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           +LVD    +  + R +  D G+    A    E       E  P+ L++D  M G+  F  
Sbjct: 1   MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEK-PDLLLLDVMMPGMNGFDV 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             R    G  + + +L  + D      G +AG + +++KPF+ + L   +    +  K
Sbjct: 60  CRRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHK 117


>gi|251788984|ref|YP_003003705.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247537605|gb|ACT06226.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 2/132 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +    +   ++ GF V        A +   ++     +V+D S+  +   
Sbjct: 2   RLLLVEDHPELAHWLKKALSEVGFAVDLVGDGVAA-DQLLQQEAYTLVVLDVSLPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G ++ V  L    +    + G   GA+ +L KPF    L   +R L +  +
Sbjct: 61  ALLARLRKRGQNLPVLLLTARAEVADRVKGLNLGADDYLTKPFELAELEARLRALLRRSQ 120

Query: 123 SK-DENQFLDAI 133
            +  E Q L A+
Sbjct: 121 GQIQEVQRLGAL 132


>gi|284035957|ref|YP_003385887.1| response regulator receiver protein [Spirosoma linguale DSM 74]
 gi|283815250|gb|ADB37088.1| response regulator receiver protein [Spirosoma linguale DSM 74]
          Length = 247

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +R+    L    G+ V  A    +     +K   P+ ++ D  M  +   
Sbjct: 4   RILVIEDVTQIRENIAELLTMSGYEVQMAADGVKGITLAQK-WSPDLILSDIMMPDMDGH 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VR  P    V   +L  + D   +      GA+ +L KPF    L  A+      
Sbjct: 63  QVLKSVRASPTLAHVPFVFLTAKSDMLDLRYSMNLGADDYLTKPFRSSELLKAIESRLAR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 IQQQ 126


>gi|218676439|ref|YP_002395258.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32]
 gi|218324707|emb|CAV26330.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32]
          Length = 221

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G+ V        A EF +   + + +++D  +  + 
Sbjct: 1   MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPV-DLVLLDVMLPNLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I   R++       +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 118

Query: 121 QKSKDENQFLDA 132
              + + Q + +
Sbjct: 119 VGFERQRQSMAS 130


>gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
 gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + +  +      GF +  A    +A E  + E     +++D ++    
Sbjct: 1   MIRILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSED-FQLVILDVTLPDGN 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++      ++ V +L      E+++ G   GA+ ++ KPF    L   +R + 
Sbjct: 60  GFELFEEIKAR---KELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVI 116

Query: 119 QMQKSKDENQF 129
           +     +EN+ 
Sbjct: 117 RHTGILEENRQ 127


>gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536]
 gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli]
 gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536]
          Length = 239

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 5   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM   + + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRYIRQM--TSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121

Query: 120 MQKSKDENQFLDA 132
            Q++  +N  L +
Sbjct: 122 RQEAMGQNILLAS 134


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPY-DLVLLDLGLPRRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKD 125
           Q  + 
Sbjct: 119 QSGRS 123


>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
 gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +LLVD    + +V   +     + +  A +   A E  +KE  P+ +++D  + 
Sbjct: 1   MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKES-PDLVILDVMLP 59

Query: 58  --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                E    +R+    + V +  L  + +      G   GA+ +L+KPF+   L   ++
Sbjct: 60  LIDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVK 116

Query: 116 ELPQMQKSKDE 126
            L +    K++
Sbjct: 117 ALLRRSFDKEQ 127


>gi|121998680|ref|YP_001003467.1| response regulator receiver protein [Halorhodospira halophila SL1]
 gi|121590085|gb|ABM62665.1| response regulator receiver protein [Halorhodospira halophila SL1]
          Length = 125

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    +      L    GF V  A    +A E  E   +P+ +++D  M      E
Sbjct: 5   ILIVDDEDNIVLSLEFLMKQAGFEVRTAQDGEQAIEALEA-RIPDLVLLDVMMPRKDGYE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +RQ      + V  L  +    +   G   GA+ ++ KPF+ + +   ++ + 
Sbjct: 64  VCQEIRQRSEWAHLPVVMLTAKGRDVEREKGLAMGADDYITKPFSTQEVVETVQHIL 120


>gi|332703492|ref|ZP_08423580.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio africanus str. Walvis Bay]
 gi|332553641|gb|EGJ50685.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio africanus str. Walvis Bay]
          Length = 477

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 48/129 (37%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD     R + R +  D G+ V EA     A         P+ +++D  +  +  
Sbjct: 13  RSVLVVDDEPGHRLMVRAVLEDNGWRVAEAADGGSALRILRSGPAPDVVLLDMRLPDMDG 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    L   + V  L         +   + GA  +L KP + + L   + +  Q  
Sbjct: 73  LAILRSLRELRPGLPVVMLTAFGSVGSAVEAMKKGAYDYLTKPADNDELEAVLDKAWQYG 132

Query: 122 KSKDENQFL 130
           +   EN+ L
Sbjct: 133 QLLRENERL 141


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+         E  E C  E   + +++D ++ G+    
Sbjct: 3   ILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENY-DLILLDLNLPGIDGLE 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +     T+  V  L   V  +  + G   GAN +L KPF+ E L   +R L + +  
Sbjct: 62  ILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFI 121

Query: 124 KD 125
           ++
Sbjct: 122 QE 123


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ + +A    EA E   KE   + L++D  M  + 
Sbjct: 5   MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEIL-KENEVHLLIMDVMMPRLD 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  GIRATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 122


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
             L+VD    + +V         F V  A     A +   +E+ P+ +++D  + G   +
Sbjct: 17  RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLA-REVDPDVVILDIGLPGVDGI 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R   + +D +V  L         I G   GA+ ++ KPF+   +   +R + + 
Sbjct: 76  EVCRQLR---VFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRR 132

Query: 121 QKSKDE 126
            +   E
Sbjct: 133 PRRAPE 138


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D  + +R +      + G    +     +  EF +   + + +++D  M  +   
Sbjct: 4   KILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDV-DLIILDIMMPKMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++       + +  L  + +    I G  +GA+ +L KPFN   L   ++   + 
Sbjct: 63  QACLKIREE-KSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119


>gi|255013833|ref|ZP_05285959.1| two-component sensor histidine kinase [Bacteroides sp. 2_1_7]
          Length = 878

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+V+ +  +      L N   + +  A +  E  E    E +P+ ++ D  M  +
Sbjct: 625 MRPSILIVEDNADISYYIGRLLNGA-YQIIYAQNGAEGLEIA-AEQMPDLILTDLMMPEM 682

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   VR+  +   + +  +  +   ++ + G   GA+++L KPFN E L   + +L
Sbjct: 683 DGYELCRRVRESEVLNHIPIIIITAKSGGKERVCGLEVGADAYLEKPFNAEELNIRITKL 742

Query: 118 PQMQKSKDE 126
            + ++   E
Sbjct: 743 LEQRRLLRE 751


>gi|255035279|ref|YP_003085900.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948035|gb|ACT92735.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1404

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
            L+VD    +R+    +F    + +FEA S  E  E   K  LP+ ++ D  M G   +E 
Sbjct: 1139 LVVDDDPEIRQYLSTVFAGK-YKIFEAGSGEEGLELVRKH-LPDIVISDVMMGGISGIEL 1196

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               ++     + + V  L      +  + G   GA+  + KPF+   L   +  + + + 
Sbjct: 1197 CRQMKLDMALSHIPVILLTASTSQDVRLKGIEGGADDHISKPFDNGILVARVASILRNRN 1256


>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
 gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +         + V +  +  +A +  EKE   +  ++D  +  +  F
Sbjct: 4   NILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKED-IDLAILDVMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L    +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  DICQKIREN---HHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRR 119

Query: 121 QKSKDEN 127
               ++ 
Sbjct: 120 VTKYNQQ 126


>gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e]
 gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland
           1988]
 gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL
           R2-561]
 gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S]
 gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161]
 gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
 gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e]
 gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes str. 1/2a F6854]
 gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL N3-165]
 gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes F6900]
 gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
 gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
 gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes J2818]
          Length = 220

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ +    +  V      + G+ V  A +  EA    +KE   + +++D  M  + 
Sbjct: 1   MEKILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKET-FDLIIMDIMMPSMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     +   +  +    + +  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GYTLTELIRS---TSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLL 116

Query: 119 QMQKSKDENQFL 130
           +     +  + +
Sbjct: 117 RRVNQSETKKQI 128


>gi|332306725|ref|YP_004434576.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174054|gb|AEE23308.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 331

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD      +V + +  D  + +  A S  EA    E+E LP+ +++D  M G+  
Sbjct: 9   QKVLIVDDEPANLRVLKKILGDL-YRLTFAKSGEEALRLVERE-LPDLILLDVMMPGMTG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++Q PL   + V ++    D      G   GA  ++ KP +   ++  +R    
Sbjct: 67  FDVCQALKQNPLSKGIPVMFVTALSDDVDEAKGFDVGAVDYITKPVSPAVVKARVRTHLS 126

Query: 120 MQKSKDENQF 129
           + ++ DE + 
Sbjct: 127 LVQA-DELRR 135


>gi|322805225|emb|CBZ02789.1| two-component system response regulator QseB [Clostridium botulinum
           H04402 065]
          Length = 223

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   KE   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERR 127


>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
           with baes [Clostridium sticklandii DSM 519]
 gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Clostridium sticklandii]
          Length = 227

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + +VD    +R +        G+      S  +      +E +P+ LV+D  M+G+ 
Sbjct: 1   MKHIFIVDDEKRIRDLIEMYLKKEGYNTTTFES-ADGVLSAIREFMPDLLVLDIMMQGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++     V + ++    D    I G   GA+ +L KPF+   L   ++ + 
Sbjct: 60  GLDLCKEIRKISE---VPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTIL 116

Query: 119 QMQKSKDE 126
           +      E
Sbjct: 117 KRTTKSSE 124


>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
 gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
          Length = 1044

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+VD + + RKV        G+    A +  EA +    E     +++D  M  +  
Sbjct: 919  KRLLVVDDNEVNRKVACGFLRKLGYEADTAENGQEALDAVL-EKDYGLILMDCQMPVMDG 977

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++ +P G  + +  +              AG + +  KP  RE L+  +    
Sbjct: 978  YEATRQIKALPKGKYLPIIAVTANAMEGDRDKCLAAGMDDYTTKPIRREKLQELLNHWL 1036


>gi|302851080|ref|XP_002957065.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis]
 gi|300257621|gb|EFJ41867.1| hypothetical protein VOLCADRAFT_98081 [Volvox carteri f. nagariensis]
          Length = 2041

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE-FCEKELLPNYLVIDESMEGVLE- 61
            +L VD   + + V   +    G+         EA +  C  E +P+ +++D  M  +   
Sbjct: 925  ILSVDDEEVNQIVLEEILTSTGYHFARCMDGLEALDWLCASETMPDLILLDCMMPNMSGH 984

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F A +R++  G  + V  +  + D + ++ G R+G+N F+ KP+ RE L   +    ++
Sbjct: 985  EFCATLRKVIPGNVLPVIMVSAKSDEDNIVEGLRSGSNDFVRKPYRREELLARIETQLRL 1044

Query: 121  Q 121
            +
Sbjct: 1045 K 1045


>gi|270295880|ref|ZP_06202080.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
 gi|270273284|gb|EFA19146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D20]
          Length = 1354

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  +R+  R    D  F +  A           +E +PN +V D  M  +    
Sbjct: 1104 LLVVEDNQDIREYIRQSLGD-DFDILTAEDGSRGWTLA-QERIPNIIVSDIMMPVMDGIQ 1161

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V+     + + V  L  +        G  AGA+S+L KPF+ + L   +  L + +
Sbjct: 1162 LCRLVKDDIRTSHIPVILLTAKDSLHDKEEGYTAGADSYLTKPFSAKLLHSRINNLLEAR 1221

Query: 122  KSKD 125
            K   
Sbjct: 1222 KKLA 1225


>gi|256391988|ref|YP_003113552.1| response regulator receiver modulated serine phosphatase
           [Catenulispora acidiphila DSM 44928]
 gi|256358214|gb|ACU71711.1| response regulator receiver modulated serine phosphatase
           [Catenulispora acidiphila DSM 44928]
          Length = 538

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGV-- 59
            +L+VD +   R V        G  V EA    EA +       LP   V+D  +  +  
Sbjct: 13  RVLVVDDNAANRYVFAQWLRRGGHDVQEAADGAEALDLLAGAGPLPEVAVLDVVLPDMTG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            E    +++     D+ V ++        +   G   GA+++L KP + E L   +  + 
Sbjct: 73  FELCRIIKKADATADIPVVHVSASAISVAERAQGLEGGADAYLTKPVDPEELLATITAVL 132

Query: 119 QMQKSKDENQFLDA 132
           +  +++   Q L  
Sbjct: 133 RYTRARRTAQNLAE 146


>gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A +  +      ++   + +V+D  + G     
Sbjct: 7   ILIVDDDREIRELLASYLEKNGMRTSLAANGRQ-MRTVLEQGSVDLIVLDLMLPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRA-GKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPAN 130


>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +    GF  F   +  +A +  +K + P+ +++D  + G   L
Sbjct: 4   RILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQK-VNPDLVLLDLMLPGKDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R++     V +  L  + D   ++ G  +GA+ ++ KPF  + L   +R   ++
Sbjct: 63  EVCREIREISS---VPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRI 119

Query: 121 QKSKD 125
            + + 
Sbjct: 120 SEPQA 124


>gi|27366393|ref|NP_761921.1| Two component response regulator [Vibrio vulnificus CMCP6]
 gi|27362594|gb|AAO11448.1| Two component response regulator [Vibrio vulnificus CMCP6]
          Length = 304

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD +    K+   L  + G++V  A S   A   C+K+  P+ +++D  M      E
Sbjct: 10  ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKK-PDLILLDIMMPEVDGYE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE---LP 118
               +++ P   D+ V +L      +  +   + G   ++ KPF    +   +R    L 
Sbjct: 69  LCRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAGLV 128

Query: 119 QMQKSK-DENQFLD 131
            +Q++  ++N+ L 
Sbjct: 129 TLQRALIEQNEQLK 142


>gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia
           enterocolitica W22703]
          Length = 670

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    + ++        G+     T+  E      +   P  +++D  + G   +
Sbjct: 474 TVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSP-PAIILLDLMLPGSDGI 532

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +DV +  +  + +    + G   GA+ ++ KP++   +   ++ + + 
Sbjct: 533 SICREIR---RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 589

Query: 121 QKSKDEN 127
            + + E 
Sbjct: 590 CQQQREQ 596


>gi|329924374|ref|ZP_08279491.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328940725|gb|EGG37042.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 1021

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+VD   +  +V   +     + V  ATS  EA    +     + ++ D  M  +   E
Sbjct: 698 LLIVDDDPVNLQVLEAILPPDEYEVTMATSGKEALAVLDA-KAWDLVISDIMMPQMSGYE 756

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    T++ V  L      + + +G  AGAN ++ KP     +R  +  L  ++
Sbjct: 757 LTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEALEIRSRIEALTTIK 816

Query: 122 KSKDENQFLDA 132
           ++  E   L+A
Sbjct: 817 RTVREQLRLEA 827


>gi|317477826|ref|ZP_07937013.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316906025|gb|EFV27792.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 1347

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +    +   + + F +  A++  EA +    EL+P+ +V D  M  +     
Sbjct: 1102 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKI-SELMPDIIVSDVMMPEMDGNEL 1159

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               V+     +D+ +  L      E  + G   GA+ ++ KPFN E L   MR+L  + K
Sbjct: 1160 CRWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDLSK 1219

Query: 123  SKDENQFLD 131
             +     +D
Sbjct: 1220 KRKAKSLID 1228


>gi|313114522|ref|ZP_07800036.1| putative KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623145|gb|EFQ06586.1| putative KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +        G+    A++   A         P+ +++D  +  
Sbjct: 1   MNKPSILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +R +   +++ +  L    +    I     GA+ +L KPF+ + L   +R   
Sbjct: 60  IDG-IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQ 118

Query: 119 QMQKSKDEN 127
           +       +
Sbjct: 119 RRLNLLASD 127


>gi|303258341|ref|ZP_07344344.1| DNA-binding response regulator ColR [Burkholderiales bacterium
           1_1_47]
 gi|330999877|ref|ZP_08323578.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302858787|gb|EFL81875.1| DNA-binding response regulator ColR [Burkholderiales bacterium
           1_1_47]
 gi|329573562|gb|EGG55164.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+ +  +R           +         +A          + +V+D  + G+ 
Sbjct: 1   MPTILIVEDNEDIRLNLVEYLESKNYQTDNTDDGLKALALTIVNKY-DLIVLDIMIPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G    +  L  +   +  I G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GLRLCRELRSR--GNTTPIIILSAKDSTDDRIMGLSEGADDYIVKPFSLAELLLRIQAVL 117

Query: 119 QMQKSKDE 126
           +   + +E
Sbjct: 118 RRSSTPEE 125


>gi|298383847|ref|ZP_06993408.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298263451|gb|EFI06314.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1433

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
              +L+++  + +R+  +    + G  F V  A       E        + ++ D  M G+
Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKART-YDADLIICDVLMPGM 1227

Query: 60   LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              F     ++     + + +  L      EK + G  AGA++++ KPF+ + L   +  L
Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287

Query: 118  PQMQKSKDE 126
             + +    E
Sbjct: 1288 IEQRDKLRE 1296


>gi|294979306|pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
 gi|294979307|pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
           C-Di-Gmp
          Length = 459

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V  A     A     ++ LP+ +++D  M G+  F
Sbjct: 4   RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-LPDIILLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         I G  +GA+ FL KP +   L   +R L + 
Sbjct: 63  TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KLVIDELRQREA 134



 Score = 71.8 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +    +                +   +A          + ++++ + +     
Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA--KISAGGPVDLVIVNAAAKNFDGL 211

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +R       + V  ++   D  +M+     G N  L +P + + L   ++   Q 
Sbjct: 212 RFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271

Query: 121 QKSKD 125
           ++  D
Sbjct: 272 KRYTD 276


>gi|291534308|emb|CBL07420.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538051|emb|CBL11162.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 235

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R           + V++A    E  E  E     +  ++D  M  +   
Sbjct: 5   NILIVEDDKEIRDGIEIFLKSQNYNVYKAADGIEGLEIIES-KEIHLAIVDIMMPRMDGV 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  V  L  + +    + G   GA+ ++ KPF    L   +    + 
Sbjct: 64  TMTLKLRE-HHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQIRR 120


>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
 gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A +  EA      +     +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++   +++ +  L  + D    I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 249

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  V        G  +  A    EA +   ++L P+ +++D  +  V    
Sbjct: 22  VLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSF-RQLRPDLVLLDIHLPKVDGV- 79

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R +   +DV V  +    D    +   R GA+ +++KPFN   +   +R + +  ++
Sbjct: 80  DVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQA 139

Query: 124 K 124
           K
Sbjct: 140 K 140


>gi|253570047|ref|ZP_04847456.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840428|gb|EES68510.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1433

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
              +L+++  + +R+  +    + G  F V  A       E        + ++ D  M G+
Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKART-YDADLIICDVLMPGM 1227

Query: 60   LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              F     ++     + + +  L      EK + G  AGA++++ KPF+ + L   +  L
Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287

Query: 118  PQMQKSKDE 126
             + +    E
Sbjct: 1288 IEQRDKLRE 1296


>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   +       F V EA    +  +  EK    +  V+D  + G+ 
Sbjct: 1   MRRILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEK-FSIDLAVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L         I G   GA+ +++KPFN   L   ++ + 
Sbjct: 60  GFKVCDELRKR--YPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAIL 117

Query: 119 QMQKSKDE 126
           +    + E
Sbjct: 118 RRTADESE 125


>gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
 gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
          Length = 227

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + R+     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 4   KIAVVEDEEALSVLLRYNLESEGYEVETILRGDEA-ELRLQERVPDLLILDWMLPGVSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   ++ + + 
Sbjct: 63  ELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122

Query: 121 QKSK 124
            K +
Sbjct: 123 AKPE 126


>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
 gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A +  EA          +  +ID S+    
Sbjct: 1   MKRIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAAL-AGNKFDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     D+ V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTVCTEIKE---TQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A +  EA          +  +ID S+    
Sbjct: 1   MKRIFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNK-FDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     D+ V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTVCTEIKE---TQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|160945542|ref|ZP_02092768.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443273|gb|EDP20278.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii
           M21/2]
          Length = 236

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +        G+    A++   A         P+ +++D  +  
Sbjct: 1   MNKPSILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAI-MMTTSHNPDIMLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +R +   +++ +  L    +    I     GA+ +L KPF+ + L   +R   
Sbjct: 60  IDG-IEVIRSVRTWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQ 118

Query: 119 QMQKSKDEN 127
           +       +
Sbjct: 119 RRLNLLASD 127


>gi|29349586|ref|NP_813089.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341496|gb|AAO79283.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1433

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
              +L+++  + +R+  +    + G  F V  A       E        + ++ D  M G+
Sbjct: 1172 RKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKART-YDADLIICDVLMPGM 1227

Query: 60   LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              F     ++     + + +  L      EK + G  AGA++++ KPF+ + L   +  L
Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287

Query: 118  PQMQKSKDE 126
             + +    E
Sbjct: 1288 IEQRDKLRE 1296


>gi|323171898|gb|EFZ57542.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
           LT-68]
          Length = 461

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDE 126
             K E
Sbjct: 124 SMKKE 128


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    V         + GF V  A +  E  +        + L++D  +  +   
Sbjct: 7   KILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANK-FDLLILDIMLPEMNGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR     T V + +L      E +  G  +GA+ +L KPF    L   ++ L + 
Sbjct: 66  EICKAVR--EENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRR 123

Query: 121 QKSKDEN 127
            ++ + N
Sbjct: 124 SRNFNSN 130


>gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL++    +  +  +     GF V  A+   +     +  + P+ +++D  +     L
Sbjct: 5   KVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQA-MTPDLVILDLMLPVIDGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P   +  +  L    +    I G   GA+ ++ KPF  + L   ++ L + 
Sbjct: 64  EVCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRR 123

Query: 121 QKSKDENQ 128
            ++ ++++
Sbjct: 124 SQAGEQSR 131


>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 268

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L  +    +R+V        GF V       EA ++ +     + +++D  M G+   
Sbjct: 2   RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDY-DVVILDIMMPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G    V  L         + G  AGA+ +L KPF    L   +R L + 
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118


>gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
 gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
          Length = 243

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+   +    GF    A S  EA     +    + +++D  M GV + 
Sbjct: 15  KVLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALA-QNRKFDLILLDIMMNGVDDG 73

Query: 63  IAHVRQMPL-GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +R +   G D+ +  L    +    + G   GA+ ++ KPFN   L   ++ L +  
Sbjct: 74  FDAIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRN 133

Query: 122 KSKD 125
           K   
Sbjct: 134 KKAA 137


>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 233

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +++VD    +  +      + GF V +A +  +A +  E E   + +++D  +
Sbjct: 1   MKKMNDKIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESEN-FDLMILDIML 59

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
           E +  F     +R+        +  L   +D    I G   GA+ ++ KPFN   +   +
Sbjct: 60  EDMDGFSVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARV 116

Query: 115 RELPQMQKSKDENQFLD 131
           +   +  +  ++ + + 
Sbjct: 117 KTQLRRSQKYNKTEKIQ 133


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K         G+ V          +   +    + +++D  +  + 
Sbjct: 1   MSKVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNY-DVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  +         ++G   GA+ +L+KPF  E L   +R L + 
Sbjct: 60  GLEVARRLRES-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118

Query: 121 QKSKDE 126
              + E
Sbjct: 119 IAIETE 124


>gi|58583493|ref|YP_202509.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58428087|gb|AAW77124.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 281

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 50  VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 108

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  +S
Sbjct: 109 AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 168

Query: 124 KDEN 127
            +E 
Sbjct: 169 SNEQ 172


>gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR
 gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis]
          Length = 242

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+ D    + ++ +       + + EA    +A  +  +  + +  +ID  M  +  
Sbjct: 3   KTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPV-DLAIIDIMMPALDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F   ++++     + V  L  +      I G   GA+ F+ KPFN       ++   + 
Sbjct: 62  F-QLIKRLTNEYKLPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRR 119


>gi|302875981|ref|YP_003844614.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307686697|ref|ZP_07629143.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578838|gb|ADL52850.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D +  +R++   L    G+ V EA    +A      +   + +++D  M    
Sbjct: 1   MRNILIADDNDEIREIVGVLLESEGYNVIEAVDGEDAINKV--DGSIDLIILDVVMPKKT 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +      +   + +L  +           AG++ +L KPF+   L   ++ L + 
Sbjct: 59  GFKACIEIREKTSA-PILFLTAKSQDSDKCMAFSAGSDDYLSKPFSYTELVSRVKALLRR 117

Query: 121 QKSKDENQFLD 131
                  + +D
Sbjct: 118 YYVYKGKETID 128


>gi|254785354|ref|YP_003072783.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685987|gb|ACR13251.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 563

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     R++   +  D G    EA    +A E    ++  N +++D +M  + 
Sbjct: 1   MK-ILVVDDYPQNRELLLMILEDEGHSCVEAADGIQACELFRADMDINLILMDVNMPLMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++Q      V + ++    + E ++    AG + F+ KP N   L   +    
Sbjct: 60  GITATRVIKQESEERFVPIIFVTALDNTEILVRCLDAGGDDFVPKPVNETVLMAKIDAHA 119

Query: 119 QMQ 121
           + Q
Sbjct: 120 RAQ 122


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|254419790|ref|ZP_05033514.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185967|gb|EDX80943.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 238

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD    +R +        GF   +A     A     +    + +V+D ++       
Sbjct: 10  LLVVDDDRDIRNLLSEHLEQHGFRTVKAADGR-AMRAALEAGPVDLVVLDLNLPDEDGLS 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R     +   V  L    D    I G   GA+ ++ KPF    L   +R + + 
Sbjct: 69  LCRAIRA---TSRTPVIMLTARGDPIDRIVGLEMGADDYMAKPFEPRELVARIRTVLRR 124


>gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 225

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + +         G+ V    +  EA          + +V+D  +  + 
Sbjct: 1   MTTVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVRG---VDLVVLDLGLPDMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  V +  L    D   M+ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 58  GLDVAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117

Query: 121 QKSK 124
           Q ++
Sbjct: 118 QAAE 121


>gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
 gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
          Length = 231

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +      +  G+ V +A    EA +  +K  + + L+ID  M  + 
Sbjct: 1   MYNILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKV-DLLIIDVMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRATLKIREK-QNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRR 118

Query: 121 QKS-----KDENQ 128
                   + ENQ
Sbjct: 119 YTQLGSTVEKENQ 131


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +      +D G++V  A    E   +       + +V+D  +  +   
Sbjct: 2   RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEG-HYLGDSEPYDAVVLDIGLPKMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G  + V  L     +   + G  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 123 SKDENQF 129
              +++ 
Sbjct: 121 GHAQSEL 127


>gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces
           bikiniensis]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+   ++R+        +G+ V  A       E   +E   + +++D  + G   +
Sbjct: 2   TVLLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELF-REGRHDLVLLDVMLPGLDGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  +    D   +++G  AGA+ +++KP +   L   +R L + 
Sbjct: 61  GLCRRIRETATD---PILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 117


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLV+ + +  +V      + G M+  A +  +A E   +E+  + +++D  M  +  
Sbjct: 1905 KRVLLVEDNELNSRVVLGYLEESGVMLDMAENGQQALEKV-QEVHYDVVLMDLQMPIMDG 1963

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +     + +  +      E       AG N ++ KP + + L   M+   
Sbjct: 1964 ITATRKIRAVFDEKTLPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHM 2022



 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
             +L+VD S+I R+   ++  + G    +  +  EA E            + L+++  + G
Sbjct: 1760 RVLVVDDSNIARRAIVYMLKEIGVQCDDVGAPIEALECIREGNGASTNYDVLLMERYLAG 1819

Query: 59   VL--EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            V   + I  +++     ++    +    D EK +       +  L KP +  +LR A+
Sbjct: 1820 VDCLDTIRKIKKESSNKNLTSIIVSSFSDEEKQLLSVDRDIDDVLDKPVDLSSLRQAL 1877


>gi|299069602|emb|CBJ40874.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
           CMR15]
          Length = 245

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLSQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         DV V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122

Query: 122 KS 123
           ++
Sbjct: 123 QA 124


>gi|262173309|ref|ZP_06040986.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           MB-451]
 gi|261890667|gb|EEY36654.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
           MB-451]
          Length = 376

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +   R +   L     + +  ATS  +A   C K+  P+ +++D  M  +   
Sbjct: 6   TILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQK-PDLVLLDIMMPEMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +   P   D+ V +L  +   E    G   GA  ++ KP +   L    R   ++
Sbjct: 64  EVCQRMGADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRTHLRL 123

Query: 121 QKS----KDENQFLD 131
           +++     ++N+ L+
Sbjct: 124 RQAMKLLAEQNETLE 138


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L +D    +  V +      G+ VF  T+   A     K L P+ +++D  + G+ 
Sbjct: 1   MK-ILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTF-KSLKPDLVILDLMLPGLS 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                + +R +     V +  L  +V+ +  + G   GA+ +L KPF+   L   ++ + 
Sbjct: 59  GEEICSKIRAISK---VPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAIL 115

Query: 119 QMQK 122
           +  K
Sbjct: 116 RRTK 119


>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R          GF V EAT+  EA +   ++ + +  ++D  + G+ 
Sbjct: 4   MSKILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTV-DIALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GLEVCKAIRK--ENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|126660463|ref|ZP_01731572.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
 gi|126618276|gb|EAZ89036.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
           domains) with Response Regulator Receiver modulation
           [Cyanothece sp. CCY0110]
          Length = 608

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD +    +V   +    G+ V +AT    A     K L P+ +++D  M      +
Sbjct: 26  ILIVDDTIENLRVLSSILTAQGYNVRKATGGHMAL-KVVKTLPPDLIMLDIMMADLNGYD 84

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q P   D+ V +L    D    +     G   ++ KPF  E +   ++    ++
Sbjct: 85  VCEQLKQNPRTADIPVIFLSALDDVFDKVKAFEMGGVDYICKPFQMEEVLVRVKNQLALR 144

Query: 122 KSKDENQFLD 131
            ++ E   L+
Sbjct: 145 TAQKEVYQLN 154


>gi|118580077|ref|YP_901327.1| two component sigma54 specific Fis family transcriptional regulator
           [Pelobacter propionicus DSM 2379]
 gi|118502787|gb|ABK99269.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Pelobacter propionicus DSM 2379]
          Length = 462

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 2/133 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R+    L    G+    A    +A    +   L + ++ D  M G+
Sbjct: 1   MKTRILIVDDELSMREFLSILLEGEGYETVVAAHAEQALSLLDSG-LFDLVISDVQMPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R   +     V  +      E+ +   + GA  ++ KPF  E ++  +R   +
Sbjct: 60  DGIELLSRIKTVSPGTAVLMMTAYCAAEQAVEAMKLGAYDYISKPFKVEEIKVLIRNALE 119

Query: 120 MQKSKDENQFLDA 132
               K EN  L  
Sbjct: 120 KCDLKRENSVLKE 132


>gi|87119492|ref|ZP_01075389.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Marinomonas sp.
           MED121]
 gi|86164968|gb|EAQ66236.1| Hybrid signal transduction histidine kinase and
           diguanylatecyclase/phosphodiesterase [Marinomonas sp.
           MED121]
          Length = 560

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+VD     R   +      G+    EA +   A E   K    + +++D  M  +  
Sbjct: 4   KILIVDDYEDNRYTLKRRLKRDGYKECDEAENGQIALEMMSK-KQYDLILLDLMMPIMDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  + H++       + V  +    D EK+  G   GA  +L KPFN   L+  ++   +
Sbjct: 63  FEVLEHMKLKDEFRHLPVIMISAADDLEKIAQGIALGAEDYLPKPFNPIILKARVKSALE 122

Query: 120 -MQKSKDENQFL 130
              +S D+   L
Sbjct: 123 KRSRSLDQINAL 134


>gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1406

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+    + +++D  M  +  
Sbjct: 1285 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDLSVVLMDIMMPEMDG 1344

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1345 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWMR 1404


>gi|237726037|ref|ZP_04556518.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229435845|gb|EEO45922.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1408

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 2   RLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTQQTI 127


>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
 gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
 gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
 gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 268

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|146300865|ref|YP_001195456.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146155283|gb|ABQ06137.1| histidine kinase [Flavobacterium johnsoniae UW101]
          Length = 1344

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+++ ++ +RK      +D+ + V+EA +  E  + C +++ P   V D  M  +   
Sbjct: 1099 KILVIEDNNELRKYLVDYLSDY-YKVYEAENGSEGLKIC-RQIKPILCVTDVMMPVMDGL 1156

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   ++     + + V  L    +    + G   GA+ +L+KPF    L+  +  + + 
Sbjct: 1157 EFCRELKNDEFISHIPVVMLTALSENMDKVKGYDTGADGYLVKPFEPLLLKTVIENMIKS 1216

Query: 121  QKSKDE 126
            +    +
Sbjct: 1217 RLELKQ 1222


>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
 gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  +      G+ +  AT   E   F       + +V+D  +  +   
Sbjct: 2   RVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEG-HFLGSTESYDAIVLDLGLPEIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L     +   +AG  AGA+ ++ KPF  E L   +R L + 
Sbjct: 61  TVLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRR 118


>gi|302548928|ref|ZP_07301270.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302466546|gb|EFL29639.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1440

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             LL+VD          H     G  V  A +  E  E  E+    + +++D  M  +   
Sbjct: 1290 RLLIVDDDIRNVFALTHALGRVGITVRYAENGREGLEVLERSPDVSLVLMDIMMPEMDGY 1349

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +R  P    + +  L  +           +GAN ++ KP N + L  A+ +L   
Sbjct: 1350 ETIRTIRNTPRLAHLPIIALTAKAMPGDRDKAIDSGANDYVPKPVNIDRLLTAICDLLDP 1409

Query: 121  QK--SKDENQFLDA 132
            Q    + E + + A
Sbjct: 1410 QHDCPEPEQERVAA 1423


>gi|299145583|ref|ZP_07038651.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298516074|gb|EFI39955.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1330

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    +   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180

Query: 120  MQKSKD 125
             ++   
Sbjct: 1181 NRELLR 1186


>gi|294806721|ref|ZP_06765549.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294446075|gb|EFG14714.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1212

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1035 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1092

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    +   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 1093 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1152

Query: 120  MQKSKD 125
             ++   
Sbjct: 1153 NRELLR 1158


>gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
 gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F++KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 SRGGETEQIE 131


>gi|262408078|ref|ZP_06084626.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645070|ref|ZP_06722796.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|262354886|gb|EEZ03978.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639576|gb|EFF57868.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1329

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    +   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180

Query: 120  MQKSKD 125
             ++   
Sbjct: 1181 NRELLR 1186


>gi|148256093|ref|YP_001240678.1| response regulator PleD [Bradyrhizobium sp. BTAi1]
 gi|146408266|gb|ABQ36772.1| response regulator receiver modulated diguanylate cyclase
           [Bradyrhizobium sp. BTAi1]
          Length = 466

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IA 64
           VD      K+     +   F V  A++  EA + C++    + +++D  M  +  F    
Sbjct: 2   VDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAEC-DIILLDVMMPDMDGFEVCR 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
            ++  P    + V  +         + G  AGA+ FL KP +   L   +R L +++   
Sbjct: 61  RLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLTRLKMMT 120

Query: 125 DENQFLD 131
           DE +   
Sbjct: 121 DELRMRA 127



 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61
            +LLVD      +    +       V    +  EA     E       + +D      L 
Sbjct: 151 RILLVDDRPSSYERLGPMLAAE-HSVDVEPNPSEAVFNAAEGNYDLVIVSLDLDDFDGLR 209

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + +R +     V +  +  E +    +  G   G N +LL+P ++  L    R   + 
Sbjct: 210 LCSQLRSLERTRHVPILAI-AEAENNTRLLRGLEIGVNDYLLRPVDKNELMARARTQIRK 268

Query: 121 QKSKDENQ 128
           ++  D  +
Sbjct: 269 RRYTDHLR 276


>gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  V        G  +  A    EA +   ++L P+ +++D  +  V    
Sbjct: 22  VLVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSF-RQLRPDLVLLDIHLPKVDGV- 79

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R +   +DV V  +    D    +   R GA+ +++KPFN   +   +R + +  ++
Sbjct: 80  DVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQA 139

Query: 124 K 124
           K
Sbjct: 140 K 140


>gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 777

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+       +        GF V  A     A +   ++  P+ +++D  +     
Sbjct: 552 KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQ-LHRQWAPDLVLLDVMLPKLSG 610

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E ++ +R     +D  V  +    D  + +   R GA+ +++KP++ + +   +  + +
Sbjct: 611 IEVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 667

Query: 120 M 120
            
Sbjct: 668 R 668


>gi|85706910|ref|ZP_01038000.1| response regulator [Roseovarius sp. 217]
 gi|85668521|gb|EAQ23392.1| response regulator [Roseovarius sp. 217]
          Length = 421

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD S + R++       +GF V EA S   A   C  E  P+ ++ D  M G   
Sbjct: 15  RRVLVVDDSRLQRRILSASLQRWGFEVQEADSGDAALILCRDEP-PDLVMSDWMMPGLSG 73

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R+M   +  +   L  + D +++  G  AGA+ FL KP N   LR  +     
Sbjct: 74  LEFCKRFREMSRDSYGYFILLTSKSDKDEVALGLDAGADDFLTKPVNAAELRARISAGAR 133

Query: 117 LPQMQKSKDENQFL 130
           + +M++   E   L
Sbjct: 134 ILRMERELTEKNRL 147


>gi|332882289|ref|ZP_08449917.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332679673|gb|EGJ52642.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1362

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLE 61
             +L+V+    +R+     F    + V E ++  EA ++  +     + +V D  M  +  
Sbjct: 1092 RILVVEDETTIRRYLHGEFAGE-YHVSECSNGQEAWDYLIQNVEKVDLVVSDVMMPVMDG 1150

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++       + V  L  + +    + G   GA++++ KPFN + LR     L +
Sbjct: 1151 ITLCRKIKGSFNTNHIPVILLTAKSEDADRLEGLSTGADAYMSKPFNIDILRQTAENLLK 1210

Query: 120  MQKSKD 125
             ++   
Sbjct: 1211 NKRRLQ 1216


>gi|330878943|gb|EGH13092.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 254

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R           F V  A       +   ++   + +V+D  +     F
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      ++ V  L         + G   GA+ +L KPF    L   +  + + +
Sbjct: 71  ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +LL + + + +++   L   FG  V  A +  +A     +    + +++D  M  +  F 
Sbjct: 1131 ILLAEDNIVNQRLAVRLLERFGHRVTLAENGLQAV-AASETKDFDLILMDVQMPHMSGFE 1189

Query: 64   A----HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A     +R+  L     +  +      +       AG + +L KP N + LR  + +  
Sbjct: 1190 ATNTIRIREKALNKHTPIIAMTAHALQKDREKCLEAGMDDYLSKPINADQLRSQIEKFL 1248



 Score = 68.7 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEGVL 60
            L++D +   RKV   +  ++G     A S   A         ++     + +D  + G  
Sbjct: 984  LIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLRAASLRKHPYECIFMDAQLNGRD 1043

Query: 61   EFI--AHVRQMPLGTDVFVYYL---LM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             F+    ++Q     D  ++ +        D E   +      + +L KP +   +  A+
Sbjct: 1044 GFLVAEAIKQDTTIGDASIFMMICGSGQRGDPENRSSVI----SGYLTKPISPLEMLEAL 1099

Query: 115  R 115
            +
Sbjct: 1100 Q 1100


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      +   + +++D  +     L
Sbjct: 2   RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPY-DLVLLDLGLPRRDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 61  DVLRTLRAR--GHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 118

Query: 121 QKSKD 125
           Q  + 
Sbjct: 119 QSGRS 123


>gi|300022943|ref|YP_003755554.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524764|gb|ADJ23233.1| integral membrane sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 881

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R+    +     + V EA     A E       P+ +++D  + G   LE
Sbjct: 495 LLVVDDEPDMRRYLVTML-RETYRVIEAEDGISALEKARAAH-PDLILLDVMLPGVSGLE 552

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + +  L    D E  I   + GA+ FL+KPF+   +R  +    +  
Sbjct: 553 VCRSLKERTETRAIKIIVLTARADEEAKIVALKNGADDFLIKPFSGIEVRSRIANFIRAA 612

Query: 122 KSKDENQF 129
           + + + Q 
Sbjct: 613 QLERDLQR 620


>gi|241888541|ref|ZP_04775849.1| response regulator SaeR [Gemella haemolysans ATCC 10379]
 gi|241864808|gb|EER69182.1| response regulator SaeR [Gemella haemolysans ATCC 10379]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    + ++ +      G+ +  A    EA E  ++    + ++ D  M  + 
Sbjct: 2   MNKILLVDDEIEITEINKRYLEQGGYDIDIANDGKEALEKYKRNKY-SLIITDIMMPNMD 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +        L T+    ++  +      I     GA+ +++KPF+   L   +R + + 
Sbjct: 61  GYDLISEVQYLDTEQPFLFITAKTTEPDKIYALSMGADDYIVKPFSPRELVLRVRNILRR 120

Query: 121 QK 122
            +
Sbjct: 121 IE 122


>gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
 gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  + R       +    A +   A         P+ +++D  +  +   
Sbjct: 5   KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVS-YHPDVVILDLGLPDMDGV 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   + + +  +    + +  +    AGA+ +L KPF+ +     +R   +   
Sbjct: 64  -DIIKKIRSFSTMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRSH 122

Query: 123 SK 124
           ++
Sbjct: 123 TE 124


>gi|156936560|ref|YP_001440474.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534814|gb|ABU79638.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
           BAA-894]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V         + V  A       E  ++   P+ +++D  +  +  
Sbjct: 4   KRVLVIEDDADAASVLEAYLRRENYDVAIAGDGRSGLEKAQR-WKPDLVLLDVMLPVMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +A +R     +DV V  +    D    I   R GA+ +++KP++   +   ++ + +
Sbjct: 63  TEVLATLR---RSSDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|51473435|ref|YP_067192.1| response regulator PleD [Rickettsia typhi str. Wilmington]
 gi|51459747|gb|AAU03710.1| response regulator protein [Rickettsia typhi str. Wilmington]
          Length = 450

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALSILKKEK-IDTILLDVMMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T + V  +    D +  + G  AGA+ FL+KP N   L   ++ L 
Sbjct: 60  GFEVCKIIKTDPGTTHIPVVMITALSDIDDRVKGLEAGADEFLIKPINDTALFVRLKSLS 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E    
Sbjct: 152 KKILLINDDVVQAKNIKQILVKLTKYVKVISNSDE-LDII-NEYTPDLVIISSTLENEDP 209

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +   + E     ++ G   G N + + P     L   +R   +
Sbjct: 210 LRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFIYPIEENELLARIRTQLR 269

Query: 120 MQKSKDENQ 128
            ++ +D  +
Sbjct: 270 RKQYQDNLR 278


>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
 gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  + +F+  +  +A +  EKE L +  ++D  +  V  F
Sbjct: 4   NILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKL-DLAILDVMLPDVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICRQIREKHNF---PVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 119


>gi|329962431|ref|ZP_08300431.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328529987|gb|EGF56875.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1484

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
            LLV+ +  +R   R +F    + + EA    +      K  LP+ +V D  M     +  
Sbjct: 1222 LLVEDNSELRLFLRSIFAPE-YRIVEAADGMQGWSKALK-FLPDIIVSDVMMPEKDGISM 1279

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-QMQ 121
            +  +R     + + +  L  +   E  + G   GA+ ++ KPF+   L+  +R L  Q Q
Sbjct: 1280 MRELRADMTTSHIPIVLLTAKTSIESKLEGLEYGADDYITKPFSATYLKARVRNLLVQRQ 1339

Query: 122  KSKD 125
            K ++
Sbjct: 1340 KLQE 1343


>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETAL-EKDFDLILLDLKLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG---- 58
            +L+V+    +  V R    + G+    A     A E  E E   + +V+D  + G    
Sbjct: 2   RILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETY-DLVVLDLMLPGIAGG 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R+    +DV +  L       + + G  AGA+ +L+KPF+   L   +R L 
Sbjct: 61  GMEVCRVMRRHS--SDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALM 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    + +         GF V  +    E  +   KE   + +++D  + G  
Sbjct: 1   MCRVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDW-DIILLDLMLPGLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      +  +  L         ++G  +GA+ ++ KPF  E L   +R L 
Sbjct: 60  GMEVCRRIRA---AKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALF 116

Query: 119 QMQKSKDEN 127
           +  + K E 
Sbjct: 117 RRMEGKKEE 125


>gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R + R      G  + EA    +A E C K+   + +++D  M  + 
Sbjct: 1   MSRLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKC-KQAAYDLIIMDIMMPNLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + V+++       V  L    +    I G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GF-SAVKEIRKDASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKR 118

Query: 121 QK 122
             
Sbjct: 119 YH 120


>gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
 gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    + ++     ND G++V++A++  EAR   +    P+ +++D  M G   
Sbjct: 3   QKILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVN--PDLMILDVMMPGQDG 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            EF   +R +       + +L  +V    +I G   G + +L KPF+   LR  +    +
Sbjct: 61  FEFCKEIRSV---VSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLR 117

Query: 120 M--QKSKDENQFL 130
              ++S  E  FL
Sbjct: 118 RNERQSSREQSFL 130


>gi|218437187|ref|YP_002375516.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
 gi|218169915|gb|ACK68648.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7424]
          Length = 322

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++   + ++ G+    A S  +A E  +    P+ +++D  M  +    
Sbjct: 18  ILIVDDISKNLQLVVEILDEVGYATTFAISGKQALERVKIAH-PDLILLDLMMPEMNGLQ 76

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ + +L    + E ++   + GA  ++ KPF    L   ++   +++
Sbjct: 77  VCEKLKSDANYAEIPIIFLTASDEQEDLLQAFKMGAVDYVTKPFKSGELLARVKTHLELK 136

Query: 122 KSKDENQF 129
           ++KD  + 
Sbjct: 137 RTKDALKM 144


>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF+V  A     A     + + P+ +++D  + G+   
Sbjct: 5   TILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALA-RSVKPDLVILDIMLPGLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   T V+V  L    D    + G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 64  EVC-RQLHRETTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNR 122

Query: 123 SKD 125
           +  
Sbjct: 123 AAR 125


>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D      K+   +  + G+ V +A       +  E +  P+ +++D  M      +
Sbjct: 3   ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVE-QYNPDLILLDVMMPKTNGFD 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +DV + +L      +  + G + G + +L+KPF    L   +  + + +
Sbjct: 62  VCRQIR---RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRR 118

Query: 122 KS 123
            S
Sbjct: 119 NS 120


>gi|86146655|ref|ZP_01064976.1| probable transcriptional regulator SyrB [Vibrio sp. MED222]
 gi|85835502|gb|EAQ53639.1| probable transcriptional regulator SyrB [Vibrio sp. MED222]
          Length = 221

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G+ V        A EF +   + + +++D  +  + 
Sbjct: 1   MSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPV-DLVLLDVMLPNLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I   R++       +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  G-IQVARRICQRFATPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 118

Query: 121 QKSKDENQFLDA 132
              + + Q + +
Sbjct: 119 VGFERQRQSMAS 130


>gi|323463385|gb|ADX75538.1| two-component response regulator SaeR [Staphylococcus
           pseudintermedius ED99]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ +  F   G+ V  A++  EA +        + +VID  M  + 
Sbjct: 1   MTHILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN--VDVMVIDIMMPEMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +         G D+   YL  +   +  I G   GA+ ++ KPF+   L   ++ L   
Sbjct: 59  GYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNR 118


>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|253700815|ref|YP_003022004.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251775665|gb|ACT18246.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 452

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S    K+   L    G+ V  A +  +A E    E  P+ ++ D  M  +  F 
Sbjct: 14  ILIVDDSPTQAKLLEQLLAGEGYRVAVARNGSDALEQI-NERRPDMVISDILMPEMDGFE 72

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+M    +  +  L    D   ++    AGAN F+ KP++ + L   +R + Q +
Sbjct: 73  LCRRVREMESIKETPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRAILQGE 132

Query: 122 KS 123
           ++
Sbjct: 133 RA 134


>gi|188591971|ref|YP_001796569.1| multi-site sensor histidine kinase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938345|emb|CAP63330.1| putative multi-site Sensor histidine kinase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1478

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D +  +R   R L +  G  V  A    EA     +   P  +V D  M       
Sbjct: 673 VLVADDNDDLRDYMRRLLSAAGHRVVVAADG-EAALAQARAHAPALVVSDVMMPRLDGFG 731

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R      +  V  L      E  ++G  +GA+ +L+KPF+   L   +    ++ 
Sbjct: 732 LLRALRADAELRETPVLLLSARAGEEARVSGLGSGADDYLVKPFSARELLARVASNLRLS 791

Query: 122 KSKD-ENQFLDAI 133
           + +    + L  +
Sbjct: 792 ELRRATERRLQEL 804



 Score = 91.8 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
            ++L+V+    VR     +    G+ V  A     A    E+ +  + L  D  M G L  
Sbjct: 1198 TVLVVEDDEDVRATVVEMLASLGYHVLRARDAHSALAIVERGVPVDLLFSDVVMPGPLRS 1257

Query: 61   -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAG-ARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      DV V +     D   +  G   AG    L KP+  E L   +R + 
Sbjct: 1258 TELARKLR--ERLPDVGVLFTSGYADSVIVHDGRLDAGI-ELLSKPYTHEALARKVRHVL 1314

Query: 119  QMQKSK 124
              +  +
Sbjct: 1315 ANRGQR 1320



 Score = 66.8 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 3/112 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L VD   +VR     +   +G    EA S   A        + + L+ D ++ G     
Sbjct: 1344 VLCVDDDALVRAGTAEVLRAYGLHALEADSEAAALAML-AGNVVDVLLTDVALAGDSGVE 1402

Query: 64   AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +        + V +      D          GA + L KP+  + L   +
Sbjct: 1403 LALAARARHPGLGVVFATGYALDLTPAQRA-GLGAVAVLRKPYPPQRLLEVL 1453


>gi|209550745|ref|YP_002282662.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536501|gb|ACI56436.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 444

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R+         GF V   ++     E       P  +V D  M G+   
Sbjct: 5   KILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYS-FPGVVVSDIRMPGMDGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   L  +V V  +    D +  +   R GA  F+ KPF  E L   +R   + + 
Sbjct: 64  TLMQKIRELDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAMERRG 123

Query: 123 SKDENQFLDAI 133
              EN+ L A+
Sbjct: 124 LVLENRLLKAV 134


>gi|147678593|ref|YP_001212808.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274690|dbj|BAF60439.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 453

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    VR++ + +  D G  V  A +  EA E       P+ +++D  M  + 
Sbjct: 2   MSKVLVVDDEESVRQMLKDVLEDDGHQVMLAENGREALEKI-TVRHPDAVLLDIRMPEID 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G+ V +  +      +  I   + GA  +++KPFN + L   +++   M
Sbjct: 61  GLAVLDIVRREGSTVPIILMTAFGITDMAIQAIQTGAYDYIIKPFNIDELLLTVKKAVNM 120

Query: 121 QKSKDENQFL 130
           Q    E   L
Sbjct: 121 QDLVTEVAAL 130


>gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 257

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL +D    + KV +      G+ +  ATS+ EAR    +E  P+ +++D  +      
Sbjct: 33  TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRL-QETPPDLVILDLMLPDGDGL 91

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +   L   + V  L         + G   GA+ +++KPF    L   ++   +
Sbjct: 92  EFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 148


>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+V+ +   + V R +    G      A +  EA +   +E   + +++D  M  +  
Sbjct: 821 RILIVEDNPTNQMVARAVLKKLGLTNSTVANNGREALDILAREN-FDLVLMDCRMPEMDG 879

Query: 62  FIAHVRQMP-----LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           F A  R            V +  +             +AG + +L KP   + L   +  
Sbjct: 880 FEATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEEIINR 939

Query: 117 LPQ-----MQKSKDEN 127
             +     ++ ++ E+
Sbjct: 940 QLRPAQGGLKNARQED 955


>gi|291568215|dbj|BAI90487.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 394

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD      ++   +  + G+ V +A +   A +  E E  P+ +++D  M  +    
Sbjct: 13  ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAET-PDLILLDIMMPELDGYQ 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
              +++  P   ++ + +L    D    +     G   ++ KPF+ + +   +R      
Sbjct: 72  VAKYLKDDPTTREIPIIFLSALSDTMDKVLAFDLGGVDYITKPFHVQEVLARVRTQLTIS 131

Query: 119 -QMQKSKDENQFLD 131
            Q Q+   +N  L+
Sbjct: 132 QQKQQLITQNHELE 145


>gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ R      G+ + EA +   A E  E E  P+ +++D  + G+   
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEK-PDLVLLDLGLPGMSGH 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ V  L    D   ++     GA+ ++ KPF    L   +R   + + 
Sbjct: 66  ELLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 123 SKD 125
            + 
Sbjct: 126 QQQ 128


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD    +    ++     GF     ++              + +++D  +   G LE
Sbjct: 5   ILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPA-DLVILDIGLPDIGGLE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ    + V + +L    D    I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 64  LCRLIRQ---TSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRR 119


>gi|167755291|ref|ZP_02427418.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
 gi|167704230|gb|EDS18809.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
          Length = 228

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    + ++ +   +D G+    A     A E  E     + +++D  +    
Sbjct: 11  MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYN-QFDLILLDIMLPEIN 69

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R +     + V +L  + D +  + G + GA  +++KPF    L   +  + 
Sbjct: 70  GYELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVL 125

Query: 119 QMQK 122
           +   
Sbjct: 126 RRYH 129


>gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
 gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
          Length = 240

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+ D    + +         G+ V +A    +A +  E E + + L++D  M  + 
Sbjct: 10  MYSILVCDDDKEIVEAIEIYLTQEGYQVLKAYDGMQALKMLETETV-HLLILDVMMPRLD 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 69  GIRATLKIRETNS-IPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRR 127


>gi|295136473|ref|YP_003587149.1| two-component system sensor histidine kinase/response
            regulator,hybrid ('one-component system') [Zunongwangia
            profunda SM-A87]
 gi|294984488|gb|ADF54953.1| two-component system sensor histidine kinase/response
            regulator,hybrid ('one-component system') [Zunongwangia
            profunda SM-A87]
          Length = 1356

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L++D +  +     ++  D  F +  +    +  +   K  +P+ ++ D  M  +    
Sbjct: 1101 ILIIDDNPEILMYLDNILKD-DFDLIHSHDGEDGIKKAIKH-VPDLILSDVMMPKLDGIQ 1158

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +++  + + V +  L  + + E + +G   GA+ ++ KPF+   L+  ++ L + +
Sbjct: 1159 LCNQLKKHHITSHVPIILLTAKSNTESISSGFSEGADDYVTKPFHPSLLKTRIKALLENR 1218

Query: 122  KSKDE 126
            K   E
Sbjct: 1219 KKLQE 1223


>gi|307731198|ref|YP_003908422.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585733|gb|ADN59131.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 246

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   +  + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRRR 121


>gi|326319281|ref|YP_004236953.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376117|gb|ADX48386.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 248

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++        G             ++  +    + +V+D  + G    
Sbjct: 11  RILVVDDDPEIRELLCDYLRAAGLRPAAVADGEAMWQWLARHTA-DLVVLDLMLPGTDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R +   T + V  L         I G   GA+ +L KPF+   L   +  + +  +
Sbjct: 70  -ALCRALRECTHIPVVMLTARGALLDRILGLEMGADDYLPKPFDPRELLARINVVLRRAR 128

Query: 123 S 123
            
Sbjct: 129 Q 129


>gi|260172821|ref|ZP_05759233.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
 gi|315921107|ref|ZP_07917347.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694982|gb|EFS31817.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1358

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L+V+ +  +         D  + V   T+  EA       LLPN ++ D  M  +  +
Sbjct: 1108 TILIVEDNRDLNNYICSCLADK-YNVIGVTNGEEALAKAI-NLLPNLIITDLMMPKMNGI 1165

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
            E I  +++    + + +  +  +     +  G  AGA+ ++ KPF+   L+  +  + Q 
Sbjct: 1166 ELIRQLKKDMNSSHIPIIMVTAKTGTNDIKEGYAAGADEYITKPFDASILKVRVDNIIQS 1225

Query: 120  MQKSKD---ENQFLDAI 133
             ++ KD   +N  L+++
Sbjct: 1226 RERLKDLYSKNFSLESL 1242


>gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
 gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
          Length = 231

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 2/134 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      +  F + +A    +A E  +     + +++D  M  + 
Sbjct: 1   MK-ILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                         + +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRR 119

Query: 121 QKSK-DENQFLDAI 133
             +   E++  + I
Sbjct: 120 TSALTKESESAEEI 133


>gi|288942573|ref|YP_003444813.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Allochromatium vinosum DSM 180]
 gi|288897945|gb|ADC63781.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Allochromatium vinosum DSM 180]
          Length = 356

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD +     +  +      + V  AT    A +       P+ +++D  M G+  
Sbjct: 7   QTILVVDDAPANIDLLVNTLKVE-YNVKAATRGERALQIVRSGDPPDMILLDIMMPGMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +++      + V ++  ++  E  I G   GA  ++ KP +   +   +R    
Sbjct: 66  FEVCRQLKRDFTTRHIPVIFITAKIGIEDEIRGFDLGAVDYITKPISPPVVLARVRTQL- 124

Query: 120 MQKSKDENQFL 130
                D+N+ L
Sbjct: 125 --ALYDQNREL 133


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G+ V       +  +    E   + +++D  + G  
Sbjct: 1   MQQILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAAL-EKNYDLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R      +  +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GLEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDE 126
           + +++ ++
Sbjct: 117 RREENTEQ 124


>gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + +       + G+ V  A    +A +   +E   + +++D  M  +   
Sbjct: 5   NILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREED-IHLIIMDLMMPNLDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++    ++ +  L  + +    I G   GA+ +L KPFN   L   +    + 
Sbjct: 63  TRATIELRREKEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIRR 120


>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+   ++R+     F    + V+EA     A E      + + +V+D  M  +
Sbjct: 1   MKRKVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSV-DLVVLDIMMPEM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +RQ    +D+ +  +   VD +  + G   GA+ ++ KPF+ + L    + L
Sbjct: 60  DGWSVCRKIRQQ---SDIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKAL 116

Query: 118 PQMQK 122
            +  +
Sbjct: 117 MKRAE 121


>gi|210621484|ref|ZP_03292655.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275]
 gi|210154741|gb|EEA85747.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275]
          Length = 234

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + K+ +              S  EA    EK+     ++ D  M G+ 
Sbjct: 1   MKKILIADDDKELCKLLQITLKSENIDSKICFSGIEAINELEKDEYIMLIL-DVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +  +   +D+ V  L  + D    + G R GA+ ++ KPFN E     +  L + 
Sbjct: 60  GF-RTLEIVRENSDIPVLMLTAKDDTSSKVKGLRLGADDYITKPFNTEEFLARVDSLIRR 118

Query: 121 QKSKDEN 127
               ++ 
Sbjct: 119 YNMNNKQ 125


>gi|220926141|ref|YP_002501443.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219950748|gb|ACL61140.1| GAF sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1839

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           +    G  V  AT+  EA    E+      +++D  M  +  
Sbjct: 1719 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEERSDIAIVLMDIMMPEMDG 1778

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R  P    + +  L  +           AGA+ +L KP N E L  A+R    
Sbjct: 1779 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1838

Query: 120  M 120
             
Sbjct: 1839 R 1839



 Score = 96.0 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    +A     +   P  + +D  +  +L   
Sbjct: 1453 LLIVEDDPHYTRVLMQLARDTGFKVLTANRGADALALARR-YHPTAVSLDVFLPDMLGWT 1511

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             ++H++Q P    + V  +      E    G   GA +FL KP   E L      ++   
Sbjct: 1512 VLSHLKQDPATRHIPVQIVT---LDEDRRHGLARGAFAFLSKPTRPEDLGSALQRIKSFA 1568

Query: 119  --QMQKS 123
              + ++ 
Sbjct: 1569 APRRRRL 1575



 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V+ +   R     L       +  A +   A     +E   + +V+D  +  +  
Sbjct: 1573 RRLLIVEDNPAERLGVSTLLGHQDIDIVTAETGAGALAAL-REHAIDCVVLDLKLPDMSG 1631

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R+     D+ V          + +  +      A S ++K   + E L  
Sbjct: 1632 FEVLERLREDDSLADLPVVVFTGRALSPEEDARLHAL---ARSVVVKGVESPERLLD 1685


>gi|160888170|ref|ZP_02069173.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492]
 gi|270297069|ref|ZP_06203268.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478932|ref|ZP_07938079.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|156862305|gb|EDO55736.1| hypothetical protein BACUNI_00578 [Bacteroides uniformis ATCC 8492]
 gi|270273056|gb|EFA18919.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904909|gb|EFV26716.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 375

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       + + L  +  F +  A++  +A E  EKE  P+ +++D  M  +  F
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVEKEN-PDLVLLDVMMPDMSGF 69

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++  P   D+ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 70  EVAQHLKSNPNTADIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129

Query: 121 QKSKD 125
             +K 
Sbjct: 130 VAAKR 134


>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  ++L D    +R V  ++  + G+    A    EA    E E  P+ +++D  M    
Sbjct: 1   MK-IMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAEN-PDLVILDVMMPKLN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +  A +R+   G++V +  L  + D      G +AGA+ +L+KPF+   L   +  L 
Sbjct: 59  GFDVCAQLRK--KGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALL 116

Query: 119 QMQKSKD-ENQFLDAI 133
           + +  +  E +  ++I
Sbjct: 117 RRRDHQAGETEERESI 132


>gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321]
 gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321]
          Length = 232

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    EA E  ++    + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKR-KAIDLIITDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           D    ++  +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRL 121

Query: 122 KSKDENQFLD 131
               E + + 
Sbjct: 122 HRGGETEVVS 131


>gi|299147304|ref|ZP_07040369.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23]
 gi|298514582|gb|EFI38466.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_23]
          Length = 1339

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +R      F D  F + E+ +  EA E   K   P+ ++ D  M  +   
Sbjct: 1084 RVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQTFK-KAPDLVISDIMMPEMDGL 1141

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1142 TLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINT 1201

Query: 120  MQKSKD 125
             Q+ + 
Sbjct: 1202 RQQLRK 1207


>gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+ D +  +R++ + L    G+ V  A +  EA E  ++      +++D  M   
Sbjct: 1   MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES--IGLVILDVEMPKK 58

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 + +RQ      V + +L           G  AG + ++ KPF+   L   ++ L
Sbjct: 59  SGIVVCSEIRQKSF---VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKAL 115

Query: 118 PQM 120
            + 
Sbjct: 116 LRR 118


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    + +         G+ V  A    E       E   + L++D  + G   
Sbjct: 25  KKILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIE-AFDVLLLDVMLPGING 83

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR     + V +  +         +AG  AGA+ +++KPF  E L   +R + +
Sbjct: 84  IEICRRVRTQ---SQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILR 140

Query: 120 MQKSKD 125
              +++
Sbjct: 141 RATTQE 146


>gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp.
            MED297]
 gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp.
            MED297]
          Length = 1090

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD           + ++ GF V  A +   A +   K+     +++D  M  +  +
Sbjct: 965  KVLVVDDDLRNTYTLSKILSNEGFRVSIADNGQLALDKLSKDSNIALILMDIMMPVMDGY 1024

Query: 63   IAHVRQMPLGTDV-FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                R     ++   +  L  +   E       AGA+ +L KP + E L   +R
Sbjct: 1025 ETIARIRAQHSETLPIIALTAKAMPEDRQKCLSAGADDYLPKPVDLEQLLVKVR 1078



 Score = 83.3 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+++                G          +A  +C ++  P  +++D  +  +    
Sbjct: 805 LLIIEDDPSFAAYLEKAARKQGMSALVTGYGLQALSYCLRKP-PGAVILDLGLPDIDGCE 863

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
            +  ++ +    ++ V+ +    D        + GA  +L KP N E L
Sbjct: 864 ILQVLQNLQHHRNIPVHVISALDDPA---RAMQLGAEEYLAKPINLEQL 909


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  + +    +  F    A +  +  +       P+ +++D  + G+ 
Sbjct: 1   MKKILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHF-WKPDLIILDIMLPGLN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                + +R+    + V +  L      E +  G  +GA+ +L KPF    L   +R L 
Sbjct: 60  GIQVCSKIRE---TSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLL 116

Query: 119 QMQKSK 124
           +  +++
Sbjct: 117 RRIENQ 122


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +        + +++D  M     
Sbjct: 20  KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKV-STYEVDLMILDIMMPKRNG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 79  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 135

Query: 120 M 120
            
Sbjct: 136 R 136


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+V+    + +          + V          +    +   + +++D  +    
Sbjct: 1   MANILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTY-DLIILDIMLPHIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +  + +    + G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLEICRRIRQQYT---TPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAIL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|238025638|ref|YP_002909870.1| Two component transcriptional regulator, AraC family protein
           [Burkholderia glumae BGR1]
 gi|237880303|gb|ACR32634.1| Two component transcriptional regulator, AraC family protein
           [Burkholderia glumae BGR1]
          Length = 259

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD     R +        GF VF A+   +        + P+ +++D +M    
Sbjct: 1   MNRVLVVDDHLDDRSLLAEFLRQQGFRVFMASDGLDGLAKARV-VRPDLILMDINMPNCD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P  + V + +L      E+ +AG  AGA  ++ KPF+ E +R  +    
Sbjct: 60  GLTACRKLKCDPATSAVPLIFLTASTQPEERVAGLEAGAIDYIAKPFHFEEVRLRIAIHL 119

Query: 119 QM 120
           ++
Sbjct: 120 RL 121


>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1201

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+ D               F   V  A    EA +  ++    + +++D  M  +  
Sbjct: 1079 KTVLVADDDVRNIFSLSKALEQFNMTVIAALDGKEALQKLDENPGIDVVLLDMMMPQMDG 1138

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+     ++ V  +  +          +AGA+ ++ KP + + L   +R   
Sbjct: 1139 YETARKIREHYQWKNLPVIAVTAKAMTGDREKCIQAGASDYITKPVDIDQLISLLRVWL 1197



 Score = 81.8 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+      K         G+    A    E  +       P  +++D  +  +  
Sbjct: 810 KTILIVEDDPNFAKSLLDYARKKGYKGIVAVQGDEGLKLA-SVYNPLGILLDIQLPVMSG 868

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +  ++  P    + V+ +      +        GA  F+ KP   E L+   +++
Sbjct: 869 WEVMDALKANPKTRPIPVHIMSSH---KLKNESLLKGAIDFVDKPVAFEQLQEVFKKI 923



 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/104 (10%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              +L+V+ +    K   +    F       +++ E  +  +++ + + +++D  +     
Sbjct: 932  KKVLIVEDNPKHAKALAYFLETFNITSELKSNITEGIDALKRKEV-DCVILDMGVPDSKA 990

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103
             E +   ++ P   ++ +     +          +  A+S ++K
Sbjct: 991  YETLEVAKKDPGLENLPIIIFTGKSLSMSEELKIKKYADSIIVK 1034


>gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 305

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    ++ + P+ +++D  M G+  F 
Sbjct: 11  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDLILLDAVMPGMDGFD 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A ++       V V ++    + E ++    AG   +L KP N + LR  +R      
Sbjct: 70  TCARLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 130 RSAQSARVALDA 141


>gi|300778246|ref|ZP_07088104.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503756|gb|EFK34896.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910]
          Length = 350

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+++    +R+    +     + V +A +  +  E   +  +P+ ++ D  M     
Sbjct: 4   TKILIIEDHDDIRESTSEILELADYEVLQAKNGKQGVELAIRH-IPDIILCDIMMPELDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  + +    + +   ++  + D  ++  G   GA+ +L KPF+   L  A+    +
Sbjct: 63  YGVLYLLSKREETSLIPFIFITAKADRAEVRKGIEMGADDYLTKPFDDIELLNAIESRLR 122

Query: 120 MQKSKDE 126
            ++ + +
Sbjct: 123 KKEHQKK 129


>gi|209550328|ref|YP_002282245.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536084|gb|ACI56019.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 233

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      + GF V  A    EA+      L  + +++D  M G   ++
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +    +V +  L    +    I G  AGA+ +L KPF+   L   +  + + 
Sbjct: 73  VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V  A +  E  E    E   + +++D  +  +  
Sbjct: 3   KRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMAL-EKDFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQ 120

Query: 122 KSKD 125
             + 
Sbjct: 121 DIEA 124


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 4/124 (3%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           ++V+    + K+ R      G+ V   T   EA +  EKE LP+ L++D  + G+  F  
Sbjct: 1   MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKE-LPDLLILDVMLPGLDGFSV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +  +R+     D+ V  L  + + +  I G ++GA+ +L KPF  E L   +  + + + 
Sbjct: 60  LEEIREYIST-DLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRRKG 118

Query: 123 SKDE 126
             + 
Sbjct: 119 KVER 122


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   ++     +      + V  A     A +  E     + +++D  +  + 
Sbjct: 1   MK-ILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVET-YEYDLILLDIVLPKLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G  V +  L           G  AGA+ +++KP + E L   +R L + 
Sbjct: 59  GISLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118



 Score =  113 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD      ++ + L   +G  +       +     EK + P+ L++D  M G+  +
Sbjct: 383 KILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEK-IHPDMLILDIEMPGMSGI 441

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G +V + +L +  + E +      GA+ F+ KP     L   +    + 
Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501

Query: 121 QKSKDENQF 129
            +     + 
Sbjct: 502 VRLLKIMER 510



 Score = 85.2 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ D   I R+  ++L    G+ V    S  +A      +  P+ +++D  M G+  + 
Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQH-PDVILLDLVMPGMNGWE 1134

Query: 64   AH--VRQMPLGTDVFVYYLLME-------VDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +++     D+ +    +           E            +L KP     L  ++
Sbjct: 1135 TMAGLKKCSDTKDIPIVICSVYKSSQNNPNRQED-TNAESVKFADWLSKPVEETDLLNSL 1193

Query: 115  RELP 118
            R++ 
Sbjct: 1194 RKVV 1197



 Score = 64.1 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVLE 61
             +L+++  H +  +   LF+      F A +  EA    +K      ++     E     
Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQM 120
             +  ++Q      + V     +   +      + G   F  K     +     + +L Q 
Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQR 1324


>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
 gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
          Length = 241

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    ++ +        G   F A    +A    +   + + +++D  M  + 
Sbjct: 20  MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPM-DLMILDVMMPHLD 78

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F      R+M   +++ +  L  +   +  + G   GA+ ++ KPF+ + L      L 
Sbjct: 79  GFSVCKLAREM---SNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALL 135

Query: 119 QM 120
           + 
Sbjct: 136 RR 137


>gi|163732982|ref|ZP_02140426.1| response regulator [Roseobacter litoralis Och 149]
 gi|161393517|gb|EDQ17842.1| response regulator [Roseobacter litoralis Och 149]
          Length = 429

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD S + RK+       +G+ V EA S  EA + C     P  ++ D  M  +    
Sbjct: 25  ILVVDDSRLQRKILSSSLVRWGYDVIEAASGEEALDICIA-KRPELVISDWVMPTMDGIQ 83

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RELP 118
           F    R +   +  +   L  + +   +  G  AGA+ FL KP N   LR  +     + 
Sbjct: 84  FCKEFRALTSDSYGYFILLTSKSEKNDVAEGLDAGADDFLTKPVNGNELRARITAGERIL 143

Query: 119 QMQ-KSKDENQFL 130
           +MQ +   +N+ +
Sbjct: 144 KMQLELTQKNRVI 156


>gi|163790188|ref|ZP_02184621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159874463|gb|EDP68534.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME-- 57
           M+++L+++    + +         G+      +     E    E    + +++D  +   
Sbjct: 1   MNNILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPEL 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +RQ+   ++V +  +         ++G   GA+ +++KPF  E L   +R L
Sbjct: 61  NGIDVCRRIRQV---SNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAL 117

Query: 118 PQMQKSKDEN 127
            +  + + E 
Sbjct: 118 FRRIEIESEQ 127


>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
 gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  + +      GF V  A       E    E   + +++D  +  V 
Sbjct: 1   MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDY-DLIILDLMLPEVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VRQ     ++ +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHM 116

Query: 119 QMQK 122
           +   
Sbjct: 117 ERYN 120


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    V    +    +  + V  A+   E  +        + +++D  +     L
Sbjct: 2   RILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPY-DLIILDWMLPKQDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V  L  +   E ++AG  +G++ +L KPF    L   +R L + 
Sbjct: 61  SVLKELRNQKN--ATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRR 118

Query: 121 QKS 123
            + 
Sbjct: 119 SEQ 121


>gi|120436048|ref|YP_861734.1| two-component system sensor histidine kinase/response regulator
            hybrid [Gramella forsetii KT0803]
 gi|117578198|emb|CAL66667.1| two-component system sensor histidine kinase/response regulator
            hybrid [Gramella forsetii KT0803]
          Length = 1406

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD +  +RK  R    D  + + EA +  E  E   KE++PN ++ D  M  +    
Sbjct: 1157 ILVVDDNKDIRKFIRQSLQD-NYNIQEAENGREGFEKA-KEIVPNIIISDLIMPEMDGIE 1214

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            F  H +  P  + +    L  +   E  +    +GA+ +L+KPFN E L+  ++ +   +
Sbjct: 1215 FCHHCKNDPATSHIPFLLLTAKDSQESELVAMESGADDYLIKPFNLELLQLKLKNIITKR 1274

Query: 122  KSKDE 126
                +
Sbjct: 1275 NHLRK 1279


>gi|329960930|ref|ZP_08299209.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
 gi|328532216|gb|EGF59020.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
          Length = 229

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA          N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALRM--DIGRYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASLLKKDKKTAHVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAVRVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  +  + I
Sbjct: 123 TQQAETERAPEQI 135


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +R   R    +  + V  A    EA    +     + +++D  +     + 
Sbjct: 3   ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEY-DLVLLDIMLPKVNGIA 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    +   +  L  +      + G  AGA+ +L KPF+ + L   +R L +  
Sbjct: 62  VCKALREKS--SSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRG 119

Query: 122 KSKD 125
           K  D
Sbjct: 120 KKAD 123


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A     A     K    +  ++D  M     +
Sbjct: 11  RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKY-DLFILDLMMPKIDGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T+V +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 70  EVCRKLREK---TNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D    +R + +       + V  A     A     K    +  ++D  M     +
Sbjct: 11  RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKY-DLFILDLMMPKIDGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T+V +  L  +      I G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 70  EVCRKLREK---TNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126


>gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 219

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ +  +    + +    G++V  A    EA  F  +    + +++D  +  +  F
Sbjct: 2   KVLLVEDNIGLNASLKEILELNGYIVDGAFDADEALNFL-QNSFYDVIILDVMLPDIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    V  L  +      + G   GA+ ++ KPF  E L   ++ + +   
Sbjct: 61  TLLKLIREKGIKTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVARRSS 120

Query: 123 SKDEN 127
            +  +
Sbjct: 121 VEKSD 125


>gi|224536547|ref|ZP_03677086.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521803|gb|EEF90908.1| hypothetical protein BACCELL_01422 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1356

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+ ++ +R+  +       + VF+  +  EA E   +    + ++ D  M  +  
Sbjct: 1109 RTLLVVEDNNEIRQYLKSKLATI-YNVFDCDNGHEALEIIHR-REIDLVISDVMMPVMDG 1166

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  ++       + V  L   V    +  G  +GAN ++ KPFN + L   ++ L  
Sbjct: 1167 IELCKAIKSNIEINHIPVILLTAHVSDTHVKDGLSSGANDYVFKPFNFDLLLARIQNLLD 1226

Query: 120  MQKSKDE 126
              +   +
Sbjct: 1227 NNERLRQ 1233


>gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
 gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +  + +  F    + +  A S  EA +       P+ +++D +M G+   
Sbjct: 6   KLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKVA--CKPDLILLDINMPGMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        + +L   ++    I G +AGA+ +++KPF+ + L   +    + 
Sbjct: 63  TVCQQIREHIA---CPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRR 119

Query: 121 QKSKDEN 127
           ++ +  N
Sbjct: 120 EQRRQNN 126


>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    + +   H+ +  G+ V  A    +  E   +    + L++D  +    
Sbjct: 1   MK-ILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTY-DLLILDWMLPRKP 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +R    G +  V +L  +   +  + G  AGA+ +L+KPF    L   +R L 
Sbjct: 59  GLSICQELRSQ--GKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALL 116

Query: 119 QMQKSKDE 126
           +   +  E
Sbjct: 117 RRSAASVE 124


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    +  + R    D G+++       +A     ++   + +++D  +  V  
Sbjct: 5   KQILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKAL-LLLEQAQWDAVILDLMLPHVDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   L   + +  +         I G   GA+ +L KPF+ + L   ++ L + Q
Sbjct: 64  LEICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 123

Query: 122 KS 123
           ++
Sbjct: 124 QA 125


>gi|157803455|ref|YP_001492004.1| response regulator PleD [Rickettsia canadensis str. McKiel]
 gi|157784718|gb|ABV73219.1| response regulator PleD [Rickettsia canadensis str. McKiel]
          Length = 450

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA     KE   + +++D  M  + 
Sbjct: 1   MTTILVVDDIETNIKLLTAKLLKEYYTVLTANSGKEALAILTKEK-IDIILLDVMMSEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++     T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 60  GFEVCKRIKTNLETTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLY 119

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 120 RMKSLIDELKLRNS 133



 Score = 59.0 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  R +       +   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 152 KKILLINDDVVQAKNIRQMLLKITASIKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 208

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+    + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 209 PLRISVILRRKAKISGVVIILQIDEDGMPLVVKGVELGINDYFVYPIEESELLARIRTQL 268

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 269 RRKQYQDNLR 278


>gi|146302248|ref|YP_001196839.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156666|gb|ABQ07520.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 230

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL +       + +       F V  A +   A ++  K    +  V D  M  + 
Sbjct: 1   MKRLLLAEDDFDFAAILKQYLELHQFEVIWAENGEIALDYF-KNQTFDICVFDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + + +  ++   +L      E  I G + GA+ +++KPF  + L   ++ + + 
Sbjct: 60  GFSLAEKTITINPEIPFIFLTARKLKEDKIIGLKLGADDYIVKPFEVDELVLRLQNILKR 119

Query: 121 QKSKDENQ 128
            + K   +
Sbjct: 120 IEQKRSLE 127


>gi|154244586|ref|YP_001415544.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158671|gb|ABS65887.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 255

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R+         GF V  A S  +  +        + +++D  M G    
Sbjct: 13  RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRD-LDTLLAAEPADLILMDVHMPGEDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         +  L    D    +AG   GA+ +++KPF+   L+  +R + + 
Sbjct: 72  TLARRIRSA-AATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRR 128


>gi|194334237|ref|YP_002016097.1| response regulator receiver protein [Prosthecochloris aestuarii DSM
           271]
 gi|194312055|gb|ACF46450.1| response regulator receiver protein [Prosthecochloris aestuarii DSM
           271]
          Length = 122

 Score =  134 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L++D S  +R++  H      F V  A +   A E  E+ + P+  ++D +M G
Sbjct: 1   MKQSRILIIDDSASIRRLLAHNLGKR-FEVLVADNANHALELLEQGVTPDLAIVDVAMPG 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F  +  +++ P  + + +  L    +      G + GA+ +L KPFN E L   +  
Sbjct: 60  MDGFSLVERLKKDPSYSTIPIIMLTARDESADKEKGLKLGADDYLTKPFNTEDLADRIEH 119

Query: 117 LP 118
           L 
Sbjct: 120 LL 121


>gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++ R      GF V    +  EA     +   P+ +++D  +  +   
Sbjct: 6   RVLVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRS-RPDLVLLDVMLPDIDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +   R +     V V ++         +AG   G + ++ KPF  E L   ++ + +  +
Sbjct: 65  LLAERLVHAIGPVPVVFVTARDSTADKVAGLARG-DDYVTKPFRMEELIARIQAVLRRSR 123


>gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 225

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A S  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGERESSD 125


>gi|265752927|ref|ZP_06088496.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263236113|gb|EEZ21608.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1408

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+++    ++ +     +  G+ V  A    E  +  ++    + +++D  M      
Sbjct: 4   SILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNY-DLIILDIMMPNLDGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + V + +L         + G     + ++ KPF+   L   +  + + 
Sbjct: 63  GVCKMIRK---TSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRR 119

Query: 121 QK 122
             
Sbjct: 120 SN 121


>gi|157964306|ref|YP_001499130.1| response regulator PleD [Rickettsia massiliae MTU5]
 gi|157844082|gb|ABV84583.1| Regulatory components of sensory transduction system [Rickettsia
           massiliae MTU5]
          Length = 456

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD      K+         + V  A S  EA    +KE   + +++D  M  + 
Sbjct: 7   MTTILVVDDIEPNIKLLTAKLLQEYYTVLTANSGKEALAILKKEK-IDIILLDVMMPEID 65

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++  P  T + V  +    D +  + G  AGA+ FL KP N   L   ++ L 
Sbjct: 66  GFEVCKTIKTDPATTHIPVVMVTALSDIDDRVKGLEAGADEFLTKPINDTALFVRLKSLS 125

Query: 119 QMQKSKDENQFLDA 132
           +M+   DE +  ++
Sbjct: 126 RMKSLIDELKLRNS 139



 Score = 59.4 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++   +  K  + +       V   ++  E  +    E  P+ ++I  ++E   +
Sbjct: 158 KKILLINDDVVQAKNIKQMLLKITQNVKVISNSDE-LDII-NEYTPDLVIISSTLEN-DD 214

Query: 62  FIAH---VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R     + V +   + E     ++ G   G N + + P     L   +R   
Sbjct: 215 PLRISVILRGKAEISGVVIILQIDEDGMPLVVKGIELGINDYFVYPIEESELLARIRTQL 274

Query: 119 QMQKSKDENQ 128
           + ++ +D  +
Sbjct: 275 KRKQYQDNLR 284


>gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 229

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+   ++           G+ V    +  +A        +   L++D S+  +   
Sbjct: 2   RILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDA-HRALANDIYALLLLDISLPKMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R     + + V  L      +  +AG   GA+ ++ KPF+       +R L + 
Sbjct: 61  AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRR 118


>gi|117619167|ref|YP_854965.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560574|gb|ABK37522.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 423

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ +  V +         G  +  A     A +    E   + +++D  M  + 
Sbjct: 202 MK-ILVVEDNPQVAETIMDYLELAGHRLDCAYHGQAALQLL-AEQRFDVIIMDVMMPRLD 259

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V +L      +  +AG +AG + +L+KPF  E L   ++ L   
Sbjct: 260 GLSTVARLREQGIPTPVLFLTARDSLDDKLAGFKAGGDDYLVKPFAMEELEVRLQALALR 319


>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 235

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L++D    +R     +    GF   +A    +  E       P+ +++D  + G+ 
Sbjct: 12  MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTK-PDLVLVDLRLPGMS 70

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         +  L    D    +     GA+ +++KPF    L   +R + 
Sbjct: 71  GTEICKQLRA--ARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVL 128

Query: 119 QM 120
           + 
Sbjct: 129 RR 130


>gi|94497234|ref|ZP_01303806.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94423339|gb|EAT08368.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 236

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S++LV+    +R +      + G+ V  A+S  E     +   + + +V+D  + G   +
Sbjct: 5   SIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPV-DLVVLDVMLPGTNGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+    +DV + ++         I G   GA+ +L KPF    L   +R + + 
Sbjct: 64  DLCRQIRRK---SDVPIIFISARGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120

Query: 121 ---QKSKDENQFLDA 132
              ++  DE++  +A
Sbjct: 121 VGVERGPDEHRESEA 135


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        GF V  A S   A         P+ LV+D  +  +  F
Sbjct: 19  RVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSP-PDLLVLDVMLPDIDGF 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V   +L      E  + G   G + ++ KPF    L   +R + +   
Sbjct: 78  AVCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAG 137

Query: 123 SKD 125
           + D
Sbjct: 138 AAD 140


>gi|298208466|ref|YP_003716645.1| two-component system, transcriptional regulatory protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848389|gb|EAP86258.1| two-component system, transcriptional regulatory protein
           [Croceibacter atlanticus HTCC2559]
          Length = 236

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNDYEVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           +V + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNEEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIQAIMQRK 124

Query: 122 KSK 124
            ++
Sbjct: 125 STE 127


>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 263

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +         + GF +  A +  +  E   KE   + ++ID  +  +   
Sbjct: 33  RVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESY-DAIIIDVILPVMDGL 91

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    V  L  +      ++G   G + +L KPF    L   +  L +  K
Sbjct: 92  EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151

Query: 123 SKDENQFLDA 132
              E   L A
Sbjct: 152 VNQETVQLKA 161


>gi|125974330|ref|YP_001038240.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|256003450|ref|ZP_05428440.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|125714555|gb|ABN53047.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum ATCC 27405]
 gi|255992474|gb|EEU02566.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 2360]
 gi|316941477|gb|ADU75511.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum DSM 1313]
          Length = 363

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V   +  D  F +  AT    A +   ++  P+ +++D  M  +  F 
Sbjct: 12  ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQK-PDLILLDIYMPEMDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
               ++  P   ++ V +L    D E +  G  +G   +++KPFN   L   ++      
Sbjct: 71  LCRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHLMLK 130

Query: 119 -QMQKSKDENQFLDA 132
            Q +  K+ N+ LD+
Sbjct: 131 CQAESLKEANKELDS 145


>gi|332876711|ref|ZP_08444469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685270|gb|EGJ58109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 232

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    + G+ V  A S  EA +        + L++D  M  +  F
Sbjct: 6   RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM--DLTKFHLLLLDVMMGEISGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q+    D+ + +L         + G   GA+ ++ KPF+   ++  ++ + + 
Sbjct: 64  KMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123

Query: 121 QKSKD 125
              + 
Sbjct: 124 TAPQQ 128


>gi|327312954|ref|YP_004328391.1| response regulator receiver domain-containing protein [Prevotella
           denticola F0289]
 gi|326945707|gb|AEA21592.1| response regulator receiver domain protein [Prevotella denticola
           F0289]
          Length = 716

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +  +R   +    D  + V  A+   +  +   KE +P+ +V D  M  +   
Sbjct: 467 TVLVVDDNKDIRVYLQLTLQDT-YQVLLASDGRQGLQLA-KENIPDLIVSDVMMPVMDGL 524

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++   L   + V  L       + I G   GA++++ KPF+ + L+  +  L Q 
Sbjct: 525 ELCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKARIGNLLQN 584

Query: 121 QKSKDEN 127
           ++   + 
Sbjct: 585 RRRLHQL 591


>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 239

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A+    A +   K+L P+ +++D  +  +  
Sbjct: 12  RTILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAA-KQLRPDLVIMDIMLPVMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L         + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 71  LEATKRIVADRP-VPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 129

Query: 122 KSKD 125
           +   
Sbjct: 130 ERAK 133


>gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 236

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + ++        GF V  A S  EA     +E+ P   ++D  M G+  F
Sbjct: 10  TVLVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIA-REINPEAYILDVMMPGMDGF 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   ++ I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 69  ELLAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128

Query: 123 S-KDEN 127
           + +DEN
Sbjct: 129 AGQDEN 134


>gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 225

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A S  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKD 125
           +  + + 
Sbjct: 117 RRGERES 123


>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA     A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
 gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
          Length = 1357

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+L+V+ +  +R+          + + +A +  EA     KE     ++ D  M  +   
Sbjct: 1112 SILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIV-KEQEVGLILTDVMMPVMDGL 1169

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  + D ++ + G + GA+ ++ KPF+   +   ++ L + 
Sbjct: 1170 QLCKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFRT 1229

Query: 121  Q 121
            +
Sbjct: 1230 R 1230


>gi|220910558|ref|YP_002485869.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 7425]
 gi|219867169|gb|ACL47508.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7425]
          Length = 217

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLLVD    +  + +      G+ V  A+   EA    E + +PN ++ D  M  +  
Sbjct: 12  KKLLLVDDDPNLVLLVKDYLELQGYQVVTASHGREALRILE-QGIPNMIICDVMMPEMDG 70

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+  VR  P    + V +L  +   +  + G   GA+ +++KPF  + L   +    +
Sbjct: 71  YTFVKSVRDNPRTQWIPVLFLSAKGQIQDRVIGLNTGADVYMVKPFEPDELIAQIEASLK 130

Query: 120 MQKSKDENQ 128
             +   ++Q
Sbjct: 131 QAERMIQHQ 139


>gi|148378896|ref|YP_001253437.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931468|ref|YP_001383278.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936439|ref|YP_001386827.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288380|emb|CAL82457.1| two component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927512|gb|ABS33012.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932353|gb|ABS37852.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 223

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   KE   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDVLYKE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERR 127


>gi|317477866|ref|ZP_07937052.1| two component regulator propeller [Bacteroides sp. 4_1_36]
 gi|316906002|gb|EFV27770.1| two component regulator propeller [Bacteroides sp. 4_1_36]
          Length = 1360

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+VD    V    R L +   + V    +  +A +   +E  P+ ++ D  M G    
Sbjct: 1114 TLLVVDDDTEVAHYLRTLLSAH-YKVICRFNADDALKALHEES-PDLVLSDVVMPGKDGY 1171

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   +++      + V  +  +   E  + G   GA++++ KPF+   L   ++ L + 
Sbjct: 1172 QFCREIKEDLQLCHLPVILVTAKATVENQVEGLDTGADAYVTKPFDPAYLLALIKSLLKN 1231

Query: 121  QKSKD 125
            ++   
Sbjct: 1232 REKAR 1236


>gi|304413239|ref|ZP_07394712.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304284082|gb|EFL92475.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 239

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + GF V    +  +  +        + LV+D  + G    
Sbjct: 6   KILVVDDDVRLRALLDRYLTEQGFQVRSVANAEQ-MDRLLARESFHLLVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  +  + +    + G   GA+ ++ KPFN   L   +R + + Q
Sbjct: 65  SICRRLHNQNNPIPIIIVTAKSEDVDRVVGLEIGADDYMSKPFNPRELLARIRAVLRRQ 123


>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEFI 63
           +VD    V+          G+ V  A            E  P+ +++D +M   G LE  
Sbjct: 5   IVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAE-APDGVLLDVTMPVLGGLEVC 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +R    G  V V  L         +AG  AGA+ +L+KPF  + L   +R L + 
Sbjct: 64  RVLRA--EGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRR 118


>gi|291566666|dbj|BAI88938.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 592

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD       +   +    G+ V +A +   A     K + P+ +++D  M G+    
Sbjct: 8   ILVVDDKPENLHLLSEILMMEGYNVRKAVNGKMAL-MAVKTVPPDLILLDIMMPGMDGYQ 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V +L    D    +    +G   ++ KPF  E +   +     ++
Sbjct: 67  VCKELKNNQNLAKVPVIFLSALNDVFDKVKAFGSGGVDYITKPFQMEEVLVRVENHLMLK 126

Query: 122 KSKDE----NQFLDA 132
            ++ +    N  L+A
Sbjct: 127 AAEKKILELNTELEA 141


>gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 231

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G          EA     +    + +++D  M  +   
Sbjct: 4   RILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGN-IDLIILDIGMPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    + + + +L    +    I G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  EVCRQIRQ---TSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119

Query: 121 QKS-KDENQFLDAI 133
             +    ++   A+
Sbjct: 120 SGNGAAPDRRHAAL 133


>gi|212692221|ref|ZP_03300349.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855]
 gi|212665098|gb|EEB25670.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855]
          Length = 1408

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|34557247|ref|NP_907062.1| two-component hybrid sensor and regulator [Wolinella succinogenes
           DSM 1740]
 gi|34482963|emb|CAE09962.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes]
          Length = 372

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L VD + +   +   +     + V  A S  EA E  + E   + +++D  M  +   
Sbjct: 7   TILAVDDTEVNVDILMGILK--NYDVIPALSGKEALEIVKNEK-IDLILLDIMMPEMDGY 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + + ++  +     +  G   GA  ++ KPFN   L   +    ++
Sbjct: 64  EVCRRLKSEEATRSIPIIFITAKTTESDIKEGFERGAVDYVTKPFNPIELISRVDTHLEL 123

Query: 121 Q--KSKDENQFLDAI 133
           +  + + E +    I
Sbjct: 124 RSYQLRLEERITQEI 138


>gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1215

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+ +  +R+V        G+ V  A+   E           + +++D  M  +   
Sbjct: 864 SILVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAKA-TTTSFDLILMDLQMPRLDGV 922

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A  R    G    +  L       +       G + +L KP  +  L   + +  
Sbjct: 923 EATRRLRARGVVTPIVALTANDLDGERQRCLEQGFDDYLTKPVGQGELIQRLAQHL 978


>gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
 gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
          Length = 1234

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD S  +      L  D  ++V  A    +A    ++    + +V D  M      
Sbjct: 833 KVLVVDDSPEMLSYLSELLRD-DYVVATAVDGEQAWALLQRRP-IDVVVSDVMMPLLDGF 890

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++  P    + V  +      +  ++G  +GA+ ++ KPF+   L+  +R   +M
Sbjct: 891 GLTARIKGSPGFAHLPVILVTARGGSDACVSGLESGADDYIAKPFSPLELKARVRAALRM 950

Query: 121 QKSKDEN 127
            + + E 
Sbjct: 951 SQVQSEL 957


>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1823

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHEDVAVVLMDIMMPEMDGY 1762

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + +R+MP    + +  L  +           +GA+ ++ KP + + L   M++  +
Sbjct: 1763 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMQQWMR 1821


>gi|270294829|ref|ZP_06201030.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274076|gb|EFA19937.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1336

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +    +   + + F +  A++  EA +    EL+P+ +V D  M  +     
Sbjct: 1091 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKI-SELMPDIIVSDVMMPEMDGNEL 1148

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               V+     +D+ +  L      E  + G   GA+ ++ KPFN E L   MR+L  + K
Sbjct: 1149 CRWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDLSK 1208

Query: 123  SKDENQFLD 131
             +     +D
Sbjct: 1209 KRKAKSLID 1217


>gi|237711505|ref|ZP_04541986.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|229454200|gb|EEO59921.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1408

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + ++  +     GF V          E   +    + +++D  + G+  
Sbjct: 3   QRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEY-DLILLDVMLPGMNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    +    G    +  L  +   E+++ G + GA+ ++ KPF    L   +  + + 
Sbjct: 62  FQILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 120


>gi|153937923|ref|YP_001390256.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152933819|gb|ABS39317.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318352|gb|ADF98729.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 223

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   +E   + ++ D  M  + 
Sbjct: 1   MFRVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYRE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERK 127


>gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+   ++           G+ V  A +  +A            +++D ++  +   
Sbjct: 2   RILIVEDDAVLAAALTRALTQAGYAVDYADNGEDA-NRALSNDAYALVLLDIALPKMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R     + V V  L      +  +AG   GA+ ++ KPF+       +R L + 
Sbjct: 61  AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRR 118


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+++    V+K  R  F   GF V  A     A +  +    P  +++D  + G  
Sbjct: 1   MDRILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQA-TSPRAVLLDLRLPGKS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      +V +  L    D    +     GA+ ++ KPF+   L   +R   
Sbjct: 60  GQDICREIRGFS--PNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTAL 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score =  134 bits (338), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    ++++ +       + V  A+   E  +   K+   + +++D  M  
Sbjct: 8   MKNYHILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQS-FDLILLDVMMPN 66

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    + +   +++ +  L    + +  + G   G + ++ KPF+   L   +  + 
Sbjct: 67  LNGFEVA-KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVL 125

Query: 119 QMQKSKDEN 127
           +   ++  +
Sbjct: 126 RRSNNQSTD 134


>gi|257791925|ref|YP_003182531.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257475822|gb|ACV56142.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + ++         + V  A +     E  E+   P+ +++D  M  +  F
Sbjct: 4   TVLIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLER-KSPSVILVDLMMPEMNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +++    ++  +  +         + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 63  -DFIKEARSVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRR 119


>gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 223

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +R +  +      F      +  E     E   + + +++D  + G  
Sbjct: 1   MIKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDV-DIILLDLMLPGLK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F+  VR     + V +  +  +   + +I G   GA+ +L KPF+ + L   +  + 
Sbjct: 60  GMQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + +      +  G+ V  A     A     ++L  + +++D  + GV 
Sbjct: 1   MTHILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAA-RQLNLDLIILDWMLPGVS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L  + +    +AG  AGA+ +++KPF+ E L   +R   + 
Sbjct: 60  GLEICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRR 119

Query: 121 QKSKDENQFL 130
            K  D    L
Sbjct: 120 SKETDSADIL 129


>gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G       S  EA     +    + +++D  M  +   
Sbjct: 4   RILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGN-IDLIILDIGMPDMDGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    + + + +L    +    I G   G + ++ KPF+   L   ++ + + 
Sbjct: 63  EVCRQIRK---TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119

Query: 121 QKS 123
             +
Sbjct: 120 SGN 122


>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
 gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + LV+    +     ++    GF V        A E       P+  ++D  +  +  F
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R +     + V +L    D    + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121


>gi|189460862|ref|ZP_03009647.1| hypothetical protein BACCOP_01509 [Bacteroides coprocola DSM 17136]
 gi|189432436|gb|EDV01421.1| hypothetical protein BACCOP_01509 [Bacteroides coprocola DSM 17136]
          Length = 1327

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +++V+ +  +R       +D  + V  A +  EA +  + +  P+ ++ D  M  +   
Sbjct: 1076 RIMIVEDNASLRLFLMKSLSDI-YQVDGAENGQEAIDKIKVQ-QPDLIISDVMMSVMDGE 1133

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
                 ++     + + +  L    D + ++ G    A+ ++ KPF+   LR  +  + + 
Sbjct: 1134 TMCRTLKSDIETSHIPIILLTALGDKKDILRGLETKADMYITKPFDLMVLRANISNILEN 1193

Query: 120  ----MQKSKD 125
                 +K + 
Sbjct: 1194 GEIIRKKLQQ 1203


>gi|160882799|ref|ZP_02063802.1| hypothetical protein BACOVA_00761 [Bacteroides ovatus ATCC 8483]
 gi|156111823|gb|EDO13568.1| hypothetical protein BACOVA_00761 [Bacteroides ovatus ATCC 8483]
          Length = 1328

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    +   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180

Query: 120  MQKSKD 125
             ++   
Sbjct: 1181 NRELLR 1186


>gi|89519306|gb|ABD75783.1| putative signal transduction histidine kinase [uncultured
           bacterium]
          Length = 962

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD           +  + G  +    +  EA E  +     + +++D  M  +  
Sbjct: 843 KTILMVDDDIRNVFALSSVLEEKGMTIVIGENGKEALELLKNNPGIDLVLMDIMMPEMDG 902

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+    + + +  L  +           AGAN +L KP + + L   +R   
Sbjct: 903 YEATRQIRKQTQFSKLPIIALTAKAMKGDRQKCIDAGANDYLSKPIDIDKLLSLLRVWL 961



 Score = 94.5 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+++      K+   L  + GF    A       +  + +  P  +++D  + G+    
Sbjct: 577 LLIIEDDPKFAKILFDLAREKGFKGLIAGDGAAGLQLAD-QYSPVAIILDIGLPGMDGWA 635

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  +++ P    + V+++  +      +   + GA  +L KP   + L  A   +
Sbjct: 636 VMEKLKKNPDTRHIPVHFMSAQDTP---LEAMKMGAIGYLTKPVTLDILNDAFNTI 688



 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+V+    +R     L N     +  A +  +A    + E   + +V+D  +     
Sbjct: 697 KKLLVVEDDDTMRASMLELLNGEDVDITPAATGEKAYHLLQSE-RFDCMVLDLGLTDISG 755

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118
              +  ++     + + +     +   ++     +  A S ++K   + E L   +    
Sbjct: 756 FGLLEKIKADATMSHIPIIVYTGKDLTKEEETKLKQHAESIIIKGVKSPERLLDEVTLFL 815

Query: 119 QMQKS---KDENQFL 130
              +S   + + + L
Sbjct: 816 HRIESDLPEAQQKKL 830


>gi|319893564|ref|YP_004150439.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
 gi|317163260|gb|ADV06803.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R++ +  F   G+ V  A++  EA +        + +VID  M  + 
Sbjct: 1   MTHILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN--VDVMVIDIMMPEMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +         G D+   YL  +   +  I G   GA+ ++ KPF+   L   ++ L   
Sbjct: 59  GYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNR 118


>gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249]
 gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI+ V+ +    D    +   +   +  I G   GA+ F++KPF+   L   +  + +
Sbjct: 62  YDFISEVQYIA--PDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILR 119

Query: 120 MQKSKDENQFLD 131
                 E + ++
Sbjct: 120 RLSRGGETEQIE 131


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF V +A    +A +  E   + + +++D  M G+ 
Sbjct: 1   MQNILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEV-DLMILDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118


>gi|295135073|ref|YP_003585749.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294983088|gb|ADF53553.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 240

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLAMNEYEVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           ++ + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNEEIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124


>gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 241

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    ++++ R      G+      +   A E   +E LP+  +ID  + G   L 
Sbjct: 11  VLVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAA-EALLRETLPDLALIDWMLPGKSGLA 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R       + +  L    +    +AG   GA+ +++KPF+ + L   +  + + 
Sbjct: 70  LTGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRR 128


>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 250

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK------ELLPNYLVIDESM 56
            +L+V+   ++R +      + G+     +    A E  +       E   + +V+D  +
Sbjct: 20  RILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML 79

Query: 57  EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +        +R    G  + +  L  +      + G   GA+ +L KPF+   L    
Sbjct: 80  PQINGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137

Query: 115 RELPQMQ 121
           R L + Q
Sbjct: 138 RALIRRQ 144


>gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 227

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++ +  +           GF V  A                + +V+D  + G+   
Sbjct: 2   RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  L      +  + G  AGA+ +L+KPF    L   +  + + 
Sbjct: 61  QVCKRLRED-GRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRR 119

Query: 121 QKSKDENQFLDA 132
            +   + Q   A
Sbjct: 120 SRGSRKRQLQVA 131


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  ++++ R       + V  A +  E     +K L  + +++D  +  + 
Sbjct: 1   MTHILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLY-DLVLLDVMLPDID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     +DV +  L    + E  I G   G + ++ KPF+       +  + 
Sbjct: 60  GYSICKIIRGQ---SDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVL 116

Query: 119 QMQKSKD 125
           +   S +
Sbjct: 117 RRAASTE 123


>gi|115359360|ref|YP_776498.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170698563|ref|ZP_02889632.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171317335|ref|ZP_02906530.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172064153|ref|YP_001811804.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284648|gb|ABI90164.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|170136497|gb|EDT04756.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171097476|gb|EDT42315.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171996670|gb|ACB67588.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 246

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   E +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLE-DGAPDLIVLDLMLPGEDGLT 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|330966402|gb|EGH66662.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 254

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R           F V  A       +   ++   + +V+D  +     F
Sbjct: 12  RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQP-FDVVVLDVMLPDGDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      ++ V  L         + G   GA+ +L KPF    L   +  + + +
Sbjct: 71  ELCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128


>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
 gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R      GF V  A    E       E     L++D  + G+ 
Sbjct: 1   MRKILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEY-ALLLLDVMLPGIS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR+     +V V  +    D    I G   GA+ +++KPF+   L    R   
Sbjct: 60  GFEICREVRKS---KNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHI 116

Query: 119 QMQK 122
           Q+ +
Sbjct: 117 QIHE 120


>gi|218440881|ref|YP_002379210.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
 gi|218173609|gb|ACK72342.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
          Length = 125

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+VD S  +R++   L    G  V EA S  EA+E  +K+ +P+ ++ D  M  + 
Sbjct: 1   MITVLIVDDSASLRQILLELLEKRGINVLEAASGMEAQEVIQKQ-IPDLVITDLIMPQMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   DV V     + +      G + GA++++ KPF+   +   ++ L 
Sbjct: 60  GYELCRWIKNNPNTQDVPVLICSTKSEEFDRYWGMKQGADAYITKPFDNAEMLQTIKFLL 119

Query: 119 QMQK 122
           Q ++
Sbjct: 120 QNRR 123


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+++    ++ V +    D G+ V  A+   E  E   +E  P+ +++D  +  +  
Sbjct: 13  KTILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKF-REYHPDLILLDLMLPKMNG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+    + V +  L    D    + G  A A+ ++ KPF+   +   +  + +
Sbjct: 72  FSVCEAIRKE---SQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLR 128

Query: 120 MQKS 123
             + 
Sbjct: 129 RAEQ 132


>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
 gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 226

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +   +     GF     T   +A          + +V+D  +  + 
Sbjct: 1   MK-ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGH-DLVVLDVGLPDMS 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     +DV V +L    D    I G   G + ++ KPF+   +   +R + 
Sbjct: 59  GFDVCRALR---RYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAIL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 4/118 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LL + + I R +   L    G  V       +A E   KE   + +++D  M  +   
Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSKE-RFDLVLMDVQMPQMHGD 776

Query: 61  EFIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           E    +R    G   V +  L              AG + +L KP + + L   ++ +
Sbjct: 777 EVTRRIRAGEAGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQELERVLKRI 834


>gi|295100030|emb|CBK89119.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium
           cylindroides T2-87]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    VR +         +    A +  EA    E E  P+ L++D  +  +   
Sbjct: 5   SVLVVEDDKSVRNLIVTTLQANDYPYTSAENGKEALSKIETE-RPDVLLLDLGLPDIDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I  ++++   +++ +  +    + +  I     GA+ +L KPF+ + L   +R   + 
Sbjct: 63  IEVIKELRTWSNMPIIVISARSEDKDKIQALDMGADDYLTKPFSVDELLARLRVTQRR 120


>gi|237720705|ref|ZP_04551186.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|298484152|ref|ZP_07002318.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|229449540|gb|EEO55331.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|298269656|gb|EFI11251.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1328

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 1063 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 1120

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    +   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 1121 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 1180

Query: 120  MQKSKD 125
             ++   
Sbjct: 1181 NRELLR 1186


>gi|225572481|ref|ZP_03781345.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040053|gb|EEG50299.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
          Length = 295

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+V+    + +  +      G+ V  A S+        ++  P+ +++D ++     
Sbjct: 67  NKILIVEDDRGLAEGIKFYLEKEGYRVVMAGSLGGG-RVLYRQEKPDAVLLDLNLPDGDG 125

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   +R+    + V +  +         + G   GA+ +L KPF+   LR  +R+L +
Sbjct: 126 MSFCREIRKN---SQVPILMVTARDMETDEVMGLETGADDYLTKPFSLTVLRTRLRKLLE 182

Query: 120 MQK 122
            Q+
Sbjct: 183 RQQ 185


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++ +       + +  A+   E  +    +   + +++D  M  +  F
Sbjct: 4   NILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQS-FDLILLDVMMPNLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               + +   +++ + +L    + +  + G   G + ++ KPF+   L   ++ + +   
Sbjct: 63  EVA-KMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSN 121

Query: 123 SKD 125
            K 
Sbjct: 122 HKS 124


>gi|91772885|ref|YP_565577.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91711900|gb|ABE51827.1| CheY-like response regulator receiver [Methanococcoides burtonii
           DSM 6242]
          Length = 302

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD      ++   L     + +  A+   EA +   KE L + +++D  M      
Sbjct: 23  TILIVDDEPNNVELLEALL-FVDYEIMTASGGQEALDIINKENL-DLVLLDVMMPEITGY 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E   H++       + V  +    + E  I G  AGA+ FL KP +R  L   +R L ++
Sbjct: 81  EVCEHIKSSIKTQFLPVIMVTALTEREDRIKGIEAGADDFLSKPVDRLELNTRVRSLIRI 140

Query: 121 QKSKD 125
           ++ +D
Sbjct: 141 KQLQD 145


>gi|83313243|ref|YP_423507.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82948084|dbj|BAE52948.1| Response regulator containing a CheY-like receiver domain and an
           HD-GYP domain [Magnetospirillum magneticum AMB-1]
          Length = 381

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD +    K+   L  D  + V  A    +A      +  P+ +++D  M      
Sbjct: 8   TILVVDDTPDNLKLMSGLLKDL-YRVKIANGGEKALAIAASDAPPDLILLDIMMPEVDGY 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++      D+ V +L      E    G + GA  ++ KP     +   +    ++
Sbjct: 67  EVCRRLKASRATRDIPVIFLTAMSGSEDEEVGLKMGAVDYITKPITPAVVLARVETHLKL 126

Query: 121 QKSKD 125
           + S D
Sbjct: 127 KASAD 131


>gi|330503901|ref|YP_004380770.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918188|gb|AEB59019.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 773

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G+ V  A    EA E  E++ + + +++D +M  +  +
Sbjct: 651 RVLLVEDNPVNQMVAKGMLTKLGYQVLVAGHGGEALEILEQQPV-DLVLMDCNMPVMDGY 709

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R      ++ +  L      ++      AG N +L KPF RE L   +    
Sbjct: 710 EASRRIRSNGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDAWL 767


>gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK--ELLPNYLVIDESME- 57
           M  +++V+    +  +      + G  V        A E      +  P+ +V+D  +  
Sbjct: 1   MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              LE    VRQ  +     +  L         + G   GA+ +L KPF+   L+  +  
Sbjct: 61  VDGLEICRRVRQSKI---TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSA 117

Query: 117 LPQMQKSKDENQFLD 131
           + +  +        +
Sbjct: 118 ILRRVEMMRALSRTE 132


>gi|203284656|ref|YP_002222396.1| response regulatory protein [Borrelia duttonii Ly]
 gi|201084099|gb|ACH93690.1| response regulatory protein [Borrelia duttonii Ly]
          Length = 451

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+ D    +R+       + G+ VF A+   EA E  + E   + ++ D  M  + 
Sbjct: 1   MSKLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEK-IDAIISDLRMPQIS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  V+      ++    L      +  +   R GA  FL KP + E L   ++   
Sbjct: 60  GEELLKIVK--DRNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRAL 117

Query: 119 QMQKSKDENQFLD 131
           + +  K +   L 
Sbjct: 118 KKRNDKTQQNVLQ 130


>gi|149921398|ref|ZP_01909851.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149817718|gb|EDM77183.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 477

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD     R     L  D  F V  A    +A    +    P+ ++ D  M G+   
Sbjct: 11  RILVVDDESSARSALTELLRDENFEVQSAGDGFKALGRLD-NFTPDVVITDLKMPGMNGI 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +V V  +      E  +   + GA+ +L KP +   L   +  +   + 
Sbjct: 70  ALMEKVRERLPEVPVVVMTAFGTVESAVEAIQQGADDYLTKPLHLGQLLVVVERVLGHRA 129

Query: 123 SKDENQFL 130
            KDE + L
Sbjct: 130 LKDEAKRL 137


>gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 309

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    ++ + P+ +++D  M G+  F 
Sbjct: 13  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A ++       V V ++    + E ++    +G   +L KP N + LR  +R      
Sbjct: 72  TCARLKANASVAQVPVVFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 132 RSAQSARVALDA 143


>gi|114049036|ref|YP_739586.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-7]
 gi|113890478|gb|ABI44529.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-7]
          Length = 348

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD +    ++   + ++  + +  ATS  +A +      LP  +++D  M  +  F
Sbjct: 9   TLLVVDDTPDNIQIIHGILSEQ-YTIRAATSGEKALKLASTHPLPELILLDVMMPEMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P+ + + V ++  + D      G   GA  ++ KP +   L+   +    +
Sbjct: 68  ETCRRLKRDPVTSKIPVVFVTAKTDTIDEQTGFELGAVDYISKPISPAVLKVRTQTHLAL 127

Query: 121 QKSKDENQFL 130
                + + L
Sbjct: 128 SNQARQLEAL 137


>gi|330504989|ref|YP_004381858.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919275|gb|AEB60106.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 778

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA E    E + + +++D  M  +  F
Sbjct: 648 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALELLRGESV-DAVLLDCQMPVMDGF 706

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
                +R +P   DV V  +              AG + +L KP   E LR
Sbjct: 707 ATCRAIRALPGCADVPVLAITAHSHSGDRERCLAAGMSDYLAKPVKFEELR 757


>gi|298482963|ref|ZP_07001145.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298270935|gb|EFI12514.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1315

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            S+L+VD +  +    +    ++   V  A+   EA +   +   P+ +V D  M  +   
Sbjct: 1059 SILVVDDNPDLTDFLKKSLGEYFKRVVIASDGVEALQ-LTRNHAPDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E   ++++    + + +  L    D +  ++G + GA+++L KPF  E L   +R   + 
Sbjct: 1118 ELCKNIKEDITISHIPIILLTARNDKQSQLSGYKNGADAYLTKPFEIEMLMEIIRNRLKN 1177

Query: 121  QKSKDE 126
            ++S  +
Sbjct: 1178 RESIKK 1183


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +LLV+ + + + V   L  D GF V  A +   A +  + +   + +++D  M  +    
Sbjct: 1267 VLLVEDNELNQMVAVELLRDAGFAVDVAGNGERALQLLDGKNY-DVVLMDMQMPVMDGET 1325

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +R  P   D+ V  +              AG N  + KP     L  A+    +++
Sbjct: 1326 ATRRLRADPRHADLPVIAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALARWIRLR 1385



 Score =  100 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57
              +L+VD +H    V   +    GF V +A S  EA E       ++     L++D  M 
Sbjct: 1116 RRVLVVDDNHTAATVLSEMLQSMGFHVDQAYSGLEALETLRQATQQQKPYGLLLLDWHMP 1175

Query: 58   GVLEFIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            G+        +R M L     +  +      + M A    G  + L+KP N   L   +
Sbjct: 1176 GMDGVELAGHIRSMGLAEIPQMLMVTAYGREDVMRAARAQGIEAVLIKPVNASVLFDTL 1234


>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + +
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116


>gi|237728026|ref|ZP_04558507.1| DNA-binding transcriptional regulator CpxR [Citrobacter sp. 30_2]
 gi|226910283|gb|EEH96201.1| DNA-binding transcriptional regulator CpxR [Citrobacter sp. 30_2]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A E  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
           [Streptococcus pyogenes]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 243

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDESM 56
            +LLV+     R          GF V EA     A E  E    P      + +++D  +
Sbjct: 9   RILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                 E    +R     + V V  L  +      I G   GA+ ++ KP++   L   +
Sbjct: 69  PRLDGTEVCTRIR---RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 125

Query: 115 RELPQMQK 122
           + + +  +
Sbjct: 126 KAVLRRSR 133


>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 415

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 3/130 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           L+ D   I+R   R      G++V EA +  EA E  +K   P+ +++D  M G+  F  
Sbjct: 13  LITDDDIIIRMFAREALEQAGWVVEEAQNGSEACELFQK-CPPDVVLLDVMMPGMDGFAT 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A +R++P G    +  +    DFE +     AGA  F++KP N   L   +R + +  +
Sbjct: 72  CAALRRLPGGEHTPILIMTGLDDFESITKAYDAGATDFIVKPLNAMLLTHRIRYMVRADQ 131

Query: 123 SKDENQFLDA 132
              E +   A
Sbjct: 132 VLQELRESQA 141


>gi|299138655|ref|ZP_07031833.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599291|gb|EFI55451.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 251

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A    + R F E   + + +V+D  M G     
Sbjct: 12  ILVVDDDREIRELVSSYLKKNGLRVTIAADGRQMRSFLEANTV-DLIVLDIMMPGHDGLV 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + V  L    D    I G   GA+ +L KPF    L   ++ + +  
Sbjct: 71  LCRELRS-GKHKAIPVLLLTARSDEMDRIIGLEMGADDYLTKPFAARELLARIKAILRRT 129

Query: 122 KSKDEN 127
           +    N
Sbjct: 130 RMLPPN 135


>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
 gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
 gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L V+    + +    L     + V  A       ++     + + LV+D  +  +   
Sbjct: 2   RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYA-ASGVYDLLVLDIMLPKIDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         +  L  + + +  + G  AGA+ +L KPF  + L   +R L + + 
Sbjct: 61  TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120

Query: 123 SKDENQFLD 131
              +   L 
Sbjct: 121 LDYQEDQLA 129


>gi|237711352|ref|ZP_04541833.1| LOW QUALITY PROTEIN: two-component system sensor histidine
           kinase/response regulator [Bacteroides sp. 9_1_42FAA]
 gi|229454047|gb|EEO59768.1| LOW QUALITY PROTEIN: two-component system sensor histidine
           kinase/response regulator [Bacteroides sp. 9_1_42FAA]
          Length = 953

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 705 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 762

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 763 CKAIRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 822

Query: 123 SKDE 126
              +
Sbjct: 823 LLRQ 826


>gi|237724302|ref|ZP_04554783.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|265752758|ref|ZP_06088327.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|229437171|gb|EEO47248.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
 gi|263235944|gb|EEZ21439.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1328

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 1138 CKAIRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197

Query: 123  SKDE 126
               +
Sbjct: 1198 LLRQ 1201


>gi|212692453|ref|ZP_03300581.1| hypothetical protein BACDOR_01949 [Bacteroides dorei DSM 17855]
 gi|212665032|gb|EEB25604.1| hypothetical protein BACDOR_01949 [Bacteroides dorei DSM 17855]
          Length = 1328

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 1138 CKAIRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197

Query: 123  SKDE 126
               +
Sbjct: 1198 LLRQ 1201


>gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +     +     GF V  A    EA E       P+ +V+D  M  + 
Sbjct: 1   MIKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAA-FKPDVMVLDVMMPKMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R++  G    +  L ++ D    + G   GA+ ++ KPF+   +   ++ L + 
Sbjct: 60  GYEVC-RKLEAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRR 118

Query: 121 QKSKDENQ 128
           ++ +   Q
Sbjct: 119 RQIESPEQ 126


>gi|189424148|ref|YP_001951325.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420407|gb|ACD94805.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 239

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +  +    F+     V  A    E     EK    + +++D  ++G  
Sbjct: 1   MPQLLIVDDDEEILSLLTKFFSQHHHSVTVAVDGTEMFTALEKNS-FDLIILDVMLKGED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +     + V  L    D    I G   GA+ +L KPFN   L   ++ + 
Sbjct: 60  GFSLCRRLRMVSK---IPVIILTAMGDLTDRIVGLEIGADDYLTKPFNARELLARVKAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1829

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1709 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1768

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1769 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWMR 1827


>gi|15601845|ref|NP_233476.1| chemotaxis protein CheY [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121585901|ref|ZP_01675694.1| chemotaxis protein CheY [Vibrio cholerae 2740-80]
 gi|121728512|ref|ZP_01681536.1| chemotaxis protein CheY [Vibrio cholerae V52]
 gi|153215675|ref|ZP_01950071.1| chemotaxis protein CheY [Vibrio cholerae 1587]
 gi|153801274|ref|ZP_01955860.1| chemotaxis protein CheY [Vibrio cholerae MZO-3]
 gi|153827833|ref|ZP_01980500.1| chemotaxis protein CheY [Vibrio cholerae 623-39]
 gi|227812659|ref|YP_002812669.1| chemotaxis protein CheY [Vibrio cholerae M66-2]
 gi|254284716|ref|ZP_04959683.1| chemotaxis protein CheY [Vibrio cholerae AM-19226]
 gi|254850253|ref|ZP_05239603.1| chemotaxis protein CheY [Vibrio cholerae MO10]
 gi|297579867|ref|ZP_06941794.1| chemotaxis protein CheY [Vibrio cholerae RC385]
 gi|298499856|ref|ZP_07009662.1| chemotaxis protein CheY [Vibrio cholerae MAK 757]
 gi|9658542|gb|AAF96988.1| chemotaxis protein CheY [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|50872121|dbj|BAD34539.1| cheY homolog [Vibrio cholerae]
 gi|121549837|gb|EAX59857.1| chemotaxis protein CheY [Vibrio cholerae 2740-80]
 gi|121629230|gb|EAX61668.1| chemotaxis protein CheY [Vibrio cholerae V52]
 gi|124114658|gb|EAY33478.1| chemotaxis protein CheY [Vibrio cholerae 1587]
 gi|124123189|gb|EAY41932.1| chemotaxis protein CheY [Vibrio cholerae MZO-3]
 gi|148876678|gb|EDL74813.1| chemotaxis protein CheY [Vibrio cholerae 623-39]
 gi|150425501|gb|EDN17277.1| chemotaxis protein CheY [Vibrio cholerae AM-19226]
 gi|227011801|gb|ACP08012.1| chemotaxis protein CheY [Vibrio cholerae M66-2]
 gi|227015738|gb|ACP11947.1| chemotaxis protein CheY [Vibrio cholerae O395]
 gi|254845958|gb|EET24372.1| chemotaxis protein CheY [Vibrio cholerae MO10]
 gi|297535513|gb|EFH74347.1| chemotaxis protein CheY [Vibrio cholerae RC385]
 gi|297541837|gb|EFH77888.1| chemotaxis protein CheY [Vibrio cholerae MAK 757]
          Length = 125

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    EA    +K    + ++ D +M  + 
Sbjct: 7   MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKA-RFDVIISDVNMPVMT 65

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  VR         +  L  E   EK   G   GA  +L+KPFN ETL   ++ + 
Sbjct: 66  GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +      +D G++V  A    E   +       + +V+D  +  +   
Sbjct: 2   RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEG-HYLGDSEPYDAVVLDIGLPKMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G  + V  L     +   + G  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 123 SKDENQF 129
              +++ 
Sbjct: 121 GHAQSEL 127


>gi|117926464|ref|YP_867081.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117610220|gb|ABK45675.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++LLVD    +  +      + GF      S  EA     +      ++ D  + G+ 
Sbjct: 1   MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVL-DVMLPGIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   +R++   T+V V  L    +    I G   GA+ +L KP N   L   +R + + 
Sbjct: 60  GF-DLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRR 118

Query: 121 QKSKD 125
              + 
Sbjct: 119 TGGER 123


>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1141

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+ + I R+V + +    G  VFEA +  +A EF +   + + +++D  M  +  
Sbjct: 790 KRILLVEDNEINRQVAQEILASVGMEVFEAYNGEKALEFLKGNDV-DLVLMDIQMPVMDG 848

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R      D+ +  +        +      G N  + KPF+ + L   +    
Sbjct: 849 HEATRRIRDQARFKDLPIIAMTAHAMLADIEKSKEVGMNDHIAKPFDPDDLFAVLNRWL 907



 Score = 78.7 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 14/141 (9%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPN---YLVIDESMEGVLE 61
           L+VD +   R + + +    G  V    S  EA +        +    LV+D  M  +  
Sbjct: 648 LVVDDNPTSRIILKGMLEYMGLSVTTVKSGAEAIDALHGRRGADAFRLLVVDWRMPEMDG 707

Query: 62  FIAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                R +          ++ +    +   +      G    L KP N+  L   + E  
Sbjct: 708 LETAERILKDEAIAVKPPMFMVSAYGNASLVKRTNELGFRGLLFKPVNQSFLFNLVVETL 767

Query: 119 --------QMQKSKDENQFLD 131
                   +  + + E + L 
Sbjct: 768 GKGMVTLNESMRPEKELERLS 788


>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V    +     +   +E   + L++D  + G+ 
Sbjct: 1   MSRILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEED-FDLLILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    +  +  +  + D    I G   GA+ ++ KPF+   +   ++   
Sbjct: 60  GFEICKKVREV---KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHM 116

Query: 119 QMQKSK-----DENQFLD 131
              +        EN+ ++
Sbjct: 117 ARYERLIGSGTPENEIIE 134


>gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F++KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 SRGGETEQIE 131


>gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
 gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + +A            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            +S
Sbjct: 118 TQS 120


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 7   RLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +L+KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTKQTI 132


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 6/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+++    +  + +       +   +A            +     +++D  +     +E
Sbjct: 2   ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDY-ELILLDLMLPRINGIE 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         +  L    +    + G + GA+ +L KPF  E L   +  L +  
Sbjct: 61  VCRQLRLK---KQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRV 117

Query: 122 KSKDE 126
            ++++
Sbjct: 118 SNQNK 122


>gi|154494827|ref|ZP_02033832.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184]
 gi|154085377|gb|EDN84422.1| hypothetical protein PARMER_03869 [Parabacteroides merdae ATCC 43184]
          Length = 1313

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+VD +  +  + +   +   + V EA +  EA    +++  P+ ++ D  M  +  F 
Sbjct: 1065 ILVVDDNRDIVWLIKETLSSE-YAVREAFNAEEALALMDQQT-PDLIITDIMMPSMDGFA 1122

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             I+ ++       + +  +  +V   +   G   GA+ +L KPF+   L   +  L   +
Sbjct: 1123 LISRIKSDKFTRHIPLIVVSAKVSESEQAEGLDLGADVYLTKPFSSVVLHSVVNRLMANK 1182

Query: 122  KSKD 125
            K   
Sbjct: 1183 KELK 1186


>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
 gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 226

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   + +  GF     T    A E   +E  P+ +++D  + G+  
Sbjct: 3   QKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASRE-QPDLILLDLMLPGMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      V +  L  + D   ++ G  +GA+ ++ KPF  + L   +R   +
Sbjct: 62  IDICRLIRQESS---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118


>gi|42527474|ref|NP_972572.1| sigma-54 dependent transcriptional regulator/response regulator
           [Treponema denticola ATCC 35405]
 gi|41818059|gb|AAS12483.1| sigma-54 dependent transcriptional regulator/response regulator
           [Treponema denticola ATCC 35405]
          Length = 473

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L++D    +R+       D G+ V  A +     +   K+ + + ++ D  M  +
Sbjct: 1   MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEV-DLVITDLKMPEI 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                    +     V V  L      E  +   R GA  FL KP + E L   ++   Q
Sbjct: 60  SGEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQ 119

Query: 120 MQKSKDENQFL 130
            +    +N+ L
Sbjct: 120 NRALVLQNRAL 130


>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
 gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
          Length = 1547

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNY---LVIDESMEGV 59
             +LLV+ + + + V R + +D G +V  A +  EA +  +     +    +++D  M  +
Sbjct: 1263 RVLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDALQSAQQWDLYSLVLMDCQMPEM 1322

Query: 60   LEF-----IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +     I   +   +   + +  +              AG + ++ KP + + L   +
Sbjct: 1323 DGYETTRSIRAGKAGEIYKKIPIIAMTANAMKGDKERCFAAGMDDYISKPIDPQVLEDRL 1382

Query: 115  RELPQM 120
            R+    
Sbjct: 1383 RKWLPR 1388



 Score = 89.9 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK----ELLPNYLVIDESME 57
             S+LL++ +  VR++     + +G  VF A    +    C+       LP+ ++ID+ + 
Sbjct: 1109 KSVLLIEDNKSVRELVYRWLDSWGANVFAAEDGAQGLARCQDLKALNNLPDVVLIDQYLP 1168

Query: 58   G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                 +    +  +    D+ V  L   +   ++     AGA  ++ KP  R  L  +++
Sbjct: 1169 DQTGCDLAKQMLGIEGCADLPVLILS-RIAEGELQKFCDAGARGYVAKPLTRAGLVESVK 1227

Query: 116  ELPQ 119
             L +
Sbjct: 1228 VLLE 1231


>gi|237716479|ref|ZP_04546960.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|229444126|gb|EEO49917.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
          Length = 853

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+V+ +  +R       +   + V    +  EA     KE  P  ++ D  M  +  
Sbjct: 587 RRILVVEDNDELRSYLVSSLSSI-YNVQACANGKEAL-IIIKEYWPELVLSDIMMPEMRG 644

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++     + + V  L    +   ++ G   GA+ +L+KPF+ + LR  +  L  
Sbjct: 645 DELCVAIKSDIEISHIPVLLLTALGEENNILDGLSIGADEYLIKPFSVKILRANIANLLA 704

Query: 120 MQKSKD 125
            ++   
Sbjct: 705 NRELLR 710


>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDENQFLD 131
            +K     + L+
Sbjct: 119 SRKVTK--RLLE 128


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++   + +  GF     T    A E   +E  P+ +++D  + G+  
Sbjct: 3   QKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASRE-QPDLILLDLMLPGMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ      V +  L  + D   ++ G  +GA+ ++ KPF  + L   +R   +
Sbjct: 62  IDICRLIRQESS---VPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118


>gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|323700576|ref|ZP_08112488.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio sp. ND132]
 gi|323460508|gb|EGB16373.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio desulfuricans ND132]
          Length = 394

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLVD       +         + +  AT    A E    +  P+ +++D  M G+   
Sbjct: 6   TILLVDDQPENISIMIEALYPL-YTLLAATDGATALERAAGDPRPDLILLDVMMPGMSGH 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P   D+ V ++      +    G RAGA+ ++ KP +   ++  +R    +
Sbjct: 65  EVCRRLKEDPATRDIPVIFVTSLDAPDDEARGLRAGASDYIAKPISPPVVQARVRAHLDL 124

Query: 121 QKSKDENQF 129
           + ++++ Q 
Sbjct: 125 KLAREQLQR 133


>gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
 gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
          Length = 225

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A S  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGEREATD 125


>gi|294645048|ref|ZP_06722774.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292639554|gb|EFF57846.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1461

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1203 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1260

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D +        GAN+++ KPF++E L   + +L   
Sbjct: 1261 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1320

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1321 RKLFRERIRQQMENQ 1335


>gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
 gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ VF A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELF-KNKSIDLIITDIMMPKMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI+ V+ +    D    ++  +   +  I G   GA+ F+ KPF+   L   +  + +
Sbjct: 62  YDFISEVQYLS--PDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIFR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
 gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|170747205|ref|YP_001753465.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653727|gb|ACB22782.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 244

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 13/139 (9%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVL 60
            ++ +V+    +R +        GF    A     A +      + P+ +V+D  + G  
Sbjct: 5   TTIAIVEDDPDIRALLAGYLEGEGFR-TVALDGGAALDRLLASGVAPHLVVLDWMLPGED 63

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        +  L  + +    + G   GA+ ++ KPFN   L   +R + 
Sbjct: 64  GLSICRRLRESGG---PPIVMLTAKDEDIDRVLGLEMGADDYVSKPFNPRVLLARIRAVL 120

Query: 119 QM------QKSKDENQFLD 131
           +       Q ++  ++ L 
Sbjct: 121 RRAHGAGVQAAEAASERLS 139


>gi|162449920|ref|YP_001612287.1| sigma-54 dependent DNA-binding response regulator [Sorangium
           cellulosum 'So ce 56']
 gi|161160502|emb|CAN91807.1| sigma-54 dependent DNA-binding response regulator [Sorangium
           cellulosum 'So ce 56']
          Length = 451

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R     +    G+ V EA    +  +    +   + ++ D  M G  
Sbjct: 1   MSKILVVDDQRNMRTTLAMMLRGAGYEVDEAADGSQGAD-LGAKGAYDVVLTDLRMGGFD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +  +  V+      +  V  +      E  +   R GA  ++ KPF+ + L   +    
Sbjct: 60  GIGVLRAVK--ESNANTEVIVMTAYGTIESAVEAMRLGAFDYIQKPFSEQELLVKVERAI 117

Query: 119 QMQKSKDENQFLDA 132
           Q +K   E Q L +
Sbjct: 118 QNRKLTGEVQLLAS 131


>gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 219

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +     +  G+         EA    E +   + +++D  + GV 
Sbjct: 1   MIKVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQ-FFDLILLDIMLPGVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +       D+ V ++    + +  + G R GA+ +L+KPF+   L   +  + + 
Sbjct: 60  GY--DIMSYIRPMDIPVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLRR 117

Query: 121 QKSKDEN 127
               +  
Sbjct: 118 YNKTERL 124


>gi|315606818|ref|ZP_07881827.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae ATCC 33574]
 gi|315251483|gb|EFU31463.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae ATCC 33574]
          Length = 954

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ +  V      L +D  + +F A +     +  E  ++P+ ++ D  M  +  
Sbjct: 691 TRILIVEDNRDVAAYTGSLLSDR-YDLFYAANGKLGVKKAES-IVPDLIITDLMMPEMDG 748

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                HVR+  L + V +  +  +      I G  AGA+++L KPFN + L   + +L +
Sbjct: 749 LELCRHVRKTELISHVPIIVITAKTSEADRIKGLEAGADAYLDKPFNSDELCVRVEKLLE 808

Query: 120 MQKSKDE 126
            ++   E
Sbjct: 809 QRQLLRE 815


>gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 233

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +LLV+ +  VR +        G+    A +   A         P+ +++D  +  
Sbjct: 1   MNKTLVLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHN-PDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   + + +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDGV-EVIKKIRSWSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 239

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V    +       + V  A    +A +F  +E  P  +++D  +     +
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEK-PTLILLDWMLPVYDGM 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    +DV +  L  +     + +    G + +L KPF  E L   +R + + 
Sbjct: 66  TVLRRIRKQ---SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122

Query: 121 QKSKDEN 127
            +   + 
Sbjct: 123 LEKMRQQ 129


>gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 247

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD   +VR +        GF V        A +   ++  P  +V+D  M  +   
Sbjct: 4   SILVVDDDPVVRNLVSQYLEGRGFKVATLEHGM-ALQSKLRDERPALVVLDIMMPELDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G D+ V  L    D    + G   GA+ +L KPF    L   +R + + + 
Sbjct: 63  SALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRG 122

Query: 123 S 123
           S
Sbjct: 123 S 123


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    V ++ +      G+ V        A      E   + +++D  +    
Sbjct: 1   MK-VLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREAL-EGDYHLILLDIMLPKFD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               ++ +R++    D+ V  +  +   E  + G  AGA+ ++ KPF+ + +   +  + 
Sbjct: 59  GMKVLSRIREV---KDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVL 115

Query: 119 QMQKSKDEN 127
           +  K ++E+
Sbjct: 116 RRYKKEEED 124


>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+    +R++    F + GF V EA     A E    E   + +++D  +  +  
Sbjct: 3   KTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELF-AEHEIDLIMLDIMLPEIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L    D +  + G   GA+ ++ KPF+ + L    + L +
Sbjct: 62  WSVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|254457487|ref|ZP_05070915.1| two component transcriptional regulator, winged helix family
           [Campylobacterales bacterium GD 1]
 gi|207086279|gb|EDZ63563.1| two component transcriptional regulator, winged helix family
           [Campylobacterales bacterium GD 1]
          Length = 220

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++       F F V       +A    + E   + +++D ++ G+ 
Sbjct: 1   MKKILMIEDDLELAEILTEYLEQFEFEVITEDDPFKAVSILKLEP-FDLVILDLTLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +       D    I     GA+ +L KP++   L   +  + 
Sbjct: 60  GLEVCEAIRER---QDIPIIISSARSDVTDKIKALELGADDYLPKPYDPRELEARIHSVL 116

Query: 119 QMQKSKDENQ 128
           +   +K E +
Sbjct: 117 RRYAAKSEAK 126


>gi|167033014|ref|YP_001668245.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859502|gb|ABY97909.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 246

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      +  V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELRA-GKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|37679342|ref|NP_933951.1| hypothetical protein VV1158 [Vibrio vulnificus YJ016]
 gi|320156916|ref|YP_004189295.1| two component response regulator [Vibrio vulnificus MO6-24/O]
 gi|37198085|dbj|BAC93922.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
 gi|319932228|gb|ADV87092.1| two component response regulator [Vibrio vulnificus MO6-24/O]
          Length = 304

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD +    K+   L  + G++V  A S   A   C+K+  P+ +++D  M      E
Sbjct: 10  ILVVDDTVDNVKLLSQLLQNEGYLVKGALSAKSALRMCQKKK-PDLILLDIMMPEVDGYE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               +++ P   D+ V +L      +  +   + G   ++ KPF    +   +R      
Sbjct: 69  LCRQLKKDPSTQDIPVIFLSALDHVQDKVRAFQIGGVDYIQKPFEVMEVLARVRTHAGLV 128

Query: 120 --MQKSKDENQFLD 131
              +   ++N+ L 
Sbjct: 129 TLQRALIEQNEQLK 142


>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+ D +  + ++   L    GF V +A +  EA +    +   + +++D  M     
Sbjct: 7   KRILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVD--RTDDSIDLIILDVMMPQKSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +  + +R+    T V + +L  +      + G   G + +L KPF+   L   ++ L +
Sbjct: 65  YKACSEIREK---TRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|299144821|ref|ZP_07037889.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515312|gb|EFI39193.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1342

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +        +   + V  AT+  EA +  +     N ++ D  M  +  F
Sbjct: 1093 TVLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALKVLDGN-YVNLVISDVVMPVMDGF 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  + + +  I G   GA++++ KPF+ E L+     L Q 
Sbjct: 1151 ELCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQN 1210

Query: 121  QKSKDE 126
            ++   +
Sbjct: 1211 REKLRQ 1216


>gi|293372439|ref|ZP_06618823.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292632622|gb|EFF51216.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1342

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +        +   + V  AT+  EA +  +     N ++ D  M  +  F
Sbjct: 1093 TVLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALKVLDGN-YVNLVISDVVMPVMDGF 1150

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  + + +  I G   GA++++ KPF+ E L+     L Q 
Sbjct: 1151 ELCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQN 1210

Query: 121  QKSKDE 126
            ++   +
Sbjct: 1211 REKLRQ 1216


>gi|291523694|emb|CBK89281.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +R   + L    G+ V  A +  +  +  ++      +++D  M    
Sbjct: 1   MYKILIVEDDETIRNGIKTLLELQGYYVDIAVNGVDGLKKFDETYS--LVIMDIIMPLLS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +R+      V + +L  +     ++ G   G + +L+KPF+   L   ++ L 
Sbjct: 59  GIDACKKLREESS---VPILFLTAKSSEIDIMQGFEVGGDDYLVKPFSNMELISRVKALL 115

Query: 119 QMQKSKDEN 127
           + +   D  
Sbjct: 116 RRRNVYDRE 124


>gi|322421927|ref|YP_004201150.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Geobacter sp.
           M18]
 gi|320128314|gb|ADW15874.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Geobacter sp. M18]
          Length = 715

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD   ++R +        GF V EA +   A E   ++L P+ +++D  M  +  F 
Sbjct: 12  VLVVDDDEMMRDLAVAALEQAGFFVAEAENGRVALEQF-RQLQPDIVLLDVMMPELDGFS 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +P G DV V  +    D   +     AGA  F+ KP +   LR  +R + +  
Sbjct: 71  TCRALRGLPGG-DVPVLMMTGLDDTHAIEKAYHAGATDFITKPIHWAILRHRVRYMLRSS 129

Query: 122 KSKDENQFLDA 132
           K+  + +  +A
Sbjct: 130 KAMRDLRVSEA 140


>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   R  F    F V E  S  E       E  P+  ++D  + G+ 
Sbjct: 1   MK-ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEK-PDIAILDVMLPGMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       + +  L  + +    I G + GA+ ++LKPFN   +   ++ L + 
Sbjct: 59  GFEVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118

Query: 121 QKSKDEN 127
            +  +E 
Sbjct: 119 LEGINEE 125


>gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +R+  +      G+ V++A    E  E  EKE   +  ++D  M  +    
Sbjct: 6   ILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEE-IHLAIVDVMMPRMDGIR 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 65  MTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYR 122


>gi|313680794|ref|YP_004058533.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153509|gb|ADR37360.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 220

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A S   A E          +++D  + GV   
Sbjct: 4   RVLVVDDDPNLLRLVEANLRARGYAVDTAASGEAALERLRMAGY-ACVLLDLMLPGVDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+     DV +  +    + E+ +     GA+ +L+KPF    L   +R   +   
Sbjct: 63  TV-IREARGFCDVPIVVMSALGEEERKVEALDLGADDYLVKPFGVAELLARVRAAIRRYG 121

Query: 123 SKDENQFLDA 132
                + L A
Sbjct: 122 VLGPAEGLRA 131


>gi|298385042|ref|ZP_06994601.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298262186|gb|EFI05051.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1312

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            ++L+VD +  +        +++   V  A+   EA +   K   P+ +V D  M  +   
Sbjct: 1059 TILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLV-KSYTPDIIVSDVMMPRMNGY 1117

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +++    + + +  L    D E  I+G + GA+ +L KPF  E L   +R   + 
Sbjct: 1118 ELCKGIKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRLKN 1177

Query: 121  QKSKDENQFLDA 132
            ++   + ++LDA
Sbjct: 1178 REYTKK-RYLDA 1188


>gi|297565826|ref|YP_003684798.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296850275|gb|ADH63290.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 219

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    VR+  +      G+ V EA++  E     E+   P+ +++D  M G   F
Sbjct: 7   RVLLVEDDRGVREALKLGLELEGYTVLEASNGPECLRKLEEG--PDAVILDVLMPGGDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   + V V  L    + E  + G + GA+ +L+KP+    L   +  + +  +
Sbjct: 65  -GVLREIRRKSSVPVLMLTALDEVEWRVKGLKEGADDYLVKPYALPELVARLEAVLRRTR 123

Query: 123 SKD 125
            +D
Sbjct: 124 RED 126


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++ K  +         V  A    EA E+       + +++D  +  +   
Sbjct: 13  RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKY-DIILLDIMLPKLDGL 71

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  L  + D    I G   GA+ ++ KPFN   ++  M+ + + 
Sbjct: 72  SVCQQIRE---FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR 128

Query: 121 QKSKDENQF 129
             S  + + 
Sbjct: 129 NSSITQKEQ 137


>gi|226315436|ref|YP_002775332.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226098386|dbj|BAH46828.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 1050

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            LL+VD   +  +V   +     + V   TS  EA          + ++ D  M  +   
Sbjct: 710 RLLIVDDDPVNLQVLEAILPPDEYEVTMVTSGKEALAILGTGEW-DLVISDIMMPQMSGY 768

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T++ V  L      + + +G  AGAN ++ KP     ++  +  L  +
Sbjct: 769 ELTRMIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPIEGMEIKSRIEALTTI 828

Query: 121 QKSKDENQFLDA 132
           ++S  E   L+A
Sbjct: 829 KQSVREQLRLEA 840


>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 242

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A+    A +     L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAA-TTLRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130

Query: 122 KSKD------ENQFL 130
                     EN+ L
Sbjct: 131 DRAKVIAKNSENEKL 145


>gi|149372308|ref|ZP_01891496.1| two-component system, transcriptional regulatory protein
           [unidentified eubacterium SCB49]
 gi|149354698|gb|EDM43261.1| two-component system, transcriptional regulatory protein
           [unidentified eubacterium SCB49]
          Length = 238

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLAMNDYNVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           +V + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNAEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124


>gi|260904536|ref|ZP_05912858.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 338

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           ++LV+   ++R+  +     F + V       E  EF       + L++D  +  +    
Sbjct: 3   IVLVEDDEVIRETTQIGLERFDYTVSAFADGREGYEFVAAHGA-DVLLLDLMLPTMNGAS 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               VR+    + + +  +    D   ++    AGA+ +L KPF+ + L   +R + + 
Sbjct: 62  ICRAVRER---STIPIIIISARSDAIDIVQALEAGADDYLTKPFDMQVLNARIRAVVRR 117


>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D  H + K+  H     G+ V  A    +A +     + P+ +++D  M  +   
Sbjct: 5   TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLA-TTMKPDIVIMDIMMPKLDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  +      DV +  L  + D    I G + G + +  KPF+   L   ++ + +  K
Sbjct: 64  EASQKIKMK-VDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSK 122

Query: 123 SKDENQ 128
           +  E +
Sbjct: 123 AVPEKK 128


>gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +         + G+ V   T    A      E  P+  + D  M  + 
Sbjct: 1   MATIALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHL-TETPPDLAIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +++ V +L  +        G   GA+ ++ KPF+ + L   ++ + + 
Sbjct: 60  GL-ELLRRVRQSSNLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 AQA 121


>gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V  A    E   F       + +++D  +  +   
Sbjct: 2   RILIVEDDINLNRQLADALKEAGYVVDTAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHSSSEII 128


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V        G+ V    +  +  +  E+E   + +++D  +  +   
Sbjct: 5   KILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEES-FDLVLLDVMLPELSGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-Q 121
               R     T   +  +         ++G   GAN ++ KPF+ E L   +R   ++  
Sbjct: 64  EVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123

Query: 122 KSKDENQ 128
            +++E +
Sbjct: 124 HAQEEKE 130


>gi|94263690|ref|ZP_01287498.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455889|gb|EAT06048.1| GGDEF:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 303

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L VD S +  K+   +  +  + V  AT   +A      + LP+ +++D  M  +   
Sbjct: 9   TILAVDDSPMNIKILHDIL-NQDYRVIFATGGADALTIA-ADSLPDLILLDIMMPEMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + + ++    D E    G   GA  ++ KP N+  ++  ++   ++
Sbjct: 67  EVCHRLKEDPRTQRIPIIFVTAMTDQEDEAKGLDLGAIDYITKPVNQAVVKARVKNHLEL 126

Query: 121 QKSKDENQFLD 131
           ++ +D  Q + 
Sbjct: 127 KRYQDFLQDIA 137


>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CDC1551A]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 5   RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 64  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 121


>gi|71908618|ref|YP_286205.1| response regulator receiver [Dechloromonas aromatica RCB]
 gi|71848239|gb|AAZ47735.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Dechloromonas aromatica RCB]
          Length = 361

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     V   L     + V  A S   A +       P+ +++D  M  +   
Sbjct: 7   TILIVDDTPENLSVLGELLQPT-YRVRAANSGRRALQIALGTPTPDLILLDVMMPEMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++       + V ++      E    G   GA  ++ KP     +   +R   ++
Sbjct: 66  DVLTELQASAATRSIPVIFVTAMDGTEDEERGLDHGAVDYITKPIRPSIVLARVRTQLEL 125

Query: 121 QKSK----DENQFLDA 132
           + ++    D+N FL+A
Sbjct: 126 KAARDILSDQNSFLEA 141


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+++    +R+  +       + V  A    E  E  +     + +++D  M  +  
Sbjct: 7   KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSN-FYDLILLDLMMPKLSG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +++ +  L  +      +     GA+ +L KPF  E L   +R   +
Sbjct: 66  EEVCKIIRK---TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALR 122

Query: 120 MQKS 123
            + +
Sbjct: 123 NKSN 126


>gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396]
 gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396]
 gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 SRGGETERIE 131


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D    +  +     N+ G+ V +     +A E+  K    +  ++D  M  +  
Sbjct: 3   TKILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYM-KNNRVDLALLDVMMPEISG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+  +     V  L  +V+    I G   GA+ ++ KPFN   L   ++   +
Sbjct: 62  FEICKIIREKYMF---PVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLR 118

Query: 120 MQKSKDENQ 128
             K  + +Q
Sbjct: 119 RYKKYNPSQ 127


>gi|299149349|ref|ZP_07042406.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298512536|gb|EFI36428.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1336

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +  +R       ++  + V   ++  +A      E  P  ++ D  M  +  
Sbjct: 1071 RRILIVEDNDELRNYLSQTLSEE-YFVQVCSNGKKALTIIP-EYKPELVISDIMMPEMRG 1128

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    ++     + + V  L    + + +++G + GA+ +++KPFN   L+  +  L  
Sbjct: 1129 DELCQAIKNNIETSHIPVILLTALNNEKDILSGLQIGADEYVVKPFNIGILKANVANLLA 1188

Query: 120  MQKSKD 125
             +    
Sbjct: 1189 NRALLR 1194


>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
 gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   S+L+VD    + ++        G+ V +A    EA    +       +++D  M  
Sbjct: 1   MKQQSILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTND-IQLVLLDVMMPT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       R      ++ V +L  +      + G   GA+ ++ KPF+   L   ++   
Sbjct: 60  MDGVEVCRRIREKF-NIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +V+    + ++      + GF V   T+  E  +  E + +PN +++D  + G     
Sbjct: 6   VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTME-QTIPNIIILDIMLPGYDGVR 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  L  D+ + +L  + + E  I G  AGA+ ++ KPF+ + L   +R +    
Sbjct: 65  IAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRY 124

Query: 122 K 122
           K
Sbjct: 125 K 125


>gi|152995117|ref|YP_001339952.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinomonas sp. MWYL1]
 gi|150836041|gb|ABR70017.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinomonas sp. MWYL1]
          Length = 331

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LLVD      +V R +     + +  A S  +A +  EKE + + +++D  M  +  L
Sbjct: 10  RILLVDDEPSNLRVLRQVLQAARYRLSFARSGQDALKLVEKEPV-DLILLDIMMPNMTGL 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++Q P    + V ++    D      G   GA  +++KP     +   ++    +
Sbjct: 69  EVCERLKQNPATAHIPVIFVTALKDSIDEAKGFEIGAVDYIVKPIVPAIVLARVKTHLSL 128

Query: 121 QKSKD 125
            ++ +
Sbjct: 129 IRADE 133


>gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      + G+    A +  EA      +   + +++D  M  +   
Sbjct: 2   KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDGM 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              VR++   + + +  L  + D    I G   GA+ ++ KPFN   +   ++ L +  +
Sbjct: 62  -QVVREVRKDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRSE 120

Query: 123 ---SKDENQFLD 131
              + DE + LD
Sbjct: 121 KDMTADEPEILD 132


>gi|319901758|ref|YP_004161486.1| two component transcriptional regulator, AraC family [Bacteroides
            helcogenes P 36-108]
 gi|319416789|gb|ADV43900.1| two component transcriptional regulator, AraC family [Bacteroides
            helcogenes P 36-108]
          Length = 1361

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LL+V+    +R   + +F    + +  AT+  E  +    E  P+ ++ D  M     
Sbjct: 1104 KTLLIVEDHKDIRLYLKVIFGKE-YNLLFATNGQEGIDTAV-EGQPDLVLCDVMMPVKDG 1161

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    +++      + +  L  +V+ + ++ G   GA+ ++LKPF    L+  +R L  
Sbjct: 1162 FECCRELKEGLSTCHIPIIMLTAKVEDDDILHGLELGADDYVLKPFTPGILQAKVRNLIN 1221

Query: 120  MQKSKDEN 127
             +      
Sbjct: 1222 ARVLLKRM 1229


>gi|317504746|ref|ZP_07962706.1| two component system sensor histidine kinase [Prevotella salivae DSM
            15606]
 gi|315664128|gb|EFV03835.1| two component system sensor histidine kinase [Prevotella salivae DSM
            15606]
          Length = 1319

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            ++L+V+ +  +R++   + + + F    A    E  E   ++++P+ ++ D  M     L
Sbjct: 1070 TILIVEDNDDIRQLLVTVLSPY-FHTVTAVDGREGLE-VTRDVMPDIIISDVLMPHLSGL 1127

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +++      + V  L  +    + + G + GA+ ++ KPFN E L      L   
Sbjct: 1128 ELCKMIKEDLSICHIPVILLTAQTALNQELEGLKIGADDYITKPFNNEVLVSRCNNLINS 1187

Query: 121  QKSKD 125
            ++   
Sbjct: 1188 RRLLQ 1192


>gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 236

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    + ++         + V   +S     E       P+ LV+D  M G+ 
Sbjct: 1   MTKIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTN-RPDCLVLDIMMPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + + Q+   T++ +  +    +    I G   G + FL KPFN   L   ++ + ++
Sbjct: 60  GL-SLLTQLREFTEMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRL 118

Query: 121 QKS 123
            K+
Sbjct: 119 SKA 121


>gi|264678133|ref|YP_003278040.1| response regulator receiver protein [Comamonas testosteroni CNB-2]
 gi|262208646|gb|ACY32744.1| response regulator receiver protein [Comamonas testosteroni CNB-2]
          Length = 173

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +RK+ R       F V E  +  EA E   +   P+ +++D  M G  
Sbjct: 51  MKKILIVEDHADIRKLIRMTLEFRDFEVQEVATGDEAWE-VTQRTKPDVVLLDVMMPGKL 109

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    ++      D  V  L      +   AG  AGA+ +L+KPF+   L   +  L
Sbjct: 110 SGLEVCQLIKDSDDLRDTQVIMLTARGSADDRQAGLNAGADEYLVKPFSTLKLLEVIESL 169

Query: 118 PQ 119
            +
Sbjct: 170 ER 171


>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +         F V    +  EA E+ E     + +V+D  +  +  +
Sbjct: 2   RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTY-DLIVLDIMLPKLNGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +      +  V  L      +  I G   GA+ +L+KPF+   L   +R L + +
Sbjct: 61  EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRK 119


>gi|258514837|ref|YP_003191059.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778542|gb|ACV62436.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD   +  KV   L  +  + +  ATS   A E   K   P+ +++D  M G+ 
Sbjct: 1   MNKVLIVDDVPVSIKVLGELLKEH-YEILVATSGSRAIEVALKN-QPDLILMDVVMPGMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++  L  ++ V +L    +   +I G   G   +++KPFN+  +   ++   
Sbjct: 59  GLETCRRLKENTLTAEIPVIFLTAMSESSDVIKGFEVGGQDYVVKPFNKIEVIARVKNHM 118

Query: 119 QMQKSKDE 126
           +++KSK++
Sbjct: 119 ELRKSKEK 126


>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDENQFLD 131
            +K     + L+
Sbjct: 119 SRKVTK--RLLE 128


>gi|258404235|ref|YP_003196977.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
 gi|257796462|gb|ACV67399.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfohalobium retbaense DSM 5692]
          Length = 448

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+D      KV        G+ V  A           +E   + L+ D  +  +  
Sbjct: 5   KRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHL-QEGGWDMLITDLKLPDITG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +       + V  +         +   + GA ++L KP + + L   ++ + +  
Sbjct: 64  LDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFERS 123

Query: 122 KSKDENQFL 130
           +  +ENQ +
Sbjct: 124 QLLEENQTM 132


>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 227

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +     F          A E   +E  P+ +++D  + G   +
Sbjct: 4   KILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEK-PDLVLLDLMLPGKDGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     + V +  L  + D   ++ G  AGA+ ++ KPF  + L   +R   + 
Sbjct: 63  EVCREIR---RTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQ 119

Query: 121 QKSKDENQF 129
               ++ + 
Sbjct: 120 SDDGEQERL 128


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R       F V       +  E        + +++D  + G+ 
Sbjct: 1   MKKILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGG-FDLVILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V  +         I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFNVCRRLREEL---DIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHI 116

Query: 119 QMQKSKDENQF 129
              +     + 
Sbjct: 117 ARYEQLTRKEQ 127


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA +          +++D  M     
Sbjct: 3   KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI-STYEIELMILDIMMPKRNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 62  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 240

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +RK+        GF    A S  E  E C      + +V+D  +     L+
Sbjct: 7   VLVVDDDQEIRKLLARYLLSQGFRTTVAASGRE-MEECLASSRFDMVVLDLMLPDASGLD 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    +    I G   GA+ +L KPFN   L   +R + +  
Sbjct: 66  LCRALRARSR---LPIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRA 122

Query: 122 KSKDE 126
             ++E
Sbjct: 123 TEREE 127


>gi|91202235|emb|CAJ75295.1| similar to two component response regulator [Candidatus Kuenenia
           stuttgartiensis]
          Length = 271

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+     R +     N+ G +   A +   A     ++  P+ +++D  M  +   
Sbjct: 6   RILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQP-PDIILLDIMMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + H++       + V  +    D + ++     GA+ +L KPFN   L+  +      
Sbjct: 65  EVLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPVLLKARIDSCLMK 124

Query: 121 QKSKDENQF 129
           ++  D+ + 
Sbjct: 125 KRLHDQEEQ 133


>gi|91218136|ref|ZP_01255085.1| hybrid sensory kinase [Psychroflexus torquis ATCC 700755]
 gi|91183683|gb|EAS70077.1| hybrid sensory kinase [Psychroflexus torquis ATCC 700755]
          Length = 366

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M    +L+++ +  +R+  R + +  G  VF A +  E  +   KE LP+ ++ D  M  
Sbjct: 1   MRKYNILVIEDTKSIREELRDILSFEGMQVFTAENGQEGIDKA-KEHLPDLILCDIMMPL 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               E  A ++ +         +L  +   E +  G   G + ++ KPF+ + L  +++ 
Sbjct: 60  KNGFEVFATIQNINAIKHTPFIFLTAKATVENIREGMILGVDDYITKPFDIDLLIKSVKS 119

Query: 117 LP--QMQKSKDENQFLDAI 133
               + ++ + EN  L+ +
Sbjct: 120 RLFKEKKRKQFENNKLETL 138


>gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1]
 gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1]
          Length = 231

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V         + V  A       E   +   P+ +++D  + G+  
Sbjct: 4   KRVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGR-WQPDLILLDIMLPGMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +A +R+     D  V  +    D    I   R GA+ +++KP++   +   ++ + +
Sbjct: 63  TEVLAALRRRD---DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 120 MQKSKD 125
             +S  
Sbjct: 120 RSQSHA 125


>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  + +      GF V  A       E   KE   + +++D  +  V 
Sbjct: 1   MSKILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEY-DLIILDLMLPEVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VRQ     ++ +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFDICRQVRQE---KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHM 116

Query: 119 QMQK 122
           +   
Sbjct: 117 ERYN 120


>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 227

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R      GF V              + L P   V+D ++ G    E
Sbjct: 10  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARR-LRPVACVLDIALPGLAGTE 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G    V +L    D    + G   GA+ ++ KPF+   L   +R + +  
Sbjct: 69  ICRRLRA--AGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRT 126

Query: 122 KS--KDENQFLDAI 133
                ++ + L A+
Sbjct: 127 AGVPAEQPRTLGAV 140


>gi|261410004|ref|YP_003246245.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261286467|gb|ACX68438.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1045

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           +LL++D   +  +V   +     + V  ATS  EA    + +   + ++ D  M  +   
Sbjct: 721 TLLIIDDDPVNLQVLEAILPPDEYEVTMATSGKEALAVLDAKEW-DLVISDIMMPQMSGY 779

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T++ V  L      + + +G  AGAN ++ KP     +R  +  L  +
Sbjct: 780 ELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEALEIRSRIEALTTI 839

Query: 121 QKSKDENQFLDA 132
           +++  E   L+A
Sbjct: 840 KQTVREQLRLEA 851


>gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R V        G     A +  EA     +  + +  ++D  M  + 
Sbjct: 1   MLRILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNV-DLAILDIGMPEMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + V +     D    + G   G + ++ KPF+   L   ++ + 
Sbjct: 60  GLEVCRRIRTESA---LPVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAIL 116

Query: 119 QMQKSKDENQFL 130
           +        Q L
Sbjct: 117 KRANGTAGEQQL 128


>gi|281418386|ref|ZP_06249406.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
 gi|281409788|gb|EFB40046.1| response regulator receiver sensor signal transduction histidine
           kinase [Clostridium thermocellum JW20]
          Length = 363

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V   +  D  F +  AT    A +   ++  P+ +++D  M  +  F 
Sbjct: 12  ILIVDDIPEHIDVAVQVLRDSNFKIRVATDGNTALKLIYQQK-PDLILLDIYMPEMDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
               ++  P   ++ V +L    D E +  G  +G   +++KPFN   L   ++      
Sbjct: 71  LCRLIKNTPDLKNIPVIFLTSFSDEESIRKGFESGGQDYVVKPFNASELLSRVKTHLMLK 130

Query: 119 -QMQKSKDENQFLDA 132
            Q +  K+ N+ LD+
Sbjct: 131 CQAESLKEANKELDS 145


>gi|171910558|ref|ZP_02926028.1| putative phytochrome sensor protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 472

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+V+ ++I+     +     GF V  A    E      +E LP+ +++D  M  +  +
Sbjct: 34  RILVVEDANIIALAMSYALEGAGFHVELAADGEECIVKV-REDLPDLILLDIMMPKMNGI 92

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           E +  +R      D+ V     +    +  A A  GA  +L+KPFN   L   +    
Sbjct: 93  EALKILRADEKTKDLPVIVCSAKDFKTERQAAAELGALDYLIKPFNPADLVRKVSAAL 150


>gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32]
 gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32]
          Length = 229

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL+D    +  + + + +  GF V EA       E    E   + +++D  M  + 
Sbjct: 1   MANILLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAINDE--IDLILLDVMMPRLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++    +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GM-ETLKKLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QK 122
            +
Sbjct: 118 TQ 119


>gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
 gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
           HGF5]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +RK+    F   G+ V  A +  EA +  E+   P+ +++D +M    
Sbjct: 1   MHKILIVDDEADLRKLLTDYFEINGYFVMTAKNSREAMQKVEQG--PDLVLLDINMPEEN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         + +L   ++    IAG RAG + ++LKPF+   L   +    
Sbjct: 59  GLEICERIR---GFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHL 115

Query: 119 QMQK 122
           + ++
Sbjct: 116 RREQ 119


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ E L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRR 118


>gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 238

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+       + G+ V  A +  E  +      + +  ++D  M  +   
Sbjct: 4   TVLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDV-HLAIVDIMMPIMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              + ++    D  V +L  + +    I G   GA+ ++ KPF    L   +R   +  +
Sbjct: 63  TMTM-ELRKNYDFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRRYE 121

Query: 123 S 123
            
Sbjct: 122 Q 122


>gi|288801698|ref|ZP_06407140.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
 gi|288335740|gb|EFC74173.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           melaninogenica D18]
          Length = 878

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D +  +R   R + ++  + V EA       E   K ++P+ ++ D  M  +    
Sbjct: 637 VLIIDDNVDIRTYLRSVLSEK-YNVSEAADGKAGLELARK-IVPDIVLSDIMMPVMDGLA 694

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++     + + V  L      E+   G   GA+++L KPF+   L   +  L Q +
Sbjct: 695 FCQQLKTDKAISHIPVILLTARSLDEQRAEGYEHGADAYLSKPFSLRLLFSRIDNLIQSR 754

Query: 122 KSKDEN 127
           K   + 
Sbjct: 755 KKLSKL 760


>gi|16330817|ref|NP_441545.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1653310|dbj|BAA18225.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 603

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD +     +        G  V    S  +A    + +   + +++D  M      
Sbjct: 191 KILVVDDNPSNLDLFFQHLTRKGHAVTTCLSAKDALGLLQSQNY-DLILLDLLMPETNGD 249

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+ +++       + V  +    +FE +I     GA  FL KPF+   L+  +    + 
Sbjct: 250 QFLEYLKTSVEFQHIPVIIVSALDEFESIIRCIEMGAEDFLPKPFDPVLLKARIGSSLEK 309

Query: 121 QKSKDENQF 129
           ++ +D+ + 
Sbjct: 310 KRLRDQEKL 318


>gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 244

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      + G+ V  A     A +   +    + +V+D  M G    
Sbjct: 10  RILVVDDDPELRALLTRFLGEHGYAVR-AVDGGRAMDSALQRDPADVIVLDLMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L    D    + G   GA+ +L KPF    L   +  + + 
Sbjct: 69  AVLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRR 126


>gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 234

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|282858981|ref|ZP_06268119.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588261|gb|EFB93428.1| response regulator receiver domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    + ++ +    + G+ V  A S  EA          +  ++D  M  +  
Sbjct: 4   NRILVVDDEQDLCEIMQFNLENEGYQVAVAYSAEEALAR-TDLPTFHLFILDIMMGEMSG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++Q P      + ++        +I G   GA+ ++ KPF+   L   ++ + +
Sbjct: 63  FKLAQKLKQDPATNQAAIIFVTARDTENDIITGLTLGADDYMAKPFSVRELILRVKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|282878622|ref|ZP_06287396.1| sensor histidine kinase/response regulator [Prevotella buccalis
           ATCC 35310]
 gi|281299257|gb|EFA91652.1| sensor histidine kinase/response regulator [Prevotella buccalis
           ATCC 35310]
          Length = 953

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+V+ +  V +          + ++ A    E  E     L+P+ ++ D  M     L
Sbjct: 703 SVLVVEDNADVARYIGMQIGHE-YQLYFAHDGVEGLEKALS-LMPDLILTDLLMPRKDGL 760

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++   +   + V  +         + G  AGA+++L+KPF+ + L+  +R L + 
Sbjct: 761 EMCCEIKMSEVLNHIPVIMITARSTDADKLKGLEAGADAYLVKPFSADELKLRIRNLIRQ 820

Query: 121 QKSKDENQFLDA 132
           ++   E   L +
Sbjct: 821 REVMREKYALSS 832


>gi|237712214|ref|ZP_04542695.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237726360|ref|ZP_04556841.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434886|gb|EEO44963.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229453535|gb|EEO59256.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 379

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L  +  F V  A +  EA         P+ +++D  M  +  F
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 74  EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133

Query: 121 QKSKD 125
             +K 
Sbjct: 134 VAAKR 138


>gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESME 57
           M    +L+V+    + +         G+ V  A +  EA     KE    + +++D  M 
Sbjct: 1   MKKNRILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMP 60

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                E +  +R+    +++ V  L      E  ++G   GA+ ++ KP+  E +R  + 
Sbjct: 61  DISGYEVLKEIRK---TSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIE 117

Query: 116 ELPQM 120
            + + 
Sbjct: 118 AVLKR 122


>gi|121603888|ref|YP_981217.1| response regulator receiver protein [Polaromonas naphthalenivorans
           CJ2]
 gi|120592857|gb|ABM36296.1| two component transcriptional regulator, LuxR family [Polaromonas
           naphthalenivorans CJ2]
          Length = 336

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  ATS   A +   ++ +P+ +++D  M G+  F 
Sbjct: 18  VLIVDDVPDNLAVLHDALDESGYTVLVATSGEAALQRA-RQAVPDIVLLDAMMPGMDGFE 76

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++ MP    + + ++    + E ++A  +AG   ++ KP   + +   M    Q  
Sbjct: 77  VARRLKAMPETAHIPIIFMTGLTETEHLVAALQAGGVDYVTKPIKPKEVMARMGVHLQGA 136

Query: 120 ---MQKSKDENQFLDAI 133
               Q+++   Q  +A+
Sbjct: 137 RRARQEARQAGQARNAL 153


>gi|117923749|ref|YP_864366.1| response regulator receiver protein [Magnetococcus sp. MC-1]
 gi|117607505|gb|ABK42960.1| response regulator receiver protein [Magnetococcus sp. MC-1]
          Length = 373

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+       +        G+ V  A     A E  +    P+ +++D  + G   
Sbjct: 8   RKILIVEDDETSAWLLESFLRSEGYEVILARDGFAAVERYQSAD-PDLIIMDILLPGQDG 66

Query: 62  --FIAHVRQMPLGTD--VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 +R +    D    + +L       ++      G + F++KPFN   L+  +  L
Sbjct: 67  YAATEQIRAITRNEDSPPPIIFLTAIESDAELARCLDCGGDDFVVKPFNPIILKARIHSL 126

Query: 118 PQMQKSKDENQF 129
            +     +E Q 
Sbjct: 127 LERLALAEEKQL 138


>gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 679

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD      ++ R       +++ EAT+   A     +E +P+ +++D  M  
Sbjct: 1   MKANKILIVDDQKFALQMLRDTLAPLHYVIEEATNGASAVSKA-QEFMPDIILMDLVMPE 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        ++Q      + V  +    + + ++A   AG + ++ KPF+ + L   +R 
Sbjct: 60  MDGVEACRRIKQDMHTATIPVIVITASKEKDNLLAAFAAGIDDYITKPFSDKELLARIRA 119

Query: 117 LPQMQKSKDENQF 129
               +++    + 
Sbjct: 120 NLFKREAIAMMEL 132


>gi|320160764|ref|YP_004173988.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994617|dbj|BAJ63388.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 253

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+       + + +    G+ V  A +  EA + C  ++ P+ +++D  M  +  
Sbjct: 27  QTILVVEDEPDTVFLLKQILRMAGYNVLSAVNGYEAIQKCM-DIHPDLILLDLMMPEMDG 85

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    + +   TDV V  +    + E ++   R G + ++ KPF    +   ++ + +  
Sbjct: 86  W-QTYQYLREATDVPVIVISAIHNKEDVVRALRIGMDDYITKPFVNAEVVARVQAVLRRA 144

Query: 122 KSKDENQFL 130
           +   ++  L
Sbjct: 145 RPTKQSDRL 153


>gi|319790077|ref|YP_004151710.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Thermovibrio ammonificans HB-1]
 gi|317114579|gb|ADU97069.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Thermovibrio ammonificans HB-1]
          Length = 452

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +R V +      G  V EA++  EA     +E  P+   ID  M  + 
Sbjct: 1   MAKILVADDEKSIRLVLKKYLTSKGHSVIEASNGEEAL-KAIREQKPDVAFIDIKMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 R      ++ V  L      E  +     GA  +L KPF+ E +   + ++ 
Sbjct: 60  GLSLLKRV----KEIPVVILTAYGTMEYTVKAMELGAVDYLTKPFSFEEIEEVLSKIL 113


>gi|237716456|ref|ZP_04546937.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229444103|gb|EEO49894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1464

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1263

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D +        GAN+++ KPF++E L   + +L   
Sbjct: 1264 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1324 RKLFRERIRQQMENQ 1338


>gi|255039089|ref|YP_003089710.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254951845|gb|ACT96545.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L ++    +  + +      GF V  A +  E  E       P+ +V D  M  + 
Sbjct: 1   MATVLFIEDEPALGMIVKDSLTYRGFEVLYAANGVEGLEQFRLH-RPDIVVADIMMPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F            V + +L        ++ G   G N +L KPF+ E L   +  L +
Sbjct: 60  GFTMAEHIRRDDPHVPIMFLTARSQTADVVRGFELGGNDYLKKPFSLEELIVRINALLR 118


>gi|212691339|ref|ZP_03299467.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855]
 gi|212666092|gb|EEB26664.1| hypothetical protein BACDOR_00831 [Bacteroides dorei DSM 17855]
          Length = 379

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L  +  F V  A +  EA         P+ +++D  M  +  F
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 74  EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133

Query: 121 QKSKD 125
             +K 
Sbjct: 134 VAAKR 138


>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
 gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
          Length = 235

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      + G+ V++  +  +A +  E E + +  ++D  +  V  F
Sbjct: 4   KILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKM-DLAILDVMLPDVDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +V+    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  HICQKIRERYFY---PIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRR 119


>gi|15642687|ref|NP_232320.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121726722|ref|ZP_01679947.1| transcriptional regulator CpxR [Vibrio cholerae V52]
 gi|147675245|ref|YP_001218180.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|227082808|ref|YP_002811359.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
 gi|229507260|ref|ZP_04396765.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae BX 330286]
 gi|229509818|ref|ZP_04399299.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae B33]
 gi|229516940|ref|ZP_04406386.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC9]
 gi|229527383|ref|ZP_04416775.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae 12129(1)]
 gi|229606767|ref|YP_002877415.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae MJ-1236]
 gi|254851228|ref|ZP_05240578.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
 gi|255744348|ref|ZP_05418300.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholera CIRS 101]
 gi|262158542|ref|ZP_06029657.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae INDRE 91/1]
 gi|262170064|ref|ZP_06037753.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC27]
 gi|298500492|ref|ZP_07010296.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
 gi|9657287|gb|AAF95833.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630883|gb|EAX63265.1| transcriptional regulator CpxR [Vibrio cholerae V52]
 gi|146317128|gb|ABQ21667.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|227010696|gb|ACP06908.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
 gi|227014580|gb|ACP10790.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|229335015|gb|EEO00500.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae 12129(1)]
 gi|229346003|gb|EEO10975.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC9]
 gi|229353292|gb|EEO18231.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae B33]
 gi|229354765|gb|EEO19686.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae BX 330286]
 gi|229369422|gb|ACQ59845.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae MJ-1236]
 gi|254846933|gb|EET25347.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
 gi|255737873|gb|EET93266.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholera CIRS 101]
 gi|262021472|gb|EEY40184.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC27]
 gi|262029703|gb|EEY48352.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae INDRE 91/1]
 gi|297540661|gb|EFH76718.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
 gi|327485164|gb|AEA79571.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae LMA3894-4]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + +A            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           +LLLVD    V +         GF +  A +  EA E    E  P  +V+D  +  +  +
Sbjct: 4   TLLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKA-GEKKPALVVLDWMLPEMSGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+M       +  +    +    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 63  EVCRELRKMSRMG---IIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRR 119

Query: 121 QK----SKDENQF 129
            +    ++ + Q 
Sbjct: 120 MEGLEFTEQQMQR 132


>gi|332531423|ref|ZP_08407327.1| winged helix family two component transcriptional regulator
           [Hylemonella gracilis ATCC 19624]
 gi|332039092|gb|EGI75514.1| winged helix family two component transcriptional regulator
           [Hylemonella gracilis ATCC 19624]
          Length = 242

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  +       FGF V  A+    A      +   + +V+D  + G    
Sbjct: 6   RVLLVDDDESITGLLSDYLAGFGFEVRIASDG-SAMRAALAQDEADLVVLDVMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +           + +  L    +    + G   GA+ +L KPF    L   +R + + 
Sbjct: 65  VLSRELRRQYARLPIIMLTARAEAYDRVIGLEMGADDYLCKPFEPRELVARIRTVLRR 122


>gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    +      +     + V       +A  + E E   + +++D  +     +
Sbjct: 2   RILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENY-DAVILDIMIPKIDGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+   G  + V  L  + + +  + G  +GA+ +L KPF  + L   +R L + 
Sbjct: 61  EVLKTIRK--EGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRR 118

Query: 121 QKSKDEN 127
            +   EN
Sbjct: 119 GEQLTEN 125


>gi|302795646|ref|XP_002979586.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
 gi|300152834|gb|EFJ19475.1| hypothetical protein SELMODRAFT_419211 [Selaginella moellendorffii]
          Length = 862

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVL 60
             +LLV+ + + +KV   L   +G +V   +   EA E  +      + +++D  M G+ 
Sbjct: 728 KRVLLVEDNLVNQKVASRLLQKYGHVVITVSDGLEAVEALKSDHKAYDLVLMDIQMPGMD 787

Query: 61  EF--IAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                  +R+         + +  L              AG + +L KPF+ + +   +R
Sbjct: 788 GLEATRRIRKDELGSGWQKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 847


>gi|294777012|ref|ZP_06742470.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|294449070|gb|EFG17612.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
          Length = 379

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L  +  F V  A +  EA         P+ +++D  M  +  F
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 74  EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133

Query: 121 QKSKD 125
             +K 
Sbjct: 134 IAAKR 138


>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
 gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
          Length = 226

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +  +        G+            +    +   + +++D  +  +  F
Sbjct: 4   NILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQP-FDAVILDVMLPKLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +    +  V  L    D    I G   GA+ +L KP N   L   +R + +  +
Sbjct: 63  -EVLKSIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121


>gi|223674577|gb|ACN12984.1| PhoP [Streptomyces clavuligerus ATCC 27064]
          Length = 175

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  A +  E  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|206889241|ref|YP_002249148.1| two-component response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741179|gb|ACI20236.1| two-component response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 122

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+VD +   R++ + +    G+ V EA    +A         P+ +++D S+    
Sbjct: 1   MKTILVVDDNEDSRELVKKILKKHGYEVIEAVDGEDAIAKALA-YRPDLILMDISIPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +++ P   D  +                +AG N ++ KP N       ++   
Sbjct: 60  GYEATRRLKERPDFKDTPIIAFTAHAMRGDQEKALQAGCNGYISKPINVREFPEQIKIYL 119

Query: 119 QMQ 121
           + +
Sbjct: 120 KEK 122


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +  V+    +R++  +     GF         E  E    E  P  +++D  + G+    
Sbjct: 2   IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALET-PELILLDIMLPGMDGLE 60

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            ++ ++  P   D+ V  L  +      +    AGA+ ++ KPF    L   ++ + +  
Sbjct: 61  LLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRT 120

Query: 122 KSKDEN 127
           +   ++
Sbjct: 121 QKDTQD 126


>gi|186682208|ref|YP_001865404.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464660|gb|ACC80461.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 371

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD +    ++   +  + G+ V   T+   A    + +  P+ +++D +M G+   E
Sbjct: 11  ILIVDDTLDNLRLLSAMLTEQGYEVRSVTNGSMALIGIQAQP-PDLILLDITMPGMNGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   ++ V ++    +    +     G   F+ KPF  E +   M    ++ 
Sbjct: 70  VCQRLKSNPQTQEIPVIFISALNEVFDKVKAFSVGGVDFINKPFQIEEVVARMEHQLKLC 129

Query: 122 K----SKDENQFLDA 132
           +     +++N+ L  
Sbjct: 130 RLQMQLQEQNRRLQE 144


>gi|301059812|ref|ZP_07200706.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [delta proteobacterium NaphS2]
 gi|300446138|gb|EFK10009.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [delta proteobacterium NaphS2]
          Length = 246

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +  +      G+ V  A     A +  E +  P+ +V+D  +  +    
Sbjct: 8   ILVVEDEAHLAEGLKLNLALKGYDVRIAMDGTSALQTWE-QWRPDLIVLDIMLPEIDGLS 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +       + +  L    D +  + G   G + +L KPFN +     ++ L   
Sbjct: 67  VLRKIRLEDERIPILILSARGDPDDRVKGFTYGVDDYLAKPFNLDEFLLRVKRLLTR 123


>gi|297193586|ref|ZP_06910984.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151835|gb|EFH31368.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 184

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+V+          ++    GF V  AT+  +  +  E+    + +++D  + G    E 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGA-DLVLLDLMLPGLPGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     ++V V  +  +      + G   GA+ ++ KPF+   L   +R + + + 
Sbjct: 61  CRQLRGR---SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRG 117

Query: 123 SKDE 126
             +E
Sbjct: 118 EPEE 121


>gi|296133268|ref|YP_003640515.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola sp. JR]
 gi|296031846|gb|ADG82614.1| response regulator receiver modulated diguanylate cyclase
           [Thermincola potens JR]
          Length = 301

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+ + +     +      G+ V    +  +AR F  +E  P+ +++D  +      E
Sbjct: 8   ILIVEDNPLTANQLKSFLETVGYKVSLCLNAEQARNFLTEET-PDLIILDIILPDTDGYE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      + + ++  +   +  + G +AG + ++ KPF  E L   +  + Q  
Sbjct: 67  LCRWIREETRLRLIPIIFVSAKDGLDDKVVGLQAGGDDYITKPFAMEELLARIEVILQRM 126

Query: 122 KSKDENQFLDAI 133
           +   E    D +
Sbjct: 127 RVFHELSMRDEL 138


>gi|288927115|ref|ZP_06421002.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one component system) [Prevotella
            buccae D17]
 gi|288336121|gb|EFC74515.1| putative two-component system sensor histidine kinase/response
            regulator, hybrid (one component system) [Prevotella
            buccae D17]
          Length = 1343

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
             L++V+ +  +R   RH+F    + V +      A E+ + + + + +V D  M G    
Sbjct: 1080 RLMVVEDNGDLRFYLRHIFEQE-YEVVDKPDGDAALEYLKSQTV-DLIVSDIMMPGIQGD 1137

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++Q    + + V  L  +   + M+ G   GA+ F+ KPF+ + L+  +R +   
Sbjct: 1138 EMCRLIKQNVETSHIPVILLTAKAGRDHMLKGLEGGADDFIAKPFDADVLKAKVRTMIHN 1197

Query: 121  QKSKDE 126
            +    E
Sbjct: 1198 RNRLRE 1203


>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
 gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
          Length = 281

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      +  + VF+  +  EA E  +K  + +  ++D  +  V   
Sbjct: 54  KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 112

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 113 TICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 169

Query: 121 QK 122
            K
Sbjct: 170 YK 171


>gi|209528024|ref|ZP_03276505.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491543|gb|EDZ91917.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 254

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC--EAREFCEKELLPNYLVIDESMEG 58
           M  +L++D    + ++        G+ V  A      +A    +       L +      
Sbjct: 1   MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQAL-ALQLLPDLIILDLMLPKVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTGDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|190892751|ref|YP_001979293.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698030|gb|ACE92115.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|327188375|gb|EGE55592.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 233

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      + GF V  A    EA+      L  + +++D  M G   ++
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +    +V +  L    +    I G  AGA+ +L KPF+   L   +  + + 
Sbjct: 73  VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|170693170|ref|ZP_02884331.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170142168|gb|EDT10335.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 237

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + ++++D    +R + +      GF V       +  +   +    + LV+D  ME    
Sbjct: 5   NRIIVLDDEAELRNMLQRFLTGHGFHVRVVADGKQ-LDRYLQREPYDLLVLDLMMEPEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + +  L  + D    + G   GA+ +L KPF  + L   +R L + Q
Sbjct: 64  LTICRRLRAEGQTLPILMLTAKGDPVDRVVGLETGADDYLAKPFLPDELVARIRALLRRQ 123

Query: 122 KSKD 125
           K   
Sbjct: 124 KMAA 127


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    +    + +     + V    +  +A ++    +  + +++D  M  +  F
Sbjct: 2   RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVY-DGVILDVMMPKMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +    G DV V  L  + + +  I G   GA+ +L KPF  + L   +R + + +
Sbjct: 61  TVLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRK 119


>gi|254881616|ref|ZP_05254326.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319643000|ref|ZP_07997634.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834409|gb|EET14718.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385365|gb|EFV66310.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 379

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L  +  F V  A +  EA         P+ +++D  M  +  F
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 74  EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133

Query: 121 QKSKD 125
             +K 
Sbjct: 134 IAAKR 138


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +           G+      +  E  +    E   + +++D  +    
Sbjct: 1   MSRILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDW-DAILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ        +  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLEVCRRLRQS---KSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVL 116

Query: 119 QMQKSKDEN 127
           +    +++N
Sbjct: 117 RRVDFENDN 125


>gi|156743077|ref|YP_001433206.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
 gi|156234405|gb|ABU59188.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
          Length = 200

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +     +        G+ V        A +     + P+ +V+D  M G+  F
Sbjct: 7   TILVVDDTPANLALLFTGLRRAGYKVLINERGDVALQTAI-NVQPDLIVLDVMMPGMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P   D+ V  +    D  + + G RAGA  ++ KP N + +   +     +
Sbjct: 66  ETCRRLKADPRTKDIPVILMTALTDAIEEVTGLRAGAVDYITKPINVDVVLARINTHLTL 125

Query: 121 QKSKDENQF 129
           +K     + 
Sbjct: 126 RKLYRNLEQ 134


>gi|86358612|ref|YP_470504.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282714|gb|ABC91777.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 233

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R +      + GF V  A    EA+      L  + +++D  M G   ++
Sbjct: 14  LLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKL-AGLDFDLIIMDVMMPGESGID 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R +    +V +  L    +    I G  AGA+ +L KPF+   L   +  + + 
Sbjct: 73  VTRGLRAI---KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128


>gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 214

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+ D    +R          G+    A    +A E       P+ L+ D +M  +   
Sbjct: 4   TVLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMI-HHYQPHLLITDIAMPNMNGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ P    + V YL    + E+ I   R G + +L KPF+   L   +R L   
Sbjct: 63  ELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNLLDR 122

Query: 121 QKS 123
            + 
Sbjct: 123 AQL 125


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+    +    R+     GF V  A SV E  +    +  P+ +V+D  +    
Sbjct: 1   MQRLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAF-SQDRPDLVVLDVGLPDGT 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R         + +L    +  +++ G   G + ++ KPF    L   +R L 
Sbjct: 60  GFDLCRQIRVENG---TPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 219

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ +  +    R +    G++V  A    EA  F E     + +++D  +  +   
Sbjct: 2   KILLVEDNLDLNNTIREVLELNGYIVDSAFDGKEALNFAENSSY-DVIILDLMLPDIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    V  L  +   +  I G   GA+ ++ KPF+ + L   +R + +   
Sbjct: 61  EVLKTIRSKGIYTPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGRRAS 120

Query: 123 SKDENQFL 130
           ++ ++  L
Sbjct: 121 TEKKDIVL 128


>gi|298489943|ref|YP_003720120.1| response regulator receiver modulated diguanylate phosphodiesterase
           ['Nostoc azollae' 0708]
 gi|298231861|gb|ADI62997.1| response regulator receiver modulated diguanylate phosphodiesterase
           ['Nostoc azollae' 0708]
          Length = 403

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    VR+    L     F    A +     +    + LP+ ++ D  M    
Sbjct: 1   MPKILVIEDEESVRENLLDLLQAEDFKTISADNGPIGLDLAISQ-LPDLILCDMMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ PL   +   ++  +        G   GA+ +L KPF R  L  A++   
Sbjct: 60  GYGVLTALRQEPLTATIPFIFITAKSAKSDFRQGMDLGADDYLTKPFTRSELLSAIKNKL 119

Query: 119 QM 120
           + 
Sbjct: 120 EK 121


>gi|194292783|ref|YP_002008690.1| response regulator in two-component regulatory system, ompr family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226687|emb|CAQ72638.1| response regulator in two-component regulatory system, OmpR family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 237

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + ++++D    +R + +      GF V       +  +   +    + LV+D  ME    
Sbjct: 5   NRIVVLDDEAELRNMLQRFLTGHGFRVRAVADGKQ-LDKYLQREPHDLLVLDLMMEPEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + +  L  + D    +AG   GA+ +L KPF  + L   +R L + Q
Sbjct: 64  LTICKRLRAEGHTLPILMLTAKGDPMDRVAGLETGADDYLAKPFVPDELVARIRALLRRQ 123

Query: 122 KSKD 125
           K   
Sbjct: 124 KMSA 127


>gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    + +      +  G +   A    EA     ++   + +V+D ++     +E
Sbjct: 9   LLIVDDDPKLLQFLLEELSQDGIVCQGANCGAEAL-LLLRQQRFDLVVLDWNLPDFNGIE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G    V  L    D E  +     GA+ ++ KPF    L   +R   +  
Sbjct: 68  ICRRLR--SSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRS 125

Query: 122 KSKDENQFLDAI 133
           +  + + F + +
Sbjct: 126 RYANPDAFAEPL 137


>gi|329954397|ref|ZP_08295489.1| putative transcriptional regulatory protein ResD [Bacteroides
           clarus YIT 12056]
 gi|328527665|gb|EGF54658.1| putative transcriptional regulatory protein ResD [Bacteroides
           clarus YIT 12056]
          Length = 229

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM--DISAYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKEKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  +  + I
Sbjct: 123 TQQAETERAPEQI 135


>gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
 gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
 gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 232

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F++KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 SRGGETEQIE 131


>gi|318062591|ref|ZP_07981312.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
          Length = 1307

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +  + G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1187 KVLIVDDDVRNVFALTSMLEENGLSVLYAENGREGIEVLEQHDEVRVVLMDIMMPEMDGY 1246

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+MP    + +  L  +           +GA+ ++ KP + + L  A+ +  + 
Sbjct: 1247 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDSGASDYVTKPVDPDRLLTALEKWLRT 1306

Query: 121  Q 121
            +
Sbjct: 1307 K 1307


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ + +A    EA E   KE   + L++D  M  + 
Sbjct: 5   MQTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVL-KENEVHLLIMDVMMPRLD 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  GIRATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 122


>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 279

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 53  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARR-FSPDVVVLDLGLPELDGL 111

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 112 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 168

Query: 121 QK 122
            +
Sbjct: 169 PR 170


>gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 256

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   ++ +V      + G  V  A     A +  +    P+ +++D  +  +  
Sbjct: 3   RRVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSS-QPDLVILDVMLPRLSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    V +L  +   E+ + G R G + ++ KPF+   L   ++ +    
Sbjct: 62  LDVCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRL 121

Query: 122 K 122
           +
Sbjct: 122 E 122


>gi|254513978|ref|ZP_05126039.1| adenylate cyclase 1 (ATP pyrophosphate-lyase 1) [gamma
           proteobacterium NOR5-3]
 gi|219676221|gb|EED32586.1| adenylate cyclase 1 (ATP pyrophosphate-lyase 1) [gamma
           proteobacterium NOR5-3]
          Length = 496

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L VD     R++        G  V  A    EA E        + +++D  M G+    
Sbjct: 144 ILAVDDREENRELLARYLTRSGHFVVTAPGGAEALEML-ANADVDVVLLDRMMPGMDGRE 202

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  P      V  +  E D + +I    AGA+ +L KPFN   L+  ++   + +
Sbjct: 203 VLRRIKAEPKLRATPVIMISGEQDMQGIIECIEAGADDYLFKPFNPVLLQARIKAGIERK 262

Query: 122 KSKDENQF 129
           +  D  Q 
Sbjct: 263 QWHDREQL 270


>gi|170761841|ref|YP_001786289.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408830|gb|ACA57241.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 223

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   KE   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDVLYKE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERR 127


>gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
           29799]
 gi|150274304|gb|EDN01381.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +        G+ + E      A E C +E   + +++D  + G+  +
Sbjct: 4   RILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVERC-REGGVDLVILDIMLPGLDGY 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +   +DV V  L +  + +  + G + G + F++KPF+   L + +  + + ++
Sbjct: 63  -EALRAIRTFSDVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAILKRRR 121


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++V+    +  + R+     G++V       EA +   KE +P+ L++D  + G   +
Sbjct: 4   RIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEA-DIRLKEEVPDLLILDWMLPGLSGV 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ      + +  L    +  + + G   GA+ +++KPF+   L   +R + + 
Sbjct: 63  ELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRR 122

Query: 121 QKSKDENQFLDA 132
            K +  +  L A
Sbjct: 123 SKPEKISSQLVA 134


>gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 231

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +      +  G+ + +A    EA E  EKE + N L+ID  M  + 
Sbjct: 1   MYKILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILEKEEV-NLLIIDVMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRATLKIREKNS-LPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARVKSQLRR 118


>gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 223

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R+         G+ V  A     A E        + +V+D ++  +  F
Sbjct: 2   KLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSY-DLIVLDINLPKIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                       V V  L    + +  + G   GAN +L+KPF+ E L   +R L + ++
Sbjct: 61  TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120

Query: 123 SKDENQFLDA 132
            + E+  L A
Sbjct: 121 LQ-EDTVLSA 129


>gi|288925386|ref|ZP_06419320.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288337857|gb|EFC76209.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 954

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ +  V      L +D  + +F A +     +  E  ++P+ ++ D  M  +  
Sbjct: 691 TRILIVEDNRDVAAYTGSLLSDR-YDLFYAANGKLGVKKAES-IVPDLIITDLMMPEMDG 748

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                HVR+  L + V +  +  +      I G  AGA+++L KPFN + L   + +L +
Sbjct: 749 LELCRHVRKTELISHVPIIVITAKTSEADRIKGLEAGADAYLDKPFNSDELCVRVEKLLE 808

Query: 120 MQKSKDE 126
            ++   E
Sbjct: 809 QRQLLRE 815


>gi|262407431|ref|ZP_06083979.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262354239|gb|EEZ03331.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1358

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGGEGERKAIEEN-PNLIISDIMMPKVDG 1163

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1164 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1223

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1224 QQEKRKQE 1231


>gi|242241244|ref|YP_002989425.1| DNA-binding transcriptional regulator CpxR [Dickeya dadantii
           Ech703]
 gi|242133301|gb|ACS87603.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 232

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A    +  +    L I    +  +
Sbjct: 1   MNKILLVDDDKELTSLLKELLEMEGFSVVVAHDGEQALSVLDDSIDLLLLDIMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQR---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLDA 132
               D+ Q  +A
Sbjct: 118 SNWTDQQQAGEA 129


>gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+     R +      +    V  A    E       + + + +V+D  + G     
Sbjct: 8   ILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRV-DLVVLDVMLPGEDGLS 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR       + +  L    +    I G   GA+ +L KPFN   L   +R + + Q
Sbjct: 67  LCRRVRASSP---LPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRRQ 123

Query: 122 KSKD 125
               
Sbjct: 124 SLAQ 127


>gi|29832199|ref|NP_826833.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29609317|dbj|BAC73368.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 282

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL++    + +        FG  V    +  E      +    + +++D  +  +   
Sbjct: 4   RVLLIEDDETIAEPLAEGLGHFGLTVDHVATGTEGL----RGPYGDVVLLDLGLPDMDGI 59

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+     V +  L    +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 60  DVCRGIRQVSG---VPIVILSARGEEADRVLGLELGADDYLAKPFSMRELVARVRAVTRR 116

Query: 121 QKSKD 125
            +   
Sbjct: 117 TQRAR 121


>gi|86609101|ref|YP_477863.1| sensor histidine kinase/response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557643|gb|ABD02600.1| sensor histidine kinase/response regulator [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 413

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD     R +  +     G+ V EA+S     +   +  + + +++D  M  +  F 
Sbjct: 34  VLVVDDERSQRLLVCYALEREGYQVLEASSGEACLQLAAQHPV-DMVLLDAVMPDLDGFE 92

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ---- 119
              R     +D+ +  +    D   +     AGA+ ++ KP     L+  +R L Q    
Sbjct: 93  CCRRLHAQNSDLPILIVTALEDESCVDEAFAAGASDYISKPIRWAVLKRRIRHLIQASQA 152

Query: 120 MQKSKDENQFLDA 132
            +  ++ NQ L+A
Sbjct: 153 QRHLRELNQALEA 165


>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
 gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
           [Streptococcus pyogenes]
 gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
 gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
 gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
 gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
 gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
 gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
 gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
 gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
 gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
 gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
 gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
 gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
 gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
 gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
 gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
 gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
 gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
 gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
 gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
 gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
 gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
 gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
 gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
 gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
 gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
 gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
 gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
 gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
 gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
 gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
 gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 236

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+  +    + G+ VF A +  E  E   +E   +  V+D  M  +   
Sbjct: 4   TILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRET-IHLAVVDIMMPVMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +       D  + +L  + +    I G   GA+ ++ KPF    L   +R   +  +
Sbjct: 63  TMTMEIRKKY-DFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYE 121

Query: 123 S 123
            
Sbjct: 122 Q 122


>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 233

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L+VD    + ++        G+ VF+A +  EA     K+   + +++D  M G+  L
Sbjct: 5   NVLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEAL-LIMKQEEIHLVLLDVMMPGMNGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  ELCRKIRES---SNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120

Query: 121 QKSKDEN 127
               + N
Sbjct: 121 YTQLNPN 127


>gi|255034928|ref|YP_003085549.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254947684|gb|ACT92384.1| GAF sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1142

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LLL D           +  D GF +  AT+  EA    E       +++D  M  +  
Sbjct: 1021 KKLLLADDDMRNIFALSAVLEDAGFSIEIATNGKEAINKLEDYPEIELILMDVMMPEMDG 1080

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+P   ++ +  +  +           AGAN ++ KP + + L   ++   
Sbjct: 1081 IEATRRIRQVPRWANIPIIAVTAKAMQGDREQCLEAGANDYISKPVDVDKLLSLIKVWL 1139



 Score = 73.3 bits (180), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LLL++   I            GF V  A+S  +A E       P  +++D  +  +   
Sbjct: 749 RLLLIEDDTIFAADMASKAQGSGFEVVIASSGRQALEMV-TGFDPTAIILDMHLPDMSGE 807

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
             +  ++       + V+ +     F+      + GA  F+ KP +  
Sbjct: 808 EVLKALKNDSRTRLIPVHTVSSGDYFD--EEMIKNGAIGFMQKPVDER 853



 Score = 64.4 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++      K            V  A S  EA      + + + +++D  +  +  
Sbjct: 872 QRILLIEDDAYQSKYLGDFLAGNNIFVLYAYSAAEALSLLGTDRV-DGIILDIRLADMNG 930

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEV 84
              +  +++ P  + + V     E 
Sbjct: 931 LDLLDTIKENPQWSAIPVVVNTAED 955


>gi|237734182|ref|ZP_04564663.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229382742|gb|EEO32833.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 218

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    + ++ +   +D G+    A     A E  E     + +++D  +    
Sbjct: 1   MNKILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYN-QFDLILLDIMLPEIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R +     + V +L  + D +  + G + GA  +++KPF    L   +  + 
Sbjct: 60  GYELMEYIRPLE----IPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVL 115

Query: 119 QMQK 122
           +   
Sbjct: 116 RRYH 119


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +     +      F      +  +A E  +K    +  ++D  + G+   
Sbjct: 7   RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDY-DLFILDIMLPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     T   V +L         + G   G + +L KPF    L   +R L + 
Sbjct: 66  ELCRRLRS---FTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRR 122

Query: 121 QKSKDE 126
              + E
Sbjct: 123 GSGQME 128


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++  +     G+ V+ A     A     + + P+ +++D  + G+  
Sbjct: 19  QRILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAI-MLARTIRPDLIILDLMLPGIDG 77

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    +   +  L      + ++A  + GA+ +++KPF    L   +  L +
Sbjct: 78  RDVCRLIRK---WSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLR 134

Query: 120 MQKSKDENQFLDA 132
                     L A
Sbjct: 135 RSAETTAGNVLTA 147


>gi|218886556|ref|YP_002435877.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757510|gb|ACL08409.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 491

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +R   R +  D GF V EA S  +      +E  P+ + +D  M G+   
Sbjct: 4   RILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARET-PDLVFLDIWMPGMDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      D+ V  +      E  +   R GA+ F+ KP + E +  A +   +   
Sbjct: 63  AVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGD 122

Query: 123 SKDENQFL 130
            + EN+ L
Sbjct: 123 LRRENEAL 130


>gi|218261685|ref|ZP_03476420.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM
            18315]
 gi|218223865|gb|EEC96515.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM
            18315]
          Length = 1304

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++++V+    +R   +   +     V+ A    +A E  +   LP+ +V D  M  +  F
Sbjct: 1055 TVMIVEDEPELRNYLKDELSGSFKEVYVAEDGRQALEMIQA-KLPDLVVSDVMMPYMNGF 1113

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L    D E  + G + GA+ ++ KPF+   L   +R   + 
Sbjct: 1114 ELCRRIKSDVGISHIPVILLTARTDNESTVQGYKLGADMYVPKPFDLGFLLAVLRNQLKS 1173

Query: 121  QKSKDENQFLDA 132
            ++    N++ +A
Sbjct: 1174 REIIR-NRYKEA 1184


>gi|328952445|ref|YP_004369779.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobacca acetoxidans DSM 11109]
 gi|328452769|gb|AEB08598.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobacca acetoxidans DSM 11109]
          Length = 463

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + +    +  D GF V  A     A +  E+E  P+ + +D ++ G+  
Sbjct: 3   RTILVVDDEPPILQTLSGILQDEGFEVLTAQDGETALKVVEEET-PDLVFLDIALPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                          V  +      E  +   R GA  F+ KP + + +   +R   +M 
Sbjct: 62  LEVLRHLKEQQPLTPVVMISAFGSVENAVKATRWGAYDFIEKPPHADKIIVTVRNALEMS 121

Query: 122 KSKDENQFL 130
           +  +EN  L
Sbjct: 122 RLTEENLQL 130


>gi|325281460|ref|YP_004254002.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324313269|gb|ADY33822.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 229

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    +  + +      GF          A E    +   +  ++D  M     F
Sbjct: 6   KILLAEDDTNLGMLLKEYLRAKGFETVLCEDGEVAYEAFLNQP-FDICILDVMMPKKDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121
                   + +++ + +L  +   E ++ G + GA+ ++ KPF+ E L   +  + +   
Sbjct: 65  TLAKEIRQINSEIPIIFLTAKNMKEDVLEGFKLGADDYMSKPFSMEELLLRIEAVLRRST 124

Query: 122 --KSKDENQ 128
             K +DE +
Sbjct: 125 GLKPEDEQE 133


>gi|315224461|ref|ZP_07866288.1| response regulator [Capnocytophaga ochracea F0287]
 gi|314945482|gb|EFS97504.1| response regulator [Capnocytophaga ochracea F0287]
          Length = 251

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +      GF V  A +  E  E  +KE   +  ++D  M     
Sbjct: 17  KHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETY-DMCILDVMMPYKDG 75

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F            + + +L      E +I G R+GA+ +L KPF+ E L   +R + Q +
Sbjct: 76  FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135

Query: 122 KSK 124
             +
Sbjct: 136 NIE 138


>gi|294777472|ref|ZP_06742923.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448540|gb|EFG17089.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1328

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +         D  + +  A    EA     KE     +V D  M  +    F
Sbjct: 1080 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKL-KENEVTLIVSDWMMPRMDGVEF 1137

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + +    L  + D    I G   GA++++ KPF+ + L   ++ L  ++ 
Sbjct: 1138 CKTIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197

Query: 123  SKDE 126
               +
Sbjct: 1198 LLRQ 1201


>gi|289641928|ref|ZP_06474083.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
            glomerata]
 gi|289508228|gb|EFD29172.1| GAF sensor hybrid histidine kinase [Frankia symbiont of Datisca
            glomerata]
          Length = 1215

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 2/130 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L++D           +   +G  V  A       +          +++D  M  +  
Sbjct: 1086 RRILVIDDDVRNVFAITSILELYGLTVIHAPDGRMGIDILLATDGIELVLVDVMMPEMDG 1145

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  +R+MP    + +  +  +           AGA+ ++ KP + + L   +R+   
Sbjct: 1146 YATMTAIREMPRFGALPIIAVTAKAMPGDRQKCLAAGADDYVTKPVDTDKLLACIRQRLT 1205

Query: 120  MQKSKDENQF 129
             QK  D N  
Sbjct: 1206 RQKPDDRNTR 1215


>gi|261251935|ref|ZP_05944509.1| chemotaxis regulator CheY [Vibrio orientalis CIP 102891]
 gi|260938808|gb|EEX94796.1| chemotaxis regulator CheY [Vibrio orientalis CIP 102891]
          Length = 119

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    +A          + ++ D +M  + 
Sbjct: 1   MTKILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKVTAGK-FDVVISDVNMPNMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R+ P    + +  L  E   +K   G  AGA  +L+KPFN +TL   ++ + 
Sbjct: 60  GFELVKALREKPQYKFIPILMLTTETSTDKKQQGKSAGATGWLVKPFNPDTLLKTLKRVI 119


>gi|257457919|ref|ZP_05623078.1| acetoacetate metabolism regulatory protein AtoC [Treponema
           vincentii ATCC 35580]
 gi|257444632|gb|EEV19716.1| acetoacetate metabolism regulatory protein AtoC [Treponema
           vincentii ATCC 35580]
          Length = 456

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +R+  +    D G+ V  A    +  +    E + + ++ D  M GV
Sbjct: 1   MKFKILVIDDEKNIREGLQMALEDEGYEVLTAEDGTDGLQKALSE-VVDLVITDLRMPGV 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R       V V  L      E  +   R GA  FL KP + + L   ++   Q
Sbjct: 60  GGQEILRRVTSETPGVPVIVLTGHGTVEAAVEAMRMGAYDFLTKPLDLDRLSLLVKRALQ 119

Query: 120 MQKSKDENQFL 130
            ++   +++ L
Sbjct: 120 NRELVLQHREL 130


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ + +              G+ +  A    +A +  + E  PN +++D  M G+    
Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSES-PNLILMDIQMPGIDGLE 1719

Query: 64   A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A   +RQ+P  T V +  L              AGAN ++ KP   + L   ++E+ 
Sbjct: 1720 AINRIRQIPTMTQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776


>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 224

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|254254582|ref|ZP_04947899.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124899227|gb|EAY71070.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 246

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   + +  P+ +V+D  + G     
Sbjct: 7   VLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLD-DGAPDLIVLDLMLPGEDGLA 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRDLRA-GKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSVLRRA 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +LLVD    + +V   +     + +  A +   A E  +KE  P+ +++D  + 
Sbjct: 1   MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKES-PDLVILDVMLP 59

Query: 58  --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                E    +R+    + V +  L  + +      G   GA+ +L+KPF+   L   ++
Sbjct: 60  LIDGYEVCRTIRE---TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVK 116

Query: 116 ELPQMQKSKDE 126
            L +    K++
Sbjct: 117 ALLRRSFDKEQ 127


>gi|330995652|ref|ZP_08319550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paraprevotella xylaniphila YIT 11841]
 gi|329574711|gb|EGG56272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paraprevotella xylaniphila YIT 11841]
          Length = 232

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +    + G+ V  A S  EA +        + L++D  M  +  F
Sbjct: 6   RILVVDDEEDLCDILKFNLENEGYEVETANSAEEALKM--DLAKFHLLLLDVMMGEISGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q+    D+ + +L         + G   GA+ ++ KPF+   ++  ++ + + 
Sbjct: 64  KMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVLRR 123

Query: 121 QKSKD 125
              + 
Sbjct: 124 TAPQQ 128


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 18  MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 77  GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 135


>gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K+ R      GF V  AT   E  +   K    + +++D  +  + 
Sbjct: 1   MKKILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKI-KNNSYDLVILDIMLPKLH 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +    D  V  +  + +    I G   GA+ ++ KPF+   L   +    + 
Sbjct: 60  GY-NVMKSIQDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKN 118

Query: 121 QKSKD 125
            +   
Sbjct: 119 YERLK 123


>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 14  RKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPL 71
           R+V R      G  V EA               P+ +V+D  + G+        VR    
Sbjct: 16  REVLRRYLTRDGHDVLEAADGPTGLRLVRSHH-PDLIVLDLMLPGMDGLQVCREVR---R 71

Query: 72  GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + V V  L         + G   GA+ +++KPF+   L   +  + Q  +
Sbjct: 72  TSTVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSR 122


>gi|94500275|ref|ZP_01306808.1| CheY-like receiver protein [Oceanobacter sp. RED65]
 gi|94427574|gb|EAT12551.1| CheY-like receiver protein [Oceanobacter sp. RED65]
          Length = 120

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++        G  V EA+   EA +  + + + + ++ D +M  + 
Sbjct: 1   MAKILAVDDSASMRQMVSFTLKGAGHDVLEASDGAEALKIAQGQAV-DLVLSDVNMPNMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E   ++RQ+       +  L  E   +K + G  AGA  +++KPFN + L   ++++ 
Sbjct: 60  GIELCKNLRQLSSYKFTPILMLTTESAGDKKMEGKSAGATGWIVKPFNPDQLLSTIKKVL 119


>gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + + +V +      G +VFEA    +  E  E+ + P+ +V+D  +  +  
Sbjct: 5   KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFER-INPDLIVLDLMLPDMTG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + VR+      V +  L  ++D + +I+G   GA+ ++ KPF+   L   +  + +
Sbjct: 64  EEICSIVRKRSR---VPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFR 120

Query: 120 MQKSK 124
               +
Sbjct: 121 RLNEE 125


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    + +       + GF V  A           K+L P+ +++D  M G+  F
Sbjct: 8   KILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLA-KQLHPHLVILDIMMPGMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     +V +  L  + + E  + G   GA+ ++ KPF+ E L   +    + 
Sbjct: 67  EVCRMLKKSE---NVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRN 123

Query: 121 Q 121
           Q
Sbjct: 124 Q 124


>gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
 gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
          Length = 1640

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+VD + +  +V   L     + V  + +   A +  +    P+ +++D  M  +   
Sbjct: 1344 TILIVDDTRVNLEVLALLLTQ-DYQVKVSGNGQRALDIAQCAPHPDLILLDVRMPVMDGY 1402

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++ PL  D+ V ++    D E    G + GA  ++ KP +       +     +
Sbjct: 1403 EVCQRLQENPLTCDIPVIFVTAAFDQESETYGLQLGAADYISKPISPGITLMRVHNQLLI 1462

Query: 121  QKSKDENQFLD 131
            ++ K E + + 
Sbjct: 1463 KRHKKELKRIA 1473



 Score =  116 bits (293), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 3/118 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            LL V+    +R++   +    G  V  AT+  EA    +K      +++D  M  +  F 
Sbjct: 1116 LLFVEDDLAIREMMPDILGYEGIRVDLATNGAEAIAMIDKNDY-AMVLMDCQMPVMDGFE 1174

Query: 64   --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R  P   D+ +  +   V  E        G    + KP + E     +    +
Sbjct: 1175 ASRIIRADPRFADLPIIAMTGNVMAEDRKRCLANGMTDHICKPIDWEQFFPTLTRWVK 1232


>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMYG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|288802394|ref|ZP_06407834.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Prevotella melaninogenica D18]
 gi|288335361|gb|EFC73796.1| putative two-component system sensor histidine kinase/response
            regulator hybrid [Prevotella melaninogenica D18]
          Length = 1356

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LL VD +  + +  R  F D  + V +  S   A  +  +    + ++ D  M G+   
Sbjct: 1079 TLLFVDDNEDLHQYIRMAFADQ-YHVVDVESGEAALNYLAENGECDIVISDVMMPGMQGD 1137

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    +++    + + V  L  +   + MI G   GA+ ++ KPF+   L   +  + + 
Sbjct: 1138 ELCRRIKENKETSWLPVILLTAKAGRDFMIEGLDLGADDYIAKPFDSAILASKIASMLKN 1197

Query: 121  Q 121
            +
Sbjct: 1198 R 1198


>gi|256838887|ref|ZP_05544397.1| two-component system sensor histidine kinase/response regulator
           [Parabacteroides sp. D13]
 gi|256739806|gb|EEU53130.1| two-component system sensor histidine kinase/response regulator
           [Parabacteroides sp. D13]
          Length = 622

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D S  +R   RH+F    + V EA +  E  E    E  P++++ D  M     
Sbjct: 368 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 425

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +P    V V  L  +V+ E +IAG   GA+ ++ KPF+ E LR  +  L +
Sbjct: 426 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 485

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 486 RR---DEMRR 492


>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
          Length = 242

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A+    A +     L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAAT-LRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130

Query: 122 KSKD------ENQFL 130
                     EN+ L
Sbjct: 131 DRAKVIAKNSENEKL 145


>gi|307153836|ref|YP_003889220.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306984064|gb|ADN15945.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 472

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++   +    G+ + +A +   A +      LP+ +++D  M  +   
Sbjct: 12  NILIVDDQANNLRILSEILAKKGYKIRKAINANSALKAVYS-TLPDLILLDIRMPEMDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++     +++ + +L    +    +   + G   ++ KPF    L   +     +
Sbjct: 71  QFCERIKADAQTSEIPIIFLSALDEVFSKVKAFQVGGVDYITKPFQEAELMARIENQLII 130

Query: 121 QKSKDENQ 128
           Q+ K + Q
Sbjct: 131 QRQKKQLQ 138


>gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 229

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A +  +A          + +++D  M  + 
Sbjct: 1   MK-ILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+   + + +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            +++  N
Sbjct: 119 SENQVTN 125


>gi|262282112|ref|ZP_06059881.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262262566|gb|EEY81263.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 229

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +V        G+ V    +  EA     +    N +++D  M  + 
Sbjct: 1   MMRILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTY-NVIILDIMMPIMT 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A       G    V  L    + +  + G  AGA+ +L KPF+ + L   +R + + 
Sbjct: 60  GLEALKEIRATGNTTHVIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMARR 119

Query: 121 QKSKDENQF 129
             +    Q 
Sbjct: 120 ADNYSPVQL 128


>gi|262276850|ref|ZP_06054643.1| protein PetR [alpha proteobacterium HIMB114]
 gi|262223953|gb|EEY74412.1| protein PetR [alpha proteobacterium HIMB114]
          Length = 226

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L++D    +R+  +       F V  A    +A+   +  L  + L++D  M G   
Sbjct: 6   KHILIIDDEEGIREPLKEYLESENFFVSTAKDAEDAKNKIQL-LEFDLLIVDIMMPGQSG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    +R+     D  + +L    +    I G   GA+ ++ KPF  + L   ++ + +
Sbjct: 65  LELTKEIRKD---KDTPIIFLTAMGESASRIHGLETGADDYVPKPFEPKELVLRIKNILK 121

Query: 120 MQKSKDENQFL 130
             KS  E   L
Sbjct: 122 RVKSLKEGTHL 132


>gi|255531222|ref|YP_003091594.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255344206|gb|ACU03532.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1370

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+ +  VR+     F    F + +A +  +  E    E++P+ ++ D  M  +    
Sbjct: 1119 LLIVEDNQDVRQFIAAHFEAE-FEIHQAENGLKGMELA-TEIIPDIIISDVMMPEMDGIT 1176

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
              + ++     + V V  L         I G   GA+ ++ KPFN   L   +  L    
Sbjct: 1177 LCSKIKSDTRTSHVPVILLTARTPLVYKIEGYETGADDYITKPFNLNMLEARVWNLLDSR 1236

Query: 120  ---MQKSKDE 126
                ++ + E
Sbjct: 1237 LKLRERYRKE 1246


>gi|227824850|ref|ZP_03989682.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905349|gb|EEH91267.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 226

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL +    +      +    G+ V    +  EA E   ++   + L+ D  M      
Sbjct: 2   NILLAEDEKAMSMAISAVLTHSGYTVDTVQNGAEAVEAAAQKPY-DCLIFDIMMPIKDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G +    +L  + + +  I G  AGA+ +L KPF    L   +R + + ++
Sbjct: 61  TALSEIRQSGNETPAIFLTAKSEVDDRIMGLDAGADDYLTKPFAMGELLARIRSMTRRRQ 120

Query: 123 SKDEN 127
              E+
Sbjct: 121 KDRED 125


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M+ +  V+    +    ++  +  G+ V  A +  +  E  ++E   + +++D ++    
Sbjct: 1   MNKICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQES-FDLVLLDVTLPDGS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+     ++ V +L    D   ++ G   GA+ ++ KPF    L   M  + 
Sbjct: 60  GYEICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVL 119

Query: 119 QMQKSKD 125
           +    K 
Sbjct: 120 RRAGKKQ 126


>gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 231

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +           G+ V +A +  +A +  E+E   + +++D  M  +   
Sbjct: 5   NILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEK-IHLVLMDVMMPELDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A V+      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  SATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRR 120


>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
           protein (C-terminal) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 224

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +  + +    + GF      +  E     EK  LP+ +++D  + G  
Sbjct: 1   MK-ILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKN-LPDGIILDLMLPGIG 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    ++       + +  +  +     ++ G   GA+ ++ KPFN   L   +R + 
Sbjct: 59  GMDLCKRIK--EKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVT 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|161899047|ref|YP_198017.2| response regulator PleD [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 458

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         + V  A    EA +   K+  P+ +++D  M  +  F
Sbjct: 4   RILVVDDVPSNVKLLEARLKAEYYTVIVAHDSEEAIDLVAKQ-QPDIILLDIMMPKINGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +++  PL T + +  +    D    + G  AGA+ FL KP +   L   ++ L ++
Sbjct: 63  KVCKNLKSTPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPIDETALSARIKSLTRL 122

Query: 121 QKSKDENQF 129
           +   DE + 
Sbjct: 123 KMVIDELRL 131



 Score = 76.4 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      +   ++      ++       EA      E   + ++ D         
Sbjct: 158 NILVVDEDIFQAEQIHNVLKQRFKLINILNDPMEAL-KVGIEDNYDLIISDMQFSETDGL 216

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R         +  L  + +   ++     GAN +L  P +   L   +    + 
Sbjct: 217 RLCSEFRSKVETRYTPILILSEDYNKNNLVKALDVGANDYLTVPLDESELIARVNLQVKR 276

Query: 121 QKSKDENQF 129
           ++ +D  + 
Sbjct: 277 KRYQDALRM 285


>gi|89519308|gb|ABD75785.1| putative signal transduction histidine kinase [uncultured bacterium]
          Length = 1323

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +  + G  V       +A E  ++    + +++D  M  +  
Sbjct: 1204 KTILMVDDDMRNVFALSSILEEKGMQVLIGEHGQDAMELLDQNPDIDLVLMDIMMPEMDG 1263

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +RQ P    + +  L  +           AGAN +L KP + + L   +R   
Sbjct: 1264 YEAMRQIRQQPKFKTLPIIALTAKAMKGDRQKCIDAGANDYLSKPVDTDKLLSLLRVWL 1322



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      K+   L  + GF    A       +    + +P+ +++D ++ G+    
Sbjct: 938  LLIIEDDPNFAKILFDLAREKGFKGLIAGDGAAGLQLAY-QYIPSAILLDIALPGMDGWM 996

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
             +  ++Q P    + V+++ +       +   + GA  +L KP   ETL  A
Sbjct: 997  VMEKLKQNPETRHIPVHFISVYAQS---LKAMKMGAVGYLTKPVTLETLDEA 1045



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              LL+V++     +    L +     +    +  +A     K    + +V+D  +     
Sbjct: 1058 KKLLIVENDETTSQGMLELLSGADVDILTTQTGEDAYTLL-KSDEFDGMVLDLGLADISG 1116

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118
             E +  +R     + + V     +   +         A S ++K   +++ L   +    
Sbjct: 1117 FELLERIRDDTTMSSLPVIVYTAKDLTKDEEMKLTKHAESIIIKGVKSQDRLLDEVTLFL 1176

Query: 119  QMQKS---KDENQFL 130
               ++   + + Q L
Sbjct: 1177 HRVEADLPEAQQQKL 1191


>gi|45657399|ref|YP_001485.1| chemotaxis response regulator [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294828107|ref|NP_712604.2| chemotaxis response regulator CheY [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45600638|gb|AAS70122.1| chemotaxis response regulator [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385954|gb|AAN49622.2| chemotaxis response regulator CheY [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 120

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD S + RK+     ++  F + EA    +  +   +    + +V D +M  + 
Sbjct: 1   MKRILIVDDSAVFRKILSLHLSNSSFDILEAVDGQDGLDKL-QNDKVDLIVSDMNMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F+  +++ P      +  L  E   E    G  AGA ++L KPF+ E L   + +L 
Sbjct: 60  GITFVKEIKKDPKNKFTPIIMLTTESQSEVKNEGIAAGARAWLTKPFSPEELVQTIHKLL 119


>gi|323136350|ref|ZP_08071432.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398424|gb|EFY00944.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 256

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    +R +      + G++V  A +  EA E   ++L  + +V+D  M G     
Sbjct: 23  ILVVDDDKRIRTLLSRYLANEGYLVSSAANAQEASERL-RDLAFDLIVLDVMMPGESGKQ 81

Query: 62  FIAHVRQM-PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F A +R+         +  L    +    + G  AG + +L KPF+   L   +  + + 
Sbjct: 82  FAARLRESGEPQASAPILMLTALAETADRVEGLEAGVDDYLAKPFDPRELSLRIASILRR 141

Query: 121 QKSKD 125
            +  +
Sbjct: 142 SRRHE 146


>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 250

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ D    +    +   +  GF V  A    EA +   K  + + L+ID  M  + 
Sbjct: 21  MELILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKV-DLLIIDIMMPVLD 79

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I    Q+   + + +  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 80  G-IRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 138

Query: 121 QK 122
            K
Sbjct: 139 YK 140


>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    + +    + +  G+ V  A +     +        + L++D  +     L
Sbjct: 2   RILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGY-DLLILDWMLPYQSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    V +L  +   +  + G   GA+ +L+KPF  + L   +R L + 
Sbjct: 61  DICQKLRT--EGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRR 118


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL+D    +  +        GF V  A                + +++D  M G+   
Sbjct: 4   RLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGL-LALAAGTFDAVLLDVMMPGMDG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  VR++   + + +  L    D    + G   GA+ ++ KPF+   L   +R + +   
Sbjct: 62  IEVVRRIRQKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRAT 121

Query: 123 SKDENQFLDA 132
                + + A
Sbjct: 122 PDAAGERIVA 131


>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
 gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V      +  + VF+  +  +A + C      +  ++D  +  +  F
Sbjct: 6   NILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALD-CINSTKIDLAILDIMLPDIDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++Q+       V  L  + ++   I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 65  -QILKQIRQKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 121


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      G+ +  A +  +A     +E  P+ +V+D  +  +   
Sbjct: 32  RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAA-REFKPDAVVLDIMLPDLDGL 90

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      D+ V +L  +   +  +AG  AG + ++ KPF+ E +   +R L + 
Sbjct: 91  QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 148


>gi|20091276|ref|NP_617351.1| response regulator receiver [Methanosarcina acetivorans C2A]
 gi|19916399|gb|AAM05831.1| response regulator receiver [Methanosarcina acetivorans C2A]
          Length = 292

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD      ++         + V  A    EA +   KE  P+ +++D  M      
Sbjct: 16  KVLIVDDKKENVELMEAYLAVEPYDVITAYGGKEAFQKV-KEEKPDIILLDVMMPEVNGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + V  L    + E  I G   GA+ FL KP NR  L+  ++ L ++
Sbjct: 75  EVCKILKGNPETQFIPVLMLTALSELEDRIRGIEVGADDFLTKPINRLELKTRVKSLLRV 134

Query: 121 QKSKDEN 127
           +   D  
Sbjct: 135 KCLHDRL 141


>gi|332886069|gb|EGK06313.1| hypothetical protein HMPREF9456_00187 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    + ++     ++ GF V  A S  EA +        + +++D  M G+  
Sbjct: 3   NKILIVDDEKDICEILEFNLSNEGFDVELAYSAEEALKKL--NPDFSLILLDVMMGGMSG 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +    +    G ++ + +L  +     M+ G   G + ++ KPF+ + +   ++ + +  
Sbjct: 61  YKMAEKLRKEGNNIPIVFLTAKDTENDMLTGFSVGGDDYISKPFSIKEVIARIKAVVKRL 120

Query: 122 KSKD 125
           + K 
Sbjct: 121 EVKK 124


>gi|325287243|ref|YP_004263033.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324322697|gb|ADY30162.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 236

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 4/125 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPNYLVIDESME 57
            ++LL +       + +       F V  A    EA +               V D  M 
Sbjct: 4   TTVLLAEDDFDFGSILKQYLEIHNFAVTWAKDGKEALDIFMLEANNNTPFGICVFDVMMP 63

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F    + +    +    +L  +   E  I G + GA+ +++KPF  + L   ++ +
Sbjct: 64  KMDGFTLAEKIINNSPETPFVFLTAKKMKEDKIKGLKLGADDYIVKPFEADILVLRLKNI 123

Query: 118 PQMQK 122
            +  +
Sbjct: 124 LKRTQ 128


>gi|262405712|ref|ZP_06082262.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643395|ref|ZP_06721214.1| sensor histidine kinase/response regulator family protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810622|ref|ZP_06769272.1| sensor histidine kinase/response regulator family protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262356587|gb|EEZ05677.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641273|gb|EFF59472.1| sensor histidine kinase/response regulator family protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442164|gb|EFG10981.1| sensor histidine kinase/response regulator family protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 601

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 355 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 411

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 412 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 471

Query: 122 KSKD 125
               
Sbjct: 472 MLLK 475


>gi|257094336|ref|YP_003167977.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046860|gb|ACV36048.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 368

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD +     V   L +     V    S   A +       P+ +++D  M  + 
Sbjct: 1   MATILIVDDTPENLAVLNGLLSPL-HRVRAVNSGQRALQAAASRPRPDLILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R      D+ V ++      +    G   GA  ++ KP     +   +R   
Sbjct: 60  GYEVIRRLRADVATADIPVIFVTALDSSDDEEHGLSLGAVDYITKPIRPAIVIARVRTHL 119

Query: 119 QMQKSKDENQ 128
           +++ ++D  +
Sbjct: 120 ELKAARDLLR 129


>gi|237715817|ref|ZP_04546298.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229443464|gb|EEO49255.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1360

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              LLLV+ +   R   +    DF + + EA    E      +E  PN ++ D  M     
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGGEGERKAIEEN-PNLIISDIMMPKVDG 1165

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +E    ++     + + V  L      +  I     GA+S++ KPFN + L   + +L +
Sbjct: 1166 IELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIE 1225

Query: 120  MQKSKDEN 127
             Q+ + + 
Sbjct: 1226 QQEKRKQE 1233


>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLVD    +  + R   ++ GF V          E        + +++D  M    
Sbjct: 1   MIRILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDY-DLILLDVMMPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +R     +++ V  L  + D    I G   GA+ ++ KP     L   +R + 
Sbjct: 60  GIDVLRRLRNH---SNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|242281256|ref|YP_002993385.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
 gi|242124150|gb|ACS81846.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
          Length = 352

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 4/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD       +   +    G  V  A +   A E  ++    + ++ D  M  +  
Sbjct: 5   RKILVVDDEPHNIMLLEGILTKLGHEVVGAENAVVALEKLDRTY--DLVLSDVMMPVMNG 62

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+     D+ V  +         +     GAN F+ KP +   LR     + +
Sbjct: 63  FEFVEKIRENTETQDIPVIMVTTLSQKGDRLKAVEIGANDFITKPIDIVELRVRTESMLR 122

Query: 120 MQKSKDENQFLDA 132
            +  +DE +  ++
Sbjct: 123 QKAQQDEIKSFES 135


>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
 gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  +    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|170743275|ref|YP_001771930.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197549|gb|ACA19496.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1857

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           +    G  V  AT+  EA    E       +++D  M  +  
Sbjct: 1737 RTVLLVDDDARNIFALSSVLERRGMRVLTATTGREAISIIEARADIAIVLMDIMMPEMDG 1796

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R  P    + +  L  +           AGA+ +L KP N E L  A+R    
Sbjct: 1797 YETMQVIRANPAFRRLPIVALTAKAMKGDREKCLEAGASDYLAKPVNTEQLLSALRLWLH 1856

Query: 120  M 120
             
Sbjct: 1857 R 1857



 Score = 99.9 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A+   +A     +   P  + +D  +  +L   
Sbjct: 1471 LLIVEDDPHYARVLAQLARDGGFKVLIASRGADALALARRH-RPTAISLDVFLPDMLGWT 1529

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             ++H++Q P    + V  +      E    G   GA +FL KP   E L  A+R +   +
Sbjct: 1530 VLSHLKQDPATRHIPVQIVT---LDEDRRHGLARGAYAFLSKPTTSEDLGAALRRI--KR 1584

Query: 122  KSKDENQFL 130
             ++   + L
Sbjct: 1585 FAEPRQRRL 1593



 Score = 85.2 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V+ +   R     L       +  A +  EA          + +V+D  +  +  
Sbjct: 1591 RRLLIVEDNPAERMSVATLLGHEDIAIVTAETGEEALAALRAG-AFDCVVLDLKLPDMSG 1649

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPF-NRETLRF 112
            F  +  +R+     D+ V          + +  +      A S ++K   + E L  
Sbjct: 1650 FEVLERLREDHALADLPVVVFTGRALSPEEDARLHAL---ARSVVVKGVESPERLLD 1703


>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
 gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
          Length = 229

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
 gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
          Length = 230

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+    +R++  +     GF V  A +  EA ++C  +   + +++D  +     
Sbjct: 3   KHILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQT-FDLVILDIMIPKLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  +R+      + +  +  +        G   GA+ ++ KPF+       ++ + +
Sbjct: 62  LEVLKVIREQAA---LPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|120612175|ref|YP_971853.1| two component LuxR family transcriptional regulator [Acidovorax
           citrulli AAC00-1]
 gi|120590639|gb|ABM34079.1| two component transcriptional regulator, LuxR family [Acidovorax
           citrulli AAC00-1]
          Length = 353

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  AT    A      + +P+ +++D  M G+  F 
Sbjct: 30  VLIVDDVPDNLAVLHDALDESGYTVLVATGGETALARA-AQAMPDVVLLDAMMPGMDGFE 88

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + + ++    + E + A   AG   ++ KP     +   M    Q  
Sbjct: 89  VARRLKARPATAHIPIIFMTGLTETEHLEAALAAGGVDYVTKPIKPREVLARMNVHLQGA 148

Query: 122 KSKDENQF 129
           +   ++  
Sbjct: 149 RRARQDMR 156


>gi|119486867|ref|ZP_01620842.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119456160|gb|EAW37293.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 366

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +R     L     F V  A +     +    E LP+ ++ D  M    
Sbjct: 1   MSKILVIEDEFAIRDNIIELLEIEDFEVLGAENGRIGFQKA-SEYLPDLILCDVMMPDLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               ++ +R  P    +   +L  + +   +  G   GA+ +L KP   E L  A++   
Sbjct: 60  GYGVLSALRSNPTTATIPFIFLTAKAEHTDIRQGMGLGADDYLTKPCTAEELLEAIKTRL 119

Query: 119 QMQKSKDENQFLD 131
           + Q+  D+   L 
Sbjct: 120 KKQEIFDKQSQLK 132


>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
 gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|91226928|ref|ZP_01261525.1| putative two-component response regulator [Vibrio alginolyticus
           12G01]
 gi|91188891|gb|EAS75176.1| putative two-component response regulator [Vibrio alginolyticus
           12G01]
          Length = 225

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTMCNKLRDEGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|56966618|pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-Digmp
 gi|56966619|pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-Digmp
 gi|158430933|pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
 gi|158430934|pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
           And Gtp-Alpha-S
          Length = 459

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V  A     A     ++ LP+ +++D  M G+  F
Sbjct: 3   RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-LPDIILLDVMMPGMDGF 61

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         I G  +GA+ FL KP +   L   +R L + 
Sbjct: 62  TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 122 KLVIDELRQREA 133



 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +    +                +   +A          + ++++ + +     
Sbjct: 154 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA--KISAGGPVDLVIVNAAAKNFDGL 210

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +R       + V  ++   D  +M+     G N  L +P + + L   ++   Q 
Sbjct: 211 RFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 270

Query: 121 QKSKD 125
           ++  D
Sbjct: 271 KRYTD 275


>gi|323184776|gb|EFZ70147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1357]
          Length = 209

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 20  LFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFV 77
           +    GF   EA     A      E  P+ +++D  + G     FI H+++  +  D+ V
Sbjct: 1   MLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 59

Query: 78  YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131
             L    + E  + G   GA+ ++ KPF+ + L   ++ + +        + ++
Sbjct: 60  VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIE 113


>gi|311893921|dbj|BAJ26329.1| putative two-component hybrid sensor and regulator [Kitasatospora
            setae KM-6054]
          Length = 1412

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD           +    G  V +A +   A E        + +++D  M  +    
Sbjct: 1293 VLVVDDDDRNLYAITGILELHGMRVLQAENGRAALETLAANPGIDVILMDVMMPEMDGYT 1352

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              A +R MP    + +  +  +           +GA+ ++ KP +   L   +    
Sbjct: 1353 ATAAIRAMPQHAALPIIAVTAKAMLGDREKSLGSGASDYVTKPVDAGELISRIEAQL 1409


>gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 236

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R +        G+ V EA    EA E    +   + +V+D  M      
Sbjct: 9   KVLIVDDEQDIRTLLNIYLKRLGYDVVEAADGVEAVETVRADKDIDLIVMDIMMPKLSGT 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    + + V +L  +            G + FL KPF +      +  L + 
Sbjct: 69  EACQQIRE---FSSIPVLFLTAKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALIRR 125

Query: 121 QK 122
            K
Sbjct: 126 YK 127


>gi|294810056|ref|ZP_06768728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294442749|gb|EFG11544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|295085462|emb|CBK66985.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1307

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLV+ +  +  + R   + + F V  A +  EA E   ++ + + +V D  M  +   
Sbjct: 1061 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSV-DVIVSDVMMPEMDGL 1118

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                HV+     + + V  L  +   E  + G  +GA+ +L KPF+ + L   +  L ++
Sbjct: 1119 ELCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLLKL 1178

Query: 121  Q 121
            +
Sbjct: 1179 R 1179


>gi|302554553|ref|ZP_07306895.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
 gi|302472171|gb|EFL35264.1| two-component system sensor kinase [Streptomyces viridochromogenes
            DSM 40736]
          Length = 1824

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1703 QKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1762

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1763 YATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMDQWMR 1822


>gi|322420858|ref|YP_004200081.1| Fis family two component sigma54 specific transcriptional regulator
           [Geobacter sp. M18]
 gi|320127245|gb|ADW14805.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. M18]
          Length = 457

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R     +  D G+    A    EA   C KE LP  +++D  M  +   
Sbjct: 4   TILIVDDEEGIRSSLAGILEDEGYRTVCAADGTEALALCNKE-LPGLVLLDIWMPKMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  +      E  +   + GA  F+ KP + E +   +     M +
Sbjct: 63  ETLKRLKEQHPGLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALSMNR 122

Query: 123 SKDENQFL 130
            K+EN  L
Sbjct: 123 LKEENATL 130


>gi|253568433|ref|ZP_04845844.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251842506|gb|EES70586.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 231

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +  + +    + GF +  A+   E       EL P+ LV D  M  +  F
Sbjct: 7   TVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFF-ELRPDVLVADVMMPKMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 66  EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALM 121


>gi|288941792|ref|YP_003444032.1| Fis family two component sigma54 specific transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288897164|gb|ADC63000.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Allochromatium vinosum DSM 180]
          Length = 455

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 4/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + + +  D G+ V  A +   A     ++  P+ +++D  M  +  
Sbjct: 4   THILVVDDEPDIRGLVKEILEDEGYAVAVAENGEAA-RHALRDRRPDLILLDIWMPDIDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +    +        V  +      E  +   R GA  FL KP +   L   +    +
Sbjct: 63  ISLLKEWAEDDGLP-CPVIMMSGHGTVETAVEATRLGAYDFLEKPLSMAKLLLTLERALE 121

Query: 120 MQKSKDEN 127
             K + EN
Sbjct: 122 ADKLQQEN 129


>gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 234

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R          G  V +A +  EA E   ++ L + +++D  MEG   
Sbjct: 3   KTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHL-DLVILDVMMEGYNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E  + +R       + +  L  + D      G + GA+ ++ KPF    L        +
Sbjct: 62  FEVCSAIR--DKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLR 119

Query: 120 MQKSKD 125
            +  ++
Sbjct: 120 NRSPQE 125


>gi|237717363|ref|ZP_04547844.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262406129|ref|ZP_06082679.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294644026|ref|ZP_06721803.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|229443346|gb|EEO49137.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262357004|gb|EEZ06094.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292640550|gb|EFF58791.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1326

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLV+ +  +  + R   + + F V  A +  EA E   ++ + + +V D  M  +   
Sbjct: 1080 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSV-DVIVSDVMMPEMDGL 1137

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                HV+     + + V  L  +   E  + G  +GA+ +L KPF+ + L   +  L ++
Sbjct: 1138 ELCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLLKL 1197

Query: 121  Q 121
            +
Sbjct: 1198 R 1198


>gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A     +E   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDAL-MLLEEKDIHLIIMDIMMPRMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRR 120


>gi|77164200|ref|YP_342725.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|76882514|gb|ABA57195.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
          Length = 231

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LL D    +  + +      GF V  A     A          +  V+D  M    
Sbjct: 1   MNRILLADDDIELCGMLKQYLEVEGFQVGMAHGGESALNQARTGGY-DLAVLDVMMPQLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             + +  +R+  L   V V  L    +    I G   GA+ +L KP N   L   +R + 
Sbjct: 60  GFDVLRELRKDSL---VPVLMLTARGEDVDSIIGLELGADDYLPKPCNPRVLVARIRAIL 116

Query: 119 QMQKSKDE 126
           +  +S+ +
Sbjct: 117 RRLQSQTQ 124


>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 233

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R + +    + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|329934222|ref|ZP_08284301.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305818|gb|EGG49673.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 255

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LLV+   ++R+        +G+ V  A       E   +E   + L++D  + G   +
Sbjct: 8   TILLVEDDTVIRRSVTMALERYGYRVTAAADGLTGLELF-REGRHDLLLLDVMLPGLDGI 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+  +     V  +    D   +++G  AGA+ +++KP +   L   +R L + 
Sbjct: 67  GLCRRIRETSMD---PVLMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 123


>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 233

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF V          +    +  P+  ++D  + G+  
Sbjct: 4   THVLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQ-RPDIALLDVMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 63  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|317407497|gb|EFV87452.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 195

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+++    +     H     G++V  A            E   + +V+D  +      
Sbjct: 67  RVLVIEDDPDILANITHHLTRRGYIVDCAEDGLRGYAMA-AEGGFDLIVLDLMLPRLDGY 125

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    +  +      +  +AG  AGA+ +L+KPF    L   ++ L   
Sbjct: 126 DLCRQLRA-EAGCGTPIIIVTARDTLDNRLAGFDAGADDYLVKPFALAELAARVKALLHR 184

Query: 121 QKSKDENQFL 130
                  + L
Sbjct: 185 ASGAGAARVL 194


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D    +R    +     GF+V  A    +A E   +   P+ L++D  M   G 
Sbjct: 3   KRILIADDEASIRNALAYALKREGFLVETAVDGEDALEKV-RLFHPDVLILDVMMPKLGG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +        V +  L  + D    + G   GA+ F+ KPF+   L   ++ L +
Sbjct: 62  YEVCRRL---ESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVR 118

Query: 120 MQKSK 124
             + +
Sbjct: 119 RLERE 123


>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ VF   +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 226

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF          A     +   P+ +++D  + G 
Sbjct: 1   MKSRVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAF-RSAQPDIVLLDVMLPGK 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R++   + V +  L  + D   ++ G  +GA+ ++ KPF  + L   MR   +
Sbjct: 60  DG-TQVAREIRAESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLR 118

Query: 120 MQKSKDENQFL 130
            Q+     + L
Sbjct: 119 RQEDPGPERLL 129


>gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
            17393]
 gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
            17393]
          Length = 1391

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R L     + +FEA    EA E  +K    + +V D  M  +   
Sbjct: 1141 TILIVEDNKDMRSYIRTLLVG-DYRLFEAGDGQEALEIVQKHT-IDLIVSDLMMPVMDGM 1198

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++    + +    L       +       G + +L KPF+ E LR  +R +  +
Sbjct: 1199 ELSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNILNL 1258

Query: 121  QKSKDEN 127
            ++   + 
Sbjct: 1259 RRKYKKM 1265


>gi|150010077|ref|YP_001304820.1| two-component system sensor histidine kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938501|gb|ABR45198.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 633

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D S  +R   RH+F    + V EA +  E  E    E  P++++ D  M     
Sbjct: 379 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 436

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +P    V V  L  +V+ E +IAG   GA+ ++ KPF+ E LR  +  L +
Sbjct: 437 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 496

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 497 RR---DEMRR 503


>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
 gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF V++  +  EA E C +    +  ++D  +  +  F
Sbjct: 4   NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALE-CIESKNLDMAILDIMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +++    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  HICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119


>gi|114762219|ref|ZP_01441687.1| response regulator [Pelagibaca bermudensis HTCC2601]
 gi|114545243|gb|EAU48246.1| response regulator [Roseovarius sp. HTCC2601]
          Length = 415

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD S +  K+   +   +GF V++A S  EA   CE E+  + ++ D  M G+  
Sbjct: 19  QRILLVDDSAVQLKILAAMMRHWGFEVWQAESGAEALALCE-EIAFDAVLSDWMMPGMDG 77

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
                  RQ+P  +  +   L  + +   ++ G  AGA+ FL KP + + LR  +     
Sbjct: 78  LELCRQFRQLPRDSYGYFILLTSKNERGAIVRGLDAGADDFLTKPVSSDELRARINAGAR 137

Query: 117 LPQMQKSKDE 126
           L   Q+   E
Sbjct: 138 LLSTQRQLAE 147


>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|265751907|ref|ZP_06087700.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263236699|gb|EEZ22169.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 379

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L  +  F V  A +  EA         P+ +++D  M  +  F
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 74  EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133

Query: 121 QKSKD 125
             +K 
Sbjct: 134 VAAKR 138


>gi|260777826|ref|ZP_05886719.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605839|gb|EEX32124.1| pole remodelling regulatory diguanylate cyclase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 376

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD +   R +   L       V  AT   +A   C K+  P+ +++D  M  +  
Sbjct: 6   TSVLVVDDNAENRVLLSGLLKPH-HRVLVATGGVQAINIC-KQKKPDIVLLDVMMPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +   P   D+ V +L  +   E    G  AGA  ++LKP +   L   +    +
Sbjct: 64  YEVCERLTSDPETHDIPVIFLTAKSQIEDEQRGFAAGAVDYILKPISPPILISRINTHLR 123

Query: 120 MQKS----KDENQFLDA 132
           ++ +     ++N+ L+ 
Sbjct: 124 LRGAMDALAEQNEELEE 140


>gi|197118407|ref|YP_002138834.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087767|gb|ACH39038.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 452

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S    K+   L    G+ V  A +  +A E   +E  P+ ++ D  M  +  F 
Sbjct: 14  ILIVDDSPTQAKLLEQLLAGEGYRVAIARNGSDALEQI-RERQPDLVISDILMPEMDGFE 72

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR M    D  +  L    D   ++    AGAN F+ KP++ + L   +R++ Q +
Sbjct: 73  LCRRVRGMESIKDTPIVLLTHLNDPSDVLHSLEAGANYFVSKPYSDKLLLNRIRDVLQGE 132

Query: 122 KS 123
           ++
Sbjct: 133 RA 134


>gi|119469501|ref|ZP_01612405.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonadales
           bacterium TW-7]
 gi|119447036|gb|EAW28306.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Alteromonadales
           bacterium TW-7]
          Length = 330

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      KV R +  +  + +  A S   A    EKE LP  +++D  M  +  F
Sbjct: 9   RVLIVDDEPANLKVMREILGNQ-YRLSFAKSGEAALTLLEKE-LPKLILLDIMMPDMNGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               HV++ P    + + ++    D      G   GA  ++ KP +   +R  ++    +
Sbjct: 67  EVCEHVKRNPKTAHIPIIFVTALGDESDEYKGFELGAVDYITKPISPAIVRARVKTHLSL 126

Query: 121 QKSKDENQ 128
            +++   Q
Sbjct: 127 VQAEQLKQ 134


>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 252

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 26  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 85  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 141

Query: 121 QK 122
            +
Sbjct: 142 PR 143


>gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 234

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|255532721|ref|YP_003093093.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345705|gb|ACU05031.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1340

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             LLLVD +  +    +  F D  + +  A     A E        + ++ D  M  +   
Sbjct: 1088 KLLLVDDNKEILAYLQDFF-DQTYQISVAFDGKMALEML-AHQQFDMIISDVMMPELDGL 1145

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   V+Q    + + +  L  + +  ++I G   GA+ ++ KPF+   L   +  L + 
Sbjct: 1146 HFCKRVKQNINTSHIPLILLTAKTEDSQLIKGLEMGADDYVTKPFSTSLLAAKITNLLRS 1205

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1206 RKRLKE 1211


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 224

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    + ++ R       FMV    +  E  +        + +++D  + G+  F
Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQAL-HGDYDLIILDIMLPGMNGF 546

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +    ++ + ++  + +    I G   GA+ ++ KPF+   L   ++     
Sbjct: 547 EICKQIRAV---NNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSR 603

Query: 121 QKSKDENQ 128
            +    N+
Sbjct: 604 YERLASNK 611


>gi|116328162|ref|YP_797882.1| response regulator receiver domain-containing protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116120906|gb|ABJ78949.1| Response regulator receiver domain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 120

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD S + RK+     ++  F + EA    +  +  + + + + +V D +M  + 
Sbjct: 1   MKRILIVDDSAVFRKILNLHLSNSDFDILEAVDGQDGLDKLQSDKV-DLIVSDMNMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F+  +++ P      +  L  E   E    G  AGA ++L KPF+ E L   + +L 
Sbjct: 60  GITFVKEIKKDPKNKFTPIIMLTTESQTEVKNEGLAAGARAWLTKPFSPEELVQTIHKLL 119


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++ R      G+ V +  S  EA +   ++  P+ +++D  +  +   
Sbjct: 6   TILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQ-RPDLVILDIMLPDLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +       + +  L      E +I G   GA+ +++KPFN + L   +R L + 
Sbjct: 65  TVCQKVRE-FASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRR 121


>gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL D    +R++ RH     G++V EA    EA     K+   +  V+D  M    
Sbjct: 1   MIHILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQH-IHLAVVDIMMPHKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      D  +  L  +   E    G  AG + ++ KPF  + L F ++ L 
Sbjct: 60  GYEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALL 116

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 117 RRYEVVNE 124


>gi|238797763|ref|ZP_04641257.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
 gi|238718404|gb|EEQ10226.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
          Length = 238

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R+  R      G+ VFE+ ++            P+ +++D  +     
Sbjct: 15  TNILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGT-RKPDLIILDLGLPDGDG 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++ +   + + +  L      E  +A   AGA+ +L KPF    L   +R   +  
Sbjct: 74  LT-YIQDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH 132


>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  +   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKIDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
 gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 1   MDSL-LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  + L+V+    ++ +      D G+    A    EA E   K    + +++D  M  +
Sbjct: 2   MKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELF-KSKRVDLILLDIMMPKL 60

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    + V +  L  +      + G   GA+ ++ KPF+ + L   +  L
Sbjct: 61  DGLSVCRTIRKQD--SRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINAL 118

Query: 118 PQMQKSKDEN 127
            +   +  + 
Sbjct: 119 LKRADAGAQE 128


>gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
 gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
          Length = 232

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    V+ +         +    A++   A         P+ +++D  +  
Sbjct: 1   MNKPLILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHN-PDVILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +R++   +   +  L    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTF 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    + ++ +      G+ V  A    EA E  +K    + ++ D  M  +  
Sbjct: 3   KRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQK-YSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           +        L  +    ++  +      I     GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDLIGEVQYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRI 121

Query: 121 QKSKDENQFLD 131
            +S    + L 
Sbjct: 122 HRSMGTEETLQ 132


>gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
 gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     E+     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++    +V V  L  + D E  ++G R GA+ +L KPF    L   +  L +
Sbjct: 61  NGF-QVLQEIRKKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|285017655|ref|YP_003375366.1| two-component system regulatory protein, ompr family [Xanthomonas
           albilineans GPE PC73]
 gi|283472873|emb|CBA15378.1| probable two-component system regulatory protein, ompr family
           [Xanthomonas albilineans]
          Length = 236

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M S +L+VD    +R++     ++ G+ V  A +V +       E  P+ +V+D  M G 
Sbjct: 1   MKSFILVVDDDPDLRRLISEFLSEHGYQVESAETVAQ-MRQLMAERQPDLIVLDVMMPGE 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +         V  L         I G   GA+ +L KP N   L   +R L +
Sbjct: 60  DGLSAARQLASERGAPAVIMLSALGSDTDRIIGLEVGADDYLAKPCNPRELLARVRALLR 119

Query: 120 MQKS 123
             ++
Sbjct: 120 RSQA 123


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +++V+    + +  +      GF      +   A E   +E   + +++D  +  +    
Sbjct: 31  IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQY-DLVLLDIMLPDMDGLE 89

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR++   +DV +  L  + D E  + G   GA+ ++ KPF  + L   +R   ++ 
Sbjct: 90  VCRRVREI---SDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVH 146

Query: 122 KSKDENQF 129
           K+ +    
Sbjct: 147 KANEAGNR 154


>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 229

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +       + V  A+          K       ++D  + G  
Sbjct: 1   MSRILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYV-LCILDVMLPGKD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     ++ +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKAIRKE---KNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|239834773|ref|ZP_04683101.1| Probable transcriptional regulator ycf27 [Ochrobactrum intermedium
           LMG 3301]
 gi|239822836|gb|EEQ94405.1| Probable transcriptional regulator ycf27 [Ochrobactrum intermedium
           LMG 3301]
          Length = 257

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + ++        G+    A     A +     L P+ +++D  +  +  F 
Sbjct: 33  VLIVEDEPEIAQILDAYLVREGYRTVRAADGETALQH-HALLSPDIVLLDVRIPKLDGFA 91

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK- 122
              R      +  V  +    +    ++G R GA+ +++KPFN + +   ++ + +  K 
Sbjct: 92  VLARLR-QTKNTPVIMVTALAEDIDRLSGLRLGADDYVVKPFNPQEVVARVKAVLRRTKG 150

Query: 123 -SKDENQFLDAI 133
             ++  +   AI
Sbjct: 151 DQQETLRRFGAI 162


>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis EAS054]
 gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
 gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
          Length = 253

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 24  RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + KV +      G+ V+ +       E  +K+  P+ +V+D  +  +   
Sbjct: 9   TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQN-PDIVVLDLMLPNMSG- 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R++    +  +  L  +   ++ I G   GA+ +++KP +   +   ++ + + 
Sbjct: 67  EEIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRR 124


>gi|187926366|ref|YP_001892711.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665853|ref|YP_002984212.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728120|gb|ACD29284.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867880|gb|ACS65540.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 243

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLTQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         DV V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122


>gi|83643744|ref|YP_432179.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631787|gb|ABC27754.1| Response regulator containing a CheY-like receiver domain and a
           GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 469

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++  ++F +    V  A +  EA E   ++ LP+ +++D  + G+  F
Sbjct: 9   RILVVDDQATNIELLHNIFKEV-HEVEFAMTGEEALEMAIRD-LPDIILLDIQLPGMDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V +L  + D + M+ G + GA  +++KPFN   L   +     +
Sbjct: 67  EVCRRLKSNANTRHIPVIFLTAKNDVDDMVNGYKQGAVDYVIKPFNWFELIAKVNTQLVL 126

Query: 121 QKSKDENQ 128
           ++ K E +
Sbjct: 127 REMKSELR 134



 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S    +    +  D  + +F A +  +A +   +E  P+ +++D  +     
Sbjct: 167 QRVLIVDDSVSNIETLASMLGDE-YELFFAVNGEQA-KQIAREAHPHLIMLDVVLPDTDG 224

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++ P   D+ + ++      E    G  AGA  +++KP++   ++   R L +
Sbjct: 225 YQVCKQLKREPETRDIPIVFVTSRDSAEDETRGLEAGAIDYIIKPYSHSIVKARTRNLLE 284

Query: 120 MQKSKDENQFL 130
           + +++D  + L
Sbjct: 285 LVRNRDLLKKL 295


>gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
          Length = 309

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    ++ + P+ +++D  M G+  F 
Sbjct: 13  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V ++    + E ++    AG   +L KP N + LR  +R      
Sbjct: 72  TCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 131

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 132 RSAQSARVALDA 143


>gi|88706905|ref|ZP_01104604.1| Adenylyl cyclase class-3/4/guanylyl cyclase [Congregibacter
           litoralis KT71]
 gi|88698827|gb|EAQ95947.1| Adenylyl cyclase class-3/4/guanylyl cyclase [Congregibacter
           litoralis KT71]
          Length = 495

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L VD     R +        G  V  A S  EA E        + +++D  M G+    
Sbjct: 143 ILAVDDREENRALLARYLTRSGHFVVTAPSGEEALEML-ANADVDVVLLDRMMPGMDGRE 201

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  P      V  +  E D + +I   +AGA+ +L KPFN   L+  ++   + +
Sbjct: 202 VLRRIKAEPRLRATPVIMISGEQDMQGIIECIKAGADDYLFKPFNPVLLQARIKAGIERK 261

Query: 122 KSKDENQF 129
           +  D  Q 
Sbjct: 262 QWHDREQL 269


>gi|75760000|ref|ZP_00740067.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492519|gb|EAO55668.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 117

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++FG+   EA +  EA +  E +   +++V+D  M  +   
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R+    +DV + +L  + +    + G R G + +++KPF+   L   M  +
Sbjct: 64  SVCKEIRK---TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAV 117


>gi|325473731|gb|EGC76920.1| sigma-54 dependent transcriptional regulator/response regulator
           [Treponema denticola F0402]
          Length = 473

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L++D    +R+       D G+ V  A +     +   K+ + + ++ D  M  +
Sbjct: 1   MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEV-DLVITDLKMPEI 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                    +     V V  L      E  +   R GA  FL KP + E L   ++   Q
Sbjct: 60  SGEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQ 119

Query: 120 MQKSKDENQFL 130
            +    +N+ L
Sbjct: 120 NRALVLQNRAL 130


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+ D    +R    +     GF+V  A    +A E   +   P+ L++D  M   G 
Sbjct: 3   KKILIADDEASIRNALAYALKREGFLVETAVDGEDALEKV-RLFHPDVLILDVMMPKLGG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +        + +  L  + D    + G   GA+ F+ KPF+   L   ++ L +
Sbjct: 62  YEVCRRL---ESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVR 118

Query: 120 MQKSK 124
             + +
Sbjct: 119 RLERE 123


>gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 232

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             FI+ V+ +         +   +   +  I G   GA+ F++KPF+   L   +  + +
Sbjct: 62  YDFISEVQYIAPAQ--PFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILR 119

Query: 120 MQKSKDENQFLD 131
                 E + ++
Sbjct: 120 RLSRGRETEQIE 131


>gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 318

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +D G +V  AT    A E  +  + P+ +++D  M G+  F 
Sbjct: 11  VLIVDDMPDNLAMLSDALDDSGHIVLVATDGLSALERLD-HITPDLILLDAMMPGIDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q+     V V ++    + E ++ G   G   ++ KP   + +   +    +  
Sbjct: 70  TCRRIKQVRRVAHVPVVFMTGLSETEHVVRGFEVGGIDYVTKPIRPQEVVARIGAHIRTA 129

Query: 122 KSKDENQ 128
           +   + +
Sbjct: 130 RMMVQAR 136


>gi|288925418|ref|ZP_06419352.1| sensor histidine kinase/response regulator [Prevotella buccae D17]
 gi|288337889|gb|EFC76241.1| sensor histidine kinase/response regulator [Prevotella buccae D17]
          Length = 880

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +++ +    + +  +       F V    +  EA     KE +P+ +V D  M  +  
Sbjct: 625 QHIIVAEDDDEIAQYLKAELEK-DFRVTLCPNGQEALNTVFKE-MPSLVVSDIMMPVMDG 682

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A ++       + V  L  +   E  + G   GA+++++KPFN + L   +  L  
Sbjct: 683 NTLCARLKSNVNTNHIPVILLTAKSRDEDRLEGLETGADAYIVKPFNMDILHRTITNLLH 742

Query: 120 MQKSKD 125
            ++   
Sbjct: 743 QRELLR 748


>gi|254510175|ref|ZP_05122242.1| response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221533886|gb|EEE36874.1| response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 424

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++       +GF V EA +   A + C  +  P  ++ D  M G+  
Sbjct: 20  RKVLVVDDSRLQRRILVASLKKWGFEVLEADNGEAALDLCLSDP-PQLVLSDWVMPGMSG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           LEF    R +      +   L  + + +++  G  AGA+ FL+KP   + LR  +     
Sbjct: 79  LEFCHAFRNLATEQYSYFILLTSKSEKQEVAKGLDAGADDFLIKPLEADELRARISAGAR 138

Query: 117 LPQMQKSKDENQFL 130
           +  MQ+   E   L
Sbjct: 139 ILDMQRELSEKNRL 152


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +        +D  ++V  A     A E  +     + +++D  +  + 
Sbjct: 1   MK-ILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDV-YEYDLILLDIMLPKID 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    +  L         +AG  AGA+ +L+KPF  + L   +R L + 
Sbjct: 59  GISLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRR 118


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  + +      G+ +  A +  +A     +E  P+ +V+D  +  +   
Sbjct: 44  RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAA-REFKPDAVVLDIMLPDLDGL 102

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      D+ V +L  +   +  +AG  AG + ++ KPF+ E +   +R L + 
Sbjct: 103 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 160


>gi|170755580|ref|YP_001780537.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120792|gb|ACA44628.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 223

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +RK+   + N  G+   EA     A +   +E   + ++ D  M  + 
Sbjct: 1   MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYRE-YIDLIISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +V +  +  +  F     G R G + +++KP +   +   +  L + 
Sbjct: 60  GYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E +
Sbjct: 120 SQIINERK 127


>gi|154491974|ref|ZP_02031600.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC
           43184]
 gi|154088215|gb|EDN87260.1| hypothetical protein PARMER_01604 [Parabacteroides merdae ATCC
           43184]
          Length = 688

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             LL++D S  +R   +H+FN   + + EA +  +      KE  P+ ++ D  M     
Sbjct: 441 KKLLVIDDSDQIRWFLKHVFNKE-YQILEARNGQDGINVALKEE-PDLILCDVMMPVKDG 498

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P      V  L  +V+ E +I G  AGA+ ++ KPF+ E LR  +  L +
Sbjct: 499 YETCREIKNDPKMAQTPVVMLTAKVESEDVITGIEAGADDYITKPFDVEILRSKINSLMK 558

Query: 120 MQ 121
            +
Sbjct: 559 KR 560


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    + +    L    GF V  A            +   + +++D  + G+ 
Sbjct: 1   MTSVLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREF-SQHEISIVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V +  +         I G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCKKLRQS---STVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRGR 120


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 4/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    + +         G+ V   T+   A +        + +++D  +  + 
Sbjct: 43  MTKVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV---GGCDIVILDLGLPDMD 99

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  + +  L        M+ G  +GA+ ++ KPF    L   +R L + 
Sbjct: 100 GLDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRR 159

Query: 121 QKSK-DENQFLD 131
              +  E++ ++
Sbjct: 160 AGGEVTEDEIIE 171


>gi|150006467|ref|YP_001301211.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934891|gb|ABR41589.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 379

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD       + + L  +  F V  A +  EA         P+ +++D  M  +  F
Sbjct: 15  TVLVVDDVVSNVLLLKVLLTNEKFKVITAGNGKEALSQAV-NARPDLILLDVMMPEMNGF 73

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 74  EVAERLKADPETQHIPIIFLTALNTTADIVKGFKVGANDFISKPFNKEELVIRVTHQISL 133

Query: 121 QKSKD 125
             +K 
Sbjct: 134 IAAKR 138


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LLLV+    V    +   N+ G+ V    +     ++  +    + +++D  +  +    
Sbjct: 7   LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGG-IDLVLLDIRLPDLSGLE 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R      ++ +  L      E  + G RAGA+ +L KPF  + L   +  L + 
Sbjct: 66  VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRR 122


>gi|16126701|ref|NP_421265.1| response regulator PleD [Caulobacter crescentus CB15]
 gi|221235482|ref|YP_002517919.1| response regulator PleD [Caulobacter crescentus NA1000]
 gi|60390590|sp|Q9A5I5|PLED_CAUCR RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|302425180|sp|B8GZM2|PLED_CAUCN RecName: Full=Response regulator PleD; AltName: Full=Stalked cell
           differentiation-controlling protein; Includes: RecName:
           Full=Diguanylate cyclase; Short=DGC; AltName:
           Full=Diguanylate kinase
 gi|13424011|gb|AAK24433.1| stalked-cell differentiation controlling protein [Caulobacter
           crescentus CB15]
 gi|220964655|gb|ACL96011.1| GGDEF/response regulator protein pleD [Caulobacter crescentus
           NA1000]
          Length = 454

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V  A     A     ++ LP+ +++D  M G+  F
Sbjct: 4   RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-LPDIILLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + V  +         I G  +GA+ FL KP +   L   +R L + 
Sbjct: 63  TVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  +A
Sbjct: 123 KLVIDELRQREA 134



 Score = 71.4 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +    +                +   +A          + ++++ + +     
Sbjct: 155 RVLIVDDNERQAQRVAAELGVE-HRPVIESDPEKA--KISAGGPVDLVIVNAAAKNFDGL 211

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A +R       + V  ++   D  +M+     G N  L +P + + L   ++   Q 
Sbjct: 212 RFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQR 271

Query: 121 QKSKD 125
           ++  D
Sbjct: 272 KRYTD 276


>gi|323967491|gb|EGB62908.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327254370|gb|EGE65992.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli STEC_7v]
          Length = 225

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSSVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             L+VD    + +V        GF V  A     A +   +   P+ +V+D  + G+   
Sbjct: 13  RALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTD-PDVIVLDVGLPGMDGI 71

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     TD +V  L    D   M+ G   GA+ ++ KPF+   L   ++ + + 
Sbjct: 72  EVCRTLR---TFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRR 128

Query: 121 QKSKDENQ 128
            +    ++
Sbjct: 129 PRQSAADR 136


>gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
 gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    VR       +  G+ V        A         P+ LV+D  M  +   
Sbjct: 6   RILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTA-WEPDALVLDVMMPALDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   +     V  L       + + G  AGA+ +L+KPF  + L   +R L +   
Sbjct: 65  AVCRRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 124

Query: 123 SKDENQFLD 131
               ++ L 
Sbjct: 125 PPAPDEDLA 133


>gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLEF 62
           +L+V+    +    +       + V  A     A E  E  +   + +++D  +  +   
Sbjct: 5   VLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   +  D  + +L         +AG  AGA+ ++ KPF  E L   +R + + 
Sbjct: 65  TVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122


>gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 858

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L  D +  V ++ R L     + V  A +   A +  E   +P+ +V D  M  +   
Sbjct: 611 TILFADDNDDVCQMVRTLLATR-YRVLTAPNGEVALQLAELN-IPDLVVSDVMMPQMDGL 668

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q    + + V  L      E+ IAG   GA++++ KPF+   L   +  L Q 
Sbjct: 669 ELCRRLKQTTATSHIPVILLTARTLDEQRIAGYEHGADAYITKPFSAPLLLARIHNLLQS 728

Query: 121 QKSKD 125
           +K   
Sbjct: 729 RKQLK 733


>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF+A +     E   KE   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKED-IHLVLLDIMMPGMNGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  +      I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMCKKIREN---NNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRR 120

Query: 121 QKSKDEN 127
               + N
Sbjct: 121 YTQLNPN 127


>gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 225

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L++D    + +V +    + G+ V +ATS  EA +  + E  PN L++D  +  +
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKK-QSEFNPNLLILDLMLPDI 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+      V +  L  +   + ++ G   G++ ++ KPF+ + L   +  +
Sbjct: 60  SGENVCERIRKESE---VPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAV 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LKRVK 121


>gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396]
 gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain,
           an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
          Length = 841

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD S +   V        G+    A +  +A +    E  P+ +++D  M  +  F
Sbjct: 23  TVLIVDDSPLNLDVAVACLESRGYRTLSAENGVQALQIAM-EHQPSLILLDVMMPEMNGF 81

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++    D+ V ++    D +   AG  AG   ++ KPF  E L   +     +
Sbjct: 82  ETCRKLKKLSGCDDIPVIFMTALSDVKSKKAGFDAGGVDYVTKPFQVEELAARVHTHIAL 141

Query: 121 Q 121
           +
Sbjct: 142 K 142



 Score = 81.0 bits (200), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    + +  + +  D  + V  A++  +A E   +  +   +V D  M G     
Sbjct: 720 VLVVDDDVNILRSIKRILRDEAYEVLVASNTEDAYEVLARREV-AVIVSDLQMPGESGVQ 778

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAG-ANSFLLKPFNRETLRFAMRELPQMQK 122
              +   +        L      E +      G    ++ KP++   L   +    +  +
Sbjct: 779 FFSKIKTMHPRSLRILLTGHGSSESLEGAINQGEIYRYISKPWDNAHLLETLGAAFKQYE 838


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 3/123 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++ R         V EA     A         P+ +++D  M  +  + 
Sbjct: 9   VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAG-PDLVLLDVMMPRLDGWQ 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R     + V V  L         + G R GA+ ++ KPF+   L   ++ + +    
Sbjct: 67  TLQRIREE-SAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAG 125

Query: 124 KDE 126
           + E
Sbjct: 126 QVE 128


>gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +        GF    A    EA     ++   + +++D  M  +   
Sbjct: 5   TILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLV-RDNDIDLIILDVMMPNLNGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++   +  ++ +  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 64  ETCLKIREI-KEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRR 120


>gi|116622000|ref|YP_824156.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225162|gb|ABJ83871.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 557

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      ++   +    G+ V  A S         K   P  +++D  M G+  F
Sbjct: 6   TILVVDDDSDSLRLLTDILTAEGYRVRPADSGQL-ALASAKAAAPELIMLDIRMPGMDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + + +L      +  + G   GA  F+ KP+ R  L   +R   ++
Sbjct: 65  EVCRRLQADEKTRRIPIIFLSAAGQLQDRVLGLSLGAADFISKPYERPELLARVRTHMEL 124

Query: 121 QKSKDENQ 128
            + +   +
Sbjct: 125 GRLRAHLE 132


>gi|319781847|ref|YP_004141323.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167735|gb|ADV11273.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 238

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M S   +L+VD    +R + +  F   G     A    E  E   + +  + +V+D  + 
Sbjct: 1   MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIE-METILRRVQVDLIVLDVMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G   LE    +R         +  L    +    + G   GA+ ++ KPF+   L   +R
Sbjct: 60  GKSGLELCRDLRAQYS---TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIR 116

Query: 116 ELPQMQKSKDENQ 128
            + +   + +  +
Sbjct: 117 AVLRRNGAAEPKR 129


>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R +      + G+ V +A+   EA +    +   + +++D  M  +    
Sbjct: 6   VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQ-ISNDNEVDLVILDIMMPKMDGIE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             +R M    ++ +  L  +      I G   GA+ +++KPFN   L   ++   +  K
Sbjct: 65  VCMR-MRKSKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYK 122


>gi|288929066|ref|ZP_06422912.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330050|gb|EFC68635.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 898

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++L  D +  V ++ R L     + V  A +   A +  E   +P+ +V D  M  +  L
Sbjct: 655 TILFTDDNDDVCQMARTLLETH-YRVLTAPNGVVALQMAELN-IPDLVVSDVMMPQMNGL 712

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  + ++Q    + + V  L      E+ I G   GA++++ KPF+   L   ++ L Q 
Sbjct: 713 ELCSRLKQSTATSHIPVILLTARTLDEQRIEGYEHGADAYITKPFSAPLLLARIQNLLQS 772

Query: 121 QKSKDE 126
           +K   +
Sbjct: 773 RKQLKQ 778


>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
 gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
          Length = 220

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + ++        G+ V  A    EA EF +     + +V+D  M  +  F
Sbjct: 2   KILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKY-DAIVLDAMMPVMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    V +L      E +IAG   GA+ +++KPF+   L   +R + + + 
Sbjct: 61  EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120

Query: 123 SKDENQFL 130
           +  +N+ +
Sbjct: 121 ATADNEII 128


>gi|254562811|ref|YP_003069906.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Methylobacterium extorquens DM4]
 gi|254270089|emb|CAX26076.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Methylobacterium extorquens DM4]
          Length = 270

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R +  +     G  V  A    +           + +V+D  M G     
Sbjct: 30  VLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQ-MRAFLDADRVDLVVLDVMMPGDDGLV 88

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         V  L    D    I G   GA+ +L+KPF    L   ++ + +  
Sbjct: 89  LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRT 147

Query: 122 KSKDEN 127
           +    N
Sbjct: 148 RMLPPN 153


>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + R      GF V  A       +   +E   + +++D  +  V 
Sbjct: 1   MSKILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEED-FDLIILDLMLPEVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFDICRQVREI---KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 DRYE 120


>gi|307154499|ref|YP_003889883.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7822]
 gi|306984727|gb|ADN16608.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 7822]
          Length = 315

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     R + +    + G+ V  A    E      +   P+ +++D  M  +  F 
Sbjct: 15  ILVVDDDRSTRTLLKVAMEEEGYRVVTAKDGEECLNEYNR-CQPDMVLLDAVMPEMDGFS 73

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               + ++  G ++ +  +    D + +      GA  ++ KP +   L   ++ L 
Sbjct: 74  CCKRLTEISQGHNIPILMITALDDQDSIDQAFACGAVDYITKPIHWAVLAQRVKRLL 130


>gi|172037291|ref|YP_001803792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698745|gb|ACB51726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 329

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           ++++D      K+   + ++ G+ V ++ +   A +  E    P+ +++D  M  +    
Sbjct: 14  IMVIDDHVDNLKLLSDMLDEQGYEVRQSLNGLTALKSIELSS-PDLILLDLKMPDMDGYT 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++ P   D+ V ++    +    +     G   ++ KPFN   +   +    +++
Sbjct: 73  VCQKLKKNPKVQDIPVIFISASDEVLDKVKAFSVGGCDYISKPFNLAEVLARVENQLKVK 132

Query: 122 KSK----DENQFLDAI 133
           + +    D N  L+++
Sbjct: 133 RLQQALKDRNTHLESL 148


>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 246

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +R +      + G+ + +A    E  E  E   + + +V+D  M  +   
Sbjct: 18  TILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEV-HLVVLDIMMPKIDGI 76

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+     ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 77  HMCMKVREQ---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRR 133


>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 236

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A       E        + L++D  + G   L
Sbjct: 8   RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNY-DLLILDWMLPGKTGL 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+   G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 67  EICQELRRQ--GKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 124

Query: 121 QKSK 124
             S+
Sbjct: 125 SSSQ 128


>gi|56416693|ref|YP_153767.1| response regulator PleD [Anaplasma marginale str. St. Maries]
 gi|222475058|ref|YP_002563473.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
 gi|255003037|ref|ZP_05278001.1| response regulator PleD [Anaplasma marginale str. Puerto Rico]
 gi|255004160|ref|ZP_05278961.1| response regulator PleD [Anaplasma marginale str. Virginia]
 gi|56387925|gb|AAV86512.1| hypothetical protein AM475 [Anaplasma marginale str. St. Maries]
 gi|222419194|gb|ACM49217.1| Putative two-component response regulator with GGDEF and receiver
           domains [Anaplasma marginale str. Florida]
          Length = 455

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      K+ +       + V  A S  EA +   +E  P+ +++D  M G+   
Sbjct: 4   KILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLA-REKHPDLILLDVMMPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R  P  T + V  +    +     + G  AGA+ FL KP N   L   +R L +
Sbjct: 63  ETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSLTR 122

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 123 FKILVDELRL 132



 Score = 54.8 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 41  CEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKM---IAGARA 95
            +     +  +ID +  G     F ++ R         +  L    + + +         
Sbjct: 195 LQNAESYDLFIIDLNF-GGDGLRFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEI 251

Query: 96  GANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129
           G + +++ P +   L        + ++ +D  + 
Sbjct: 252 GISDYIMAPVDSNELLARTNVQVKRKRYQDALRM 285


>gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 228

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVLEF 62
           +L+V+    +    +       + V  A     A E  E  +   + +++D  +  +   
Sbjct: 5   VLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R   +  D  + +L         +AG  AGA+ ++ KPF  E L   +R + + 
Sbjct: 65  TVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122


>gi|134291928|ref|YP_001115697.1| two component AraC family transcriptional regulator [Burkholderia
           vietnamiensis G4]
 gi|134135117|gb|ABO59442.1| two component transcriptional regulator, AraC family [Burkholderia
           vietnamiensis G4]
          Length = 274

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++   +       +  A    +A    +  ++P+ +++D  M  +  F 
Sbjct: 22  ILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQA-IVPDLILMDVRMPRMDGFA 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +   P   ++ V  L    D +  IAG   GA  +++KPF    +   +R   +  
Sbjct: 81  ACRLLASTPDTQNIPVIILTAAGDLDDRIAGLETGALDYIVKPFEPAEVIARIRNHLKRA 140

Query: 122 KSKD 125
           +   
Sbjct: 141 RRSQ 144


>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 225

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +    +    + G++V  A    E   +   E     +++D  + G+  F
Sbjct: 2   RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEG-RYLATEGEYALVLLDVMLPGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +    +V V  L      E  + G + GA+ +L+KPF+   L   ++ L +  K
Sbjct: 61  TV-LQAIRRTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGK 119

Query: 123 SKD 125
           ++D
Sbjct: 120 AQD 122


>gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 239

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 5   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 122 RQEAMGQNILLA 133


>gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 224

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    ++K+ + +    G+ V  A    +A E  +   + + ++ D  M  + 
Sbjct: 1   MFNILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHV-DLIICDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           ++ V  +     F+    G   G + +++KP + + +   +  L + 
Sbjct: 60  GYALTDTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRR 119

Query: 121 QKSKDENQF 129
            +  +E + 
Sbjct: 120 SRIINERRL 128


>gi|239817207|ref|YP_002946117.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus S110]
 gi|239803784|gb|ACS20851.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus S110]
          Length = 356

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  ATS  +A +    +  P+ +++D  M G+  F 
Sbjct: 20  VLIVDDVPDNLAVLHDALDESGYTVLIATSGEQALQRA-AQARPDIVLLDAMMPGIDGFE 78

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + + ++    + E ++A   AG   ++ KP   + +   M    Q  
Sbjct: 79  VARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGA 138

Query: 122 KSKDENQF 129
           +   ++  
Sbjct: 139 RRARQDAR 146


>gi|307153265|ref|YP_003888649.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306983493|gb|ADN15374.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 123

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+ S + R++  +L  D+G  V  A    EA EF E    P+ +V+D  M  + 
Sbjct: 1   MREVLLVEDSQVQREMISNLLRDYGLNVSIACDGVEALEFIET-FNPDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P    + V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKSDPKTKHLPVVLCSSKGEEFDRYWGMKQGADAYIAKPFQPVELLGTIKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|189467801|ref|ZP_03016586.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM
            17393]
 gi|189436065|gb|EDV05050.1| hypothetical protein BACINT_04193 [Bacteroides intestinalis DSM
            17393]
          Length = 1364

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    +    +       + +    +  EA +    +  P+ ++ D  M  +   
Sbjct: 1113 RILIVEDEEEILSYLKEELEG-DYRIMTRKNGREAYDTILADT-PDLVISDIMMPEMDGL 1170

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      V V  L  +   E  + G   GA+++++KPFN E L+  +  L   
Sbjct: 1171 SLCRKIKQNTNVNHVPVILLTAKSKPEDTMEGMATGADAYMVKPFNTELLKSTIANLIAN 1230

Query: 121  QKSKD 125
            +K   
Sbjct: 1231 RKLLK 1235


>gi|189466029|ref|ZP_03014814.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM
           17393]
 gi|189434293|gb|EDV03278.1| hypothetical protein BACINT_02393 [Bacteroides intestinalis DSM
           17393]
          Length = 375

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       + + L  +  F +  A++  +A E  +KE  P+ +++D  M  +  F
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKEN-PDLVLLDVMMPDMSGF 69

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++  P   D+ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 70  EVAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129

Query: 121 QKSKD 125
             +K 
Sbjct: 130 VAAKR 134


>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 224

 Score =  133 bits (337), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATY-DLIVLDIMIPGINGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|317474377|ref|ZP_07933651.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909058|gb|EFV30738.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1306

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLV+ +  + K       ++ F +  AT   EA +  + E LP  ++ D  M G+   
Sbjct: 1055 TILLVEDNEQILKYLTDKLTEY-FNIVTATHGEEALKLVD-EYLPEIVISDIMMPGMDGL 1112

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H+++  L  D+FV  L  +   E  + G + GA+ ++ KPF+ E L   +  +   
Sbjct: 1113 TLCRHIKENSLYADIFVILLTAKTSSEDELRGYKEGADIYIKKPFDTEALINQIMNILNT 1172

Query: 121  QKSKDEN 127
            ++ + E 
Sbjct: 1173 RQKRKEQ 1179


>gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202]
 gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202]
          Length = 243

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+  + +  +  H     G  V  A +  +A E        + +++D  M     
Sbjct: 13  KLILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIE-IHATQPIDLVILDIKMPELNG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +RQ        V  L         +   R GA+ F++KPFN   +   ++ + +
Sbjct: 72  WEVLNKIRQKAA---TPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLR 128

Query: 120 MQKSKDE 126
             +   +
Sbjct: 129 RTQQNQQ 135


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+V+     R      F + G++V  A+   E       +   + +V+D  + G+  
Sbjct: 3   RRLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHA-TDGGFDAVVLDRMLPGLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G    V  L      ++ + G RAGA+ +L+KPF+ + L   +  L +  
Sbjct: 62  LAVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRP 121

Query: 122 KSKDE 126
           +  +E
Sbjct: 122 QESEE 126


>gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
 gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF+A +     E  EKE   + +++D  M G+   
Sbjct: 5   NILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEE-IHLVLLDIMMPGMNGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  +      I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMCKKIREN---NNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120

Query: 121 QKSKDEN 127
               + N
Sbjct: 121 YTQLNPN 127


>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 224

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|91209736|ref|YP_539722.1| DNA-binding transcriptional activator KdpE [Escherichia coli UTI89]
 gi|91071310|gb|ABE06191.1| transcriptional regulatory protein KdpE [Escherichia coli UTI89]
 gi|294493448|gb|ADE92204.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli IHE3034]
 gi|307627881|gb|ADN72185.1| DNA-binding transcriptional activator KdpE [Escherichia coli UM146]
          Length = 225

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K+     +  GF +  A S  EA     KE   +++++D  M G+  
Sbjct: 3   KKILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCAL-KENHIDFIILDIMMPGMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+     +V + +L         I G   GA+ ++ KPF+ + L   +R   +
Sbjct: 62  LDVCRSIRKS---YNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFR 118

Query: 120 M 120
            
Sbjct: 119 K 119


>gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR + +       + V  A     A    E +  P+ +++D ++  V+ F
Sbjct: 5   KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFE-QFNPDLVILDINLPDVIGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               ++M     VFV  L    D    I G   GA+ +L KPF    L   +  + + Q+
Sbjct: 64  -NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQR 122

Query: 123 --SKDENQFL 130
             +  E + L
Sbjct: 123 VVTTAEQKRL 132


>gi|87123720|ref|ZP_01079570.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168289|gb|EAQ69546.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 242

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +  + R   +  G+ V  A+    A     ++  PN +V+D ++     +
Sbjct: 10  RVLLVDDESRLTDLLRLELDVEGYAVDVASDGASALIKARQDPAPNLIVLDWNLPDFTGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    +  L    D    +    AG + +L KPF+ E L   +R + + 
Sbjct: 70  DICQRIR--SSGVTTPILMLTGHDDIADRVKALDAGVDDYLTKPFSIEELMARLRAMQRR 127

Query: 121 QK 122
            +
Sbjct: 128 AE 129


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  + +++    +  + ++     G+ V+ A    E     + + L + +++D  +    
Sbjct: 1   MQRIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDL-DLVLLDIMLPKKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +RQ     +V +  +  + D    +     GA+ ++ KPF    +   ++   
Sbjct: 60  GLEICKEIRQ---TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARL 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRK 119


>gi|282890755|ref|ZP_06299275.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499348|gb|EFB41647.1| hypothetical protein pah_c026o086 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 410

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD + +   + R +     + V  A +  EA EF +K+     ++ D +M  +  
Sbjct: 7   KTILVVDDTPLQAIMLRRVLVQANYDVLTAKNGAEALEFLKKQK-FALVITDVNMPIMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++         V    +    E +I G  AGA++++ KP+N + L   ++EL  
Sbjct: 66  FKLCRIIKTDLNLRSTPVIICTVLASPEDLIKGIEAGADNYITKPWNNDLLLLRIKELVG 125

Query: 120 MQKS 123
              S
Sbjct: 126 RSSS 129


>gi|255012649|ref|ZP_05284775.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Bacteroides sp. 2_1_7]
          Length = 645

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D S  +R   RH+F    + V EA +  E  E    E  P++++ D  M     
Sbjct: 391 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 448

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +P    V V  L  +V+ E +IAG   GA+ ++ KPF+ E LR  +  L +
Sbjct: 449 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 508

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 509 RR---DEMRR 515


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|224539619|ref|ZP_03680158.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518770|gb|EEF87875.1| hypothetical protein BACCELL_04527 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 375

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       + + L  +  F +  A++  +A E  +KE  P+ +++D  M  +  F
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATASNGRQALEQVDKEN-PDLVLLDVMMPDMSGF 69

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++  P   D+ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 70  EVAQHLKANPKTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129

Query: 121 QKSKD 125
             +K 
Sbjct: 130 VAAKR 134


>gi|189467816|ref|ZP_03016601.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM
            17393]
 gi|189436080|gb|EDV05065.1| hypothetical protein BACINT_04208 [Bacteroides intestinalis DSM
            17393]
          Length = 1331

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 12/140 (8%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +RK          F + E  +  EA     K   P+ ++ D  M  +    
Sbjct: 1073 VLVVEDDEEIRKYICRELAS-DFHMHECANGKEALTLILK-KEPDLIISDIMMPEMDGLT 1130

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF-AM-----R 115
                ++Q      + +  L  +   E  + G   GA+++++KPF+ E LR  A+     R
Sbjct: 1131 LCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKTAINLIKSR 1190

Query: 116  ELPQM--QKSKDENQFLDAI 133
            E+ +     S+ + Q L  +
Sbjct: 1191 EILRNSFSGSQMQEQKLKKL 1210


>gi|219847785|ref|YP_002462218.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Chloroflexus aggregans DSM 9485]
 gi|219542044|gb|ACL23782.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Chloroflexus aggregans DSM 9485]
          Length = 351

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +R +   L      +V  A S         +E LP+ +++D  M  +  F
Sbjct: 7   NVLVIDDDPNIRDILSDLLKRERCVVRTAASGQLGIAAAHEE-LPDLILLDVMMPDLDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
                +R  PL  +V +  +    D +  + G  AGA+ FL KP     LR  +R    +
Sbjct: 66  TVCRMLRDDPLTAEVPIIMITALDDRKSRLEGMNAGADEFLAKPVELSELRLRVRTMQRI 125

Query: 118 PQMQKSKDENQF 129
            + ++  +E + 
Sbjct: 126 NRYRRLIEERER 137


>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
          Length = 233

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF V++  +  EA E C +    +  ++D  +  +  F
Sbjct: 4   NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALE-CIESKDLDMAILDIMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +++    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  HICQKIREKYYY---PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119


>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
 gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
           glutamicum]
 gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + K+ +      G+ V EA+S  EA         P+  VID  +  + E 
Sbjct: 5   KILVVDDERAILKLMQIALKGHGYEVLEASSGEEAL-VVASTKRPDLAVIDWGLPDM-EG 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  +R++   + + V  L +    E  IA   AGA+ +++KPF    L   +R   +   
Sbjct: 63  IEVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAA 122

Query: 123 SKDENQFLDA 132
              +   ++A
Sbjct: 123 RVQDEPVIEA 132


>gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+V+    +       F    + V  A     A +  +     + +++D  +     F  
Sbjct: 2   LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 61

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +G    V  +    + E  + G   GA+ ++ KPFN E L   ++ + Q 
Sbjct: 62  LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQR 117


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++    + ++  +     GF V          E   +E   + +++D  + G+  
Sbjct: 3   QRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESY-DLILLDLMLPGMNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  L  +    +++ G ++GA+ ++ KPF    L   +  + +  
Sbjct: 62  LDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRT 121

Query: 122 KSKDE 126
              DE
Sbjct: 122 SGGDE 126


>gi|301308109|ref|ZP_07214063.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one-component system) [Bacteroides sp. 20_3]
 gi|300833579|gb|EFK64195.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one-component system) [Bacteroides sp. 20_3]
          Length = 633

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D S  +R   RH+F    + V EA +  E  E    E  P++++ D  M     
Sbjct: 379 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 436

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +P    V V  L  +V+ E +IAG   GA+ ++ KPF+ E LR  +  L +
Sbjct: 437 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 496

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 497 RR---DEMRR 503


>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +  + GF    A     A     +E  P+ +++D  + G   +
Sbjct: 5   KILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRE-RPDLVLLDLMLPGIDGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +DV +  L  + D   ++ G  +GA+ ++ KPF    L   +R   + 
Sbjct: 64  EVCRLIR---DESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRE 120

Query: 121 QKSK 124
            ++K
Sbjct: 121 GEAK 124


>gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 244

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 6/132 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R   +    D G  V E      A     +    + +V+D  M G     
Sbjct: 7   ILVVDDDRRIRTSLKRFLTDNGMRVTEVADGV-AMFAAVEAGRFDLIVLDVMMPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     + + V  L         I G   GA+ ++ KPF+   L   +R + +  
Sbjct: 66  LCRRLR---GTSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRRT 122

Query: 122 KSKDENQFLDAI 133
                   +  +
Sbjct: 123 GDAASETRVAGL 134


>gi|322419693|ref|YP_004198916.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320126080|gb|ADW13640.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 453

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S    K    +  + G+ V  A +  +A +    +  P+ ++ D  M  +  F
Sbjct: 14  RILIVDDSPTQAKFLELMLVEQGYRVQVARNGSDALDRILSQ-APDLVISDILMPEMDGF 72

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR +    D+ +  L    D   ++     GA+ F+ KP++R  L   +R + + 
Sbjct: 73  ELCRRVRALDQAGDLPIILLTHLNDPADVLHSLEVGADYFVSKPYSRTLLLSRIRSVLEG 132

Query: 121 QKSKDENQ 128
           ++S  + +
Sbjct: 133 ERSCRQGE 140


>gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 229

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + +++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMDISSY--HLILLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122

Query: 121 Q---KSKDENQFL 130
               +++   + L
Sbjct: 123 TATMEAEKAPERL 135


>gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V EA++  EA +   ++ + N  ++D  + G+ 
Sbjct: 4   MSAILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTV-NVALLDVMLPGID 62

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L   V  E  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 63  GFQVCKAIR--EENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLL 120

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 121 RRIEVHEE 128


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++         F V+ A S  EA     +E+ P+  ++D  M G+  F
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEAL-RVAREVNPDAYILDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   ++ I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 67  ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126

Query: 123 SKDE 126
           + +E
Sbjct: 127 AAEE 130


>gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 233

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+ D +  V +       +       A    EA E    E  P+ +++D  M     
Sbjct: 5   KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEK-PDLVILDLMMPKIFG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R++   ++V +  L  + +    I G   GA+ +++KPF+   +   ++ + +
Sbjct: 64  TEVCKEIRKI---SNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|158339629|ref|YP_001521018.1| response regulator receiver, CheY-like protein [Acaryochloris
           marina MBIC11017]
 gi|158309870|gb|ABW31486.1| response regulator receiver, CheY-like protein [Acaryochloris
           marina MBIC11017]
          Length = 425

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 58/126 (46%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    +  +   +     + V++A+S  E  +   K +LP+ +++D +M  +    
Sbjct: 160 ILVVDDQPNIMNLLTSIMEQDEYEVWQASSGAEGLQMAAK-VLPDLILLDVNMPDMDGYT 218

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P  T + + ++    +    + G   G + ++ KPFN   +   + +  +++
Sbjct: 219 VCQQLKADPQTTAIPIIFVSALDESWDKVKGFSVGGSDYITKPFNTLEVIVRIEDQLKIR 278

Query: 122 KSKDEN 127
           + +D+ 
Sbjct: 279 QIQDQM 284



 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD       +   +    G+ +++A S  EA       +LP+ +++D +M  +   +
Sbjct: 306 ILMVDDEPKNLALLTDVLEQEGYEIWQADSGAEAL-RVAGMVLPDLILLDINMPDMQGYD 364

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++       + V ++    +    +     G + ++ KP     L   M+   Q+
Sbjct: 365 VCQQLKANAKTKLIPVIFVSALDETWDKVKAFSVGGSDYINKPIQIVELMARMKHQLQI 423


>gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|29346142|ref|NP_809645.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338037|gb|AAO75839.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 231

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +  + +    + GF +  A+   E       EL P+ LV D  M  +  F
Sbjct: 7   TVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFF-ELRPDVLVADVMMPKMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 66  EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALM 121


>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 240

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|226943678|ref|YP_002798751.1| Response regulator, transciptional regulatory protein [Azotobacter
           vinelandii DJ]
 gi|226718605|gb|ACO77776.1| Response regulator, transciptional regulatory protein [Azotobacter
           vinelandii DJ]
          Length = 225

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL+D    + ++        GF V        AR     E  P+ +V+D  +    
Sbjct: 1   MSELLLIDDDCELCELLGSWLTQEGFQVRACHDGQAARGAL-AEKTPDVVVLDVMLPDGS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      D+ V  L    +    I G   GA+ +L KP +   L   +R + + 
Sbjct: 60  GLELLKQLRGNFPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119

Query: 121 QKSKDENQFLD 131
            +    +  L+
Sbjct: 120 SQPPATSSQLE 130


>gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    + K  + +     + V        A E+       + +++D  M      
Sbjct: 2   RLLLAEDEKALAKALKAILERSNYSVDAVYDGEAALEYMAAGNY-DGIILDIMMPKKDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G+ + V  L  + + +  + G  AGAN +L KPF+ + L   +R      +
Sbjct: 61  TVLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLARLRA-MTRVQ 119

Query: 123 SKDENQFLDA 132
            + E+  L A
Sbjct: 120 MESEDSQLKA 129


>gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 228

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L V+    + +    L     + V  A       ++     + + LV+D  +  +   
Sbjct: 2   RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYA-ASGVYDILVLDIMLPKIDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         +  L  + + +  + G  AGA+ +L KPF  + L   +R L + + 
Sbjct: 61  TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLGRRKD 120

Query: 123 SKDENQFLD 131
              +   L 
Sbjct: 121 LDYQEDQLA 129


>gi|269126865|ref|YP_003300235.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
 gi|268311823|gb|ACY98197.1| GAF sensor hybrid histidine kinase [Thermomonospora curvata DSM
            43183]
          Length = 1303

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +   +G  V  A       +  ++      +++D  M G+  
Sbjct: 1179 RKVLIVDDDVRNVFALASVLEGYGMEVLYAEDGQAGIDLLQRNPDVALVLMDVMMPGLDG 1238

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  +R MP  TD+ +  +  +           +GA+ ++ KP + + L   MR   +
Sbjct: 1239 YATTEAIRGMPQFTDLPIIVITAKAMKGDREKSLASGASDYIPKPVDVDHLLDIMRTWLR 1298

Query: 120  MQKSK 124
               ++
Sbjct: 1299 RSAAR 1303


>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 224

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|94499427|ref|ZP_01305964.1| putative response regulator [Oceanobacter sp. RED65]
 gi|94428181|gb|EAT13154.1| putative response regulator [Oceanobacter sp. RED65]
          Length = 560

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD     R++ + L  D G  V EA +  EA     K    + +++D  M  +    
Sbjct: 3   ILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEF-KSGDFDLVLMDVIMPIMDGLE 61

Query: 64  AHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           A  R   +G +   V V +L    D + +     +G + FL KP+N   L+  +    ++
Sbjct: 62  ATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEVILKAKIHAHLRI 121

Query: 121 QKSKDENQFLDAI 133
           ++   +    +A+
Sbjct: 122 RELTRDISEKNAV 134


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +  +  +     GF    A++             P+ +++D  +    
Sbjct: 1   MSRILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHP-PDLVLLDLMLPDVA 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  ++         V  +  +      + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GSEVLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVL 119

Query: 119 QMQKSKD 125
           +   ++D
Sbjct: 120 RRADAED 126


>gi|118580478|ref|YP_901728.1| response regulator receiver protein [Pelobacter propionicus DSM
           2379]
 gi|118503188|gb|ABK99670.1| response regulator receiver protein [Pelobacter propionicus DSM
           2379]
          Length = 217

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +    ++      D  + ++ AT+  EA         P+ +++D  M  +  
Sbjct: 4   QRILIVDDTPENLQLLYRTLRDE-YDLYGATNGREAL-MIAAAQQPDLILLDIMMPEMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      DV V +L    +    + G   GA  ++ KPF    ++  +     
Sbjct: 62  YEVCRRLKSSEELRDVPVLFLTALSEDSDELRGLEIGAVDYITKPFKTAVVKRRIDTHLA 121

Query: 120 MQKSKDENQFLDA 132
           +++  D+    +A
Sbjct: 122 LKRKTDQLARSNA 134


>gi|186686365|ref|YP_001869561.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186468817|gb|ACC84618.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 431

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +    +V     +   F V+ A S  +A +  E + LP+ +++D  M G+  F 
Sbjct: 21  VLVVDDNPANLQVLSSFLDQSSFEVWAARSGEKALQRLENDDLPDLILLDVMMPGIDGFE 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ V ++    +    + G + GA  ++ KPF  E +   +    +++
Sbjct: 81  TCKQLKSNPRVQDIPVIFMTALSETADKVKGLQLGAVDYITKPFQHEEVLVRIENHLKLR 140

Query: 122 KSKD 125
               
Sbjct: 141 NLTK 144


>gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + K+ R  F    + V  A    EA +       P+ +++D +M G+
Sbjct: 1   MQYKILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIR--PEPDIILLDINMPGI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R         + +L  +V+ +  + G  +G + ++LKPF+ + L   +   
Sbjct: 59  DGLDVCRQIR---DKVMCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAH 115

Query: 118 P---QMQKSKDENQFLDAI 133
               +  + + E +FL+ +
Sbjct: 116 LKREERHRGQTEYRFLNGL 134


>gi|317125394|ref|YP_004099506.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589482|gb|ADU48779.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + +         GF V +A     A         P+ +V+D  + G  
Sbjct: 1   MSRILVVEDDLTINQTVTDRLRAEGFDVVQAHDGPRAV-AAHATHEPDLVVLDVMLPGFD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    ++       V V  L    D   +  G   GA+ ++ KPF    L   +R L 
Sbjct: 60  GLEVCRRIQAS---RAVPVLMLTARDDETDLPVGLAVGADDYVTKPFRMRELVARVRALL 116

Query: 119 QMQKSKDEN 127
           +  +   + 
Sbjct: 117 RRVERAGQL 125


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++    + ++  +     GF V          E   +E   + +++D  + G+  
Sbjct: 3   QRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESY-DLILLDLMLPGMNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G    +  L  +    +++ G ++GA+ ++ KPF    L   +  + +  
Sbjct: 62  LDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRT 121

Query: 122 KSKDE 126
              DE
Sbjct: 122 SGGDE 126


>gi|271965271|ref|YP_003339467.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508446|gb|ACZ86724.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R       F V  A     A      +  P+ +V+D  +  + 
Sbjct: 1   MTRVLVVDDEPQILRALRINLLARHFEVAVAPDGGSALRQA-ADWHPDLVVLDLGLPDID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T V +  L      +  +    AGA+ ++ KPFN E L   MR + + 
Sbjct: 60  GV-DVIHGLRGWTAVPIIVLSGRAGNQDKVEALDAGADDYVTKPFNIEELLARMRAVTRR 118

Query: 121 QKSKD 125
              +D
Sbjct: 119 TAVQD 123


>gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    + K+      D+ + V    +     E   K   P+ +++D  M      
Sbjct: 4   NILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLM-LEKYLKSSKPSVIILDIMMPHINGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+    +D+ V  L    + E  IAG  AGA+ +L KPF    L   +  + + 
Sbjct: 63  DLCKKLRKN---SDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKR 119


>gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
 gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
          Length = 251

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + K         G+    A++  E          P+ +++D  +  +   
Sbjct: 28  RILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANN-PDVILLDLGLPDIDGL 86

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              + Q+   +D+ +  +       + +     GA+ ++ KPF+   L   +R   +  +
Sbjct: 87  TV-LEQVRQSSDIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRKHQ 145


>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
          Length = 233

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + K      ++ G+ +FEA    EA    EKE   + +V+D  M  +   
Sbjct: 5   NILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEE-IHLIVLDIMMPKLDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           IA + ++    +V V +L  + +    I G   GA+ ++ KPFN   L   ++ L + 
Sbjct: 63  IATITKVREKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRR 120


>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 229

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   + +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDY-DLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 232

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  V        GF          A         P+  ++D  + GV  
Sbjct: 6   QRILVVEDEPDIADVVLDYLRHSGFEAEHLAEGPAALARLTGPTPPDLTLLDIMLPGVDG 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ    TD  +  L   V+    + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 66  L-EVLRQARRHTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRR 123


>gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ   G   +V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQ--TGNTTYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|330448384|ref|ZP_08312032.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492575|dbj|GAA06529.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 221

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +   +  D G  V        A  + +   + + +++D  +  + 
Sbjct: 1   MSKILVVDDDVQLCALLTEVLEDEGHEVNCVHCGESALTYLQSTGV-DLVLLDVMLPNLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ FL+KPF  E L   +  + + 
Sbjct: 60  GMQVARRICQRFA-TPILMLTALGDETTMLDGLQAGADQFLVKPFKVEELLARISAILRR 118

Query: 121 QKSKDENQFL 130
              + + Q L
Sbjct: 119 VGLERQRQCL 128


>gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4]
 gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4]
          Length = 232

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LLLVD    +R +   L  + G+ V  A +  EA   C   L  + L++D  M G   L+
Sbjct: 13  LLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEA-RTCLSGLSFDLLILDVMMPGETGLD 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + +R     +DV +  L    D    IAG   GA+ +L KPF  + L   +  + + 
Sbjct: 72  LASWLR---DHSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRR 127


>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 231

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M   +L++D    + ++      + G+ +++A    EA          + +++D  M   
Sbjct: 2   MKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLH-QIDLMILDIMMPKR 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L
Sbjct: 61  NGLEVCQQVREE---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKAL 117

Query: 118 PQMQKSKD 125
            +    + 
Sbjct: 118 LRRSSFQQ 125


>gi|269839127|ref|YP_003323819.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790857|gb|ACZ42997.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 231

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++        G  V  A ++ EA E       P+ +++D  +      
Sbjct: 8   RVLVVEDEPPILRMLASNLRSHGMQVLTAATLREAMEK-HATFRPDVILLDLRLPDGRG- 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +RQ+ L + V +  L    +  + +A    GA+ +L KPF  + L   +R   +   
Sbjct: 66  EELIRQVRLTSTVPIIVLSAYGEEGQKVAALEMGADDYLTKPFGVKELLARIRVALRRAA 125

Query: 123 SKDENQ 128
            K   +
Sbjct: 126 GKASGE 131


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+ + + + V + +    G  V  A +  EA E  +     + +++D  M   G +E
Sbjct: 573 VLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAID-NRHFDVVLMDVQMPVMGGIE 631

Query: 62  FIAHVRQMPL---------GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
               +R                V +  +             +AG + ++ KP   E L  
Sbjct: 632 ATQAIRAREARRSWVLAGDWKPVPIIAMTAHAMEGDRERCLQAGMDDYVAKPVRPEALFA 691

Query: 113 AMRELP 118
           A+  + 
Sbjct: 692 AIERVL 697



 Score = 54.4 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 8/132 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSV---CEAREFCEKELLP---NYLVIDES 55
             +L+  ++            +       A S     +A         P     +  D  
Sbjct: 417 TRVLVASANAAFADFLCATLQEAALRAEAACSGVAVEQALARAADGSDPFAFLLMDADLP 476

Query: 56  MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSF-LLKPFNRETLRFAM 114
             G               D  +  +         +     G   + L KPF+ E L   +
Sbjct: 477 EPGGFALAQRFAAAWPRPDRIIPMMASHSQRNDALRCEELG-LGYRLAKPFSAEDLLAVL 535

Query: 115 RELPQMQKSKDE 126
           R     ++   E
Sbjct: 536 RMAQGGEREAAE 547


>gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 230

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+V+    + ++  +     GF    +++  +A     +    + +++D  + G+  F 
Sbjct: 6   LLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVR-KSFDLVLLDVMLPGIDGFE 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +RQ  L  D+ +  L  + +    I G   G + +++KPF+   L   +R + +  
Sbjct: 65  VCRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFKRD 124

Query: 122 K 122
           +
Sbjct: 125 R 125


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    +  + +    D  + +    +  EA +    E   + +++D  M  V  
Sbjct: 19  RRILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAF-NESKFDVVILDVMMPYVDG 77

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  R     +DV +  L      + ++ G   GA+ ++ KPF    L   +  + +  
Sbjct: 78  FEACQRIRER-SDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRV 136

Query: 122 K 122
           +
Sbjct: 137 E 137


>gi|119776626|ref|YP_929366.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119769126|gb|ABM01697.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 120

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA +  EA +  +     + ++ D +M  + 
Sbjct: 1   MKKILAVDDSASMRQMVGFTLKTAGFDVTEACNGDEALKAAQAGQY-DLVISDVNMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I ++R +P      +  L  E   +K   G  AGA  +++KPFN E L   +R++ 
Sbjct: 60  GITLIRNLRTLPAYKFTPLLMLTTESGGDKKQEGRAAGATGWIVKPFNPEQLLATVRKVL 119


>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +    GF         +A +    E  P+ +++D  + G   +
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTE-RPDLILLDLMLPGVDGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           E    VR       V +  L    D   ++ G  +GA+ +++KPFN + L   +R   +
Sbjct: 63  EICTRVRAESG---VPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLR 118


>gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
 gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
          Length = 223

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K  R L  + GF V  A +  EA E   +    + +++D  +    
Sbjct: 1   MRRILIVEDERQIVKHLRALLEEEGFSVDTAATRAEA-ESALEGDRFDLILLDLMLPDGN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +      +  G +  V +L    D   ++ G   GA+ ++ KPF    L   ++   + 
Sbjct: 60  GYALCTEILHRG-NTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRR 118

Query: 121 QKSKD 125
                
Sbjct: 119 SGRAQ 123


>gi|295085734|emb|CBK67257.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1311

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++LL+V+    +R   R  F    + V +     EA   C     P+ ++ D  M G   
Sbjct: 1040 NTLLIVEDHETLRHYLRQTFEHL-YRVIDVADGHEAI-ACLANEYPDIILSDVMMPGIRG 1097

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    V++ P  + + V  L  + + E ++ G + GA+ ++ KPF+ E L+   + L  
Sbjct: 1098 DELCRMVKENPDTSGIPVVLLTAKANHEAIVEGLKKGADDYIPKPFSTEILKLKEQGLID 1157

Query: 120  MQKSKDENQFLDAI 133
             +  + +     AI
Sbjct: 1158 NRNRQRQFFMRQAI 1171


>gi|254994902|ref|ZP_05277092.1| response regulator PleD [Anaplasma marginale str. Mississippi]
          Length = 455

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      K+ +       + V  A S  EA +   +E  P+ +++D  M G+   
Sbjct: 4   KILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLA-REKHPDLILLDVMMPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R  P  T + V  +    +     + G  AGA+ FL KP N   L   +R L +
Sbjct: 63  ETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISAGADDFLTKPINDVALFSRIRSLTR 122

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 123 FKILVDELRL 132



 Score = 54.8 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 41  CEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKM---IAGARA 95
            +     +  +ID +  G     F ++ R         +  L    + + +         
Sbjct: 195 LQNAESYDLFIIDLNF-GGDGLRFCSNFRSNNNTRYTPILVL--LDESDDIGILSRAFEI 251

Query: 96  GANSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129
           G + +++ P +   L        + ++ +D  + 
Sbjct: 252 GISDYIMAPVDSNELLARTNVQVKRKRYQDALRM 285


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 9/136 (6%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+   ++R+     F    + V EA +   A E  E+ +  + +V+D  M  +
Sbjct: 1   MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFER-VSVDLIVLDIMMPEM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    +DV +  +    + E  + G   GA+ ++ KP +   L      L
Sbjct: 60  DGWSVCRRIREK---SDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANAL 116

Query: 118 PQMQKSK--DENQFLD 131
            +  +     E + L 
Sbjct: 117 MKRTERTVGREAELLQ 132


>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +        G+ VF+A +  +  E   KE + + +++D  M G+   
Sbjct: 5   NILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEV-HLVLLDIMMPGMNGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  L  +      I G   GA+ +++KPFN   L   ++   + 
Sbjct: 64  EMCKKIREN---NNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120

Query: 121 QKSKDEN 127
               + N
Sbjct: 121 YTQLNPN 127


>gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 229

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + +++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM--DISSYHLILLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146]
 gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
          Length = 239

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 5   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 122 RQEAMGQNILLA 133


>gi|262408055|ref|ZP_06084603.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|262354863|gb|EEZ03955.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1476

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D +        GAN+++ KPF++E L   + +L   
Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1336 RKLFRERIRQQMENQ 1350


>gi|257440237|ref|ZP_05615992.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii
           A2-165]
 gi|257197271|gb|EEU95555.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii
           A2-165]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G    EA S   A    E++   +  ++D  + G+ 
Sbjct: 1   MVKVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQKPGCDAAILDVMLPGMN 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L  +   +  I G   GA+ ++ KPF+   L   +  L 
Sbjct: 61  GFSLCETIRRTD--QKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALC 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 240

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|119773207|ref|YP_925947.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119765707|gb|ABL98277.1| response regulator receiver modulated diguanylate cyclase
           [Shewanella amazonensis SB2B]
          Length = 305

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD       +         + + EA+S  +  +    E  P+ +++D  M      
Sbjct: 6   TVLVVDDVKTNLMIMGQSLKGL-YQILEASSGAQCLKLARSEPQPDLILLDVVMPDLDGY 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   ++ + ++  +   E    G   GA  ++ KP     +R  +    Q+
Sbjct: 65  EVCRALKSDPATAEIPIIFVTGKDSDEDEQYGLELGAVDYITKPIRPAIVRARVCAHIQL 124

Query: 121 QKSKDENQFLD 131
           ++ +D  Q + 
Sbjct: 125 KQQRDRLQSMA 135


>gi|323493714|ref|ZP_08098834.1| chemotaxis protein CheY [Vibrio brasiliensis LMG 20546]
 gi|323312054|gb|EGA65198.1| chemotaxis protein CheY [Vibrio brasiliensis LMG 20546]
          Length = 119

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    +A          + ++ D +M  + 
Sbjct: 1   MTKILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKV-TSAKFDVVISDVNMPNMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R+ P    + +  L  E   +K   G  AGA  +L+KPFN +TL   ++ + 
Sbjct: 60  GFELVKALREKPQYKFIPILMLTTETSTDKKQQGKSAGATGWLVKPFNPDTLLKTLKRVI 119


>gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 229

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +LLVD    + ++ +      G+ V  A    EA E  +K    + ++ D  M  +  
Sbjct: 3   NKILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKY-SLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
           +        L  +    ++  +      I     GA+ +++KPF+   L   ++ + +  
Sbjct: 62  YDLISEVQYLDEEQPFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNILRRI 121

Query: 121 QKSKDEN 127
           +K+  EN
Sbjct: 122 EKNSSEN 128


>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +++VD +  +      L    G+ V  A    EA    E+  + + +++D  M  +    
Sbjct: 11  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPV-DLILLDVMMPRLNGLS 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A ++       + V  L  + +    ++G   GA+ ++ KP+N   L   ++   +  ++
Sbjct: 70  ALMKLREKYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRA 128


>gi|254784488|ref|YP_003071916.1| chemotaxis protein CheA [Teredinibacter turnerae T7901]
 gi|237687117|gb|ACR14381.1| putative CheA signal transduction histidine kinase [Teredinibacter
            turnerae T7901]
          Length = 2283

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++++VD S  VRKV        GF V  A    +A    + + +P+ +++D  M  +  
Sbjct: 2159 KTVMVVDDSVTVRKVTTRFLEREGFNVITAKDGVDALRVLQDDDIPDLMLLDIEMPRMDG 2218

Query: 62   FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F     +R       + +  +      +        G N +L KP+  E L  ++ EL +
Sbjct: 2219 FEVAKNIRSSSRLRHLPIIMITSRTGDKHRERAMSLGVNKYLGKPYQEELLLSSIAELLE 2278

Query: 120  MQKSK 124
              K++
Sbjct: 2279 EAKAR 2283


>gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional
           regulatory protein phoB [Deinococcus deserti VCD115]
 gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon
           transcriptional regulatory protein phoB [Deinococcus
           deserti VCD115]
          Length = 223

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++ R      G  V EA    EAR         +  V+D  + G  
Sbjct: 1   MARVLIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALL---PRADVAVMDWMLPGAA 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +        G D+ +  L    + E  + G   G + +++KPF+   +   +R L + 
Sbjct: 58  GPVLAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRR 117

Query: 121 QKSKDENQ 128
                + +
Sbjct: 118 VGVHQDVR 125


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +     HL    G+ V  A+      +        + L++D  +  +   
Sbjct: 2   RILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQY-DLLILDRMLSKMSGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +         V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|162453349|ref|YP_001615716.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163931|emb|CAN95236.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56']
          Length = 235

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    ++KV  +     G  V  A    E       +  P+ +++D  +    
Sbjct: 1   MARILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQ-RPDLVLLDLMLPDIP 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++Q      + V  +    D    I G   GA  +++KPF+   L   ++ + 
Sbjct: 60  GTEVCRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVL 119

Query: 119 QMQKSKDENQF 129
           +  KS  + + 
Sbjct: 120 RRAKSSGDGER 130


>gi|222053126|ref|YP_002535488.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562415|gb|ACM18387.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 516

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  + +    D G+    A    E  E  +++   + +++D  M  +  
Sbjct: 4   KKILIVDDEPDIALILKLQLEDAGYRTAIARDGVEGLEAIDRD-RFSLVLLDIKMPRIDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R   L  +V V  +      +  +   + GA  ++ KPF+ E +   +    Q+ 
Sbjct: 63  LQMLERVQNLHPEVAVVMMTAHGSEDIAVEAMKNGALDYIAKPFSTEDVLQKVERAIQLN 122

Query: 122 KSKDENQFLD 131
           K+K +N  L 
Sbjct: 123 KAKRDNIRLQ 132


>gi|95929326|ref|ZP_01312069.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
 gi|95134442|gb|EAT16098.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfuromonas acetoxidans DSM 684]
          Length = 449

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+LLVD    +R+V      + G+ V  A S  EA     +   P  +V D  MEG+  +
Sbjct: 4   SVLLVDDDASMRRVIEFTLQEAGYQVLTAASGEEALPLF-RHHQPALVVTDVRMEGMSGY 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               + +       V  +      E+ +   ++GA  +L KPF+ E LR A+    + + 
Sbjct: 63  QVLEKVLAESPATLVIIITAYSTVEQAVGAMKSGAYDYLTKPFSGEQLRLAVARAFEYRA 122

Query: 123 SKDENQFLDAI 133
            + EN  L  +
Sbjct: 123 LRRENTQLHEV 133


>gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|319640208|ref|ZP_07994934.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388195|gb|EFV69048.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1403

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1150 TILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1207

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1208 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1267

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1268 RKRFQQ 1273


>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
 gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
          Length = 241

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+    +           G+          A         P+ +++D  +  +   
Sbjct: 13  SVLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIA-ASYKPDLILMDIMLPVMDGL 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       V V  L    D    + G  AGA+ ++ KPF+   L    + L +  +
Sbjct: 72  EATKRITAARP-VPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVE 130

Query: 123 SKD 125
              
Sbjct: 131 RAK 133


>gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 237

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    V  V        G+         +A E   ++  P+ +V+D  + G+  
Sbjct: 3   TRVLVVDDDPTVSNVVSAYLTKAGYDARVVPDGVKAVEVW-QQWKPSVVVLDVMLPGLSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         V  L    + E  + G   GA+ +++KPF+   L   ++ L + +
Sbjct: 62  LEVLRRLRSADDGAAVIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALLRRE 121

Query: 122 KSKD 125
           +   
Sbjct: 122 ERLA 125


>gi|90418271|ref|ZP_01226183.1| response regulator receiver, transcriptional regulatory protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337943|gb|EAS51594.1| response regulator receiver, transcriptional regulatory protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 246

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L++D    +R +     ++  F V  A    EAR   E  L  + LV+D  M G    I
Sbjct: 27  ILVIDDDRRIRSLLLRFLSEQQFRVSVAADAAEARRILE-GLDFDLLVVDVMMPGESG-I 84

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             VR +       V  L    + E  I G  AGA+ +L KPF+   L   +  + +   S
Sbjct: 85  ELVRSLRTNRQAPVLMLTARSETEHRIEGLEAGADDYLAKPFDPRELLLRVNNILRR-GS 143

Query: 124 KDENQFLDAI 133
           +   Q L+ I
Sbjct: 144 QAPIQKLEHI 153


>gi|75906872|ref|YP_321168.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75700597|gb|ABA20273.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 387

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+++    VR+    L    GF + EA +     +  ++E +P+ ++ D  M    
Sbjct: 1   MNKILVIEDDIHVRQNILDLLEGEGFNILEAHNGLLGVQLAQEE-IPDLIICDVMMPELD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-EL 117
             E +  +RQ P    + + +L  + D      G   GA+ +++KPF R  L  A+   L
Sbjct: 60  GYEVLKVLRQCPETAIIPLIFLTAKSDKNDFRQGMEMGADDYIIKPFTRAELLAAIACRL 119

Query: 118 PQMQKSKDENQF 129
            +    K ENQ 
Sbjct: 120 EKHITIKQENQR 131


>gi|134299369|ref|YP_001112865.1| two component sigma-54 specific Fis family transcriptional
           regulator [Desulfotomaculum reducens MI-1]
 gi|134052069|gb|ABO50040.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum reducens MI-1]
          Length = 448

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +           G+ V  AT      E    E  P+ +++D  M  +   
Sbjct: 4   RILVIDDEERMCWALERALGHEGYQVITATRGLRGIELA-HETEPSLVILDLKMPDITGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   + +++ V  +      E  I   + GA  ++ KPF  + L+  +++   +  
Sbjct: 63  EVLKKIKSINSNIPVIMITAHGTIETAIEAMKFGATDYITKPFKLDELKVQVKQALHLSN 122

Query: 123 SKDENQFL 130
            +++  FL
Sbjct: 123 LENQVDFL 130


>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 227

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +  + G  V        A     +E  P+ +++D  + G+   
Sbjct: 6   RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAF-RETRPDVVLLDVMLPGIDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L    D   ++ G  +GA+ +++KPF  + L   +R   + 
Sbjct: 65  EVCRRIRAESG---VPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRR 121


>gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 240

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LL+VD    +R++      D G+ V EA    + R    +  + + +V+D  + G   
Sbjct: 3   TTLLVVDDDDEIRELLCDYLADAGYNVLEAADGEQMRAQMARHTV-DLVVLDLMLPGEDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
             +  RQ+     + V  L  +      I G   GA+ +L KPF    L   ++ + +  
Sbjct: 62  L-SLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRP 120

Query: 121 QKSKDENQ 128
           Q+ + + Q
Sbjct: 121 QRLETQAQ 128


>gi|307822332|ref|ZP_07652564.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylobacter tundripaludum SV96]
 gi|307736898|gb|EFO07743.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylobacter tundripaludum SV96]
          Length = 366

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD S     V   L     + V  ATS  +A         P+ +++D  M G+  
Sbjct: 7   QTILIVDDSPENLTVLSELLQPI-YRVRVATSGRKALRIAGTAPCPDLIMLDVMMPGMDG 65

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                H+R  P   D+ V ++      E  + G   GA  ++ KP     +   +    +
Sbjct: 66  YQVFEHLRADPSTQDIPVIFVTAMDSTEAELHGLDVGAVDYITKPIVPPVVLARVHTQLE 125

Query: 120 MQKSKD 125
           +++++D
Sbjct: 126 LKQARD 131


>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 246

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A S   A     ++  P+ +V+D  +  +  F
Sbjct: 21  RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTA-RQFRPDAVVLDVMLPDLDGF 79

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R       V V +L      E+ +AG   G + ++ KPF+ E +   +R L + 
Sbjct: 80  QVLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 137


>gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 240

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + K  R      G+ V  A+    A     +   P+ L++D  +  +   
Sbjct: 19  RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRH-APDLLILDLGLPDMDGV 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R +   + + V  L         +    AGA+ ++ KPF  + L   +R L + 
Sbjct: 78  -DVLRDLRRWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRR 134


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      K+  ++  + G+ V  A       +  E+   P+ +++D  M  +  F
Sbjct: 2   NILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHN-PDLILLDIMMPKIDGF 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V + +L      +  + G + G + +L+KP+    L   +  + + 
Sbjct: 61  DVCRQIRRSSE---VPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117

Query: 121 QKS 123
           + +
Sbjct: 118 RNA 120


>gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 227

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   R  F    F V E  S  E       E  P+  ++D  + G+ 
Sbjct: 1   MK-ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEK-PDIAILDVMLPGMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       + +  L  + +    I G + GA+ ++LKPFN   +   ++ L + 
Sbjct: 59  GFEVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118

Query: 121 QKSKDEN 127
            +  +E 
Sbjct: 119 LEGINEE 125


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LL + + + R          G+ V  A    EA +    E  P+ +++D  M G+  
Sbjct: 1223 RRILLAEDNEVNRVTLSDYLVAQGYEVRVACQGKEALQIA-AEWRPDLIIMDIQMPGLDG 1281

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R         +  +              AGAN +  KP     L   + +  
Sbjct: 1282 LEVIQRLRADAAFAATPIIAVTALAMPGDRERCLSAGANDYFAKPIRLRQLVERIEQFL 1340



 Score = 78.7 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
            L+++ S            +        +    A E  +  L P+ +++D  M      E 
Sbjct: 1096 LIIEDSATTADQLARYLEELQIQPVICSYGKGAVEQVQA-LRPDLILLDVQMPDRSGWEI 1154

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +A +R+ P    V V  + +  + E    G  AGA ++L+KP NR  LR A+ ++
Sbjct: 1155 LADLRRDPDLRQVPVIIVSVVDEPE---RGLAAGAAAYLVKPINRLMLRRALSQI 1206


>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 268

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
 gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL +    + +V        G+ V  A    +A +   ++ + + +++D  M     +
Sbjct: 2   RILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLA-QQTVYDLMILDIMMPVKDGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R         V  L    + +  + G  AGA+ +L KPF+ + L   +R + + 
Sbjct: 61  EALKEIRASGHTNH--VIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRR 118


>gi|189424753|ref|YP_001951930.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
 gi|189421012|gb|ACD95410.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
          Length = 472

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL++D    +R+  R +     F V    +   A E  ++E   + +V D  M G   
Sbjct: 5   KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEP-FDLVVTDLKMPGISG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E +  ++++    D+ V ++      +  +   + GA  ++ KPF  E +   +R   +
Sbjct: 64  MEVLKAIKEIQ--PDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALE 121

Query: 120 MQ 121
            +
Sbjct: 122 QR 123


>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 237

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           LL +    +R          G+ V       EA     K   P+ LV+D  M G+     
Sbjct: 2   LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTP-PDVLVLDVMMPGIDGLQV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R    G    +  L   V+ +  IAG  AGA+ +++KPF+ E +   +R L + 
Sbjct: 61  CRVLRA--EGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116


>gi|294777617|ref|ZP_06743068.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
 gi|294448685|gb|EFG17234.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
            PC510]
          Length = 1408

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|156975066|ref|YP_001445973.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156526660|gb|ABU71746.1| hypothetical protein VIBHAR_02792 [Vibrio harveyi ATCC BAA-1116]
          Length = 225

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
 gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
          Length = 238

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD    +R++     +  G+ V  A            E   + +V+D  + G   
Sbjct: 6   TSILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDS-MRRTLSEARVDLIVLDVMLPGDDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    R++   + V +  L    D    + G   GA+ +L KPF+   L+  ++ L + 
Sbjct: 65  FTLC-REIREHSQVPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRR 122


>gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 220

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ +    +  V      + G+ V  A +  EA  F +KE   + +++D  M  + 
Sbjct: 1   MEKILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKE-AFDLIIMDIMMPSMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     +   +  +    +    + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GYTLTELIRS---TSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLL 116

Query: 119 QMQKSKD 125
           +    K+
Sbjct: 117 RRSNQKE 123


>gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 242

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+LL++    +R+  R      G+ + EA +  E         +P+ +++D  +  +
Sbjct: 1   MKPSILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFA-RVPDLILLDLGLPDM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  ++Q+   + V V  L       + I    AGA+ +L KPF    L   +R + +
Sbjct: 60  DG-IDIIKQIREWSQVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|320107338|ref|YP_004182928.1| Fis family two component sigma54 specific transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925859|gb|ADV82934.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Terriglobus saanensis SP1PR4]
          Length = 468

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-GVL 60
             +L+VD    +R+V +    + G+ V  A+   EA     +E  P  ++ D  M    L
Sbjct: 4   KHILVVDDDSSLRRVMKMQLEEAGYEVSLASDGEEAWIKL-QETEPYLVITDLRMPTTGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +     G    V  +      E  +   + GA  ++ KP + + L   +    + 
Sbjct: 63  ELLRCI--TKEGLQTTVIVITAFGTVETAVEAMKLGAYDYVTKPVDFDALLVVVHRAMER 120

Query: 121 QKSKDENQFLDA 132
           Q   +E + L +
Sbjct: 121 QNLLEEVRNLRS 132


>gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
 gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
          Length = 228

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L V+    + +    L     + V  A       ++     + + LV+D  +  +   
Sbjct: 2   RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYA-ASGVYDLLVLDIMLPKIDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         +  L  + + +  + G  AGA+ +L KPF  + L   +R L + + 
Sbjct: 61  TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120

Query: 123 SKDENQFLD 131
              +   L 
Sbjct: 121 LDYQEDQLA 129


>gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 236

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+++    VR+         G+ V    +    RE        + +++D  + G    
Sbjct: 5   RLLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLPGRDGF 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+   G    V  L    D E  + G   GA+ ++ KPF  E L   +  + + 
Sbjct: 65  EVLRELRE-EDGVMTPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRR 123

Query: 121 QKSKDENQ 128
            K + + +
Sbjct: 124 AKRRPQPE 131


>gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
           29799]
 gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+  + +R +      D G+    A +  EA E  E +   + +++D  M  + 
Sbjct: 1   MFRILVVEDDNGIRMLMEDALADAGYEPVLACNGLEALEVLESKH-IDLIILDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +    G D+ V  +  +        G   GA+ +++KPF  E +   +  L + 
Sbjct: 60  GYELLRQIRESGMDMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLRR 119

Query: 121 QKSKDENQF 129
            K   E + 
Sbjct: 120 AKILTERKL 128


>gi|153954095|ref|YP_001394860.1| KdpE [Clostridium kluyveri DSM 555]
 gi|146346976|gb|EDK33512.1| KdpE [Clostridium kluyveri DSM 555]
          Length = 238

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESME 57
           M+   +L+V+    +RK+        G+    A +      E   ++  P+ +++D  + 
Sbjct: 1   MNKPLILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQ--PDIIILDLGLP 58

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +      ++++   ++V +  +    +    I    AGA+ +L KPF+ E L   +R  
Sbjct: 59  DMDGV-EIIKKVRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVS 117

Query: 118 PQMQK 122
            +  +
Sbjct: 118 LRRIR 122


>gi|120601068|ref|YP_965468.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Desulfovibrio vulgaris DP4]
 gi|120561297|gb|ABM27041.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris DP4]
          Length = 459

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD     R + R +   +G+   EA     A E   +E   + +++D  M  +   
Sbjct: 5   TVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKV-REKARDAVLMDVRMARMGGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R +     V V  +      E  +   R GA  +L KP + + LR  +       +
Sbjct: 64  EALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTR 123

Query: 123 SKDENQFLDA 132
              EN+ L +
Sbjct: 124 LVSENRELKS 133


>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  HVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|317489938|ref|ZP_07948430.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325829806|ref|ZP_08163264.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|316910936|gb|EFV32553.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487973|gb|EGC90410.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 234

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + ++         + V  A +     E  E+   P+ +++D  M  +  F
Sbjct: 4   TVLIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLER-KSPSVILVDLMMPEMNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +++  L ++  +  +         + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 63  -DFIKEARLVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRR 119


>gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
 gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti AK83]
          Length = 307

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    ++ + P+ +++D  M G+  F 
Sbjct: 11  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V ++    + E ++    AG   +L KP N + LR  +R      
Sbjct: 70  TCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 130 RSAQSARVALDA 141


>gi|294495053|ref|YP_003541546.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
 gi|292666052|gb|ADE35901.1| response regulator receiver protein [Methanohalophilus mahii DSM
           5219]
          Length = 355

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +  + +    D  +    A +  +A E   +E +P+ +++D  M  +   
Sbjct: 227 NILIVDDEPDIPDLLKLSLKDEPYDFLVAYNGKDAIEIA-REKIPDLILLDIMMPDMDGY 285

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +++     D+ +  +  +   +  + G   G + ++ KPF++  +   ++ + + 
Sbjct: 286 EVVETLKKERDTRDIAIIMITAKTKVDDKLKGMELGIDDYISKPFDKREVNARIKMVMKR 345


>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 235

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +  +      + G+ V +  +  +A +  E + L +  ++D  +  +  F 
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGFR 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+        +  L  +V+    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 64  ICQKIREQYYY---PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119


>gi|260576146|ref|ZP_05844139.1| response regulator receiver modulated serine phosphatase
           [Rhodobacter sp. SW2]
 gi|259021626|gb|EEW24929.1| response regulator receiver modulated serine phosphatase
           [Rhodobacter sp. SW2]
          Length = 422

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S   RK+   L   +G+ V EA S  EA   C +E   + ++ D  M G+  
Sbjct: 21  RHVLVVDDSKAQRKILSMLLLRWGYRVTEAGSGEEALALC-QETSFDIILSDWMMPGMTG 79

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
             F    R +P     +   L  + +  ++  G   GA+ FL KP + + LR  +R    
Sbjct: 80  VEFCRSFRGLPREGYGYFILLTSKSEKTEVADGLDGGADDFLTKPVSADELRARLRAGER 139

Query: 117 LPQMQ-KSKDENQF 129
           + +MQ +   +NQ 
Sbjct: 140 ILRMQCELVKKNQL 153


>gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1200

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+ D              ++   V  A    EA +  ++    + +++D  M  +  
Sbjct: 1078 KTVLIADDDVRNIFSLSKSLENYKMNVLTALDGKEALQKLQENPSVDVVLLDMMMPQMDG 1137

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+ P   ++ V  +  +           AGA+ ++ KP + + L   +R   
Sbjct: 1138 YETAKRIRENPQWRNLPVIAVTAKAMTGDREKCINAGASDYITKPVDIDQLMSLLRVWL 1196



 Score = 80.6 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L+V+      K         G+    +    E  E       P  +++D  +     
Sbjct: 809 KTILIVEDDTFFAKSLLDYTRKQGYKGIVSVRGDEGLELART-FKPMGILLDIQLPVLSG 867

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            E +  ++  P    + V+ +             + GA  F+ KP   E +    R++
Sbjct: 868 WEVMDQLKNDPETRHIPVHIMSSH---RMKNESLQKGAIDFIDKPVAIEKMDEIFRKI 922



 Score = 57.9 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 10/104 (9%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ + +  K   +    F       + + E  +      + + +++D  +     
Sbjct: 931  KKVLIVEDNSMHAKALAYFLGTFEIHSELKSDIHEGIQALSGNEV-DCVILDMGIPDKKA 989

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103
             + +   ++ P    + +     +          +  A+S ++K
Sbjct: 990  YDMLEEAKKNPGFEHIPIIIFTGKSLSMTEELRIKQYADSIIVK 1033


>gi|220909137|ref|YP_002484448.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865748|gb|ACL46087.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1954

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +       V+ A +  E  +  + E   + +++D  M  +  
Sbjct: 1834 KKVLIVDDDMRNIFALTSILEQQQMQVYYAENGREGIQKLQSEPEIDIVLMDIMMPEMDG 1893

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ P    + +  +  +           AGA+ ++ KP   E L   +R   
Sbjct: 1894 YDTMRAIRQQPHFAQLPIVAITAKAMQGDREKCLAAGASDYIAKPIETEQLFSLLRVWL 1952



 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++      ++  +L    GF    A          +K   P+ +++D  + G+  
Sbjct: 1566 RSLLIIEDDPNFARILVNLARQQGFKALVALRGNTGLALAQK-YHPSAIMLDIFLPGLDG 1624

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               +  ++  P    + V+ L +    E+     + GA ++L KP   E L  A+  L
Sbjct: 1625 WTVLDRLKHNPETRHIPVHILSIN---EERQRSLKQGAIAYLQKPIASEDLLNALSRL 1679



 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD+  + R     L       +   +S   A E  E +   + LV++  +  +    
Sbjct: 1690 LLIVDADELQRLSLMDLLAGNDLEIETVSSGTAALERLESKH-FDCLVLNLVLPDMNGLA 1748

Query: 62   FIAHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +RQ      + +     +    E+                         +R    +
Sbjct: 1749 LIERLRQESQQQHLPIVIYTGQGLTVEEAAQ-------------------LNRLRNSLMI 1789

Query: 121  QKSKDENQFLDA 132
            ++++   Q    
Sbjct: 1790 REARSPEQLFAE 1801


>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 240

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A+    A +     L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAA-STLRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130

Query: 122 KSKD------ENQFL 130
                     EN+ L
Sbjct: 131 DRAKVIAKNSENEKL 145


>gi|17231251|ref|NP_487799.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132893|dbj|BAB75458.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 396

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D   +VR V +    + G+      +  E     E  L P  ++ D  M    
Sbjct: 1   MVKILVIDDDPVVRTVLKRTLENQGYETTVVNNGKEGIIQAEL-LRPALIICDWVMSPLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            LE    ++  P     F   L  +     + +  + G  AGA+ F+ KP     L+  +
Sbjct: 60  GLEVCRQIKANPELATSFFILLTAKGAAPGEEKDRVKGLDAGADEFISKPIEMIELKARV 119

Query: 115 RELPQMQKSKDENQ 128
           R   ++ +   + Q
Sbjct: 120 RAGLRLHQLNQDLQ 133


>gi|86147760|ref|ZP_01066067.1| putaive two-component response regulator [Vibrio sp. MED222]
 gi|85834398|gb|EAQ52549.1| putaive two-component response regulator [Vibrio sp. MED222]
          Length = 225

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  V    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAL-ENSFDIIILDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  L      + M+ G   GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTVCNKLRDQGNATPILMLTALDSRDDMLKGFEHGADDYLTKPFDLDILEARMNALVRR 119

Query: 121 QKSK 124
            + K
Sbjct: 120 YRGK 123


>gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 782

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLV+ + + + V   L    G  V  A +   A E   +    + +++D  M  +   
Sbjct: 656 NILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRALEAL-QNKTYDLVLMDCQMPVMDGY 714

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                +RQ P    + V  +   V          +G N ++ KP+NR+ LR  +  
Sbjct: 715 EATRAIRQNPQWQTLPVIAVTANVMQGDREDCLASGMNDYITKPYNRDELRAVIAR 770


>gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
 gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum
           AIU301]
          Length = 239

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R++         F V       EA            +V+D  + G  
Sbjct: 4   MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREA-RRAYLNGHYQLVVLDLMLPGES 62

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F   +R     + V +  L    +    I G   GA+ ++ KPFN   L   +R + 
Sbjct: 63  GIDFARWLR---GESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|298385504|ref|ZP_06995062.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
 gi|298261645|gb|EFI04511.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
          Length = 231

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +  + +    + GF +  A+   E       EL P+ LV D  M  +  F
Sbjct: 7   TVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFF-ELRPDVLVADVMMPKMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 66  EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALM 121


>gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 230

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +  +      G+ V  AT+  EA +    +  P+ +++D  +  +   
Sbjct: 5   RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQS-PDIILLDLGLPDMDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   +   +  L       + IA    GA+ ++ KPF    L   +R   +   
Sbjct: 63  KDVIRELRGWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAA 122

Query: 123 SKDENQ 128
            +   Q
Sbjct: 123 QQASEQ 128


>gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 247

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  +     +  G+         E      +   P+ +++D  + G    E
Sbjct: 23  ILVVEDEPKMAALLIDYLHAAGYRADRLADGRE-VAAFVRGRQPDLVLLDIMLPGRDGFE 81

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK-PFNRETLRFAMRELPQM 120
               +R     +DV +  L    D    +AG   GA+ ++ K PF+   +   ++ + + 
Sbjct: 82  VCRELR---GFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILRR 138

Query: 121 QKSKD 125
            +  D
Sbjct: 139 SRRAD 143


>gi|238792322|ref|ZP_04635956.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           intermedia ATCC 29909]
 gi|238728248|gb|EEQ19768.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           intermedia ATCC 29909]
          Length = 309

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I  ++    F+   + V  AT+  +A + C  +  P+ +++D  M G+  F
Sbjct: 12  KILIVDDHPINIQMLYQAFSS-DYHVCMATNGKQALDVCISQH-PDLILLDIEMPGMSGF 69

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++  P   D+ V ++   +D E        GA  F+ KP NR T+R  ++    +
Sbjct: 70  EVCARLKASPDTQDIPVIFVTAHIDEETETRCFSEGAVDFISKPINRNTVRARVKTHLLL 129

Query: 121 QKSKDENQFL 130
           +   D  + L
Sbjct: 130 KAQSDLLRQL 139


>gi|237716942|ref|ZP_04547423.1| LOW QUALITY PROTEIN: two-component system sensor histidine
           kinase/response regulator [Bacteroides sp. D1]
 gi|229442925|gb|EEO48716.1| LOW QUALITY PROTEIN: two-component system sensor histidine
           kinase/response regulator [Bacteroides sp. D1]
          Length = 616

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +R + + +   F +++ EA    EA +  E    P+ ++ D  M  +    
Sbjct: 370 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIE-HNHPDIIISDIVMPNMDGLS 426

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  ++     + + +  +  +   E  I     GA+++++KPF+   +   +  L   Q
Sbjct: 427 LINKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 486

Query: 122 KSKD 125
               
Sbjct: 487 MLLK 490


>gi|298528195|ref|ZP_07015599.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511847|gb|EFI35749.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 366

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +F D    V  A +   A         P+ +++D  M G+  F
Sbjct: 6   RILVVDDDANIVQLIADIFEDE-HEVLFALNGESA-GRIADTTRPDLVLMDVVMPGMDGF 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
              A  ++      + + +L      +    G + GA  ++ KP N   L+  +R     
Sbjct: 64  ETCARFKENQKTAHIPIIFLTSMDCPDDETRGLKLGAVDYITKPINPAVLKQRVRTHLDL 123

Query: 120 ---MQKSKDENQFL 130
               Q+   +N+ L
Sbjct: 124 YQARQRLAAQNKSL 137


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
 gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
          Length = 223

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L++D    + ++    F   G++V+ A    EA +     +LP+ +++D +M  + 
Sbjct: 1   MYKILMIDDERDILEMLALQFQSEGYLVYLANDANEALKQL--SVLPDLILLDINMPEMN 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+     +  + +L   +    MI G   G + ++ KPF+ + L   ++   
Sbjct: 59  GLELCTMIREH---VNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHL 115

Query: 119 QMQKSKDENQF 129
           + +K       
Sbjct: 116 RREKRSSHKSR 126


>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
 gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  133 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    + ++         + V       EA ++ E     + +V+D  M  +   
Sbjct: 2   RILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPY-DAVVLDIMMPVLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G+   V  L  +   E  + G  AGAN +L+KPF  E L   +R L +  K
Sbjct: 61  SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120

Query: 123 SKDE 126
              +
Sbjct: 121 EAPQ 124


>gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 234

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|283836628|ref|ZP_06356369.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291067359|gb|EFE05468.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 1/121 (0%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++L+VD    V  + + + ++  F V    S  EA    E +     +++D  +  +
Sbjct: 1   MKPTILVVDDDVAVCTLLQDVLSEHVFAVTACHSGQEALRCVETQPEIALVLLDMMLPDI 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +   +   +   + V  L        ++ G   GA+ ++ KPFN   L   ++ + +
Sbjct: 61  NGLMVLQQVQKMRPGLPVVMLTGLGSESDVVVGLEMGADDYIGKPFNARVLVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    +           GF V        A E+       + +V+D  + G+ 
Sbjct: 1   MSRILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGS-FDLMVLDIGLPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       + V  L      +  +AG   GA+ ++ KPF  E L   +R   ++
Sbjct: 60  GFTVLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVR--LRL 117

Query: 121 QKSKDEN 127
              + + 
Sbjct: 118 VSDRSQE 124


>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
 gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    ++ V   L  + G+ V  A    E     EK+   + +++D  M  +   
Sbjct: 4   NILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQ-YFSLILLDIMMPKIDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    + E  +      A+ ++ KPF+ + +   +  + + 
Sbjct: 63  AVCEIIRKN---SDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRR 119

Query: 121 QKSKDEN 127
            K K EN
Sbjct: 120 TKEKVEN 126


>gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
 gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 9/128 (7%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   LL+VD    +  +    F+   + V  A    EA +   ++  P+ +++D +M  +
Sbjct: 1   MKQRLLIVDDEPGIVDMMASYFSSQ-YEVLTAYCGNEALQKLARQ--PDLILLDINMPDI 57

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R++       + +L   V+    I G +AGA+ +++KPF+ + L   +   
Sbjct: 58  DGLTLCQKIREL---ITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAH 114

Query: 118 PQMQKSKD 125
            + ++   
Sbjct: 115 LRREQRHR 122


>gi|163849959|ref|YP_001638002.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661564|gb|ABY28931.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 247

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R +  +     G  V  A    +           + +V+D  M G     
Sbjct: 7   VLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQ-MRAFLDADRVDLVVLDVMMPGDDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         V  L    D    I G   GA+ +L+KPF    L   ++ + +  
Sbjct: 66  LCRELRS-GRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|89896561|ref|YP_520048.1| hypothetical protein DSY3815 [Desulfitobacterium hafniense Y51]
 gi|89336009|dbj|BAE85604.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 450

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      K+         ++V  A +  EA E    +  P+ +++D  M  +   
Sbjct: 156 RVLIVDDQLFNLKLLESAL-KEDYIVMTADNGIEALELATGKSQPDIILLDIIMPVMDGY 214

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+MP   D+ V +L    + +      + G   ++ KPF+   ++  +R   + 
Sbjct: 215 EVCIRLREMPETRDIPVIFLSALKNEKNEEYALQLGVVDYITKPFSLPIIKGRLRNHVEQ 274

Query: 121 QKSKDENQ 128
           +K +D  +
Sbjct: 275 KKYRDRQK 282


>gi|84388544|ref|ZP_00991091.1| putative two-component response regulator [Vibrio splendidus 12B01]
 gi|84377093|gb|EAP93964.1| putative two-component response regulator [Vibrio splendidus 12B01]
          Length = 225

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  V    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAL-ENSFDIIILDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  L      + M+ G   GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTVCNKLRDQGNATPILMLTALDSRDDMLKGFEHGADDYLTKPFDLDILEARMNALVRR 119

Query: 121 QKSK 124
            + K
Sbjct: 120 YRGK 123


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    V    +    +  + V       E  +  +     +  ++D  +    
Sbjct: 1   MK-ILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEY-SLAILDVMVPKKD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G+ + V  L      + +++G  AGA+ +L KPF    L   +R L + 
Sbjct: 59  GLTVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRR 118

Query: 121 QK 122
            +
Sbjct: 119 SE 120


>gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 234

 Score =  133 bits (336), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF+V  A     A     + + P+ +V+D  + G+   
Sbjct: 5   TILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALA-RSVKPDLVVLDVMLPGLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   T VFV  L    D    + G   GA+ +L KPF+   L   ++ + +   
Sbjct: 64  EVC-RQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR-- 120

Query: 123 SKDENQFLDAI 133
               N+ + AI
Sbjct: 121 ----NRVIRAI 127


>gi|325300034|ref|YP_004259951.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324319587|gb|ADY37478.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 228

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A S  EA +        N L++D  M  +  F
Sbjct: 5   RILVVDDEDDLCEILKFNLEMEGYKVDTANSAEEALKL--DLTQYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ + ++  +      I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMARMLKANKDTVNIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122

Query: 121 QKSKDENQ 128
             +    +
Sbjct: 123 TANLQRKE 130


>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ +      GF V   T     R+   +E   +  ++D  + G+ 
Sbjct: 1   MSRILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEED-FDMFILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFAICKQIREK---KNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+ D    +R++        G+ VFEA    EA      +   +  +ID  M    
Sbjct: 1   MAAILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNIL-SQRTVHLCIIDVMMPNKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++    D+ +  +  + + E  + G + G + +++KPF+   L   ++ L 
Sbjct: 60  GWELCKEIREL---YDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALL 116

Query: 119 QMQKSKDENQ 128
           +  K    N+
Sbjct: 117 RRYKINTTNK 126


>gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+V+    + ++        G+    A     A E       P+ +++D  +  +  
Sbjct: 3   TSILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVA-QPDLILLDLMLPVLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R     +DV +  L    D    + G   GA+ +++KP++   +   ++ + +  
Sbjct: 62  LEVARRIRAE-SDVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVLRRV 120

Query: 122 K 122
           +
Sbjct: 121 R 121


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +   ++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a]
          Length = 250

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+         G+ V  A    +A +   ++  P+ +V+D  M  +   
Sbjct: 9   RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRD-QPDIVVLDVMMPRIDGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
                +R    G DV V  L         ++G   GA+ +L+KPF  E L
Sbjct: 68  ETCRQLRAR--GDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 115


>gi|163848363|ref|YP_001636407.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526285|ref|YP_002570756.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163669652|gb|ABY36018.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450164|gb|ACM54430.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 527

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R +      D GF+V  A     A      E   + +++D  +      
Sbjct: 221 RILLVDDELDIRVILSQQLTDAGFVVVTAPDATTAL-RLMHEQFFDLVILDRLLPDSDGL 279

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R       + V  L      ++ +   + GA+ +++KP +   L   +R + + 
Sbjct: 280 NVLRTIRSSGTTRLIPVMLLSAVSSLDEKVRSLQLGADDYVVKPCSAAELAARIRSILRR 339

Query: 121 QKSKD 125
            + + 
Sbjct: 340 SERES 344


>gi|300869425|ref|ZP_07114010.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300332555|emb|CBN59208.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 358

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
           M+   +L++D       V   L +D  + +  A S  EA    +    P+ +++D  M  
Sbjct: 1   MNKPSILIIDDEPDNFDVIETLLSDPDYQLHYAASGQEAIASLDT-FNPDLILLDVMMPE 59

Query: 58  -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    ++ M     V +  +        +     AGA+ F+ KP N   LR  +  
Sbjct: 60  TDGIEVCRQIKAMSKWQAVPIVMVTALSSKSDLAYCLTAGADDFITKPVNAIELRARVHS 119

Query: 117 LPQMQKSKDENQFL 130
           + +++   D+ Q L
Sbjct: 120 MLRIKHHYDDLQTL 133


>gi|237736000|ref|ZP_04566481.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421908|gb|EEO36955.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 243

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L++D    + ++ +      G+  +   +  +  E  EK   P+ +++D  +     
Sbjct: 3   KKILVIDDEEHILELLKINLEFSGYDTYAYDTGKDVLEIIEKTN-PDLILLDLMLPEIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R+ P    + +  L  + D    I     GA+ ++ KPF+   L   ++ + +
Sbjct: 62  IEICKRIRRNPKFNKIKLLILSAKSDEIDKILCLEIGADDYITKPFSLRELLARIKAIFR 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 239

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +RK+      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 11  TILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEV-HLVVLDIMMPKVDGI 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 70  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 126


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
            5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
            5692]
          Length = 1316

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ + + ++V + +    G  V  A +   A E    E   + +++D  M G+    
Sbjct: 1088 VLVVEDNLLNQEVAQEILEQAGMAVTLADTGERALELA-AEHAFDVVLMDIQMPGMDGLQ 1146

Query: 63   -IAHVRQMPL------GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                +R+M          ++ V  +              AG + F+ KPF  + L   ++
Sbjct: 1147 TTQELRRMADKTGKHFLQNLPVIAMTGHAMKSDQNRCLAAGMDDFIAKPFRIDQLFATLQ 1206

Query: 116  ELP 118
               
Sbjct: 1207 RWL 1209


>gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acinetobacter calcoaceticus PHEA-2]
          Length = 223

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 2   RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  SVLQVLRQ---FSRIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 118 QQYLQENEL 126


>gi|294507174|ref|YP_003571232.1| phosphate regulon transcriptional regulatory protein phoB
           [Salinibacter ruber M8]
 gi|294343502|emb|CBH24280.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salinibacter ruber M8]
          Length = 253

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+ +    +       F   G+ V  A    +A +        + +++D  +     F
Sbjct: 14  RLLIAEDDPDLGSSLESFFAQHGYEVHHAMEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G D  V  L ++ + E  + G   GA+ ++ KPF+ + L   +  +    +
Sbjct: 74  EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKVLAARVEAVLSRSQ 133

Query: 123 S 123
           S
Sbjct: 134 S 134


>gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae
           T7901]
          Length = 232

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +  + R      GF      +  E  E        + +++D  + G   L
Sbjct: 4   TVLIVEDEAELALLMRDYLLAAGFHCEIIGNGLE-VERWLSTNTADIILLDLMLPGKNGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R       + +  +  +V+    + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  DICRELRTQAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVLRR 122

Query: 121 QKSKDEN 127
            +   E 
Sbjct: 123 VQQPQEQ 129


>gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 235

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+V+    +        N+ G+ VF+A +  E  +  + E   +  ++D  M  
Sbjct: 1   MKLYNVLIVEDEKEICDAIAIYLNNQGYNVFKAHNGIEGLDVIKNET-IHLAIVDIMMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++      D  V  L  + +    I G   GA+ ++ KPFN   L   +    
Sbjct: 60  MDGIQMTMKLRGEF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++   +    GF         +A      E  P+ +++D  + G+   
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAF-HEAKPDLVLLDLMLPGLDGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R       + +  L  + D   ++ G  +GA+ +++KPFN + L   +R   +
Sbjct: 63  QVCDLIRAESG---IPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLR 118


>gi|187736215|ref|YP_001878327.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426267|gb|ACD05546.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ +    +R     +    G+ V        A     +E   +  ++D +M G   F
Sbjct: 7   TILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAV-RERNFDLALLDVAMPGADGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  L    + E  + G + GA+ +++KPF+   L   +  + +   
Sbjct: 66  QVLQVMSEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRRSP 125

Query: 123 SKDENQF 129
            +     
Sbjct: 126 ERPRQLR 132


>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
 gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            + +V+    +  + ++     G+ V       EA E   +E +P+ L++D  + G   +
Sbjct: 6   RITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEA-EIHLQERVPDLLILDWMLPGISGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R  P    + +  L    +  + + G   GA+ +++KPF+   L   +R + + 
Sbjct: 65  ELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLRR 124


>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 873

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+   I ++V   L  + G  V  A    +A +   +    + +++D  M  +  
Sbjct: 752 RRVLLVEDEPINQEVAGELLREVGLEVELAADGLQAVQLVVENDY-DVILMDMQMPEMDG 810

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R++P    V +  +      E       +G N F+ KP N + L   +    
Sbjct: 811 LEATRAIRKLPGRQTVPILAMTANAFAEDRERCMASGMNDFIPKPVNPDVLYATLLRWL 869


>gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 705

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S        E +  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++   ++ ++ R      GF    A +  +   F       + +++D  +    
Sbjct: 1   MRKILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFAL-NREFDLILLDLMLPSKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R      ++ +  +  + D    I G   GA+ +++KPF+   L   +    
Sbjct: 60  GFQLCKEIRSN---KEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHL 116

Query: 119 QM 120
             
Sbjct: 117 SR 118


>gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 235

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    + ++ +      G+ V  A +  EA E   +    +  ++D +M  +  F
Sbjct: 4   TILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELL-QHRTIDLAILDINMPLMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++ +       V  +         I G   GA+ F+ KPFN   +   ++   + 
Sbjct: 63  -ALLKHIRTIHTFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRR 119


>gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 208

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L  +    +R+V        GF V       EA ++ +     + +++D  M G+   
Sbjct: 2   RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDY-DVVILDIMMPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G    V  L         + G  AGA+ +L KPF    L   +R L + 
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118


>gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 224

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M + L+VD  + +           GF     ++  +A ++ +K+ + +  +ID  M G+ 
Sbjct: 1   MTTCLIVDDDYQILHYVSSYLEKEGFKTVTYSNAEDALKYLDKQHV-DIAIIDIMMNGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++       + V  L               G + ++ KPF  + L F ++ + 
Sbjct: 60  GFELCQEIK---DNYTLPVIMLTARDALSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVL 116

Query: 119 QMQKSKDENQF 129
           +  +   EN+ 
Sbjct: 117 RRYQINAENEL 127


>gi|160945860|ref|ZP_02093086.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443591|gb|EDP20596.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
           M21/2]
          Length = 224

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D    +  +  + F   GF V  A +  EA +  EK+  P+ +++D +M G   L
Sbjct: 4   KILIADDESDIVSMLGNFFESKGFRVLPAFNGAEALKQVEKQ--PDIILLDINMPGTDGL 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         + +L   ++    + G   G + +++KPF+   L   +R   + 
Sbjct: 62  EVCKRIR---DHISCPILFLTARIEDTDKVKGFAVGGDDYIVKPFSLVELDARVRAHLRR 118

Query: 121 Q 121
           +
Sbjct: 119 E 119


>gi|24251269|gb|AAN46189.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 411

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+ + + I R V        G  V    S  EA     ++   + L +D  M G    
Sbjct: 174 RLLVAEDNEINRDVLERRLRRLGHDVVCVASGQEALNQLAQQP-FDLLFLDVMMPGLTGF 232

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  ++  P   ++ V  +    D E +I   R GA  +L KPF    L+  +    Q 
Sbjct: 233 EVLQQLKADPTLAELPVLMISALDDLESVIRCLRLGATDYLTKPFEPTLLQTRLETCLQH 292

Query: 121 QKSKDEN 127
           ++ +D  
Sbjct: 293 KRLRDRE 299


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKIREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|328885443|emb|CCA58682.1| Two-component hybrid sensor and regulator [Streptomyces venezuelae
            ATCC 10712]
          Length = 1785

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1665 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1724

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M E  +
Sbjct: 1725 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMEEWMR 1783


>gi|320105204|ref|YP_004180795.1| CheA signal transduction histidine kinase [Isosphaera pallida ATCC
            43644]
 gi|319752486|gb|ADV64246.1| CheA signal transduction histidine kinase [Isosphaera pallida ATCC
            43644]
          Length = 1625

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61
            ++L+VD S  VR+   +L  D G+    A    +A E  ++   +P+ +++D  M  +  
Sbjct: 1499 TILVVDDSPTVRRTVSNLIKDQGWTPILAKDGLDAIETLQRSPVIPDLVLLDIEMPRMDG 1558

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + ++R  P   ++ +  +      +        GA  +++KP++ E +   +R L  
Sbjct: 1559 YEVLGNLRAQPSFRNLPIVMVTSRAGQKHRRKAMDLGATDYVIKPYDDEEMLARIRRLVG 1618

Query: 120  MQKS 123
             +++
Sbjct: 1619 NRRA 1622


>gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++ +VD    + ++        G+ V    +     +  EK   P+ +++D  +      
Sbjct: 5   TVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSE-PDIVILDIMLPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V +  L  + +    + G   G++ ++ KPF+   L   ++++ + 
Sbjct: 64  EICKRIRKNSE---VPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRR 120


>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 223

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 2   RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 118 QQYLQENEL 126


>gi|295677877|ref|YP_003606401.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437720|gb|ADG16890.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 246

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   ++ + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLVRIQTVLRRR 121


>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +    G+     +    A     ++  P+ +++D  + G   L
Sbjct: 17  RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAF-QQTRPDIVLLDLMLPGRNGL 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R     + V +  L  + D   ++ G  AGA+ ++ KPF    L   +R   + 
Sbjct: 76  QICQDIRTQ---STVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132

Query: 121 QKS-KDEN 127
            ++ + EN
Sbjct: 133 GETGQAEN 140


>gi|298530357|ref|ZP_07017759.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509731|gb|EFI33635.1| response regulator receiver protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 388

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+++D      KV + +    G+ V    S   A +  +K   P+ +++D  M  +  
Sbjct: 7   KTLMIIDDYPENLKVLQEMLEVSGYRVVAFPSGPLALKAADKNP-PDLILLDIKMPEMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      ++ V ++      +  I     G   ++ KPF+ E +   +     
Sbjct: 66  FEVCRRLKAHDKLKEIPVIFISALDQVQDKIRAFSQGGADYITKPFHPEEVHARVTSHLA 125

Query: 120 MQKSKD 125
            +  +D
Sbjct: 126 SKSLQD 131


>gi|298490636|ref|YP_003720813.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298232554|gb|ADI63690.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 317

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 61/129 (47%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD   +  ++   + ++ G+    A++  +A +   +   P+ +++D  M  +    
Sbjct: 11  ILVVDDVKLNLQIVAKILDNVGYECSFASNGYQALKRV-RSARPDLILLDLMMPEMDGLE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P  +++ + ++    + E ++   + GA  ++ KPF+   L   +R   +++
Sbjct: 70  VCEKIQANPELSEIPIIFISASQEQEHLLQAFQKGAVDYVAKPFHSAELLARVRMHLELK 129

Query: 122 KSKDENQFL 130
            S+ + + L
Sbjct: 130 YSRQKLKNL 138


>gi|223940723|ref|ZP_03632561.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223890614|gb|EEF57137.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 231

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L++D    +R++ R      G+ VFEA +          +  P  +++D  +  +    
Sbjct: 10  VLVIDDEVQIRRLLRVSLEANGYRVFEAANGQTGLVEA-AQRRPEVVLLDLGLPDMDGVT 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             ++++   + V V  L +    +  +A    GA+ +L KPF    L   +R   +  +S
Sbjct: 69  V-LKRLREWSQVPVVILSVRDREDDKVAALDHGADDYLTKPFGTAELLARLRVALRHSQS 127

Query: 124 KDENQFLDA 132
             ++    +
Sbjct: 128 APDDALFKS 136


>gi|29653715|ref|NP_819407.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 493]
 gi|153207221|ref|ZP_01945985.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154705969|ref|YP_001425049.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii Dugway 5J108-111]
 gi|161830581|ref|YP_001596307.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 331]
 gi|165918696|ref|ZP_02218782.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 334]
 gi|212213134|ref|YP_002304070.1| PhoB [Coxiella burnetii CbuG_Q212]
 gi|212218191|ref|YP_002304978.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii CbuK_Q154]
 gi|29540978|gb|AAO89921.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii RSA 493]
 gi|120576709|gb|EAX33333.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154355255|gb|ABS76717.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii Dugway 5J108-111]
 gi|161762448|gb|ABX78090.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 331]
 gi|165917631|gb|EDR36235.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella
           burnetii RSA 334]
 gi|212011544|gb|ACJ18925.1| PhoB [Coxiella burnetii CbuG_Q212]
 gi|212012453|gb|ACJ19833.1| phosphate regulon transcriptional regulatory protein [Coxiella
           burnetii CbuK_Q154]
          Length = 248

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+++    +R + R    D  F + +A    +A +    + +P+ +++D  + G   +
Sbjct: 20  KLLIIEDEIAIRDMVRFSLPDE-FELLDAEDTAKAIKQLAAQ-IPDLILLDWMLPGKSGI 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           EFI  ++Q  +  D+ +  L  + + E  + G  +GA+ ++ KPF+ + L   +R + + 
Sbjct: 78  EFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFSPDELIARIRAILRR 137

Query: 121 QKSKDENQFLD 131
                 NQ + 
Sbjct: 138 GPLISSNQEIK 148


>gi|78046340|ref|YP_362515.1| OmpR family two-component response regulator [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034770|emb|CAJ22415.1| two-component system regulatory protein, OmpR family [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 259

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 28  VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146

Query: 124 KDEN 127
            +E 
Sbjct: 147 SNEQ 150


>gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           sphaericus C3-41]
 gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           sphaericus C3-41]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +       +    A     A +     + P+  ++D  +  +  
Sbjct: 3   KRILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAIT-MKPDVYILDLGLPDIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + ++   T   +  +    +    I    AGA+ ++ KPF+ E L   +R   + 
Sbjct: 62  V-ELITKIRSWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRR 119


>gi|119471376|ref|ZP_01613848.1| chemotaxis response regulator [Alteromonadales bacterium TW-7]
 gi|119445652|gb|EAW26936.1| chemotaxis response regulator [Alteromonadales bacterium TW-7]
          Length = 120

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA    EA    +++   + ++ D +M  + 
Sbjct: 1   MKKILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQG-FDAVISDVNMPIMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R +P      +  L  E   EK + G  AGA  +++KPFN E L   ++++ 
Sbjct: 60  GITLIRELRTLPDYKFTPLLMLTTESGLEKKVEGKAAGATGWIVKPFNPEQLLAVIKKVI 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|311280422|ref|YP_003942653.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749617|gb|ADO49369.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 225

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R++ R      G  V EA ++            P+ +++D  +    
Sbjct: 1   MINVLIIEDEQAIRRLLRSALEGDGLRVHEAETLQRGL-LEAATRKPDLVILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R     + V +  L    +    I    AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDFRQWSQVPIIVLSARAEETDKITALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKDENQFL 130
               ++NQ L
Sbjct: 119 YGGSEQNQPL 128


>gi|317048083|ref|YP_004115731.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316949700|gb|ADU69175.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 246

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R++        G+    A +  E           + +V+D  M G   L 
Sbjct: 7   ILVVDDDRDIRELITDYLMKSGYRATGAANGRE-MRAVLAANAVDLVVLDIMMPGDDGLT 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P   ++ +  L    +    I G   GA+ +L+KPF    L   ++ + +  
Sbjct: 66  LCRQLRSDPQ-RNLPILMLTARSEDSDRILGLEMGADDYLIKPFVARELLARIKAILRRT 124

Query: 122 KSKDEN 127
           ++   N
Sbjct: 125 RALPPN 130


>gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 1   MD-----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
           M      S+LLV+    +++  +      G+ V    +   A +   K    + +++D  
Sbjct: 1   MKEATKASILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAV-KNEYFDLIILDIM 59

Query: 56  MEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +  +       ++R      +V + +L  +      + G + G + ++ KPFN E L   
Sbjct: 60  LPEMDGIAVCENIRIQ--NNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLR 117

Query: 114 MRELP-QMQKSKDEN 127
           + +L  + ++ +D++
Sbjct: 118 VEKLIVKNKRIQDKD 132


>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATY-DLIVLDIMIPGINGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K         G+            +   +    + +++D  +  + 
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDY-DVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   +     +  +         ++G   GA+ +L+KPF  E L   +R L + 
Sbjct: 60  GLEVARRLREV-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118

Query: 121 QKSKDE 126
              + E
Sbjct: 119 ITIETE 124


>gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC-EAREFCEKELLPNYLVIDESMEGV 59
           M+ +LLV+    +           G++V  A +   +A     K+ + + +++D S++  
Sbjct: 1   MNRILLVEDDPFIVNNLTEFLQSEGYIV-SAVNGQKDAL-MLLKQEVYDIILLDISLKDG 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     ++ M    D  V ++    D   ++AG   GA+ ++ KPF    L   ++ +
Sbjct: 59  NGFAVCKAIKSMG---DTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSV 115

Query: 118 PQM 120
            + 
Sbjct: 116 LRR 118


>gi|83646967|ref|YP_435402.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83635010|gb|ABC30977.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 569

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+VD      ++   +F   G  V E  + C   +       P+ +++D  M G    
Sbjct: 8   RLLIVDDEQRNTRLLADIFRAEGCDVHELNNSCNTLKTV-ANYEPDLIILDVMMPGKNGF 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    D +  ++G  AGA  ++ KPFNR  L   +  L ++
Sbjct: 67  ELTREIKSHEAWKHIPIILLTALADRDSCVSGLEAGAEDYVSKPFNRRELCARVNNLLKL 126

Query: 121 QKSKD-ENQFL 130
           +K  D +NQ +
Sbjct: 127 KKLHDFQNQNI 137


>gi|332533257|ref|ZP_08409124.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037336|gb|EGI73791.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 120

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA    EA    +++   + ++ D +M  + 
Sbjct: 1   MKRILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQD-FDAVISDVNMPIMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R +P      +  L  E   EK + G  AGA  +++KPFN + L   ++++ 
Sbjct: 60  GITLIRELRTLPSYKFTPLLMLTTESGLEKKVEGKAAGATGWIVKPFNPDQLLAVIKKVI 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|308186053|ref|YP_003930184.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           sphR [Pantoea vagans C9-1]
 gi|308056563|gb|ADO08735.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           sphR [Pantoea vagans C9-1]
          Length = 224

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R    +    VF+A ++            P+ +++D  +    
Sbjct: 1   MTTVLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGL-IEAATRKPDLVILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   + + V  L    D +  IA   AGA+ +L KPF    L   +R   + 
Sbjct: 60  G-TDFIRDLRQWSAIPVIVLSARSDEQDKIAALDAGADDYLTKPFGVGELLARVRVALRR 118

Query: 121 QKSKDENQFLD 131
              +     + 
Sbjct: 119 HGGQQPEARIQ 129


>gi|300855893|ref|YP_003780877.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300436008|gb|ADK15775.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 228

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A +  +A          +  +ID S+    
Sbjct: 1   MKQIFLVEDDKEIAKNLVLLLRSEGFTVTHAPTRSDALAML-AGNKFDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++++    DV V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTVCTEIKEI---QDVPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRTAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|294647906|ref|ZP_06725458.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294806302|ref|ZP_06765149.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292636814|gb|EFF55280.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
            2a]
 gi|294446558|gb|EFG15178.1| response regulator receiver domain protein [Bacteroides xylanisolvens
            SD CC 1b]
 gi|295085623|emb|CBK67146.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1321

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +  +        +   + V  AT+  EA +  +     N ++ D  M  +  F 
Sbjct: 1073 VLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALQVLDGN-YVNLVISDVVMPVMDGFE 1130

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  + + +  I G   GA++++ KPF+ E L+     L Q +
Sbjct: 1131 LCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQNR 1190

Query: 122  KSKDE 126
            +   +
Sbjct: 1191 EKLRQ 1195


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    +           G+ V       E       E   + +++D  + G+   
Sbjct: 2   RLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRA-SEGAYDLVILDIMLPGMNGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R    G DV +  L  +        G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  RVCAALRA--AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118

Query: 121 QKS 123
           + +
Sbjct: 119 RHA 121


>gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 231

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    + ++      + GF V        A  + EKE + +  V+D  +  +  F
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++Q+       V  L  + +    I G   GA+ ++ KPFN   +   ++   +  +
Sbjct: 63  -QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121

Query: 123 SKDE 126
             ++
Sbjct: 122 RYNQ 125


>gi|237717182|ref|ZP_04547663.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405950|ref|ZP_06082500.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229443165|gb|EEO48956.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262356825|gb|EEZ05915.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1342

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+ +  +        +   + V  AT+  EA +  +     N ++ D  M  +  F 
Sbjct: 1094 VLVVEDNPDMLTFVVRQLSR-DYTVLTATNGAEALQVLDGN-YVNLVISDVVMPVMDGFE 1151

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + V  L  + + +  I G   GA++++ KPF+ E L+     L Q +
Sbjct: 1152 LCKTIKSDLNYSHIPVILLTAKTNIQSKIEGMELGADAYIEKPFSVEYLQACASNLIQNR 1211

Query: 122  KSKDE 126
            +   +
Sbjct: 1212 EKLRQ 1216


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++         F V+ A S  EA     +E+ P+  ++D  M G+  F
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIA-REVNPDAYILDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   ++ I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 67  ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126

Query: 123 SKDE 126
           + +E
Sbjct: 127 AAEE 130


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      + GF V  A +  +A      E   +  V+D  +  V  F
Sbjct: 46  RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADA-ARLILEREFDLAVLDIMLPDVDGF 104

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R +       V  L         I G   GA+ +++KPF    L    +   + 
Sbjct: 105 -ELLRTIRTERTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRR 161


>gi|170077968|ref|YP_001734606.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885637|gb|ACA99350.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 372

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S     + + +  D    +    +  +A E   ++   + +++D  M  +  F
Sbjct: 9   RVLVVDDSPDNLLLIQSILEDEDLDLVTVNNGQKALELVAQQP-FHLILLDVMMPHMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H+R  P    + +  +        +  G   GA+ F+ KP   + L   +R L + 
Sbjct: 68  EITRHIRNDPDIPYIPILLITAHAQPS-VALGLDIGADDFIRKPVEIDELIARVRSLLRF 126

Query: 121 QKSKDENQFL 130
           + + DE   +
Sbjct: 127 KHTVDEKNMI 136


>gi|126348064|emb|CAJ89784.1| putative two-component system sensory histidine kinase [Streptomyces
            ambofaciens ATCC 23877]
          Length = 1331

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +     E          +++D  M  +  
Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIETLIDHPEVALVLMDVMMPEMDG 1270

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R++P   ++ +  +  +           +GA+ ++ KP + + L   +R   
Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329



 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 11/78 (14%)

Query: 48   NYLVIDESMEGVLE---FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA----GANSF 100
            + +V++  M    E   F+  +R       V V           +    R+    GA  F
Sbjct: 1106 HCVVLELGMRD-DEASRFLRALRGDSALASVPVLVHSGHRADAALEESLRSGTQDGALEF 1164

Query: 101  LLKPFNRETLRFAMRELP 118
            L    + + LR  +    
Sbjct: 1165 LS---SLDELRERIALHL 1179


>gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++   ++ +    L     F V    +  +      K+   + +++D  +  + 
Sbjct: 1   MTKILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQS-FDLVLLDLGLPMMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q+   T V V  +      E  + G   GA+ +L+KP+  + L   +  L + 
Sbjct: 60  GM-QVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRR 118

Query: 121 QKSKD 125
             SKD
Sbjct: 119 TNSKD 123


>gi|85712473|ref|ZP_01043522.1| Response regulator of sigma subunit, serine phosphatase (CheY-RsbU)
           [Idiomarina baltica OS145]
 gi|85693751|gb|EAQ31700.1| Response regulator of sigma subunit, serine phosphatase (CheY-RsbU)
           [Idiomarina baltica OS145]
          Length = 560

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     + +   L   FG  V  A++  EA    E ++ P  +++D  M  + 
Sbjct: 1   MK-ILVVDDQKANQIMLTGLLTSFGHEVVCASNGREALGLFE-QVQPQLILLDVMMPEMD 58

Query: 61  EFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++ M     + + +L      + ++   + G + FL  PF    L+  +    
Sbjct: 59  GFETAPRLKAMSGNVHLPIIFLTALDSQDTLLECLKVGGDDFLSIPFEPVVLQAKVNAHA 118

Query: 119 QMQKSK----DENQFLD 131
           ++++      ++N+ L 
Sbjct: 119 RVRELSYSIVEKNRALA 135


>gi|113970242|ref|YP_734035.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113884926|gb|ABI38978.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 4/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   + R          G  V  A +  E  +   +  +P+ +++D  M  + 
Sbjct: 1   MSRILLVDDDPLFRVWLTDALKTQGHEVECAINGIEGLKRI-RSFMPDIIMLDLIMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F              +  L    + E  I     GA+ FL KPF+ + L   +  L + 
Sbjct: 60  GFSLL---EARDCMTPIMMLSARDNEEDRIRCYELGADDFLTKPFSIKELLVRLHALERR 116

Query: 121 QKSKDENQF 129
             S+   Q 
Sbjct: 117 LISRPPEQM 125


>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1166

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ + I +++   L    G  V  A S   A +    E   + +++D  M  +   
Sbjct: 829 RVLLVEDNAINQEIAIELLGYAGVAVTPAASGQSALDLLNSEAPFDLVLMDIQMSDMDGY 888

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ P    + V  +             + G    + KP   E L  A+ +  + 
Sbjct: 889 ATTRQLRQDPRFKTLPVVAMTAHAMVSDREKALQLGMQDHIPKPIEPEQLFAALVQWIKP 948

Query: 121 QKSKDE 126
           +++  +
Sbjct: 949 RQANQQ 954



 Score =  102 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 3/115 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +   R++     N F   V    S   A +    E  P  +++D+ M G+   
Sbjct: 681 RVLVVDDNATAREILEEQLNAFHMEVCSVASGEAALDVLHHEPRPELILLDDQMTGLSGV 740

Query: 63  I--AHVRQMPLGTDVF-VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +R       +  V  L      +        G   F+ KP +   L   +
Sbjct: 741 ETVRRLRGQINLARIPEVLMLSDHGREKVRQEAEALGITHFMCKPISPSVLLETL 795


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +  +        G+ V  A +        +++     +++D  +  +
Sbjct: 7   MRERILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAV-LVILDVMLPEM 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F A + ++     + V  L      +  + G + GA+ +L KPF+       +  L +
Sbjct: 66  SGF-AVLSELRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIR 124

Query: 120 M 120
            
Sbjct: 125 R 125


>gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD    + ++ R      G+ V  A+   E  E  + +  P+ +V D +M  +  
Sbjct: 3   KRILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKAD-QPDLIVTDLAMPEMNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+M       +  L +       I     GA+ +L KPF+   L   +R   +
Sbjct: 62  LELTQAVRRMAT---TPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQLR 118

Query: 120 MQKSKDENQ 128
             ++ +  +
Sbjct: 119 RIEAAEPGE 127


>gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 238

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD   ++    ++     G           A +       P+ +V+D  + G+   
Sbjct: 11  SVLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRA-TAPDVVVLDLGLPGMDGV 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   +D +V  L    D    + G   GA+ ++ KPF+   L   ++ L +  +
Sbjct: 70  EVC-RQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPR 128

Query: 123 S 123
           +
Sbjct: 129 A 129


>gi|300710684|ref|YP_003736498.1| response regulator receiver protein [Halalkalicoccus jeotgali B3]
 gi|299124367|gb|ADJ14706.1| response regulator receiver protein [Halalkalicoccus jeotgali B3]
          Length = 122

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEG 58
           M++ + +VD    +R++        G+ V          +  +  +  P+ L++D  M  
Sbjct: 1   MNTDVFVVDDEPELRELVSFHLETAGYDVATYPDGEACWQQLQGTDSPPDVLLVDVMMPN 60

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F  +  VR     +++ V  L        ++ G   GA  +L KPF  + L   +  
Sbjct: 61  MNGFQLLKAVRDGEGLSELPVIMLTARGTETDVVQGFDIGATDYLTKPFRSQELLARIGR 120

Query: 117 LP 118
             
Sbjct: 121 YV 122


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    + +    L    GF    AT    A     K    + +++D  + G+ 
Sbjct: 1   MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKND-IDLVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCRRLRQV---STVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
 gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V         + V +  +  EA ++    +  +  ++D  +  +  F
Sbjct: 2   NILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYI-GSMKIDLAILDIMLPDIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++Q+       V  L  + ++   I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 61  -QILKQIRGKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRR 117


>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 222

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +RK+ R  FN   F V EA    +A +   KE   + +++D  +  + 
Sbjct: 1   MK-ILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVF-KENSVDIVILDIMIPYLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V +  L  + + E  + G   GA+ ++ KPF+ + L   ++ L 
Sbjct: 59  GWTVCKSIRQNSK---VPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALL 115

Query: 119 QM 120
           + 
Sbjct: 116 KR 117


>gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
 gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
          Length = 227

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++  + + ++ +    + G  V  AT+V E       E   + ++ D  +    
Sbjct: 1   MAKILVIEDENRMAELLKRGLEESGHTVGTATNVSEGLRMFAYEKQ-DIIISDIMLPDGS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      V +  L      +  + G  +GA+ +++KPF+   L   +  L 
Sbjct: 60  GFDLCRDIRRQNET--VPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILL 117

Query: 119 QM 120
           + 
Sbjct: 118 KR 119


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M+ +L+V+   ++ ++ R      GF V       E           + L++D  + G  
Sbjct: 1   MNKVLIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGW-DALILDVMLPGKS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    VR+      + V  +  + +    I G   GA+ +L+KPF+   L   ++   
Sbjct: 60  GFEVCREVRKSL---HLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHI 116

Query: 119 QMQKS---KDENQFLDAI 133
           Q+ +      E Q  DAI
Sbjct: 117 QIHERLLEHREQQKEDAI 134


>gi|317498308|ref|ZP_07956606.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894384|gb|EFV16568.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 208

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D   ++ K    + +D  + V  A S  +A     K ++P+ +++D  M  +    
Sbjct: 11  ILIIDDDLMLLKTAEEILSDQ-YNVSVAKSGIQALNLLNKNIIPDLILLDIDMPQMDGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++++     + + +L    + +  + G +AGA  +++KPF +E L   +    +  
Sbjct: 70  TLEEIKKISGCELIPIIFLTGFSEMDYEVRGLKAGAVDYIVKPFAKEILLARVERHLERY 129

Query: 122 KSKDENQFLD 131
           + +   + ++
Sbjct: 130 QQRQHKKSME 139


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  + +  F + GF V  A    +   F  +    + +V+D  +  +   
Sbjct: 2   RILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGL-FFAQNYSYDCIVLDIMLPVIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G  +G++ +L KPF+ E L    + + + +
Sbjct: 61  TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRK 119


>gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
 gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium
           meliloti BL225C]
          Length = 305

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    ++ + P+ +++D  M G+  F 
Sbjct: 11  VLLVDDSPEALGFLTEALEQSGFSVLIATSGNAALNIADR-ITPDIILLDAVMPGMDGFD 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V ++    + E ++    AG   +L KP N + LR  +R      
Sbjct: 70  TCTRLKANASVAQVPVVFMTGLTETEHVVRALEAGGVDYLTKPINIDELRARIRVHLSNA 129

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 130 RSAQSARVALDA 141


>gi|256819054|ref|YP_003140333.1| two component transcriptional regulator, winged helix family
           [Capnocytophaga ochracea DSM 7271]
 gi|256580637|gb|ACU91772.1| two component transcriptional regulator, winged helix family
           [Capnocytophaga ochracea DSM 7271]
          Length = 251

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +      GF V  A +  E  E  +KE   +  ++D  M     
Sbjct: 17  KHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETY-DMCILDVMMPYKDG 75

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F            + + +L      E +I G R+GA+ +L KPF+ E L   +R + Q +
Sbjct: 76  FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135

Query: 122 KSK 124
             +
Sbjct: 136 SIE 138


>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 248

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 22  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 81  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 137

Query: 121 QK 122
            +
Sbjct: 138 PR 139


>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 230

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    +           GF    A S  +  E        + L++D  +    
Sbjct: 1   MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHN-FDLLILDLGLPDRD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R       + +  L    D    +AG  AGA+ ++ KPF    L   +R   
Sbjct: 60  GFQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARL 117

Query: 119 QMQ--KSKDENQFLD 131
           + Q  K+ D+++ L 
Sbjct: 118 RNQPSKNADDDKTLS 132


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|71281676|ref|YP_267431.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71147416|gb|AAZ27889.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 246

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++LLV+    +         + GF V          +  +K    + +++D  + G  
Sbjct: 1   MYNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTT-DIVLLDVMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +RQ      V +  L    D    + G  AGA+ +++KP     L   +    
Sbjct: 60  GIEVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARINRQL 119


>gi|71066368|ref|YP_265095.1| putative hybrid two-component sensor and regulatory protein
            [Psychrobacter arcticus 273-4]
 gi|71039353|gb|AAZ19661.1| putative hybrid two-component sensor and regulatory protein
            [Psychrobacter arcticus 273-4]
          Length = 2284

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD S  VRKV        GF V  A    +A E   +E+ P+ +++D  M  +  
Sbjct: 2159 TTILVVDDSVTVRKVTSRFLERHGFNVVLAKDGIDALEIL-QEMTPDLMLLDIEMPRMDG 2217

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR       + +  +             + G N ++ KPF    L   ++ L 
Sbjct: 2218 FEVATQVRLNGCLQHLPIIMITSRTGERHRERALKIGVNDYIGKPFQENQLLDKIQSLL 2276


>gi|304320054|ref|YP_003853697.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
 gi|303298957|gb|ADM08556.1| putative diguanylate cyclase (GGDEF) [Parvularcula bermudensis
           HTCC2503]
          Length = 459

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  A    EA E    +  P+ +++D  M G+  F
Sbjct: 4   RVLVVDDLAPNVKLLEAKLRAEYFEVITALGGREAIELARTQS-PDIILLDVMMPGIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ PL   + V  +         IAG  AGA+ FL KP     L   +R L ++
Sbjct: 63  ETCKLLKEDPLTRHIPVVMVTALDQRSDRIAGLEAGADDFLTKPVQDLALFARVRNLSRL 122

Query: 121 QKSKDENQFLDA 132
           ++  DE +   A
Sbjct: 123 KQMTDELRHRHA 134



 Score = 54.8 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 33  SVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYLLMEVDFEKMI 90
              E  +    + LP+ +++D  +E        + +R       + +  +  + D  +++
Sbjct: 187 DSRELLDRIRTD-LPDMIMVDLGLESYDPLRLCSAIRSAEGSRLLPLLAIADQEDTRRLV 245

Query: 91  AGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                G N +L++P + + +   +R   + +
Sbjct: 246 KALDIGVNDYLMRPIDVQEMAARVRTQLRRK 276


>gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  S+L+ +    + ++        G+ V +A    +A E        + +++D  + G 
Sbjct: 1   MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRW-DLIILDIMLPGF 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E +  +R         +  L  +   E  ++G   GAN ++ KPF  E L   +R  
Sbjct: 60  SGIEILRRIRSKD--KQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAA 117

Query: 118 PQMQKSKDEN 127
            +++ +  E 
Sbjct: 118 LRIKSAGTEE 127


>gi|299541709|ref|ZP_07052039.1| signal transduction histidine kinase, LytS [Lysinibacillus
           fusiformis ZC1]
 gi|298725804|gb|EFI66438.1| signal transduction histidine kinase, LytS [Lysinibacillus
           fusiformis ZC1]
          Length = 1002

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD   +  KV   +     + +    +     E+  ++   + L++D  M     
Sbjct: 673 KKILIVDDDAVNLKVLIDILTQENYSIIAIDNGHHVFEYLTQQPSIDLLILDIMMPSISG 732

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    VRQ    T++ +  L   V  E MIA  + GAN FL KP +   L+  +R L  
Sbjct: 733 YEICQQVRQNYTSTELPILMLTAAVRPEDMIAAFQTGANDFLHKPLDATELKTRVRNLLL 792

Query: 120 MQKSKD 125
           +++S +
Sbjct: 793 LKESAE 798


>gi|237720732|ref|ZP_04551213.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229449567|gb|EEO55358.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1465

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDM-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1264

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1265 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1325 RKLFRERIRQQMENQ 1339


>gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 240

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++D    +R++      ++GF  +EA +  +A       +  + ++ D  M  +  
Sbjct: 12  KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVF-SNVQIDLVIADIMMPMMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +   ++++   ++V   +L  + D    I G + GA+ ++ KPFN   +   ++ L + 
Sbjct: 71  Y-ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRR 128


>gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
 gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         G+ V +A    EA +  +KE + + L++D  M  + 
Sbjct: 3   MFKILVCDDDKEIVEAIEIYLTQEGYEVLKAYDGEEAIQTLKKEHV-DLLIMDVMMPRLD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L    +   + 
Sbjct: 62  GIRATLKIREENS-LPIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRR 120


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    ++++ +       + V  A+   E      K+   + +++D  M  
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQS-FDLVLLDVMMPN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    + +   +++ +  L    + E  + G   G + ++ KPF+   L   +  + 
Sbjct: 60  LNGFEVA-KMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 223

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+          +   + G+ V  A    +       E   + +V+D  M  +  +
Sbjct: 2   NILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLAL-EFDFDVIVLDVMMPKMDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   TD  V +L    D    + G   GA+ +L+KPF+   L   +R L +   
Sbjct: 61  -EVLRRLRKETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 123 SKDENQFLDA 132
             +E Q   A
Sbjct: 120 IHEEEQLQVA 129


>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
           protein TCRA [Mycobacterium bovis AF2122/97]
 gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium bovis AF2122/97]
 gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 253

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +  +      + G  V        A    +     + +V+D  + G+  F
Sbjct: 24  RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDY-DAVVLDVMLPGIDGF 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L         IAG   GA+ +L KPFN + L   +R L + 
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRR 140


>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 224

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R + +       +   +  +  +A ++       + +++D  + G+   
Sbjct: 2   RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADY-DGIILDIMLPGLNGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V +L      E  + G   GA+ +L+KPF+ E L   +R + + + 
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 123 SKDENQF 129
           +   N+ 
Sbjct: 121 ALVSNRL 127


>gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++ +VD    + ++        G+ V    S        EK   P+ +++D  +      
Sbjct: 5   TVYVVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSE-PDIVILDIMLPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +DV +  L  + +    + G   G++ ++ KPF+   L   ++++ + 
Sbjct: 64  EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
 gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
          Length = 1828

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1708 RVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQNDDVAVVLMDIMMPEMDGY 1767

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + +R+MP    + +  L  +           +GA+ ++ KP   + L   M +  +
Sbjct: 1768 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLTVMEQHMR 1826


>gi|291618521|ref|YP_003521263.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153551|gb|ADD78135.1| BaeR [Pantoea ananatis LMG 20103]
          Length = 279

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    +  +        G     A     A     K L P+ +++D  +  +    
Sbjct: 54  ILVAEDDFEISDILMSYIKRAGMKAVHAAEGESALALI-KTLQPDLVLLDIQLPLIDGWN 112

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            ++ +R+    ++  V  +         + G R GA+ +++KPFN   +   +  + +  
Sbjct: 113 VLSTLRKE---SNTPVIMVTALDQDIDKLMGLRLGADDYIVKPFNPSEVVARIEAVLRRA 169

Query: 122 KSKDENQFL 130
           K++   Q L
Sbjct: 170 KNQAVPQSL 178


>gi|269968510|ref|ZP_06182517.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
 gi|269826881|gb|EEZ81208.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
          Length = 225

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    + V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLE 118

Query: 120 MQK 122
            +K
Sbjct: 119 SRK 121


>gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
 gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
          Length = 242

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R+               A S   A     K    + +V+D  M G     
Sbjct: 8   ILIVDDHRDIRESLARYLTKNNMRTTVAESAAAA-RKVLKNSSIDLVVLDIMMPGEDGL- 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +  R +       V  L    +    + G   GA+ ++ KPFN   L   +R + + 
Sbjct: 66  SLCRHLVETNQAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAVLRR 122


>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 1014

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ + + ++V + +    G  V  A    EA          + L +D  M  +   
Sbjct: 747 RVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALT-AYSHSPFDLLFMDCQMPNMDGY 805

Query: 62  -FIAHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R            +  +             +AG + +L KPF    +R  +   
Sbjct: 806 EATRAIRADEKQHHKTTCPIIAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLLNRW 865

Query: 118 PQMQK 122
              + 
Sbjct: 866 LSARN 870



 Score = 53.7 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 7/111 (6%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+VD   + R+  +    ++G     A    +A    + +     +++  ++  +     
Sbjct: 607 LIVDPHPLTRRSVQQQLREWGIKAKTADHGKKALAMLQAQN-FQIILVALTLPDMPGREL 665

Query: 63  IAHVRQMPLG--TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
           I H   +       +    L  +      I+   A   S+L KP     L 
Sbjct: 666 IQHCCDVAQTVPKHIITLGLTGQKLPPCRIS--DATTVSYLTKPIRPSKLL 714


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    + +V         +      S         K+   + +++D  +     
Sbjct: 4   QKILIVEDEENIAEVLIAYAKQQNYETEHFNSGK-GVVSFVKQNAVDLILLDLMLPDVDG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     + + +  L  + +    + G   GA+ ++ KPF+ + +   ++ + +
Sbjct: 63  IELCKKIRA---FSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLR 119

Query: 120 MQKSKDEN 127
                  N
Sbjct: 120 RTSQPKTN 127


>gi|325109884|ref|YP_004270952.1| response regulator receiver protein [Planctomyces brasiliensis DSM
           5305]
 gi|324970152|gb|ADY60930.1| response regulator receiver protein [Planctomyces brasiliensis DSM
           5305]
          Length = 153

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+ D +   R++     +D  +++  A          E    P+ +++D  M  +  
Sbjct: 13  NRILIADDNQQNRELVEAYLSDEDYVIEMAHDGQHTLAQVES-FQPDLILLDIMMPKMSG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++Q      + V  +    +   +     AGA+ FL KP NR  L+  +R L +
Sbjct: 72  FEVCQQLKQQEATQSIPVLMITALRETADIEKAVDAGADDFLSKPVNRVELKTRVRSLLR 131

Query: 120 MQKSKDENQFLDA 132
           ++   +E   L A
Sbjct: 132 VRHLTNERDRLLA 144


>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 823

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVL 60
             +LLV+ + + +KV   L   +G +V   T   EA E  +      + +++D  M G+ 
Sbjct: 689 KRVLLVEDNLVNQKVASRLLQKYGHVVITVTDGLEAVEALKSDHKAYDLVLMDIQMPGMD 748

Query: 61  EF--IAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                  +R+         + +  L              AG + +L KPF+ + +   +R
Sbjct: 749 GLEATRRIRKDELGSGWHKIPIIGLTANAMKGYQDICYEAGMDGYLPKPFDIKQVLSTIR 808


>gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 246

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +  V+    +R++  +     GF      +  E  +   K+ +P  +++D  + G     
Sbjct: 24  IYCVEDERNIRELLVYTLETTGFEAEGFETGAE-LDTAMKKNMPELILLDIMLPGEDGYN 82

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++      D+ V  +  +      + G   GA+ ++ KPF        ++ + +  
Sbjct: 83  ILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRC 142

Query: 122 KSKDENQFL 130
             + E + L
Sbjct: 143 ARQSEEREL 151


>gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +++    +  +        G  VF   +  EA +    EL P+ +++D  +  +  
Sbjct: 4   QKIFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVI-ELNPDLIILDLMLPDISG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++M    D+ +  L  +   E+ +AG   GA+ ++ KPF+   L + ++ + +
Sbjct: 63  EELCQDIKEM---VDIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAILK 119

Query: 120 MQKSKDENQF 129
             +     + 
Sbjct: 120 RVRKSSSEKL 129


>gi|288925412|ref|ZP_06419346.1| putative response regulator receiver domain protein [Prevotella
            buccae D17]
 gi|288337883|gb|EFC76235.1| putative response regulator receiver domain protein [Prevotella
            buccae D17]
          Length = 1298

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L++D  H   ++         F V +A    +  E   +  LP+ +V D  M  +   
Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAAR-TLPDIIVCDLMMPNMDGM 1112

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F+  ++       + V     +   E MI     GA+++L KP +   LR  +  L   
Sbjct: 1113 EFLHTLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQ 1172

Query: 121  QKSKD 125
              + +
Sbjct: 1173 SNTAE 1177


>gi|224537326|ref|ZP_03677865.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224521057|gb|EEF90162.1| hypothetical protein BACCELL_02204 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1313

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 10/138 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
            +LL+D +  +  V + +F +  + V  A    +A +   K    + ++ D  +      E
Sbjct: 1065 ILLIDDNTELLFVMKEMFRER-YTVLTAADGQQAWDKL-KNNEVDVVICDVMLPDANGWE 1122

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              A ++       + V  L  +   E  +A   AGA+ ++ KPF  + L   +  L +  
Sbjct: 1123 LCARMKGDLRFNHIPVIILTAKNGIEDRVASYEAGADGYIAKPFELKILFARVDNLIRSS 1182

Query: 122  KSK------DENQFLDAI 133
            K +      +EN  L+++
Sbjct: 1183 KMRQAAFRKEENLDLESL 1200


>gi|78224192|ref|YP_385939.1| response regulator receiver (CheY-like) modulated metal dependent
           phosphohydrolase [Geobacter metallireducens GS-15]
 gi|78195447|gb|ABB33214.1| response regulator receiver (CheY-like) modulated metal dependent
           phosphohydrolase [Geobacter metallireducens GS-15]
          Length = 361

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++++VD +    ++   +  +  + V        A +  +K   P+ +++D +M G+  F
Sbjct: 9   NIMIVDDTPANLRLLETMLQEKNYRVLLFPRADIALKAAKKNP-PDLVLLDITMPGMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++         V +L    +    +     G   ++ KPF  E +   +     +
Sbjct: 68  QFCASLKADSRLCSTPVIFLSGLNEPADKVKAFSLGGVDYITKPFQLEEVHARVETHLNL 127

Query: 121 QKSKDE----NQFLDA 132
           ++ + E    N+ L++
Sbjct: 128 RRLQMEVESHNRNLES 143


>gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 234

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 227

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  V     +  G+         +A      +  P+ +++D  +   G L+
Sbjct: 10  VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V V  +   V+    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 69  ICRDLRKESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125

Query: 122 K 122
           +
Sbjct: 126 R 126


>gi|253689068|ref|YP_003018258.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755646|gb|ACT13722.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V        G+ V  A+   +          P+ +++D  +  +  
Sbjct: 4   KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQKGLHMALTSK-PDLILLDVMLPKMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              ++ +RQ    +++ V  +    D  + I   R GA+ +++KP+N + +   ++ + +
Sbjct: 63  SEVLSALRQR---SNIPVIMVTAIGDEPERIGALRYGADDYVVKPYNPQEVVARVQAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
 gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + +    L    G+ V +A +  EA +    + + + +++D  M  +   
Sbjct: 11  TVLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKV-HLIILDVMMPELNGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ V  L  + +    + G   GA+ ++ KP+N   L   ++   + 
Sbjct: 70  SALMKIREKN-NIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRR 126


>gi|153833378|ref|ZP_01986045.1| response regulator receiver domain protein [Vibrio harveyi HY01]
 gi|148870387|gb|EDL69313.1| response regulator receiver domain protein [Vibrio harveyi HY01]
          Length = 225

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
 gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
          Length = 240

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +++VD +  +      L    G+ V  A    EA    E+  + + +++D  M  +    
Sbjct: 12  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPV-DLILLDVMMPRLNGLS 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A ++       + V  L  + +    ++G   GA+ ++ KP+N   L   ++   +  ++
Sbjct: 71  ALMKLREKYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRA 129


>gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89]
 gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89]
          Length = 240

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 6   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 122

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 123 RQEAMGQNILLA 134


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L  +   E  + G   G + +L+KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 233

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     EK  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|189466394|ref|ZP_03015179.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM
            17393]
 gi|189434658|gb|EDV03643.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM
            17393]
          Length = 1404

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R   R +  D+ + V EAT+  EA +    + + ++++ D  M  +   
Sbjct: 1152 TILVVEDNADMRGYIRSILRDY-YNVLEATNGAEALDVLNNQSV-DFIISDLMMPVMDGI 1209

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V++    + +    L  +   E  +   R G + +LLKPF+   L   +  +   
Sbjct: 1210 ELSRRVKEAFAISHIPFLMLTAKTSPETRLESYRTGVDEYLLKPFDETLLLTRIENILDN 1269

Query: 121  QKSKDE 126
            ++    
Sbjct: 1270 RRRYQR 1275


>gi|108757005|ref|YP_628980.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108460885|gb|ABF86070.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 1967

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +   +G  V  A S  E  +  EK+     +++D  M  +  
Sbjct: 1832 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESAREGLDQLEKDADIELVLMDVMMPEMDG 1891

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+M     + +  L  +           AGA+ ++ KP + E L   +R   
Sbjct: 1892 YQAMRAIRRMERFVHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 1950



 Score = 45.2 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 4/112 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
            LL+V+   + R+    L            +  E       E   + +V+D  +  +   E
Sbjct: 1688 LLVVEDDPVHRQTLTELLGSDDVQTVAVGTAAE-ALAALAERRFDCMVLDLGLPDMPGTE 1746

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             I  V +        +                R  A + ++K   + E L  
Sbjct: 1747 LIRRVHEAHGAGGPPLIVYTGRELTRAQETELRRVAEAIVVKDAQSPERLLE 1798



 Score = 37.9 bits (88), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 17   GRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD 74
             R      GF +  +T V +A +   +   P  + +D  +  +     +  ++       
Sbjct: 1579 LRAAAQGTGFKLLVSTEVEDALDAV-RNTRPAAVAVDLDLPEMAGWVVLDRLKHDASTRA 1637

Query: 75   VFVYYLLMEVDFEKMIAGARAGANSFL 101
            + VY + +    +        GA   L
Sbjct: 1638 LPVYTVSV---EDHRERSLNLGAIGHL 1661


>gi|86608396|ref|YP_477158.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556938|gb|ABD01895.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 341

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD     R     L     F V EAT+  EA E  E+ L P+ +++D  M  +  F 
Sbjct: 23  VLVVDDQASSRLYIGELLRSAHFRVSEATNGEEALEAVER-LRPDLVLLDVLMPNMSGFD 81

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++   L   + V  +    D    + G + GA+  L KPF+   L   +R     +
Sbjct: 82  VCRQLKANELTRLIPVVLITALTDRSNRLMGMQVGADDILTKPFDHVELLARVRSSIHQK 141

Query: 122 KSKDEN 127
           +  ++ 
Sbjct: 142 RLNEDL 147


>gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 225

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ +    +R +        G+ VF+A +  EA +  +KE   +  ++D  M+G+  F
Sbjct: 2   NILIAEDEQDIRNLLELHLLKEGYTVFKAVNGLEALDILKKEH-IHLALLDVMMDGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-Q 121
              ++ +   + + V +L  +++ +  I G   GA+ +++KPF    L   ++   +   
Sbjct: 61  -NLLKMLREWSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCY 119

Query: 122 KSKDENQFLD 131
           K   EN+ + 
Sbjct: 120 KYSGENELIK 129


>gi|113968825|ref|YP_732618.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-4]
 gi|113883509|gb|ABI37561.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. MR-4]
          Length = 348

 Score =  133 bits (336), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD +    ++   + ++  + +  ATS  +A +      LP  +++D  M  +  F
Sbjct: 9   TLLVVDDTPDNIQIIHGILSEQ-YTIRAATSGEKALKLASTHPLPELILLDVMMPEMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P+ + + V ++  + D      G   GA  ++ KP +   L+   +    +
Sbjct: 68  ETCRRLKRDPVTSKIPVVFVTAKTDTIDEQTGFELGAVDYISKPISPAVLKVRTQTHLAL 127

Query: 121 QKSKDENQFL 130
                + + L
Sbjct: 128 SNQARQLEAL 137


>gi|332880362|ref|ZP_08448040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681807|gb|EGJ54726.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1209

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+ + +   R   + L     F V  A    E      +E  P+ ++ D  M  +   
Sbjct: 1097 TVLVAEDNEQFRTFMKDLLGQ-DFTVLTAADGQEGLAMA-REYGPDLIISDVMMPHMDGY 1154

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
             F   V+       +    L  +   E       AGA+SF+ KPF+ + L   +R
Sbjct: 1155 AFCRAVKDDVQCCHIPFILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIR 1209


>gi|325498139|gb|EGC95998.1| DNA-binding transcriptional activator KdpE [Escherichia fergusonii
           ECD227]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 248

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R +     +  G+ V  A +   A     +   P+ +V+D  +  +  F
Sbjct: 14  NVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRG-QPDLIVLDVGLPDIDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G    V +L    D E  I G  +G + ++ KPF+ + +   +R + + 
Sbjct: 73  AVTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRR 130


>gi|300772342|ref|ZP_07082212.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760645|gb|EFK57471.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  ++LLV+       + +      G  V       EA    +++   +  ++D  M  +
Sbjct: 1   MKYNILLVEDDEDFGFMLKQYLELSGLEVRLIAHPQEAEALLDQDFTFHLAILDVMMPYM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    + +         +L  +      + G + GA+ ++ KP + E L   ++ + +
Sbjct: 61  SGFTLAQKILSRYPGFPFIFLTAKDQKIDKLTGLKIGADDYITKPCDPEELVLRIQNIVR 120

Query: 120 MQK 122
             +
Sbjct: 121 RSQ 123


>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|219667612|ref|YP_002458047.1| response regulator receiver modulated diguanylate cyclase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537872|gb|ACL19611.1| response regulator receiver modulated diguanylate cyclase
           [Desulfitobacterium hafniense DCB-2]
          Length = 455

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      K+         ++V  A +  EA E    +  P+ +++D  M  +   
Sbjct: 161 RVLIVDDQLFNLKLLESAL-KEDYIVMTADNGIEALELATGKSQPDIILLDIIMPVMDGY 219

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+MP   D+ V +L    + +      + G   ++ KPF+   ++  +R   + 
Sbjct: 220 EVCIRLREMPETRDIPVIFLSALKNEKNEEYALQLGVVDYITKPFSLPIIKGRLRNHVEQ 279

Query: 121 QKSKDENQ 128
           +K +D  +
Sbjct: 280 KKYRDRQK 287


>gi|160887918|ref|ZP_02068921.1| hypothetical protein BACUNI_00322 [Bacteroides uniformis ATCC 8492]
 gi|156862604|gb|EDO56035.1| hypothetical protein BACUNI_00322 [Bacteroides uniformis ATCC 8492]
          Length = 1360

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+VD +  +    +   + + F +  A++  EA +    EL+P+ +V D  M  +     
Sbjct: 1115 LIVDDNEDLVAFMKDSLSLY-FRIQSASNGREAWQKIP-ELMPDIIVSDVMMPEMDGNEL 1172

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               V+     +D+ +  L      E  + G   GA+ ++ KPFN E L   MR+L  + K
Sbjct: 1173 CRWVKTDKRTSDIPMILLTARQAVEDKVEGLTIGADDYVTKPFNVEILILRMRKLIDLSK 1232

Query: 123  SKDENQFLD 131
             +     +D
Sbjct: 1233 KRKAKSLID 1241


>gi|159898682|ref|YP_001544929.1| GAF sensor-containing adenylate/guanylate cyclase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891721|gb|ABX04801.1| adenylate/guanylate cyclase with GAF sensor(s) [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 1020

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+    + ++ + L  D G+ V  A S  EA +F    + P+ +++D S+ G+    
Sbjct: 9   VLIVEDDLSISRMFQLLLRDAGYRVSLANSSEEALQFVRV-ITPDIILLDISLPGMNGVD 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H+R  P    + +  +    D    +A   AGA+  L+KP     L   +R + ++Q
Sbjct: 68  LTRHLRSNPAIPFIPIIQITALGDLRTKVAALDAGADDILVKPIELSELLARLRVMLRLQ 127

Query: 122 KSKD 125
           K++ 
Sbjct: 128 KNRR 131


>gi|116749367|ref|YP_846054.1| two component sigma54 specific Fis family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698431|gb|ABK17619.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Syntrophobacter fumaroxidans MPOB]
          Length = 476

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + +  R +  D G+ +  A S  EA E   ++  P+ +++D  M G+
Sbjct: 1   MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDT-PDLMLLDIWMPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                          + V  +    + E  +   R GA  F+ KP + E +  +++    
Sbjct: 60  DGLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALD 119

Query: 120 MQKSKDEN 127
             + ++EN
Sbjct: 120 FHRLEEEN 127


>gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V         + V          +   +   P+ +++D  + G+  
Sbjct: 4   KRILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARR-WQPDLILLDIMLPGMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +A +R+     D  V  +    D    I   R GA+ +++KP++   +   ++ + +
Sbjct: 63  TEVLAALRRRD---DTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLR 119

Query: 120 MQKSKD 125
             ++  
Sbjct: 120 RSQNSA 125


>gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+ +    +         + GF V  A    EA E  + +   + +++D  M  
Sbjct: 1   MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGA-DLIIMDLMMPR 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   + V +  L  + +    + G   GA+ ++ KPFN   L   +    
Sbjct: 60  LSG-EEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNL 118

Query: 119 QMQKSKD 125
           +   S D
Sbjct: 119 RRYHSYD 125


>gi|220906185|ref|YP_002481496.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
 gi|219862796|gb|ACL43135.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
          Length = 123

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+ + + R +        G+ V  A    +  E    +  P+ +++D S+    
Sbjct: 1   MPKILLVEDNEMNRDMLSRRLTRKGYDVTIAVDGQQGVELAHTQT-PDLILMDMSLPVID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++       + V  L              AG + +  KP +   L   +  L 
Sbjct: 60  GWEATRQLKASSQTQAIPVIALTAHAMSGDREKALEAGCDDYDTKPIDLPQLLSKIEALL 119


>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++   +    GF         EA     +E  P+ +++D  + G   +
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIF-RESKPDLVLLDLMLPGLDGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           E  + +R         +  L  + D   ++ G  +GA+ +++KPFN + L   +R   +
Sbjct: 63  EVCSSIRAESG---TPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLR 118


>gi|26246669|ref|NP_752709.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           CFT073]
 gi|110640911|ref|YP_668639.1| DNA-binding transcriptional activator KdpE [Escherichia coli 536]
 gi|117622899|ref|YP_851812.1| DNA-binding transcriptional activator KdpE [Escherichia coli APEC
           O1]
 gi|191174051|ref|ZP_03035567.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli F11]
 gi|218557620|ref|YP_002390533.1| DNA-binding transcriptional activator KdpE [Escherichia coli S88]
 gi|218688498|ref|YP_002396710.1| DNA-binding transcriptional activator KdpE [Escherichia coli ED1a]
 gi|227884331|ref|ZP_04002136.1| KDP operon transcriptional regulator [Escherichia coli 83972]
 gi|237707336|ref|ZP_04537817.1| KDP operon transcriptional regulatory protein kdpE [Escherichia sp.
           3_2_53FAA]
 gi|300989943|ref|ZP_07179019.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 45-1]
 gi|300996532|ref|ZP_07181462.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 200-1]
 gi|301046025|ref|ZP_07193206.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 185-1]
 gi|306812887|ref|ZP_07447080.1| DNA-binding transcriptional activator KdpE [Escherichia coli NC101]
 gi|331645852|ref|ZP_08346955.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli M605]
 gi|331656719|ref|ZP_08357681.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli TA206]
 gi|26107068|gb|AAN79252.1|AE016757_156 KDP operon transcriptional Regulatory protein kdpE [Escherichia
           coli CFT073]
 gi|110342503|gb|ABG68740.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli 536]
 gi|115512023|gb|ABJ00098.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli APEC O1]
 gi|190905659|gb|EDV65282.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli F11]
 gi|218364389|emb|CAR02068.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli S88]
 gi|218426062|emb|CAR06879.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli ED1a]
 gi|222032441|emb|CAP75180.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli LF82]
 gi|226898546|gb|EEH84805.1| KDP operon transcriptional regulatory protein kdpE [Escherichia sp.
           3_2_53FAA]
 gi|227838417|gb|EEJ48883.1| KDP operon transcriptional regulator [Escherichia coli 83972]
 gi|300301998|gb|EFJ58383.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 185-1]
 gi|300304506|gb|EFJ59026.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 200-1]
 gi|300407218|gb|EFJ90756.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 45-1]
 gi|305853650|gb|EFM54089.1| DNA-binding transcriptional activator KdpE [Escherichia coli NC101]
 gi|307552553|gb|ADN45328.1| transcriptional regulatory protein KdpE [Escherichia coli ABU
           83972]
 gi|312945229|gb|ADR26056.1| DNA-binding transcriptional activator KdpE [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315287128|gb|EFU46542.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 110-3]
 gi|315292070|gb|EFU51422.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 153-1]
 gi|320194139|gb|EFW68771.1| DNA-binding response regulator KdpE [Escherichia coli WV_060327]
 gi|323952738|gb|EGB48606.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323958447|gb|EGB54153.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324006265|gb|EGB75484.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 57-2]
 gi|324010423|gb|EGB79642.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 60-1]
 gi|330910451|gb|EGH38961.1| DNA-binding response regulator KdpE [Escherichia coli AA86]
 gi|331044604|gb|EGI16731.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli M605]
 gi|331054967|gb|EGI26976.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli TA206]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2142

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +   +G  V  A S  E     EK+     +++D  M  +  
Sbjct: 2008 RKVLVVDDDVRNIFALNTVLERYGMKVAFAESGAEGISLLEKDTEVELVLMDVMMPEMDG 2067

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R M     + +  L  +           AGA+ ++ KP + E L   +R   
Sbjct: 2068 YQAMRAIRGMERFAHLPILALTAKAMKGDREKCLEAGASDYITKPVDIEKLLSLLRVWL 2126



 Score = 58.3 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             SLL+V+   + R+    L           ++  +A+E        + +V+D  +     
Sbjct: 1862 RSLLIVEDDDVHRQALTELLGSEDVQTVAVSTAAQAQEAI-AGRRFDCMVMDLGLPDLPG 1920

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             + +  +      +                    R  A + ++K   + E L  
Sbjct: 1921 ADLLRQLHAEHGASTPPAIVYTGRELTRAQETELRRLAEAIIVKDAQSPERLLE 1974



 Score = 37.9 bits (88), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 17   GRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTD 74
             R      GF +  +T    A E           V D  +  +     +  ++       
Sbjct: 1755 LRAAAQGVGFKLLVSTEAESALEMARNARTVAVAV-DLDLPDMAGWVVLDRLKHDAATRA 1813

Query: 75   VFVYYLLMEVDFEKMIAGARAGANSFL 101
            + VY +      +        GA   L
Sbjct: 1814 LPVYTVSG---EDHRDRSLTLGALGHL 1837


>gi|295084146|emb|CBK65669.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
            B-, and HSP90-like ATPase./Response regulator receiver
            domain./Two component regulator propeller./Bacterial
            regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
            domain. [Bacteroides xylanisolvens XB1A]
          Length = 1465

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1207 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKIHL-YHPDIVVTDQMMPEMDGL 1264

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1265 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1324

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1325 RKLFRERIRQQMENQ 1339


>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
 gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
          Length = 231

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      +  + VF+  +  EA E  +K    +  ++D  +  V   
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-AIDLAILDIMLPDVSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  TICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|89891885|ref|ZP_01203385.1| response regulator [Flavobacteria bacterium BBFL7]
 gi|89515738|gb|EAS18540.1| response regulator [Flavobacteria bacterium BBFL7]
          Length = 387

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M ++LL++    +R+V   + ++    + V EA    E  E+ +KE   + ++ D  M  
Sbjct: 1   MANILLIEDEAAIRRVLSKILSEENKNYTVTEAVDGLEGIEYIKKEDY-DLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  ++ V  +    D +  +   R GA  ++ KP +   L   +R   
Sbjct: 60  MDGVEVLEAMKKIKPEIPVVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119

Query: 119 QMQKSKDENQFLD 131
             +    EN+ L 
Sbjct: 120 DRKSLVVENKRLK 132


>gi|75907788|ref|YP_322084.1| response regulator receiver (CheY) modulated serine phosphatase
           [Anabaena variabilis ATCC 29413]
 gi|75701513|gb|ABA21189.1| Response regulator receiver (CheY) modulated Serine phosphatase
           [Anabaena variabilis ATCC 29413]
          Length = 396

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D   +VR V +    + G+      +  E      K L P  ++ D  M G+ 
Sbjct: 1   MVKILVIDDDPVVRTVLKRTLENQGYETTVVNNGEEGIIQA-KLLRPALIICDWVMSGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                  V+  P     F   L  +     + +  + G  AGA+ F+ KP     L+  +
Sbjct: 60  GLEVCRQVKANPELATSFFILLTAKGAAPGEEKDRVKGLDAGADEFISKPIEMIELKARV 119

Query: 115 RELPQMQKSKDENQ 128
           R   ++ +   + Q
Sbjct: 120 RAGLRLHQLNQDLQ 133


>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
 gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
          Length = 236

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G+ V  A       E        + L++D  + G   L
Sbjct: 8   RILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNY-DLLILDWMLPGKTGL 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+   G    V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 67  EICQELRRQ--GKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 124

Query: 121 QKSK 124
             S+
Sbjct: 125 SSSQ 128


>gi|117924809|ref|YP_865426.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608565|gb|ABK44020.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 250

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D    + ++         F V  A S   A +   ++   + +V+D  +       
Sbjct: 7   ILVCDDDPDILRLVGDYLEQRDFRVRLADSGG-AMKQILEQTQIDVVVLDLILPDEDGLQ 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     +++ +  L  + +    I G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 66  LCRELRAR---SNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRA 122

Query: 122 KSKDE 126
           +S  E
Sbjct: 123 RSLPE 127


>gi|323170809|gb|EFZ56459.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli LT-68]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|320539293|ref|ZP_08038963.1| putative DNA-binding response regulator in two-component regulatory
           system with CpxA [Serratia symbiotica str. Tucson]
 gi|320030685|gb|EFW12694.1| putative DNA-binding response regulator in two-component regulatory
           system with CpxA [Serratia symbiotica str. Tucson]
          Length = 237

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +LLVD    +  + + L    GF +  A    +A    +     N L++D  M    
Sbjct: 2   MNKILLVDDDRELTLLLKELLEMEGFNITVAHDGEQALSLLDSS--INLLLLDIMMPKKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + 
Sbjct: 60  GIDTLKELRQH---HHTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 116

Query: 119 QMQKSKDENQFLD 131
           +     ++ Q +D
Sbjct: 117 RRSNWNEQQQHVD 129


>gi|317481392|ref|ZP_07940460.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316902488|gb|EFV24374.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 1330

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
             +L+V+ +  +R      F+   + V    +  EA     K+  P  ++ D  M  +   
Sbjct: 1068 RILIVEDNDELRNYLFQSFSKI-YNVQVCNNGKEALTIV-KQFWPELILSDIMMPEMRGD 1125

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L    D + ++ G   GA+ +++KPF+   L+ ++  L   
Sbjct: 1126 ELCIAIKNDIETSHIPVVLLTALGDEKNILEGLHIGADEYIVKPFSINILKASIANLLAN 1185

Query: 121  QKSKDE 126
            +    +
Sbjct: 1186 RALLRK 1191


>gi|319791415|ref|YP_004153055.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593878|gb|ADU34944.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 247

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V    +    R   E+    + +++D  + G     
Sbjct: 9   ILIVDDDREIRELLTTYLVKNGLRVVAVPTGRHMRAALEESGPFDLIILDLMLPGEDGLT 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         +  L    +    I G   GA+ +L KPF+   L   +R + +  
Sbjct: 69  LCRDLRT-GKYKATPILMLTARSEEADRILGLEMGADDYLAKPFSARELLARIRSVMRRT 127

Query: 122 KSKDEN 127
           +    N
Sbjct: 128 RMLPPN 133


>gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 223

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    + ++     N  G++   A+   EA +    E   + +++D ++      
Sbjct: 2   KVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENY-DIIILDINLPKKDGF 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ     +V +  L    D +  + G   GAN ++ KPF+ + L   MR L + 
Sbjct: 61  EVLRDIRQ--FNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRR 118

Query: 121 QKSKDENQFL 130
           +   +E + +
Sbjct: 119 KSIMEETEIM 128


>gi|171913996|ref|ZP_02929466.1| response regulator receiver sensor signal transduction histidine
           kinase [Verrucomicrobium spinosum DSM 4136]
          Length = 383

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D      ++   + +   + +  A S  +A +       P+ +++D  M  +   
Sbjct: 9   TILIIDDQEQNLQIVGTILSMMDYDIIPALSGEQAFKRLGV-RKPDLILLDVMMPEMDGL 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + V +L    D   ++     G   ++ KPFNR  L   +R    +
Sbjct: 68  EVCRRLQANPDWSGIPVIFLSAADDKNLIVQALETGGVDYVTKPFNRAELLSRVRTHLAL 127

Query: 121 QKSKDENQFLDA 132
           + ++D+ + L  
Sbjct: 128 KHARDDLRLLAE 139


>gi|167766414|ref|ZP_02438467.1| hypothetical protein CLOSS21_00919 [Clostridium sp. SS2/1]
 gi|167711823|gb|EDS22402.1| hypothetical protein CLOSS21_00919 [Clostridium sp. SS2/1]
          Length = 208

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D   ++ K    + +D  + V  A S  +A     K ++P+ +++D  M  +    
Sbjct: 11  ILIIDDDLMLLKTAEEILSDQ-YNVSVAKSGIQALNLLNKNIIPDLILLDIDMPQMDGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++++     + + +L    + +  + G +AGA  +++KPF +E L   +    +  
Sbjct: 70  TLEEIKKISGCELIPIIFLTGFSEMDYEVRGLKAGAVDYIVKPFAKEILLARVERHLERY 129

Query: 122 KSKDENQFLD 131
           + +   + ++
Sbjct: 130 QQRQHKKSME 139


>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +         +  + V +  +  +A    E E   +  ++D  +  +  F
Sbjct: 5   TVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHEN-IDLAILDVMLPDIDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++Q+ L  +  V  L  +V     I G   GA+ ++ KPF    L   ++   + 
Sbjct: 64  -EILKQIRLTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRR 120


>gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
 gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
          Length = 230

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++                      E    +   + +++D  + G  
Sbjct: 1   MSKVLIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQ-YFDIILLDLMLPGKD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    + V +  +   VD    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 60  GITLCKEIRQ---FSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVL 116

Query: 119 QMQKSKDE 126
           +  +S+ +
Sbjct: 117 RRTQSQTQ 124


>gi|160896640|ref|YP_001562222.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
 gi|160362224|gb|ABX33837.1| response regulator receiver modulated diguanylate cyclase [Delftia
           acidovorans SPH-1]
          Length = 316

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 4/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD       V   +  D       A +  EA     +   P+ +++D  M G+  
Sbjct: 21  QKVLVVDDVPDNATVICQVIKDL-CGPLVAYTGEEALALAHQH-QPDLILLDIRMPGMDG 78

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++       + + +L    +      G   GA  F+ KPF    L+  +R   +
Sbjct: 79  FEVCRRLKADLQTAHIPIIFLTALTEPHCEELGLNLGAVDFVTKPFRPAVLKARVRTHLE 138

Query: 120 MQKSKDENQFLD 131
           + + +   Q L 
Sbjct: 139 IAQQRQMLQLLS 150


>gi|77461476|ref|YP_350983.1| diguanylate cyclase/phosphodiesterase [Pseudomonas fluorescens
           Pf0-1]
 gi|77385479|gb|ABA76992.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 707

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD         R L     + V  A S  EA     +  + + +++D  M G+  F 
Sbjct: 15  LLIVDDYPENLISMRALLQRQDWQVITAASGFEALSLLLEHDV-DLVLLDVQMPGMDGFE 73

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R         + +L      +  +  G  +GA  +L KPF+ + L+  ++ L + 
Sbjct: 74  VARLMRGSQRTRLTPIIFLTANEQSQDAVIKGYASGAVDYLFKPFDPQILKPKVQALLEH 133

Query: 121 QKSKDENQFLD 131
           Q+++   Q L 
Sbjct: 134 QRNRRALQRLS 144


>gi|17230366|ref|NP_486914.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131968|dbj|BAB74573.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 330

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R   R      G+   EA    +A     +EL P+ +++D  M  +  F 
Sbjct: 12  ILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIF-QELQPDIVLLDAIMPDLDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++ +  G    V  +    D E +      GA  ++ KP +   LR  ++ L Q  
Sbjct: 71  CCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQF 130

Query: 120 --MQKSKDENQFLDAI 133
              QK +  N+ L  +
Sbjct: 131 HLQQKLEAANRELQRL 146


>gi|312131048|ref|YP_003998388.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311907594|gb|ADQ18035.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1336

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ +  +R     LF+   F    A +  E  +    ++LP+ ++ D  M  +  
Sbjct: 1084 QKLLIVEDNEDLRNYLVSLFHSH-FETHSAANGKEGMDKAL-QILPDIILSDVMMPVMNG 1141

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            LEF   ++  P    + +  L         + G  +GA+ +++KPFN + L   +  L  
Sbjct: 1142 LEFCERIKNNPKTAHIPLILLTARAATLHELEGLESGADDYIVKPFNPKVLHTKILSLIS 1201

Query: 120  MQKSKDE 126
             +K   E
Sbjct: 1202 NRKKAQE 1208


>gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +      G+ V               E   +  ++D  + G  
Sbjct: 10  MSKILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHED-IDMCILDIMLPGTD 68

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR++    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 69  GFEICKQVREV---KDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHL 125

Query: 119 QM 120
             
Sbjct: 126 AR 127


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++        GF V        A E  ++    + +V+D  + G+   
Sbjct: 2   RILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEY-DAIVLDVMLPGMNGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         V  L           G   GA+ ++ KPF+   L   +R L +  +
Sbjct: 61  RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120

Query: 123 SKD 125
            + 
Sbjct: 121 RER 123


>gi|254386383|ref|ZP_05001689.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194345234|gb|EDX26200.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +  +       F V EA               P+ +++D  +  + 
Sbjct: 1   MTRVLVVEDDPQLVRALKINLQARKFEVLEAGDGAM-ALRLAAARTPDAILLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   + V +  L      E+ I    AGA+ ++ KPF+ + L   +R   + 
Sbjct: 60  GV-EVIRGVRGWSHVPILVLSARHTSEEKIRALDAGADDYVTKPFSMDELLARLRAATRR 118

Query: 121 QKS 123
           Q++
Sbjct: 119 QEA 121


>gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 229

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +     R     + +  GF V  A    EA E  + +  P+++ +D  M      
Sbjct: 2   KILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQ-RPDFVCLDVMMPHLDGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+      V + +L  + +    + G   GA+ ++ KPF    +   +R + + 
Sbjct: 61  EVCRRIRRDDDT--VPILFLTAKSEEIDAVLGLELGADDYMAKPFGVREILARIRAITRR 118

Query: 121 QKSKDENQ 128
                  Q
Sbjct: 119 TGLLRRTQ 126


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +LLV+    +           G+ V  A    EA E  E       +++D  + G
Sbjct: 1   MKNFKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVE-NTEYQLILLDIMIPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    +RQ    + V +  L  + D    + G   GAN +L KPF  E L   +R 
Sbjct: 60  LNGIEVCRRIRQ---FSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIR- 115

Query: 117 LPQMQKS 123
           + + +K 
Sbjct: 116 VYEREKL 122


>gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 234

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 4/123 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++    + ++        GF+V  A          + +  P+ +++D  +  +  
Sbjct: 3   QHLLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDP-PDLVILDLMLPDMDG 61

Query: 62  F--IAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R +P     + V  L  + D    I G   GA+ +L KPF    L   +R + 
Sbjct: 62  LEVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVL 121

Query: 119 QMQ 121
           +  
Sbjct: 122 RRH 124


>gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61
            +LLV+    +    +       ++V       +A  + E +       + D  + G+  
Sbjct: 2   RVLLVEDEPDLGAAIKRTLTQQKYLVDWVLDGNDAWAYLENQWTQYTLAIFDWMLPGISG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R     + + V  L  +   E  + G  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRS 121

Query: 122 KSKDENQF 129
                 + 
Sbjct: 122 PQFQPQEL 129


>gi|86133169|ref|ZP_01051751.1| two-component system response regulator [Polaribacter sp. MED152]
 gi|85820032|gb|EAQ41179.1| two-component system response regulator [Polaribacter sp. MED152]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V  A    E      K    +  ++D  M     
Sbjct: 4   KKILLVEDDPNFGTVLKDYLALNDYNVTHAKDGIEGL-IMFKNSDYDLCILDVMMPRKDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           +V + +L  +   E ++ G   GA+ +L KPF+ E L   ++ + Q +
Sbjct: 63  FSLAQDIRSTNKEVPIIFLTAKTLKEDVLKGYSVGADDYLNKPFDSEVLLHKIKAILQRK 122

Query: 122 KSKDENQ 128
           +S    +
Sbjct: 123 ESDKSTE 129


>gi|312891997|ref|ZP_07751498.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
 gi|311295494|gb|EFQ72662.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
            paludis DSM 18603]
          Length = 1392

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+ +  +R+          + + EA +  E        L P+ +V D SM  +    
Sbjct: 1136 VLIVEDNSEMRQYLADSLGAS-YKISEAANGREGWHKALA-LHPDLVVSDISMPYMDGIE 1193

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     + + +  L      +  +AG   G + +L KPF+ E L   ++ L  + 
Sbjct: 1194 LSRKLKSDKRTSHIPIILLTAMASQQDQLAGLELGVSDYLTKPFHFEILNIKIKNLLHVN 1253

Query: 122  KSKDE 126
            ++  E
Sbjct: 1254 ETLKE 1258


>gi|304395690|ref|ZP_07377573.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356984|gb|EFM21348.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 224

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R    +    VF+A ++            P+ +++D  +    
Sbjct: 1   MTTVLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGL-IEAATRKPDLVILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   + + V  L    D +  IA   AGA+ +L KPF    L   +R   + 
Sbjct: 60  G-TDFIRDLRQWSAIPVIVLSARSDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRR 118

Query: 121 QKSKDENQF 129
              +  +  
Sbjct: 119 HSGQQPDAR 127


>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 232

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   LLL++    + ++ +      G+ V  +T+  E     + +   + +++D  +  +
Sbjct: 1   MKEKLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQP-FDLVLVDWMLPEM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                  ++R     +DV +  +    +    + G + GA+ ++ KPF+ E L+  +   
Sbjct: 60  DGLTVCQNIRWE---SDVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASH 115

Query: 118 PQMQKSKDENQFLDA 132
            +  +   +   ++ 
Sbjct: 116 LRRWRRYHKQDVIEE 130


>gi|288929070|ref|ZP_06422916.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288330054|gb|EFC68639.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 965

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ +  +      LF    + V  A++  EA      EL+P+ ++ D  M G+  
Sbjct: 714 QRMLIVEDNADLAAYMGSLFTPQ-YAVCYASNGEEALARA-TELVPDIIITDRMMPGMDG 771

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR   +   + +  +  ++  ++ + G +AGA++++ KPFN E L   +  L  
Sbjct: 772 LEVCKQVRASDVMNHIPIVVVTGKITEQERLEGIKAGADAYITKPFNSEELITRVENLLD 831

Query: 120 MQKSKDE 126
             +   E
Sbjct: 832 RHRKLRE 838


>gi|317047328|ref|YP_004114976.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948945|gb|ADU68420.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 224

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  + EA  +            P+ +++D  +    
Sbjct: 1   MTTILIVEDEKEIRRFVRLALEGEGLKIVEAEQLQRGL-IEAATRKPDLVILDLGLPDGD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              FI  VRQ    + + V  L    D +  IA   AGA+ +L KPF    L   +R   
Sbjct: 60  GNDFIREVRQ---WSSMPVIVLSARTDEQDKIAALDAGADDYLTKPFGIGELLARVRVAL 116

Query: 119 QMQKSKDENQFLD 131
           +  +    +  L 
Sbjct: 117 RRHQGSQPDPVLS 129


>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E E   + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLE-ENEIHLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
 gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
          Length = 220

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +  +        G  V       +A    E E  P+ +++D  + G+   
Sbjct: 2   KILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAE-EFKPDVVILDIMLPGLSGK 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D+ +  L    D +  +     GA+ +++KPF+ E L   ++ + + ++
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARRKE 120

Query: 123 SKDE 126
            K+E
Sbjct: 121 RKEE 124


>gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LV+    + +         G+ V        A E    E   + +++D  + G+  F
Sbjct: 7   RIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERC-DLIILDVMLPGMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   + V +  L    +    ++G  +GA+ +L KPFN       ++ + + 
Sbjct: 66  QVCKAMRELD--SRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRR 123


>gi|46581782|ref|YP_012590.1| transcriptional regulatory protein zraR [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|46451205|gb|AAS97850.1| transcriptional regulatory protein zraR [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232339|gb|ADP85193.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris RCH1]
          Length = 459

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD     R + R +   +G+   EA     A E   +E   + +++D  M  +   
Sbjct: 5   TVLIVDDDVAHRTMLRTMLRGWGYATDEADDGETAVEKV-REKARDAVLMDVRMARMGGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R +     V V  +      E  +   R GA  +L KP + + LR  +       +
Sbjct: 64  EALRRIVEYNPAVPVLIMTAYSSVETAVEALRLGAYDYLTKPLDFDVLRHTLERALDHTR 123

Query: 123 SKDENQFLDA 132
              EN+ L +
Sbjct: 124 LVSENRELKS 133


>gi|114047569|ref|YP_738119.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113889011|gb|ABI43062.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 4/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   + R          G  V  A +  E  +   +  +P+ +++D  M  + 
Sbjct: 1   MSRILLVDDDPLFRVWLTDALKTQGHEVECAINGIEGLKRI-RSFMPDIIMLDLIMPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F              +  L    + E  I     GA+ FL KPF+ + L   +  L + 
Sbjct: 60  GFSLL---EARDCMTPIMMLSARDNEEDRIRCYELGADDFLTKPFSIKELLVRLHALERR 116

Query: 121 QKSKDENQF 129
             S+   Q 
Sbjct: 117 LISRPPEQM 125


>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 223

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   +       + +V+D  +  +   
Sbjct: 2   RILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEG-HYLGDTEPYDAIVLDIGLPQMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 123 SKDENQF 129
               ++ 
Sbjct: 121 GHASSEL 127


>gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300076615|gb|ADJ66014.1| response regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESMEGVL 60
             +L+VD     R + +       + V  A          ++     + +++D  +    
Sbjct: 3   RKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPDTD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  + +   ++V V  L    D    + G   GA+ ++ KP++   L   ++ + + 
Sbjct: 63  GF-ALCKAVRRKSNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIHRR 121


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|218780745|ref|YP_002432063.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfatibacillum alkenivorans AK-01]
 gi|218762129|gb|ACL04595.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfatibacillum alkenivorans AK-01]
          Length = 368

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L VD      ++   +    G+  F+A S  EA +   +E  P+ +++D  M G    
Sbjct: 6   RVLAVDDEERNLRLMEAMLLPMGYEFFKAHSGEEALDIV-RETPPDVVLLDIMMPGVNGF 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  +    + +  +    AGA+ FL KP ++  L+  +    ++
Sbjct: 65  EVARRLKANEDTRIIPIIMVTALKEVDDRVKALDAGADDFLTKPVDKLELKARVANSLKI 124

Query: 121 QKSKDENQ 128
           +   D  +
Sbjct: 125 KAYNDHMR 132


>gi|17351926|gb|AAL38199.1|AF319443_1 putative response regulator RR23 [Listeria monocytogenes]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 1/111 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  H     GF V EA+   EA E   +    +  VID  M  + 
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEA-EKIVETEQVHLAVIDVMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
            F    +      D+ V  L  +        G   G + ++ KPF  E L 
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELI 110


>gi|77359900|ref|YP_339475.1| response regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874811|emb|CAI86032.1| putative response regulator [Pseudoalteromonas haloplanktis TAC125]
          Length = 549

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   + R + + L    G+ V  A +   A +    +   + +++D  M  + 
Sbjct: 1   MMHILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKIL-SQTPIDIVLLDVVMPIMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++Q      + + ++    D          G + F+ KPF +  L   ++   
Sbjct: 60  GFETAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKVILHAKIKAHC 119

Query: 119 QMQKSKDE 126
           + ++   +
Sbjct: 120 RTRELSKK 127


>gi|197119775|ref|YP_002140202.1| sigma-54-dependent transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197089135|gb|ACH40406.1| sigma-54-dependent transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 453

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D    +R+V  +     G+ V+ A       +    E LP  ++ D  M G    
Sbjct: 4   KILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLF-AERLPAVVITDLKMPGKSGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E ++ +++        V  L      +  +   + GA  +L KPFNRE L+  + +  Q+
Sbjct: 63  EVLSAIKESS--PATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120

Query: 121 QKSKDENQFLDA 132
           Q   +EN+ L  
Sbjct: 121 QGLSEENRLLKE 132


>gi|222054470|ref|YP_002536832.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221563759|gb|ACM19731.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. FRC-32]
          Length = 456

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  H++R          G+ VF A +  +A     +E  P  +++D  + G+  
Sbjct: 4   TRILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLV-REEQPELVLLDIQLPGIGG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +      ++ V  L      E  +   R GA  ++ KPFN + L   +++  +  
Sbjct: 63  LEVLEKVKEFDDEIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALETS 122

Query: 122 KSKDENQFLDA 132
             + E   L +
Sbjct: 123 DLRREVVQLRS 133


>gi|15896015|ref|NP_349364.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025797|gb|AAK80704.1|AE007774_1 Response regulator (CheY receiver domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325510169|gb|ADZ21805.1| Response regulator (CheY receiver domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           S+++VD    + +  +      GF V+ A +  +A     ++L PN +++D  +  +   
Sbjct: 10  SIMVVDDEEHIVEFLKMGLEAEGFTVYTAFNGNDAV-IYSRKLNPNLIILDVMLPYMNGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  + +++    +++ +  L  + + +  + G   GA+ +++KPF+ + L   +    + 
Sbjct: 69  EVCSLIKK---ASNIPIIMLTAKDEIDDKVLGLNLGADDYMIKPFSFKELLARINARLRN 125

Query: 121 QKSKDENQ 128
             S+  N+
Sbjct: 126 SFSETLNK 133


>gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     EK     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++    +V V  L  + D E  ++G R GA+ +L KPF    L   +  L +
Sbjct: 61  NGF-QVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|237722197|ref|ZP_04552678.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448007|gb|EEO53798.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1409

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R   R + ++  + V EA +  EA        + ++++ D  M  +   
Sbjct: 1157 TILVVEDNVDMRGYIRSILHEH-YNVLEAANGEEALHILNSNPV-DFIISDLMMPVMDGI 1214

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  +   R G + +LLKPF+   L   ++ + + 
Sbjct: 1215 ELSRRVKDAFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILEN 1274

Query: 121  QKSKDE 126
            +K    
Sbjct: 1275 RKRYQR 1280


>gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 239

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +         + G+    A     A +  +K L P+ +++D  +  +  
Sbjct: 12  RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADK-LHPDLIIMDLMLPVMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R       + V  L    D   ++ G   GA+ ++ KPF+   L    R L + 
Sbjct: 71  IEATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRR 128


>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|160894157|ref|ZP_02074935.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50]
 gi|156864190|gb|EDO57621.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A         P  +++D  +  
Sbjct: 1   MNKPLILVVEDDPSVRNLITTTLKTNDYRYVVAPNGSAAIMEATSHN-PEIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  ++ +   ++V +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IQVIQTVRSWSNVPIIVISARSEDNDKIKALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+++    +         + GF V  A +  +       E + + +V+D  +      
Sbjct: 2   RILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAV-DLIVLDMMLPLLSGW 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R       + V  L    + E  + G   GA+ +L+KPF    L   +R L + 
Sbjct: 61  ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120

Query: 121 QKSKDEN 127
              +DE+
Sbjct: 121 SPVRDED 127


>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
 gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
          Length = 1346

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LL +   + R +   L    G  V+ A+   EA      +   + +++D  M  +  
Sbjct: 1208 RRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAY-DAILMDVQMPELDG 1266

Query: 62   F--IAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                  +R +MP     +V  L   V  +       AG ++FL KP  ++ L  A+
Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322



 Score = 63.7 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 26/132 (19%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V  +   R + R     +G       S  EA +  + +      +IDE +  +    
Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133

Query: 62   FIAHVRQMPLGTDVFVYY----------LLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
                +R+   GT++ V            L                    L KP  + +L 
Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSSLH 1179

Query: 112  FAMRELPQMQKS 123
              +  L   +++
Sbjct: 1180 DTLTALLTGREN 1191


>gi|29346391|ref|NP_809894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568209|ref|ZP_04845620.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29338286|gb|AAO76088.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251842282|gb|EES70362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1472

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1216 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1273

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1274 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLGE 1333

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1334 RKLFRERIRQQMENQ 1348


>gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   ++ ++        G  V                   + +V+D  M  + 
Sbjct: 1   MSRVLLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQY-DVVVLDSMMPKMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +   + + +  L  + D    I G   GA+ ++ KP     L   +  + + 
Sbjct: 60  GL-DVLKTVRTQSSIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRR 118

Query: 121 -QKSKDENQFLDAI 133
            Q + D+N   ++I
Sbjct: 119 AQHTHDQNNISNSI 132


>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 230

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + K+     +  GF    A S  EA     KE   +++++D  M G+  
Sbjct: 3   KKILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCAL-KENHIDFIILDIMMPGMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +  + +L         I G   GA+ ++ KPF+ + L   +R   +
Sbjct: 62  LDVCRSIRNS---YNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118

Query: 120 M 120
            
Sbjct: 119 K 119


>gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 929

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD  +      +      G  +  A    E  E  +     + +++D  M  +  
Sbjct: 790 KNILIVDDDNRNIYALKTALEKRGMHILVAKDGLECLEVLQANPDIDLVLMDIMMPNMDG 849

Query: 62  FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           + A   +RQ     D+ +  L  +          +AGA+ ++ KP N + L   +R   
Sbjct: 850 YEAMTIIRQQMKRIDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 908


>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL++    + ++ R       F +    S  +  E    E   + +++D  +    
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEH-FDLVILDIMLPKVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHL 116

Query: 119 QMQKSKDENQ 128
              +   + Q
Sbjct: 117 ARYERLSDKQ 126


>gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 367

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    + +  +    D GF++  A    EA     KEL P+ +++D  + G    E
Sbjct: 150 ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLA-KELNPSIIILDIMLPGINGYE 208

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             + +++     +  +  L  + D +  + G   GA+ +++KPF+ + L   +    +
Sbjct: 209 VCSEIKK---WVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR 263


>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ + EA    EA    E E   + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 MESR 120


>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+                G+    A    +       E   +  V+D  + G+ 
Sbjct: 1   MK-ILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESC-DLAVVDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +    G  + V  L      +  I   + G + +L+KPF+   L   ++ L + 
Sbjct: 59  GFTLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRR 118

Query: 121 QKSKDE 126
             +  E
Sbjct: 119 ASATAE 124


>gi|126730082|ref|ZP_01745894.1| response regulator [Sagittula stellata E-37]
 gi|126709462|gb|EBA08516.1| response regulator [Sagittula stellata E-37]
          Length = 421

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S +  K+   +   +GF V  ATS  EA   C  E  P+ ++ D  M G+  
Sbjct: 17  RRVLVVDDSQLQLKIVGLVLARWGFEVLTATSGPEALRIC-AETPPDLVLSDWMMPGMDG 75

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
                  R +      +   L  + +   +  G  AGA+ FL KP N   LR  +     
Sbjct: 76  LELCRRFRALDREKYGYFILLTSKSEKGDVAQGLDAGADDFLTKPVNNHELRARINAGER 135

Query: 117 LPQMQKSKD-ENQFLD 131
           L  MQ+    +N+ L 
Sbjct: 136 LLAMQRELSVKNRHLS 151


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    +A +        + +++D  M     
Sbjct: 20  KNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMI-STYEVDLMILDIMMPKRNG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 79  LEVCQEVREN---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLR 135

Query: 120 M 120
            
Sbjct: 136 R 136


>gi|320354178|ref|YP_004195517.1| Fis family two component sigma54 specific transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122680|gb|ADW18226.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobulbus propionicus DSM 2032]
          Length = 465

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL++D    +R +   + +  G+ V  A       +        + ++ D  M G+  
Sbjct: 5   QRLLIIDDEENMRHMLTSVLSRLGYQVEVAAHGQAGLDALATGD-FDVVLCDIRMPGMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                + +  G    +  +      +  +A  R GA  ++ KPF  E +   +R+  + +
Sbjct: 64  LEFLRQAIAAGISATIIMMSAFGSVDTALAAMRLGAYDYISKPFKAEEIELTLRKAEERE 123

Query: 122 KSKDENQFL 130
             +  N+ L
Sbjct: 124 GLRRANREL 132


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +V +      G+ V    +  E  E   +    + +++D  + G+    
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGH-SLVLLDVMLPGLSGLE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R         V  L         + G   GAN ++ KPF  E L   +R   +   +
Sbjct: 65  VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124

Query: 124 KDEN 127
           K E+
Sbjct: 125 KTED 128


>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
 gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
          Length = 1346

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LL +   + R +   L    G  V+ A+   EA      +   + +++D  M  +  
Sbjct: 1208 RRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAY-DAILMDVQMPELDG 1266

Query: 62   F--IAHVR-QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                  +R +MP     +V  L   V  +       AG ++FL KP  ++ L  A+
Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322



 Score = 62.9 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 26/132 (19%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V  +   R + R     +G       S  EA +  + +      +IDE +  +    
Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133

Query: 62   FIAHVRQMPLGTDVFVYY----------LLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
                +R+   GT++ V            L                    L KP  +  L 
Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR--------------LHKPIKQSNLH 1179

Query: 112  FAMRELPQMQKS 123
              +  L   +++
Sbjct: 1180 DTLTALLTGREN 1191


>gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A +  E      +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKD 125
           +  + + 
Sbjct: 117 RRGERES 123


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 5/119 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +LL + + + +++   L   FG  V  A +  +A     +    + +++D  M  +  F 
Sbjct: 1472 ILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAV-AASEMKDFDLILMDVQMPHMGGFE 1530

Query: 64   A----HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A     +R+  +     +  +      +       AG + +L KP N + LR  + +  
Sbjct: 1531 ATSTIRIREKVMNKHTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPDQLRAVIEKYL 1589



 Score = 67.5 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEGVL 60
            L++D +   R+V   + +++G       S   A         K+    Y+ +D  + G  
Sbjct: 1329 LIIDDNKSTRRVLHQMLSEYGVSADTTDSQDSAFHMLREAAMKKQPYEYIFMDAQLNGKD 1388

Query: 61   EFI--AHVRQMPLGTDVFVYYL---LM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             F+    ++Q P      +  L        D E   +      + +L KP +   +   +
Sbjct: 1389 GFLVAEAIKQDPSFGQASIIMLICGSGQRGDPENRSSVI----SGYLSKPVSPVEMLEVI 1444

Query: 115  R 115
            +
Sbjct: 1445 Q 1445


>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 236

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|255598170|ref|XP_002536943.1| sensory transduction histidine kinase, putative [Ricinus communis]
 gi|223518029|gb|EEF25440.1| sensory transduction histidine kinase, putative [Ricinus communis]
          Length = 262

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD +   +++   L    GF V  A    +  +       P+ +++D  M  +  F
Sbjct: 15  RILIVDDTPEQQRILLELLRSSGFNVTLAFDGHQGYQRALSSK-PDLILLDVRMARMDGF 73

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                ++      D+ V +L      ++ I G + G   ++ KPF  E +   +    
Sbjct: 74  ATCRLLKADAATHDIPVIFLTAAGAPDERINGLKMGGVDYISKPFVPEEVIARINIHL 131


>gi|253699010|ref|YP_003020199.1| response regulator receiver protein [Geobacter sp. M21]
 gi|251773860|gb|ACT16441.1| response regulator receiver protein [Geobacter sp. M21]
          Length = 204

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD +     +   +     + V  A S  EA      E LP+ +++D  M  +  
Sbjct: 4   KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEAL-LALAENLPDLILLDVMMPEMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      D+ V ++    D      G  AGA  +L KP N   L   +    +
Sbjct: 62  LEVCRILKDDSRYRDIPVIFITALSDEVDESRGFEAGAVDYLSKPVNPVILSHRVAVHLE 121

Query: 120 MQKSKDENQF 129
           +Q  K+    
Sbjct: 122 LQSQKEALAR 131


>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +           G  V  AT      E     L  +++++D ++  +  F
Sbjct: 2   RILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELA-ASLAFDFILLDVNLPDMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G+ + +  +    +    I G + GA+ +L KPF  E L   M  + + 
Sbjct: 61  EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRR 118


>gi|78223839|ref|YP_385586.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15]
 gi|78195094|gb|ABB32861.1| GAF sensor hybrid histidine kinase [Geobacter metallireducens GS-15]
          Length = 1216

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  +   +V EA +  EA E    E   + +++D  M  +  
Sbjct: 1095 KKVLIVDDDMRNIFSLSSVLAEKKMIVLEAENGREALERLNGEPGIDVVLMDIMMPEMDG 1154

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+ P    + +  L  +          +AGA+ ++ KP + + L   +R   
Sbjct: 1155 FAATRAIRKDPRFARLPIIALTAKAMKGDRDECLKAGASDYIQKPVDADKLLSLLRVWL 1213



 Score = 88.3 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 17/145 (11%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60
            S+L+++       +   +  D GF    A          +   LP+ +V+D  +  +  
Sbjct: 827 RSILIIEDDLSFAAILMDMVRDRGFPAMVAGDGESGIALAD-HYLPSAIVLDVMLPHIDG 885

Query: 61  -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET---------- 109
              +  ++       + V++L      E        GA  F+ KP N             
Sbjct: 886 WGVMKCLKDSLRTRHIPVHFLTCL---EDRQKALTMGAIGFVTKPVNSAQLDEVFSTIEH 942

Query: 110 -LRFAMRELPQMQKSKDENQFLDAI 133
            L  ++R+L  ++  ++E + ++A+
Sbjct: 943 SLAKSVRKLLIVEDDRNEAKSMEAL 967



 Score = 60.2 bits (146), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V+      K    L       +    +  EA      E   + +V+D  +  +  
Sbjct: 949  RKLLIVEDDRNEAKSMEALLGVRDVAITVTATGSEAMGLLAVEP-FDCIVLDLGLSDMSG 1007

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEV-DFEKMIA 91
            F  +  ++ +     + V          E    
Sbjct: 1008 FEVLEKIQSLDESRRIPVIIHSGRDLSREDEQR 1040


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   +      +L  +  + V  AT    A + C +    + +++D  +  + 
Sbjct: 1   MK-ILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWD-CIQAYDYDLILLDVVLPKLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R   L   + +  +       +   G  AGA+ +L+KPF+ E L   +R L 
Sbjct: 59  GISLCRKIRSNNL--QMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118



 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    ++ + + L + +G       +  +  E  E  + P+ L++D  +     
Sbjct: 396 TKILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEA-VAPDMLILDVELPYING 454

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR     +++ + +L +  D E +      GA+ F+ KP     L   +    +
Sbjct: 455 IELCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLE 514

Query: 120 MQKSKDE 126
             K +  
Sbjct: 515 RMKLRQR 521


>gi|332530116|ref|ZP_08406066.1| multi-sensor signal transduction histidine kinase [Hylemonella
           gracilis ATCC 19624]
 gi|332040589|gb|EGI76965.1| multi-sensor signal transduction histidine kinase [Hylemonella
           gracilis ATCC 19624]
          Length = 487

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D S  +R +   L    G+ V  A +  +  +    E  P+ +++D  + G+   
Sbjct: 11  RILVIDDSPEIRLLATVLLEREGYEVSSADNGEDGVKRA-TETAPDLILLDVMLPGMDGY 69

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q     D+ V ++  + D      G  AG   ++ KP +   L   +R    +
Sbjct: 70  EVCRWLKQSEALRDIPVIFMSAQDDVPAQTQGFTAGGADYVTKPLSVPVLLARVRTHVAL 129

Query: 121 QKSKDENQ 128
              +   +
Sbjct: 130 HAQRRSLE 137


>gi|330821548|ref|YP_004350410.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373543|gb|AEA64898.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 239

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+VD    +R++ +    + G+ V  A    +  +   +    + +V+D  ++G  
Sbjct: 1   MDHILVVDDDPHIRQLLQDYLREMGYQVQVAADGAQ-MKQILRRASIDLVVLDLMLDGED 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R +     V +  L         I G   GA+ +L KPF+   L   ++ + + 
Sbjct: 60  GLDLT-RDLRREQGVPIIILSARGGLLDRILGLEMGADDYLPKPFDPRELVAKIKVVLRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 TRA 121


>gi|317486963|ref|ZP_07945773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921838|gb|EFV43114.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 358

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++   L     + V  AT+   A      E  P+ +++D  M  +    
Sbjct: 2   VLVVDDTIANIRILDDLLRGE-YTVRVATNGATALRLALSEPRPDIVLLDIMMPDMDGYE 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  PL +++ V ++    + E    G   GA  F+ KPF    +R  +     ++
Sbjct: 61  VCRRLKSDPLTSNIAVVFITAMGNEEHEAKGLDLGAVDFIAKPFQPRLVRARVSNHVALK 120

Query: 122 KSKDENQFL 130
           K  DE   L
Sbjct: 121 KYNDELNSL 129


>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 837

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+     R V R +   FG+ V  A     A E        + +++D  M  +  
Sbjct: 710 RRILLVEDEETNRDVARRMLEKFGWDVTVAADGQAAVEQVFANH-FDCILMDIQMPVMDG 768

Query: 62  F--IAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                 +R    +     + +  +               G + ++ KPF    LR  + +
Sbjct: 769 VAATRLIRTAVPLGEKRAIPIIAMTAYAMSGDREKFLACGMDEYISKPFEHTDLRAVVEK 828

Query: 117 LPQMQ 121
               +
Sbjct: 829 ALARR 833


>gi|262173236|ref|ZP_06040913.1| chemotaxis regulator CheY [Vibrio mimicus MB-451]
 gi|261890594|gb|EEY36581.1| chemotaxis regulator CheY [Vibrio mimicus MB-451]
          Length = 119

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  AT   +A    +K    + ++ D +M  + 
Sbjct: 1   MARVLAVDDSISIRQMVSHTLQDAGYEVETATDGRDALTKAQKS-RFDVIISDVNMPVMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  VR         +  L  E   EK   G   GA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFEFVKAVRLQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119


>gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 228

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 7   RILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 66  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 122

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 123 QQYLQENEL 131


>gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB900]
          Length = 223

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 2   RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 118 QQYLQENEL 126


>gi|255037400|ref|YP_003088021.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950156|gb|ACT94856.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +LLLV+    +  + +    D GF    AT   +  +    +   +  + D  M    
Sbjct: 1   MPNLLLVEDDANLGMLLQEYLTDKGFPTDLATDGQKGWQHFV-DKQYDLCIFDVMMPKKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F         G DV + +L  +   E  + G R GA+ ++ KPF+RE L   ++ + + 
Sbjct: 60  GFSLAKEVRMSGRDVPIIFLTAKSMKEDTMQGFRVGADDYVTKPFDREELLMRIQAILRR 119

Query: 121 QKSKDENQ 128
              + + Q
Sbjct: 120 YTRQTDVQ 127


>gi|257059911|ref|YP_003137799.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|256590077|gb|ACV00964.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 481

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+      K+  ++  D G+ V +A     A         P+ +++D  +  +    
Sbjct: 11  ILVVEDQLDNLKLLSNILWDEGYQVRQAIDGEMAL-IAIDTKYPDLILLDIKIPRLDGYQ 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V +L    +  + +     GA  ++ KP+    +   +    ++ 
Sbjct: 70  LCQTLKAKETTANIPVIFLSAFDELWEKVKAFEMGAVDYITKPYQAPEVLARVENQVKLS 129

Query: 122 KSKDENQ 128
             + + +
Sbjct: 130 LLQKQLK 136


>gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
 gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +     +L    GF V        A    ++    + +++D  + G  
Sbjct: 1   MTQILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGA-DLVLLDLMLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +RQ    ++V +  L  +      + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTEVCKQIRQR---SNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVL 116

Query: 119 QMQKSKDEN 127
           + +   +E 
Sbjct: 117 RRRAEPEEL 125


>gi|78224120|ref|YP_385867.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Geobacter metallireducens GS-15]
 gi|78195375|gb|ABB33142.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter metallireducens GS-15]
          Length = 470

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD   ++R+  R +    GF V  + S   A E  ++E   + ++ D  M G+  +E
Sbjct: 6   VLVVDDEAVIREGLRRILEKEGFHVETSASGQIALERMQEEN-FSLVITDLKMPGMSGME 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++ +    +V V  +      +  +   + GA  ++ KPF  E +   +R+    +
Sbjct: 65  VLKAIKVLQ--PEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPEQITEKVRKALDQR 122

Query: 122 KSKDENQFLD 131
               EN FL 
Sbjct: 123 AVLIENIFLK 132


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G+ V       +  E    E   + +++D  + G  
Sbjct: 1   MQHILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAAL-ETNYDLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      +  +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GIEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDENQFLDAI 133
           + ++ + EN+ + ++
Sbjct: 117 RREE-QIENKHVSSL 130


>gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
 gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+VD    +R + R      G  + EA    +A E C++    + +++D  M  + 
Sbjct: 1   MSKLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEY-DLIIMDIMMPNLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + V+++       V  L    +    I G   G + +++KPF+ + L   +  + + 
Sbjct: 60  GF-SAVKEIRKDVQTPVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILKR 118

Query: 121 QK 122
             
Sbjct: 119 YH 120


>gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD++L+V     +R V      + G+ V EA +  EA +   + +    +++D  +  + 
Sbjct: 1   MDTILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLI-RSISFELVILDSMLPQMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++   + ++  +  L  + +    I G   GA+ +++KPFN   L   ++   Q 
Sbjct: 60  GINACIKIREI-SNTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQR 118

Query: 121 QKSKDENQF 129
           Q    + +F
Sbjct: 119 QSLIGKEEF 127


>gi|291568744|dbj|BAI91016.1| two-component response regulator (OmpR subfamily) [Arthrospira
           platensis NIES-39]
          Length = 253

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVC--EAREFCEKELLPNYLVIDESMEG 58
           M  +L++D    + ++        G+ V  A      +A    +       L +      
Sbjct: 1   MPRILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQAL-ALQLLPDLIILDLMLPKVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     ++ V  L      +  + G  AGA+ +L KPF  E +   +R L 
Sbjct: 60  GFTVCQRLRRDERTGEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 230

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    +           GF    A S  +  +    +   + L++D  +    
Sbjct: 1   MSRILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQN-FDLLILDLGLPDRD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R       + +  L    D    +AG  AGA+ ++ KPF    L   +R   
Sbjct: 60  GFQILKELRGQGET--LPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARL 117

Query: 119 QMQ--KSKDENQFLD 131
           + Q  K  D+N+ L 
Sbjct: 118 RNQTGKPADDNKTLS 132


>gi|239907600|ref|YP_002954341.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239797466|dbj|BAH76455.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 374

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 13/143 (9%)

Query: 1   MDS-----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDES 55
           M +     +LLVD +     +           V  AT    A     KE  P+ +++D  
Sbjct: 1   MKTLAECLILLVDDTETNLDILVDAL-GEDHEVAVATDGPTALALA-KEQTPDLILLDIM 58

Query: 56  MEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           M G+        +   P   +  V +L    D      G   G   ++ KPF    ++  
Sbjct: 59  MPGMDGYEVCRRLMADPATAETPVIFLTALTDVADKTRGFAVGGVDYVTKPFEPAEIKAR 118

Query: 114 MREL----PQMQKSKDENQFLDA 132
            R         Q+   +N+ L+ 
Sbjct: 119 ARTHLSLRLARQELARQNEILEE 141


>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 226

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V +      G+    A +  EA E        + +++D  +  +   
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFL-NSSWDLILLDVMLPNISGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L         ++G   GA+ ++ KPF  E L   +R   ++  
Sbjct: 63  EVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISH 122

Query: 123 SKDENQ 128
           +  E +
Sbjct: 123 AIKEEE 128


>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
 gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 233

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|218549739|ref|YP_002383530.1| DNA-binding transcriptional activator KdpE [Escherichia fergusonii
           ATCC 35469]
 gi|218357280|emb|CAQ89915.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia fergusonii ATCC 35469]
          Length = 225

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|157373042|ref|YP_001481031.1| DNA-binding transcriptional regulator CpxR [Serratia proteamaculans
           568]
 gi|270265194|ref|ZP_06193456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|157324806|gb|ABV43903.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|270040828|gb|EFA13930.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 232

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF +  A    +A    +  +    L I    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFTIVVAYDGEQALSLLDSSIDLLLLDIMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 118 SNWSEQQQNVD 128


>gi|73540096|ref|YP_294616.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72117509|gb|AAZ59772.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 237

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + ++++D    +R + +    D GF V       +  +   +    + LV+D  ME    
Sbjct: 5   NRIIVLDDEAELRNMLQRFLTDHGFRVRAVADGKQ-LDRHLQREPHDLLVLDLMMEPEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + +  L  + D    +AG   GA+ +L KPF  + L   +R L + Q
Sbjct: 64  LTICRRLRAEGHTLPILMLTAKGDPMDRVAGLETGADDYLAKPFVPDELVARIRALLRRQ 123

Query: 122 KSKD 125
           K   
Sbjct: 124 KMAA 127


>gi|83311728|ref|YP_421992.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946569|dbj|BAE51433.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 278

 Score =  133 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +VD    +R + R +   +G+ V    S   AR+   ++  P+  ++D  +  +  
Sbjct: 45  KRIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDP-PDLCIVDLGLPDMDG 103

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR++       V  L         + G   GA+ +++KPF    L   +  + + +
Sbjct: 104 LT-LVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRR 162

Query: 122 KSKD 125
               
Sbjct: 163 DQLA 166


>gi|295394889|ref|ZP_06805102.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972222|gb|EFG48084.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 266

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           ++LV+   ++R+  +     FG+ V       +  EF   +   + +++D  +  +    
Sbjct: 3   IVLVEDDEVIRETTQLALERFGYTVTGFEDGRDGYEFIASQGA-DVVLLDLMLPTMNGAS 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    ++V +  +    +   ++    AGA+ +L KPF+ + L   +R + + 
Sbjct: 62  ITRAIRER---SNVPIIVISARSEPIDIVQALEAGADDYLTKPFDMQVLNARIRTVVRR 117


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +    +     + V          ++    +  + +++D  +  +  F
Sbjct: 2   RILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIY-DLIILDIMLPKLNGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                         + +L  + +    + G   GA+ +L KPF  E L   +R L + Q
Sbjct: 61  DILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQ 119


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ + +              G+ +  A    +A +  + E  PN +++D  M G+    
Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSES-PNLILMDIQMPGIDGLE 1719

Query: 64   A--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            A   +RQ+   + V +  L              AGAN ++ KP   + L   ++E+ 
Sbjct: 1720 AINRIRQITTMSQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEIL 1776


>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 226

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     +   + V    S  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 233

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++    + ++ R       F V    S     +   +E   + +++D  +  +  
Sbjct: 6   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMNG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++    
Sbjct: 65  FEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 121

Query: 120 MQK 122
             +
Sbjct: 122 RYE 124


>gi|319426431|gb|ADV54505.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 226

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 4/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   + R          G  V  A +  +           + +++D  M  + 
Sbjct: 1   MSKILLVDDDPLFRTWLADALIAHGHEVECAANGLDGLNRIRAG-FADVIMLDLVMPQMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++         V  L      +  I G   GA+ FL KPF+ + L   +  L + 
Sbjct: 60  GF-EVLKARE--CSTPVMMLSARDSEDDRIMGYELGADDFLSKPFSIKELIVRLGALERR 116

Query: 121 QKSKDENQ 128
             S    Q
Sbjct: 117 LHSHRIMQ 124


>gi|262382621|ref|ZP_06075758.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_33B]
 gi|262295499|gb|EEY83430.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_33B]
          Length = 622

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D S  +R   RH+F    + V EA +  E  E    E  P++++ D  M     
Sbjct: 368 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 425

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +P    V V  L  +V+ E +IAG   GA+ ++ KPF+ E LR  +  L +
Sbjct: 426 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 485

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 486 RR---DEMRR 492


>gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    +R   R      G+ V EA +  EA +  +++      ++D  + G+  F
Sbjct: 2   KVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLADQQTDIVIAILDVMLPGIDGF 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ- 121
               +       + +  L  +      + G   GA+ ++ KPF+   L   ++ L +   
Sbjct: 62  EVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRRLT 121

Query: 122 ---KSKDENQ 128
              +++D+N+
Sbjct: 122 PIPEAEDKNE 131


>gi|89889387|ref|ZP_01200898.1| two component system response regulator [Flavobacteria bacterium
           BBFL7]
 gi|89517660|gb|EAS20316.1| two component system response regulator [Flavobacteria bacterium
           BBFL7]
          Length = 229

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL +    +  + +      G+ V    +  EA +  E++  P+  V+D  M  +  F
Sbjct: 7   NILLAEDEPALGLIVKESLETRGYEVNHCHNGIEAYQSFEQQT-PDIAVLDVMMPELDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   +   + + +L  +   E ++ G   G N +L KPF+ E L   ++ L   Q+
Sbjct: 66  SLAKKIRTVNEQMPIIFLTAKSQTEDVLEGFHVGGNDYLKKPFSMEELIVRIKNLLSRQQ 125

Query: 123 SKD 125
           ++ 
Sbjct: 126 TQQ 128


>gi|50085580|ref|YP_047090.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
 gi|49531556|emb|CAG69268.1| putative two-component response regulator protein [Acinetobacter
           sp. ADP1]
          Length = 320

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       +     +  G+ V   T    A E   +  LP+ +++D +M  +  F 
Sbjct: 19  ILIVDDVPENLGLLHESLDQAGYRVLVTTDGLSAIEIAHR-CLPDMILLDGNMPHMDGFE 77

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P+   + V ++    + E ++ G + G   ++ KP N E +   ++      
Sbjct: 78  SCLQLKASPITQLIPVIFMTGLSETEHIVKGFQVGGVDYVTKPLNIEEVLARVKTHLAHA 137

Query: 122 K-SKDENQFLDA 132
           K  + + Q +DA
Sbjct: 138 KLLQQQKQVIDA 149


>gi|153212561|ref|ZP_01948308.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
 gi|229521757|ref|ZP_04411175.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TM 11079-80]
 gi|254225418|ref|ZP_04919029.1| transcriptional regulator CpxR [Vibrio cholerae V51]
 gi|297581527|ref|ZP_06943450.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
 gi|124116432|gb|EAY35252.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
 gi|125622052|gb|EAZ50375.1| transcriptional regulator CpxR [Vibrio cholerae V51]
 gi|229341351|gb|EEO06355.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TM 11079-80]
 gi|297534365|gb|EFH73203.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
          Length = 228

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + +A            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|320353940|ref|YP_004195279.1| Fis family two component sigma54 specific transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122442|gb|ADW17988.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfobulbus propionicus DSM 2032]
          Length = 462

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD     + V   L  D G+ VF A S            L + ++ D  M G+ 
Sbjct: 1   MHTILVVDDEPNYQIVLSELLKDEGYEVFTADSGLAGLPIVYSTDL-DLVLSDMKMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      ++ V  +    + EK +   R GA ++L KPF+   L  ++ +  + 
Sbjct: 60  GIEFLGKIKEYNRELPVILITAYAEVEKAVEAMRLGAFTYLAKPFSNTQLLASVTKAIEH 119

Query: 121 QKSKDENQFLDA 132
                E + L A
Sbjct: 120 YGLIREIRRLRA 131


>gi|317483795|ref|ZP_07942735.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924898|gb|EFV46044.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 236

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD    +R++       +   V  A       E  +     + +++D  + G   
Sbjct: 5   TRLLVVDDDADIRELLSAYLARYDMTVETAADGAGLFEKLD-HAHFDLIILDIMLPGEDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + + V +L         + G   GA+ +++KPF+   L   +R + +
Sbjct: 64  LSLCRRLR---GTSAIPVIFLTSLDSSTDRVVGLELGADDYVVKPFDPRELLARIRTVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|312886856|ref|ZP_07746462.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311300683|gb|EFQ77746.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1463

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 4/121 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +LLV+ ++ +R       +   + V  A +  E  +     LLP+ ++ D  M  +    
Sbjct: 1210 VLLVEDNNDLRMFLAAQLSSL-YRVEVAENGQEGLQKAI-NLLPDLVLSDVMMPKMDGIQ 1267

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             +  ++   L + + V  L  +   E  I G + GA+S++ KPF+   L  ++  L + +
Sbjct: 1268 MLDELKNNILTSHIPVVLLSAKFSIENQIEGLKYGADSYITKPFDNGFLLASIENLIRQR 1327

Query: 122  K 122
            K
Sbjct: 1328 K 1328


>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF+V  AT    A +  E    P+ L++D  + G   
Sbjct: 19  RRVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEA-WQPDLLILDIMLPGFDG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    D   M+ G   GA+ ++ KPF+   L   +  L +
Sbjct: 78  LEVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 134

Query: 120 MQKSKD 125
             +   
Sbjct: 135 RVERAA 140


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++         F V+ A S  EA     +E+ P+  ++D  M G+  F
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIA-REVNPDAYILDVMMPGMDGF 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D  V YL  +   ++ I G   GA+ ++ KPF+ E +   +R + +   
Sbjct: 67  ELLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGG 126

Query: 123 SKDE 126
           + +E
Sbjct: 127 AAEE 130


>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 236

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATY-DLIVLDIMIPGINGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|227327463|ref|ZP_03831487.1| two-component system regulatory protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 229

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V        G+ V  A+              P+ +++D  +  +  
Sbjct: 4   KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQRGLHMALTSK-PDLILLDVMLPKMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              ++ +RQ    +++ V  +    D  + I   R GA+ +++KP+N + +   ++ + +
Sbjct: 63  SEVLSALRQR---SNIPVIMVTAIGDDPERIGALRYGADDYVVKPYNPQEVVARVQAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A +  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGERESTD 125


>gi|171912783|ref|ZP_02928253.1| two component, sigma54 specific, transcriptional regulator, Fis
           family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 488

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D +     +  ++    G+ +   ++  +A +   K   P+ +++D  M G   
Sbjct: 4   QRILIADDTPASLSLISNVLEPRGYEILAVSNGRDALQLAPKAK-PDLILLDVMMPGQDG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      ++ V ++    + E ++ G + GA  ++ KPF  + +   +    +
Sbjct: 63  FMVCRELKAADETRNIPVIFVTSRNEIESVVRGFQVGAVDYIYKPFQAQEVVTRVATHLK 122

Query: 120 M----QKSKDENQFLD 131
           +    ++ +  N  L+
Sbjct: 123 LSLLTRELQQRNDELE 138


>gi|170744479|ref|YP_001773134.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168198753|gb|ACA20700.1| GAF sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1937

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLVD                G  V  A +  +     +     + +++D  M  +  +
Sbjct: 1795 RILLVDDDVRNIFSLTSALELHGLDVLFAENGRDGIALLKANPSIDAMLVDIMMPEMDGY 1854

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+      + +  +  +           AGA+ ++ KP + + L   +R   + 
Sbjct: 1855 ETMREIRRDERFRALPLIAVTAKAMKGDREKCMEAGASDYVSKPVDLDQLLAVLRVQLEQ 1914

Query: 121  QK 122
            ++
Sbjct: 1915 RR 1916



 Score = 97.2 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 6/115 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+   +   V   L  + GF    A     A     +   P+ + +D  +  +    
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAAALALAHR-YKPHAITLDIGLPDMDGWA 1588

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
             + H++       + ++ + +  +      G RAGA  FL KP +RE L  A+  
Sbjct: 1589 LLDHLKNDVRTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVDREGLLRALER 1640



 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             SLLLV+     R     L ++    VF  ++              +  ++D  +   G 
Sbjct: 1650 RSLLLVEDDDNQRASITALLSEEDVKVFSVSTAAA-ALEAVAGGRFDCAIVDLGLPDLGG 1708

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLK 103
             E I  +R  P G ++ +         E      +  A++ +LK
Sbjct: 1709 SELIEQIRATPDGEELPIIVYTGRELTEAEEQQLKQTASTIILK 1752


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    +  + ++     G+ V  A+   E      +   P+ +V+D  +     
Sbjct: 3   KKILVVDDEQSIVTLLQYNLERSGYDVITASDGEE-ALELAENENPDLIVLDVMLPKVDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           ++    +RQ  +   V +  L  + +    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  IDVCKQLRQQKMM--VPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILR 119

Query: 120 MQKSKDENQ 128
                  +Q
Sbjct: 120 RADISSLSQ 128


>gi|170724537|ref|YP_001758563.1| response regulator receiver protein [Shewanella woodyi ATCC 51908]
 gi|169809884|gb|ACA84468.1| response regulator receiver protein [Shewanella woodyi ATCC 51908]
          Length = 120

 Score =  133 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA    EA +   +    + ++ D +M  + 
Sbjct: 1   MKKILAVDDSASMRQMVGFTLKTAGFDVTEACDGDEALKAA-QGGEFDLVISDVNMPVMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R +P      +  L  E   +K   G  AGA  +++KPFN + L   +R++ 
Sbjct: 60  GLTLIRNLRTLPAYKFTPLLMLTTESGVDKKHEGRSAGATGWIVKPFNPDQLLATVRKVL 119


>gi|332307092|ref|YP_004434943.1| response regulator receiver protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174421|gb|AEE23675.1| response regulator receiver protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 548

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+VD   + R +  H+    G+   +EA S  EA    ++ + P  +++D  ME +  
Sbjct: 2   RILIVDDDSLNRFLLVHMLEQNGYPDCYEAESGHEALSLAKR-IQPELVLLDVMMEDMSG 60

Query: 62  FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++       + + ++    D + ++     G + F+ KPFN+  L   +    +
Sbjct: 61  FEVAPLLKAQTDEIYLPIIFITALDDEDSLVRCLDVGGDDFVAKPFNKTILAAKISAHAR 120

Query: 120 MQKSK----DENQFL 130
            ++      ++NQ L
Sbjct: 121 TRELSKKSYEQNQQL 135


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESME--G 58
           +++LLV+    +            + V  A    EA +  +      + +++D  +    
Sbjct: 3   NTILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLD 62

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  +R+     D+ V  +         +AG  +GA+ ++ KPF  E L   +R + 
Sbjct: 63  GLEVLRRIRKND---DIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVL 119

Query: 119 QMQKSKDENQFL 130
           + +    +   L
Sbjct: 120 RHESHHHQQSEL 131


>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
 gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
          Length = 243

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 15  NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 74  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 131 RYTYFNQN 138


>gi|89890994|ref|ZP_01202502.1| putative two-component response regulator [Flavobacteria bacterium
           BBFL7]
 gi|89516638|gb|EAS19297.1| putative two-component response regulator [Flavobacteria bacterium
           BBFL7]
          Length = 351

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R+    L     + V  A +     E  +K   P+ +V D  M    
Sbjct: 3   MKKVLIIEDDTALRENTAELLELSDYEVITAPNGRAGIELAKKNK-PDVVVCDIMMPEVD 61

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +        +   +L    D +++  G   GA+ +L KPF  E L  A+    
Sbjct: 62  GYGVLEALSLDTSTNQIPFIFLSARTDHKEVRKGMDLGADDYLTKPFEEEELLKAIETRL 121


>gi|332342032|gb|AEE55366.1| transcriptional regulatory protein KdpE [Escherichia coli UMNK88]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
           Q +
Sbjct: 119 QSA 121


>gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
 gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    +      +     + V    +  +A ++   +   +  ++D  M  +   
Sbjct: 2   RILLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDY-DGAILDVMMPKMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  + + E  + G  +GA+ +L KPF  + L   +R + + Q
Sbjct: 61  TVVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQ 119


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D  + +  + + L    G+ V  A++     E  +K    N +++D ++  +   
Sbjct: 4   KILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSY-NLILLDLNLPDIAGE 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      + +  L  +      +     GA+ ++ KPF    L   ++ + + 
Sbjct: 63  QLCKAIRKNSE---LPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRR 119


>gi|312887562|ref|ZP_07747156.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
 gi|311299932|gb|EFQ77007.1| two component transcriptional regulator, AraC family
            [Mucilaginibacter paludis DSM 18603]
          Length = 1363

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 4/125 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
            +L+V+ +   R   R       + V EAT+  E  +       P  +V D  M     LE
Sbjct: 1105 ILIVEDNEDFRFFMRDNLQQH-YKVIEATNGLEGWQKALA-CHPELIVSDVMMPYLDGLE 1162

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++       + V  L       K +   ++GAN +L KPF+ E L   ++ L  + 
Sbjct: 1163 LSRKLKTDKRTNHIPVILLTASSGEAKQLECLKSGANDYLNKPFSFEILNVRIKNLLTLN 1222

Query: 122  KSKDE 126
            ++  +
Sbjct: 1223 RTLRK 1227


>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
 gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +     +   + GF V  A    +     E E   +  ++D  + G+   
Sbjct: 2   RILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPY-DAAMVDIMLPGLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +         V  L  +   +  + G + G + ++ KPF+   L   +  L +   
Sbjct: 61  TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120

Query: 123 SKDENQFLDA 132
              E   L A
Sbjct: 121 RVAEPSALSA 130


>gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL D    +R++ RH     G++V EA    EA     K+   +  V+D  M    
Sbjct: 1   MIHILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQH-IHLAVVDIMMPHKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      D  +  L  +   E    G  AG + ++ KPF  + L F ++ L 
Sbjct: 60  GYEVCEEIRS---YYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALL 116

Query: 119 QMQKSKDE 126
           +  +  +E
Sbjct: 117 RRYEVVNE 124


>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 246

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 1   MDS----LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M      +L+++    + K+        G+ V  A    +        + P+ L++D  +
Sbjct: 9   MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRF-ASIHPHLLLVDLML 67

Query: 57  E--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                 E    VRQ      V +  +         I     GA+ ++ KPF+   L   +
Sbjct: 68  PKVDGFEVCRQVRQQSE---VPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARV 124

Query: 115 RELPQMQK----SKDENQFLD 131
           +   +        K++ + L 
Sbjct: 125 KSHLRRYHRYNGLKEQEKVLS 145


>gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLVD    + ++         F V    S  E           + +V+D  M  + 
Sbjct: 1   MTRVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRH-DIVVLDIMMPRMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R     + V V  L    D    I+G   GA+ ++ KP +   L   +R + 
Sbjct: 60  GIEVLRRIRAQ---SQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIM 116

Query: 119 QMQKS 123
           +  ++
Sbjct: 117 RRVRA 121


>gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
 gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LL D    +R++ R   +   + V EA    EA +  +KE + +  V+D  M  +  F
Sbjct: 4   TILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHV-DLCVLDVMMPKMDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++   +++ V  L  +      I G   GA+ +L KPFN       +    + 
Sbjct: 63  C-LLKEIRKKSNMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASIRR 119


>gi|224537465|ref|ZP_03678004.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520903|gb|EEF90008.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1390

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R L     + +FEA    EA E  +K  + + +V D  M  +   
Sbjct: 1140 TILIVEDNKDMRSYIRTLLVG-DYRLFEAGDGQEALEIVQKHTV-DLIVSDLMMPVMDGM 1197

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++    + +    L       +       G + +L KPF+ E LR  +R +  +
Sbjct: 1198 ELSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNILSL 1257

Query: 121  QKSKDEN 127
            ++   + 
Sbjct: 1258 RRKYKKM 1264


>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|323491863|ref|ZP_08097037.1| putative two-component response regulator [Vibrio brasiliensis LMG
           20546]
 gi|323313880|gb|EGA66970.1| putative two-component response regulator [Vibrio brasiliensis LMG
           20546]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+ +  V  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MNRVLLVEDNREVAGILFDYFECEGMELDYADNGELGLKLAL-EGNFDLILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  L    + + M+ G   GA+ +L KPF+ E L   +  L + 
Sbjct: 60  GLTVCNKLREAGNSTPILMLTALDNRDDMLRGFEHGADDYLTKPFDLEILEARIMALIKR 119

Query: 121 QKSK 124
            + +
Sbjct: 120 YRGQ 123


>gi|315606859|ref|ZP_07881868.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae ATCC 33574]
 gi|315251524|gb|EFU31504.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae ATCC 33574]
          Length = 975

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ S  V +          + +F A       E    +L+P+ ++ D  M  +  
Sbjct: 706 TRVLIVEDSAAVAEYIGQQLGGE-YRLFYAADGESGWEKAL-QLVPDIIITDVMMPRLDG 763

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+  L   V V  +  +V  E  + G  AGA+++L KPF+ + L   +  L +
Sbjct: 764 CSLCRRIRRSDLLGHVPVVMVTAKVTHEDKMQGLEAGADAYLEKPFHGDELNRRVERLLE 823

Query: 120 MQKSKDENQFLDAI 133
            Q+   + + L  +
Sbjct: 824 QQQLMRK-KLLAEL 836


>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
 gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +  + GF          A E   +E  P+ +++D  + G+
Sbjct: 1   MKARILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAF-RESNPDLVLLDLMLPGI 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I   + +   +DV V  L  + D   ++ G  +GA+ ++ KPF    L   +R   +
Sbjct: 60  DG-IKVCKLISAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLR 118


>gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 222

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V    +  E  +        + +V+D  +  + 
Sbjct: 1   MTCVLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGD-IDLMVLDLGLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119

Query: 121 QKSK 124
             ++
Sbjct: 120 GGAE 123


>gi|284039172|ref|YP_003389102.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283818465|gb|ADB40303.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1355

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            SLLLVD +  V       F    + + +A +  EA    ++   P+ ++ D +M  +   
Sbjct: 1101 SLLLVDDNVEVLNYLEQTFQAQ-YTIRKAENGQEALRLIQQHE-PDVIICDVAMPVMDGV 1158

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F   ++   + + + +  L      E  + G  AGA+ ++ KPF+ + L   + +L + 
Sbjct: 1159 TFCRRLKTDVVTSHIPLVLLTARTAVESELIGLNAGADDYIAKPFHPQLLAVRIEKLIEN 1218

Query: 121  QKS 123
            ++ 
Sbjct: 1219 RRL 1221


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|163853174|ref|YP_001641217.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218531978|ref|YP_002422794.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240140593|ref|YP_002965073.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens AM1]
 gi|254563083|ref|YP_003070178.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression [Methylobacterium
           extorquens DM4]
 gi|163664779|gb|ABY32146.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524281|gb|ACK84866.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240010570|gb|ACS41796.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens AM1]
 gi|254270361|emb|CAX26357.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens DM4]
          Length = 241

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +  +           V  A    E  +    +   + +V+D  + G     
Sbjct: 11  ILVVEDDREISALVARYLRANECRVSVAGDGRE-MDRVLADARVDLIVLDLMLPGEDGLS 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     + V +  L  + +    I G   GA+ +L KPFN   L   +R + + +
Sbjct: 70  LCRRLRA---ASQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 126

Query: 122 KSKDEN 127
            ++ ++
Sbjct: 127 GAEPQD 132


>gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 242

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    +  +        G     A    EA     +   P+ L++D  M  +    
Sbjct: 16  VLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAM-HQTCKPDLLLLDVQMPQLDGWQ 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            ++ +R      D+ V  L         + G R GA+ +++KPFN   +   ++ + +  
Sbjct: 75  VLSEIRARG---DMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRS 131

Query: 122 KSKDE 126
           ++  +
Sbjct: 132 QAAKQ 136


>gi|56752288|ref|YP_172989.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|56687247|dbj|BAD80469.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 411

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+ + + I R V        G  V    S  EA     ++   + L +D  M G    
Sbjct: 174 RLLVAEDNEINRDVLERRLRRLGHDVVCVASGQEALNQLAQQP-FDLLFLDLMMPGLTGF 232

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  ++  P   ++ V  +    D E +I   R GA  +L KPF    L+  +    Q 
Sbjct: 233 EVLQQLKADPTLAELPVLMISALDDLESVIRCLRLGATDYLTKPFEPTLLQTRLETCLQH 292

Query: 121 QKSKDEN 127
           ++ +D  
Sbjct: 293 KRLRDRE 299


>gi|27377710|ref|NP_769239.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27350855|dbj|BAC47864.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 2095

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + LLVD           +    G  V  AT+  EA    E       +++D  M  +  
Sbjct: 1975 KTALLVDDDARNIFALSSVLERRGMKVLTATTGREAVTLVESNPEIAIVLMDIMMPQMDG 2034

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               I  +R+ P    + +  L  +           AGA+ +L KP N + L  A+R    
Sbjct: 2035 YQTIGVIRENPAFLRLPIIALTAKAMKGDREKCLEAGASDYLAKPVNTDQLLLAIRMWLH 2094

Query: 120  M 120
             
Sbjct: 2095 R 2095



 Score = 90.3 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 6/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      +V   L  D GF V  A    EA E   K+  P  + +D  +  +L   
Sbjct: 1709 LLIVEDDPHYARVLVDLARDKGFKVLVAARGAEALELA-KQYQPRAVSLDVFLPDMLGWT 1767

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             ++ ++  PL   + V  +      E        GA SF+ KP   E +  A+ ++ +  
Sbjct: 1768 VLSQLKHNPLTRHIPVQIIT---LDEDRQHALARGALSFVNKPTTTEGVSAALTQIKEYA 1824

Query: 122  KSKDE 126
            + + +
Sbjct: 1825 RPRRK 1829



 Score = 73.3 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V+ +   +   R L +     +    +   A     +E   + +V+D  +  +  
Sbjct: 1829 KRLLIVEDNEAEQLSIRELLHHDDIEIVTTDTGAGALSTL-REAPCDCVVLDLRLPDMSG 1887

Query: 62   F--IAHVRQMPLGTDVFVYYLLME--VDFEKMI 90
            F  +  +R     +++ V           E   
Sbjct: 1888 FEVLDQIRHDEALSNIPVVVFTGRELSAEEDAE 1920


>gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 705

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S        E +  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|312115264|ref|YP_004012860.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220393|gb|ADP71761.1| response regulator receiver protein [Rhodomicrobium vannielii ATCC
           17100]
          Length = 121

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L VD S  +R +      + GF V EA    +         + + ++ D +M  +  
Sbjct: 3   KRVLTVDDSKTMRDMVAFTLKNAGFDVVEAEDGQKGLSVLGSANV-DVIITDVNMPNMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             FI HVR  P      +  L  E   E    G  AGA  +++KPF+ E L   + ++
Sbjct: 62  MTFIRHVRAQPQFKATPILVLTTEGSDETKQKGREAGATGWIVKPFSPEKLLQVVNKV 119


>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +    R    D G+ V  A    +A      E   + +++D  +  +   
Sbjct: 2   RILLVEDEATLAAQVRASLADAGYAVDTAADGLDAW-HLGAEEPYDAVILDLGLPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      +  V  L     + + + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRR 118


>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|158520639|ref|YP_001528509.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158509465|gb|ABW66432.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 240

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +  +   +  G+ V  A +        +    P+ +V+D  + G+  
Sbjct: 7   KQILIIEDEAHIAQGLQLNLSLKGYDVMVAENGSRGLAAWKAHN-PDLIVLDIMLPGMDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + H+R       + +  L  + +      G   G + +L KPF+ E     +  L  
Sbjct: 66  LSVLQHIRLEDE--KIPILILSAKKEPIDKRKGLTYGVDDYLTKPFDLEEFLLRVDRLLT 123

Query: 120 M 120
            
Sbjct: 124 R 124


>gi|156740269|ref|YP_001430398.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
 gi|156231597|gb|ABU56380.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
          Length = 407

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +++V+    +  +   +    G+      +  EA   C +    + +++D  +  +  
Sbjct: 5   TRIMVVEDDPTIAGLIEFVLRGAGYRTLLTATATEAL-ACIETGDIDLVILDWMLPDIPG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +++      + +  L  + +    I    +GA+ +L KPF  E L   +R L +
Sbjct: 64  VQICLALKERSGRGFLPILMLTAKGEVSDRITALDSGADDYLAKPFYIEELLARVRALLR 123

Query: 120 MQKSKDE 126
           ++ ++ E
Sbjct: 124 IRAAESE 130


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +         G+      +     E    +   + +++D  +    
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQD-FDVILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR++       +  +         ++G   GA+ +++KPF  E L   +R L 
Sbjct: 60  GIEVARRVREV---KSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALL 116

Query: 119 QMQKSKDENQ 128
           +    + E +
Sbjct: 117 RRIHLEGEQK 126


>gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 5   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 122 RQEAMGQNILLA 133


>gi|85860826|ref|YP_463028.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85723917|gb|ABC78860.1| response regulator with sigma 54 interaction domain [Syntrophus
           aciditrophicus SB]
          Length = 502

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+VD    +R V + +    G+ V +A    EA E  EKE   + +V D  M  + 
Sbjct: 1   MEKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKE-QIDVVVTDLKMPKLS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        +  V  +      E  +   + GA  ++ KPF+R+ L   + +  + 
Sbjct: 60  GLGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRT 119

Query: 121 Q 121
           +
Sbjct: 120 R 120


>gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR + +       + V  A     A    E +  P+ +++D ++  V+ F
Sbjct: 5   KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFE-QFNPDLVILDVNLPDVIGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               ++M     VFV  L    D    I G   GA+ +L KPF    L   +  + + Q+
Sbjct: 64  -NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQR 122

Query: 123 --SKDENQFL 130
             +  E + L
Sbjct: 123 VVTTAEQKRL 132


>gi|93006072|ref|YP_580509.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92393750|gb|ABE75025.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  +       F   GF +  A +              + +++D  + G+ 
Sbjct: 1   MYKILIIEDNPDIVANIYAFFEPKGFELDNAHNSLSGLALASSNRY-DVILLDVMLPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  L     V  L         +AG  +GA+ +L+KPF+   L   ++ L 
Sbjct: 60  GTKLCKTLRE-ELHDKTPVLMLTARDTVLDKVAGFDSGADDYLVKPFSLVELEARIKALI 118

Query: 119 QMQK 122
           +  +
Sbjct: 119 RRHQ 122


>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|147671709|ref|YP_001214988.1| chemotaxis protein CheY [Vibrio cholerae O395]
 gi|153816752|ref|ZP_01969419.1| chemotaxis protein CheY [Vibrio cholerae NCTC 8457]
 gi|153821179|ref|ZP_01973846.1| chemotaxis protein CheY [Vibrio cholerae B33]
 gi|229506834|ref|ZP_04396343.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae BX
           330286]
 gi|229510372|ref|ZP_04399852.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae B33]
 gi|229514501|ref|ZP_04403962.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae TMA
           21]
 gi|229517497|ref|ZP_04406942.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae RC9]
 gi|229528021|ref|ZP_04417412.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae
           12129(1)]
 gi|229605307|ref|YP_002876011.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae
           MJ-1236]
 gi|255746179|ref|ZP_05420126.1| chemotaxis regulator CheY [Vibrio cholera CIRS 101]
 gi|262158668|ref|ZP_06029782.1| chemotaxis regulator CheY [Vibrio cholerae INDRE 91/1]
 gi|262168922|ref|ZP_06036616.1| chemotaxis regulator CheY [Vibrio cholerae RC27]
 gi|262192316|ref|ZP_06050471.1| chemotaxis regulator CheY [Vibrio cholerae CT 5369-93]
 gi|126512771|gb|EAZ75365.1| chemotaxis protein CheY [Vibrio cholerae NCTC 8457]
 gi|126521238|gb|EAZ78461.1| chemotaxis protein CheY [Vibrio cholerae B33]
 gi|146314092|gb|ABQ18632.1| chemotaxis protein CheY [Vibrio cholerae O395]
 gi|229334383|gb|EEN99868.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae
           12129(1)]
 gi|229345533|gb|EEO10506.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae RC9]
 gi|229348481|gb|EEO13439.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae TMA
           21]
 gi|229352817|gb|EEO17757.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae B33]
 gi|229357185|gb|EEO22103.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae BX
           330286]
 gi|229371793|gb|ACQ62215.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae
           MJ-1236]
 gi|255735933|gb|EET91331.1| chemotaxis regulator CheY [Vibrio cholera CIRS 101]
 gi|262022621|gb|EEY41328.1| chemotaxis regulator CheY [Vibrio cholerae RC27]
 gi|262029548|gb|EEY48198.1| chemotaxis regulator CheY [Vibrio cholerae INDRE 91/1]
 gi|262031809|gb|EEY50392.1| chemotaxis regulator CheY [Vibrio cholerae CT 5369-93]
 gi|327486053|gb|AEA80459.1| Chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae
           LMA3894-4]
          Length = 119

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    EA    +K    + ++ D +M  + 
Sbjct: 1   MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKA-RFDVIISDVNMPVMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  VR         +  L  E   EK   G   GA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119


>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF V  A     A +  E    P+ LV+D  + G   
Sbjct: 20  RRVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEA-WQPDLLVLDVMLPGFDG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    D   M+ G   GA+ ++ KPF+   L   +  L +
Sbjct: 79  LEVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 135

Query: 120 MQKSKD 125
             +   
Sbjct: 136 RVERAA 141


>gi|298374437|ref|ZP_06984395.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one-component system) [Bacteroides sp. 3_1_19]
 gi|298268805|gb|EFI10460.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one-component system) [Bacteroides sp. 3_1_19]
          Length = 573

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D S  +R   RH+F    + V EA +  E  E    E  P++++ D  M     
Sbjct: 319 KKMLVIDDSDQIRWFLRHVFASE-YHVSEAHNGQEGVEIARVE-RPDFILCDVMMPVKDG 376

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +P    V V  L  +V+ E +IAG   GA+ ++ KPF+ E LR  +  L +
Sbjct: 377 LATCREIKGIPELAQVPVVLLTAKVESEDVIAGIECGADDYITKPFDVEVLRSKVNSLLK 436

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 437 RR---DEMRR 443


>gi|256783375|ref|ZP_05521806.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1331

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +     E          +++D  M  +  
Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R++P   ++ +  +  +           +GA+ ++ KP + + L   +R   
Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329


>gi|315500124|ref|YP_004088927.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
 gi|315418136|gb|ADU14776.1| response regulator receiver modulated diguanylate cyclase
           [Asticcacaulis excentricus CB 48]
          Length = 454

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD      ++ +       + V  A S  EA E    E  P+ +++D  M G    
Sbjct: 4   KVLVVDDIPANVRLLQAKLEADYYDVVTAHSGQEAIETAIIE-QPDIILLDVMMPGVDGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++++     + +  +      +  ++G  AGA+ FL KP +   L   ++ L ++
Sbjct: 63  EVTRQLKELAETRHIPIILVTALDGRDDRLSGLEAGADDFLTKPLDDVILFARLKALVRL 122

Query: 121 QKSKDENQFLD 131
           +   DE +  +
Sbjct: 123 KHLSDELRQRE 133



 Score = 55.6 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL-- 60
           ++L++D      +       +        T    A +        + LV++ +       
Sbjct: 156 NVLILDDQVRQAERLMVALGEQ-HRCAYETDPKAALKIAL--GRVDLLVLNLAARDFDPL 212

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F+AH+R   L   + V  L    +   ++ G   G +  L +P + + L    R   + 
Sbjct: 213 RFVAHLRSSELTRQLPVLGLFNPDERPTLLKGLELGVSDVLPRPVDIQELLARARGQIRR 272

Query: 121 QKSKD 125
           ++  D
Sbjct: 273 KRYAD 277


>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972]
 gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972]
 gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 5   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 122 RQEAMGQNILLA 133


>gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM
           16047]
 gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM
           16047]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    + +V        G+ V    +  +A E   KE   + +++D  M  +   
Sbjct: 2   RILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHA-KESSYDVIILDIMMPVMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G   +V  L  + + +  + G  +GA+ ++ KPF+ + L   +R   +   
Sbjct: 61  TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYITKPFSLKELLARLRSKERRAD 120

Query: 123 SKDENQF 129
               N+ 
Sbjct: 121 DYTPNEL 127


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|150025871|ref|YP_001296697.1| two-component system response regulatory protein RprY
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772412|emb|CAL43892.1| Two-component system response regulatory protein RprY
           [Flavobacterium psychrophilum JIP02/86]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       + R   +   F V  A +  E  E  +K+   +  ++D  M     
Sbjct: 5   KKILLVEDDPNFGSILRDYLSMNDFEVTLAKNGMEGFEKFKKDNY-DLCILDVMMPYKDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           +V + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 64  YTLAKEIREKNKEVPIVFLTAKSMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 123

Query: 122 KSK 124
            S+
Sbjct: 124 ASE 126


>gi|153834901|ref|ZP_01987568.1| transcriptional regulatory protein CpxR [Vibrio harveyi HY01]
 gi|148868672|gb|EDL67754.1| transcriptional regulatory protein CpxR [Vibrio harveyi HY01]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G+ V        A ++ EK  + + +++D  +  + 
Sbjct: 1   MSRVLIVDDDVPLCELLETVLQEEGYTVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GMQVARRICQRFA-TPILMLTALNDENSMLDGYKAGADQYIGKPFNVAELLMRIKAILRR 118

Query: 121 QKSKDENQFL 130
              + + Q +
Sbjct: 119 VGLERQRQAM 128


>gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
 gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia
           aggregata IAM 12614]
          Length = 304

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD S              G  V  ATS   A   C K + P+ +++D  M G+  F
Sbjct: 8   TVLVVDDSPETLGFVTEALKKTGVAVLVATSGETALNICSK-VTPDTILMDAVMPGLDGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    V V ++    + E ++    +G   FL KP + + L+  ++   + 
Sbjct: 67  ETCRQIKENPALQHVPVIFMTGLSETEHVVKALESGGVDFLTKPIDVDELKARIKVHLKN 126

Query: 121 QKS 123
            +S
Sbjct: 127 ARS 129


>gi|159900821|ref|YP_001547068.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893860|gb|ABX06940.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 552

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 2   DSL---LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
            ++   L+++    +++V     ++ G+ +   TS  E      ++   + +++D  +  
Sbjct: 236 KTIAELLVIEDDQEIQQVVSQGLSNAGYSITVTTSGEEGLRLAMRQP-FDLIMLDLMLPD 294

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +     +  +R+        +  +      E+ + G + GA+ ++ KPF+   L   +  
Sbjct: 295 IDGWTVLRQLRERTQTATTPLMLVSALGKPEEKVRGFQLGADDYITKPFDWNELLARISA 354

Query: 117 LPQMQKSK 124
             + ++ +
Sbjct: 355 SLRRREVE 362



 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +LL++ S   R V        G+ V  A       +       P  +++D  +  +    
Sbjct: 116 VLLIEDSQTYRAVVSARLTQSGYNVVTAPDGMAGLDLARA-YQPVAIILDLMLPHLNGEQ 174

Query: 62  FIAHVRQMPLGTDVFVYYLLM 82
               + + P    + +     
Sbjct: 175 VAFVLGEDPETKHIPIIIYTG 195


>gi|83745618|ref|ZP_00942676.1| OmpR [Ralstonia solanacearum UW551]
 gi|83727695|gb|EAP74815.1| OmpR [Ralstonia solanacearum UW551]
          Length = 245

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLSQQGFAVSVMHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122

Query: 122 KS 123
           ++
Sbjct: 123 QA 124


>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + K+      + G+ +  A+   EA E  + + + + +++D  M  +   
Sbjct: 5   TILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKV-DLIILDVMMPQMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      +  +  L  +      IAG   GA+ ++ KPF+   L   ++   +  K
Sbjct: 64  EACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYK 122


>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L++D    +  +      + G+ V E     +A     K+   +  ++D  M     
Sbjct: 3   TRILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDAL-RFIKDNPVDLAMLDIMMPKING 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+        V  L  +++    I G   GA+ ++ KPFN   +   ++   +
Sbjct: 62  FEICKIIREKYTF---PVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLR 118

Query: 120 MQK 122
             K
Sbjct: 119 RYK 121


>gi|262403141|ref|ZP_06079701.1| chemotaxis regulator CheY [Vibrio sp. RC586]
 gi|262350640|gb|EEY99773.1| chemotaxis regulator CheY [Vibrio sp. RC586]
          Length = 119

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L VD S  +R++  H   D G+ V  A+   +A    +K    + ++ D +M   G
Sbjct: 1   MTKVLAVDDSISIRQMVSHTLQDAGYEVETASDGRDALTKAQK-TRFDVIISDVNMPVMG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +F+  VR       + +  L  E   EK   G   GA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFDFVKAVRMQSQYKFIPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +  +++     +V+D  M G+ 
Sbjct: 12  MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 71  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 129


>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+++    +  + +   +  GF      +   A E  EK + P+ +++D  +     
Sbjct: 3   KRILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEK-ISPDAVILDIMLPEVDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R+      + +  L  +V+    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 62  LDICRGIRKKSA---LPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLR 118

Query: 120 MQKSKDENQFLD 131
               +   Q + 
Sbjct: 119 RTSPEKPVQSIS 130


>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+  H  R+      ++ GF+V    +          E   + +++D  +  + 
Sbjct: 1   MK-LLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDY-DLIILDVMLPDIN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +         G +  +  L    + E  + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 59  GWEIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRR 118


>gi|188534447|ref|YP_001908244.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029489|emb|CAO97366.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R   R      GF + +A ++            P  +++D  +    
Sbjct: 1   MTTILIVEDEKEIRHFLRVALEGEGFRIVDAETLKRGL-IEAATRKPQLVILDLGLPDGD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              FI  +RQ    + + V  L    D +  IA   AGA+ FL KPF    L   +R   
Sbjct: 60  GSQFIREIRQ---WSTIPVIVLSARSDEQDKIAALDAGADDFLTKPFGVGELLARVRVAL 116

Query: 119 QMQ 121
           +  
Sbjct: 117 RHH 119


>gi|218246869|ref|YP_002372240.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|218167347|gb|ACK66084.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
          Length = 481

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 48/127 (37%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+      K+  ++  D G+ V +A     A         P+ +++D  +  +    
Sbjct: 11  ILVVEDQLDNLKLLSNILWDEGYQVRQAIDGEMAL-IAIDTKYPDLILLDIKIPRLDGYQ 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ V +L    +  + +     GA  ++ KP+    +   +    ++ 
Sbjct: 70  LCQTLKAKETTANIPVIFLSAFDELWEKVKAFEMGAVDYITKPYQAPEVLARVENQVKLS 129

Query: 122 KSKDENQ 128
             + + +
Sbjct: 130 LLQKQLK 136


>gi|218245591|ref|YP_002370962.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|257058637|ref|YP_003136525.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
 gi|218166069|gb|ACK64806.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|256588803|gb|ACU99689.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
          Length = 121

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++LLV+ S + +++   +  D G+ V  A    +A +  EK   P+ +V+D  M G+ 
Sbjct: 1   MRAVLLVEDSPVQQEMISGILEDNGWRVIIAEDGFKALKEIEK-FSPDVIVLDIVMPGMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRLKSDPKLKNVPVVICSSKGEEFDRYWGIKQGADAYVAKPFEPIELVGTIKKLL 119

Query: 119 QM 120
           + 
Sbjct: 120 RK 121


>gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
 gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein
           [Paulinella chromatophora]
          Length = 254

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LLLVD    +R   +    D GF +  A+   E  E   +E+LP+ ++ D  M      
Sbjct: 30  RLLLVDDEPGLRSAVQAYLEDEGFQITTASDGQEGWEKA-QEILPDLVISDVMMPRCDGY 88

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             +  +R         V +L  +      I G +AG + ++ KPF+ + L
Sbjct: 89  KLLKLLRTDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 138


>gi|154251472|ref|YP_001412296.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155422|gb|ABS62639.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D    +RK+ R   +  G+ + EA +   A +   +   P+ +++D  +     L
Sbjct: 7   RVLVIDDEPPIRKLLRMGLSAHGYEIQEAPNGRTALDMLAQN--PDLIILDLGLPDIQGL 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R       V +  L    D    +     GA+ ++ KPF  + L   MR     
Sbjct: 65  DLLRTIRSRNE--SVPIVVLSSRGDETGKVEALDLGADDYVTKPFGMDELLARMRAAL-R 121

Query: 121 QKSKDENQF 129
            + + + + 
Sbjct: 122 HRLQMQGER 130


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++++VD    +R++      + G+ V +A +  E  E  +K  + + +V+D  M  +   
Sbjct: 5   TIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEV-HLIVLDIMMPKIDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++     + +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|27367550|ref|NP_763077.1| Chemotaxis regulator [Vibrio vulnificus CMCP6]
 gi|37677352|ref|NP_937748.1| chemotaxis protein CheY [Vibrio vulnificus YJ016]
 gi|320159405|ref|YP_004191783.1| chemotaxis regulator [Vibrio vulnificus MO6-24/O]
 gi|27359122|gb|AAO08067.1| Chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio vulnificus
           CMCP6]
 gi|37201898|dbj|BAC97718.1| chemotaxis protein CheY [Vibrio vulnificus YJ016]
 gi|319934717|gb|ADV89580.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio vulnificus
           MO6-24/O]
          Length = 119

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    +A +   K    + ++ D +M  + 
Sbjct: 1   MVKILAVDDSVSIRQMVSHTLKDAGYDVETANDGSDALQK-SKTTKFDVVISDVNMPNMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R +P    + +  L  E   EK + G  AGA  +L+KPFN +TL   ++ + 
Sbjct: 60  GFELVRAMRAIPQYKFIPILMLTTETSPEKKMEGKSAGATGWLVKPFNPDTLLKTLKRVL 119


>gi|297171130|gb|ADI22141.1| HD-GYP domain [uncultured myxobacterium HF0200_19H16]
          Length = 496

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    V  +        G+ V    S   A +  + E   + ++ D  M  +   
Sbjct: 13  RVLVVDDEEAVLDIVNEFLVLEGYYVKPVGSARAALDQLKTEP-FDVILTDLKMPDMDGI 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D  +  +      E  I   + GA  ++LKPF  + +   ++   + ++
Sbjct: 72  ELIQRIRDWNPDPVLVMMTGFGTVETAIEAMKLGAFDYILKPFKPDDVVAVLKRALEKRR 131

Query: 123 SKDEN 127
            + EN
Sbjct: 132 LRREN 136


>gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +LL+VD    +RK+ RH     G++V EA    +A    E     + +++D  M  + 
Sbjct: 1   MANLLVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLET-FKADLVILDVMMPNMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R      D+ +  L  + +  + I G   G + +++KPF  E L   ++ L 
Sbjct: 60  GYRLCQELR--DYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALL 117

Query: 119 QMQK 122
           +  +
Sbjct: 118 KRYR 121


>gi|299147147|ref|ZP_07040214.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298515032|gb|EFI38914.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1338

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLV+ +  +  + R    ++ F V  A++  EA E   KE + + +V D  M  +   
Sbjct: 1082 TVLLVEDNVDLLNLTRESLAEW-FRVLRASNGREALEVLAKENV-DVIVSDVMMPEMDGL 1139

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + V+     + + V  L  +   E  + G   GA+ ++ KPF+ + LR  +  L ++
Sbjct: 1140 ELCSKVKSEISYSHIPVILLTAKTTLESKVEGLECGADVYVEKPFSVKQLRMQIENLLKL 1199

Query: 121  QKS 123
            ++S
Sbjct: 1200 RQS 1202


>gi|291612955|ref|YP_003523112.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583067|gb|ADE10725.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 242

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R +      + G+++  A     A +        + +V+D ++ G   L
Sbjct: 9   RILIVDDDEDIRNLLADYLGEQGWLISTAQDG-TAMQQVLDSTPIDLIVLDLTLPGSDGL 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + V  L         I G   GA+ +L KPF    L   +R + + 
Sbjct: 68  TLCRDLRARSA---IPVIMLTARSAPLDRILGLEMGADDYLCKPFEPRELLVRIRNVLRR 124

Query: 121 QKSKDE 126
             S   
Sbjct: 125 SGSAAR 130


>gi|261342991|ref|ZP_05970849.1| hypothetical protein ENTCAN_09593 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314742|gb|EFC53680.1| transcriptional regulatory protein CpxR [Enterobacter cancerogenus
           ATCC 35316]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALSLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|224588363|gb|ACN58987.1| GAF sensor hybrid histidine kinase [uncultured bacterium BLR19]
          Length = 2129

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +F  F   V  A S  EA     +      +++D  M  +  
Sbjct: 2009 KNILVVDDDVRNLFALTTVFERFNINVITAESGKEAINILNENPKIEMVLMDIMMPEMDG 2068

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                  +R+    + + +  +  +           AGA+ ++ KP   + L   MR
Sbjct: 2069 YETTQKIRREHKNSSLPIIAVTAKAMKGDRQKCIEAGASDYITKPVKIDQLLSLMR 2124



 Score = 67.9 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+V+      ++     ++ G     AT+  E  +F  +  +P  + +D  +     
Sbjct: 1742 KVVLVVEDDLRFGRIIIEKAHENGLKAIVATNYLEVFDFINR-FMPIAITLDVKLPETSG 1800

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
               I  +R       + ++ +      E  +   + GA SF+LKP N + L
Sbjct: 1801 WKVIDLLRNDLTYRHIPIHVISG---EENKVLALKRGARSFILKPLNNDIL 1848



 Score = 52.5 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             S+L+V+ + +       + +D   ++  A +  EA E    E   + +++D ++  +  
Sbjct: 1864 KSILIVEDNELDSSQIAKMHDDEKLLITIAGTAKEALEKVATED-FDCIILDYTLPDMPG 1922

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEV 84
             E ++ V          V     + 
Sbjct: 1923 QELLSEV-SKAKKNLTPVIVYSAKD 1946


>gi|153869802|ref|ZP_01999327.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073730|gb|EDN70671.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 151

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           ++L+ D S I  K   +       F V  A +     +    +  P+ +++D  M G+  
Sbjct: 7   TILIADDSLINIKFLLYYLTNKVEFRVLVANNGKSVLQIA-SQANPDLILLDVMMPGIDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++      D+ + ++      E  I   R GA  ++ KP   E L   +     
Sbjct: 66  FQVCEQLKSEEHTRDIPIIFMTALDKTEDKIKAFRLGAADYITKPLQPEELLARVTTQLT 125

Query: 120 MQKSKDE 126
           ++K + +
Sbjct: 126 IRKQQKQ 132


>gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +L+VD    +R+     F    GF    A S  EA     +E + + +++D  M G+   
Sbjct: 7   ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERV-DLVILDVDMPGMNGR 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R    G  V V  L         +AG  AGAN ++ KPF+   L   +R   +
Sbjct: 66  EVCRQLR--EKGIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLR 122


>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           + +VD    +R +        G+ V    +     +  EK+  P+ L++D  M G+    
Sbjct: 5   IYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDK-PDMLILDIMMPGMDGYE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    +DV +  +    +    I G   G++ ++ KPF+   L   M+ + +  
Sbjct: 64  LCRQIRKK---SDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRV 120

Query: 122 KSKDENQFL 130
           K    N  +
Sbjct: 121 KMPKRNDEI 129


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 49/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+    A           +E+ P+ +++D  +  +    
Sbjct: 7   VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKF-REVNPDLVILDLMLPVLDGLE 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++  +  L  + + +  + G  +GA+ +L+KPF+ E L   +R   + 
Sbjct: 66  VA-RRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRR 121


>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+          +   + G+ V  A    +       E   + +V+D  M  +  +
Sbjct: 2   NILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQAL-ETPFDVIVLDVMMPKMDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++    D  V +L    D    I G   GA+ +L+KPF+   L   +R L +   
Sbjct: 61  -EVLRRLRKEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 123 SKDENQF 129
           S++E Q 
Sbjct: 120 SREEEQL 126


>gi|229526361|ref|ZP_04415765.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae bv.
           albensis VL426]
 gi|229336519|gb|EEO01537.1| chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Vibrio cholerae bv.
           albensis VL426]
          Length = 119

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    EA    +K    + ++ D +M  + 
Sbjct: 1   MAKVLAVDDSISIRQMVSHTLKDAGYEVETAADGREALAKAQKA-RFDVIISDVNMPVMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  VR         +  L  E   EK   G   GA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119


>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      +  F V++  S  +A    EKE L +  ++D  +     F
Sbjct: 18  NILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKL-DLAILDVMLPETDGF 76

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 77  QICRKIREKYNY---PVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRR 133

Query: 121 QK 122
            K
Sbjct: 134 YK 135


>gi|156977967|ref|YP_001448873.1| transcriptional regulatory protein CpxR [Vibrio harveyi ATCC
           BAA-1116]
 gi|156529561|gb|ABU74646.1| hypothetical protein VIBHAR_06763 [Vibrio harveyi ATCC BAA-1116]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G+ V        A ++ EK  + + +++D  +  + 
Sbjct: 1   MSRVLIVDDDVPLCELLETVLQEEGYTVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GMQVARRICQRFA-TPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRR 118

Query: 121 QKSKDENQFL 130
              + + Q +
Sbjct: 119 VGLERQRQAM 128


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 53/123 (43%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    ++++ +       + +  A+   E  +    +   + +++D  M  +  F
Sbjct: 4   NILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQS-FDLILLDVMMPNLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               + +   +++ + +L    + +  + G   G + ++ KPF+   L   ++ + +   
Sbjct: 63  EVA-KMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSN 121

Query: 123 SKD 125
            K+
Sbjct: 122 HKN 124


>gi|86159891|ref|YP_466676.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776402|gb|ABC83239.1| response regulator receiver modulated diguanylate cyclase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD S         +     + V  A    +A      E  P+ +++D  +  +   
Sbjct: 35  KILVVDDSRTQLDWLVRVLEREEYDVRTAADGKDAIRKVRGEP-PDLVLLDMILPDMDGL 93

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  V+  P    + V  L ++ D +  +AG R GA+ FL KPF    +      + ++
Sbjct: 94  EVLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRI 153

Query: 121 QKSKDENQ 128
           +  +D+ +
Sbjct: 154 KTLQDQLR 161


>gi|21225602|ref|NP_631381.1| two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
 gi|8246822|emb|CAB92873.1| putative two-component system sensory histidine kinase [Streptomyces
            coelicolor A3(2)]
          Length = 1331

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +     E          +++D  M  +  
Sbjct: 1211 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1270

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R++P   ++ +  +  +           +GA+ ++ KP + + L   +R   
Sbjct: 1271 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1329


>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 249

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +  A     A     +E  P+ +V+D  +  +   
Sbjct: 24  RVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAV-RAAREFRPDAVVLDLMLPDMDGL 82

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R      DV V +L  +   E  IAG  AG + ++ KPF  E +   +R L +   
Sbjct: 83  SALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSG 142

Query: 123 SKDENQFLDAI 133
           + D  +  DA+
Sbjct: 143 AAD--RRSDAV 151


>gi|317473954|ref|ZP_07933233.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909796|gb|EFV31471.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 245

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G++V  A S  EA +        N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYVVDTANSAEEALKL--DISAYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  +  + I
Sbjct: 123 TQQGEGERAPEQI 135


>gi|309791249|ref|ZP_07685780.1| response regulator receiver modulated diguanylate cyclase
           [Oscillochloris trichoides DG6]
 gi|308226675|gb|EFO80372.1| response regulator receiver modulated diguanylate cyclase
           [Oscillochloris trichoides DG6]
          Length = 321

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+ D    +R+V   L    G+ +    +  +  +  +  ++P+ L+ID  M  +  
Sbjct: 11  QTILIADDDESIRQVLMILLRSVGYRIELVGNGSDLIQRAQV-IMPHLLLIDVMMPDMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R       +    L    + + ++ G  +GA+ +++KPFN   L   +R   +
Sbjct: 70  YEALRQLRNDTRTAHIPAIMLTARGEPKDLVHGFDSGADDYVIKPFNTVELIARVRSQLR 129

Query: 120 M 120
            
Sbjct: 130 R 130


>gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 5   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 64  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 121

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 122 RQEAMGQNILLA 133


>gi|294667110|ref|ZP_06732335.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603120|gb|EFF46546.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 259

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 28  VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146

Query: 124 KDEN 127
            +E 
Sbjct: 147 SNEQ 150


>gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
 gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
          Length = 222

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R +        G++   A++  EA E  +     + +V+D  M  + 
Sbjct: 1   MATILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHS-IDLVVMDVMMPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F A  +   L  ++ V  L         + G   G + ++ KPF+ + L   MR + Q 
Sbjct: 60  GFSALEKMKALQPNLPVILLTALGQEYDKVHGFELGVDDYVEKPFSPKVLLLRMRAILQR 119


>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R+    L     +    A    +   F   E   +  +ID  +  +   
Sbjct: 2   RLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGL-FLGCEYDYDLAIIDLGLPLMDGT 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G +  +  L    +++  + G  AGA+ +L KPF+ E L+  +  L +   
Sbjct: 61  TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120

Query: 123 SKDENQF 129
               +Q 
Sbjct: 121 GHASSQL 127


>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
            regulator [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
            regulator [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 1319

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +LLV+ + I R+V   L N+ G ++  A +  EA E   +    + +++D  M  +   
Sbjct: 964  RVLLVEDNAINREVVLELLNNSGLIIETAVNGQEALERVSQHP-FDLILMDIQMPLMDGY 1022

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R +P      +  L      E   A   AG N F+ KP     L  A+++  
Sbjct: 1023 TATRAIRTLPGWEQTPILALTASAFEEDRKACKAAGMNDFIAKPVTPAKLFEALQQWL 1080


>gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD  H + ++      + G+    A +  EA            +++D  M    
Sbjct: 1   MK-ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  VR+    +D+ +  +  +      I G   GA+ ++ KPFN   +   +R L 
Sbjct: 60  GIDVVKEVRKD---SDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLL 116

Query: 119 QMQKSKDENQ 128
           +  + + + +
Sbjct: 117 RRSQKQVKEE 126


>gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130]
 gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130]
          Length = 246

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R++      + GF V  A+   EAR    + L  + L++D  M G    +
Sbjct: 27  ILVVDDDSRIRELLTRYLAEQGFRVSSASDASEARRQL-QGLSFDLLIVDVMMPGERGTD 85

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R+     DV V  L    + +  IAG  AGA+ +L KPF+   L   +  + +  
Sbjct: 86  FTRSIREDL---DVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAILKRV 142

Query: 122 KSKD 125
           ++++
Sbjct: 143 QTEE 146


>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
 gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
          Length = 243

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 15  NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 74  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 131 RYTYFNQN 138


>gi|218682484|ref|ZP_03530085.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 430

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R+         GF V   ++     E       P  +V D  M G+   
Sbjct: 5   KILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYS-FPGVVVSDIRMPGMDGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   +  +V V  +    D +  +   R GA  F+ KPF  E L   +R   + + 
Sbjct: 64  TLMQKIREIDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAMERRG 123

Query: 123 SKDENQFLDAI 133
              EN+ L A+
Sbjct: 124 LVLENRLLKAV 134


>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
 gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF ++++ +  +A    E E      ++D  +  +  F
Sbjct: 4   NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESE-QLELAILDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      +  V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119


>gi|94501162|ref|ZP_01307685.1| DNA-binding response regulator [Oceanobacter sp. RED65]
 gi|94426738|gb|EAT11723.1| DNA-binding response regulator [Oceanobacter sp. RED65]
          Length = 247

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    V  +     +  G+ +  A       +   KE   + +++D  +  +  
Sbjct: 14  KRILIIEDDRSVNDLLCGNLSKKGYQIEAAFDGDRGLKKAIKED-FDIILLDVMLPKIDG 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +  +       V  L  +   E  I G ++GA+ +L+KPF+   L   ++ + +  
Sbjct: 73  L-KLLTLLRSEKQTPVLMLTAKGGEEDRIYGFKSGADDYLIKPFSMTELDLRIKAILRRT 131

Query: 122 KSKDE 126
           + + E
Sbjct: 132 QIQRE 136


>gi|83643354|ref|YP_431789.1| CheY-like receiver protein [Hahella chejuensis KCTC 2396]
 gi|83631397|gb|ABC27364.1| FOG: CheY-like receiver [Hahella chejuensis KCTC 2396]
          Length = 120

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        G+ V EA +  EA    +     + ++ D +M  + 
Sbjct: 1   MAKILAVDDSASMRQMVTFTLKGAGYQVDEAANGQEALSKAKSGKY-DLVITDVNMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I ++R         +  L  E   +K   G  AGA  +++KPFN + L   ++++ 
Sbjct: 60  GISLIKNLRAEGAYKFTPLLMLTTESGADKKAEGKAAGATGWIVKPFNPDQLVATVKKVL 119


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K         G+            +   +    + +++D  +  + 
Sbjct: 1   MSKVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDY-DVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   +     +  +         ++G   GA+ +L+KPF  E L   +R L + 
Sbjct: 60  GLEVARRLREV-KKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118

Query: 121 QKSKDE 126
              + E
Sbjct: 119 IAIETE 124


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFN-DFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M ++L VD    +  + R  F  +  F V  A +  EA +  +   + +++++D  + G+
Sbjct: 12  MRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSV-DFVILDIMLPGL 70

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +RQ      V +  L         + G   GA+ +L KPF+   L   ++  
Sbjct: 71  DGMETCRRIRQQ---HTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAH 127

Query: 118 PQM-QKSKDEN 127
            +  ++ K E 
Sbjct: 128 FRRVERMKREM 138


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|289767250|ref|ZP_06526628.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
 gi|289697449|gb|EFD64878.1| two-component system sensory histidine kinase [Streptomyces lividans
            TK24]
          Length = 1333

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +     E          +++D  M  +  
Sbjct: 1213 RTVLVVDDDARNLFALSGILELHGFRVLHAENGRRGIEALVDHPEVALVLMDVMMPEMDG 1272

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R++P   ++ +  +  +           +GA+ ++ KP + + L   +R   
Sbjct: 1273 YTATAEIRRIPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1331


>gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 235

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D  + + ++   +  D G+    A    E     E+E  P+ +++D  M  + 
Sbjct: 1   MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAERE-APDLVIMDVMMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F         G    V +L  + D      G +AG + +++KPF+   L   +    + 
Sbjct: 60  GFTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRR 119


>gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+         R    + G++V         +   E E   + LV+D  + G  
Sbjct: 1   MMRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V +L    D    + G   GA+ +L KPF+   L   ++ + + 
Sbjct: 60  GWT-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRR 118

Query: 121 QKSKDENQFLDA 132
            + +D N    A
Sbjct: 119 GQPRDSNTLRAA 130


>gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
 gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + LV+    +     ++    GF V        A E       P+  ++D  +  +  F
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R +     + V +L    D    + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera
           sp. 301]
 gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera
           sp. 301]
          Length = 315

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V     ++ GF V  A +   A      E  P  +++D  M G+  F 
Sbjct: 14  VLIVDDVPDNLAVLHDALDESGFTVLVANNGEAALVAAI-EAQPGIILLDAIMPGMDGFE 72

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + + ++    + E ++A  +AG   ++ KP     +   +    Q  
Sbjct: 73  VCRKLKADINTRHIPIIFMTGLTESEHVVAAFQAGGTDYITKPIRAIEVLARIDAHMQTS 132

Query: 122 KSKDENQ-FLDA 132
           +  ++ +  LDA
Sbjct: 133 RLMNQARGALDA 144


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+         R   ++ G++V  A      +   E E   + L++D  + G   +
Sbjct: 2   RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDY-DLLILDVMLPGQDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V +L    D    + G   GA+ +L KPF+   L   +R + +  K
Sbjct: 61  T-LLQNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119

Query: 123 SKDENQF 129
            ++    
Sbjct: 120 PRESMSL 126


>gi|260170293|ref|ZP_05756705.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one component system') [Bacteroides sp. D2]
          Length = 1464

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1263

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1264 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1324 RKLFRERIRQQMENQ 1338


>gi|253567761|ref|ZP_04845172.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841834|gb|EES69914.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1420

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            L+V+ +  +R   R +  +  + V EA +  EA          ++++ D  M  +     
Sbjct: 1170 LVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNP-IDFIISDLMMPVMDGIEL 1227

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               V++    + +    L  +   E  +   R G + +LLKPF+   L   ++ + + +K
Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENRK 1287

Query: 123  SKDENQFLD 131
                   LD
Sbjct: 1288 RYQRKFTLD 1296


>gi|229118514|ref|ZP_04247867.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664895|gb|EEL20384.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V E  +  +A E  E+  + + +++D  + G+ 
Sbjct: 1   MTTILVLEDDITIRSFITLNMQRAGFNVLETDTGEKALELLEQNNV-DIVILDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ +  L   V  +  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFRVCKSIRKNNE--DIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLL 117

Query: 119 QM-QKSKDENQFL 130
           +  QK+K E + +
Sbjct: 118 RRIQKNKKELELI 130


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLLV+    + +V +       ++V  AT      E  E     + +++D  +  + 
Sbjct: 1   MK-LLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEM-FEYDLIMLDLMLPKLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F    R+   G    +  +  + D    +    AGA+ +L+KPFN + L   +R L 
Sbjct: 59  GIQFCQQRRK--KGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118



 Score =  112 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 47/114 (41%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +++VD    + K+ +     +GF +          +  E+   P+ L++D  M     +
Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTT-PDLLILDVEMPEISGI 557

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
           E    VR  P    + + +L    + + +  G +AGA+ ++ KP     L   +
Sbjct: 558 ELCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611



 Score = 65.2 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG----V 59
           LL+VD+  I+ +   +    +G +   AT + +A+E   +   P+ +++D          
Sbjct: 375 LLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARS-RPDVILLDMGFPDREEIC 433

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  +RQ+     +       + +F   +  AR GA  FL KP   E +   + ++ Q
Sbjct: 434 LELLKDIRQL--IPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERIIETIVKVVQ 491


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +LLVD     R +       +G+ + EAT+  EA    E+E   + +++DE M G+  +E
Sbjct: 445 ILLVDDDVFNRTIIGAWLRRWGYRLREATNGKEALAVLEEE-RFDLILMDEQMPGMSGIE 503

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            +  +R      ++ V  +              AG N +L KPF+   L   +R
Sbjct: 504 TVDRIRADARWKNIPVIAVTANAMKGDRERFLAAGMNDYLSKPFSPADLLHVVR 557


>gi|167628686|ref|YP_001679185.1| two component diguanylate cyclase [Heliobacterium modesticaldum
           Ice1]
 gi|167591426|gb|ABZ83174.1| two component diguanylate cyclase [Heliobacterium modesticaldum
           Ice1]
          Length = 324

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L++D +   R   + +    GF V+   S  EA    +     + +++D  M G   +E
Sbjct: 3   ILIIDDAEDTRLYLQAVLASDGFEVYATASAQEALAHLQDRPSIDLILLDVIMPGIDGIE 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               ++      DV V  +    + E +     AGA  +++KP  +  L   +R    + 
Sbjct: 63  LCQQIKSDAAWRDVPVIMVTALTNIEDLDRAFAAGAMDYIMKPVKKRELLARIRSALALK 122

Query: 121 ----QKSKDENQFL 130
               ++ + E + L
Sbjct: 123 TEMDRRKEREEELL 136


>gi|162147183|ref|YP_001601644.1| regulatory protein [Gluconacetobacter diazotrophicus PAl 5]
 gi|209544237|ref|YP_002276466.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785760|emb|CAP55331.1| putative regulatory protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531914|gb|ACI51851.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 263

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +R +   +    G+ V       E           + +V+D  + G   L
Sbjct: 20  RILVVEDDPGMRTLLVRVLQGDGYRVRGVQDGREMWSALATSPA-DLIVLDVMLPGTNGL 78

Query: 61  EFIAHVRQ-------MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +    +R+       +     + V  +    +    + G   GA+ ++ KPF ++ L   
Sbjct: 79  DLCRSLRRGGVPVDGVVPDPQIPVIMVSARGEELDRVVGLELGADDYVAKPFGQKELLAR 138

Query: 114 MRELPQM 120
           +R + + 
Sbjct: 139 VRAVLRR 145


>gi|121997014|ref|YP_001001801.1| response regulator receiver protein [Halorhodospira halophila SL1]
 gi|121588419|gb|ABM60999.1| response regulator receiver protein [Halorhodospira halophila SL1]
          Length = 395

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 14/142 (9%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD   I  ++   L  D  + V  A S  +A +   +E LP+ +++D +M G    +
Sbjct: 14  VLVVDDEPINLELLGRLLGDA-YRVLVARSGEQALDIVARERLPDLVLLDITMPGISGYD 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
            +  ++  P    V V ++    D+E    G   GA  ++ KPFN   +R  +    ++ 
Sbjct: 73  VLDALQGEPRTRGVPVIFISARGDWEDEADGLARGAVDYITKPFNSAVVRARVGAHVKLK 132

Query: 121 ----------QKSKDENQFLDA 132
                     ++ + + Q ++ 
Sbjct: 133 VRSDLLAANYRQLEAQQQRIEE 154


>gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +  +     + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAY-DLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    +      L     + V   T    A     +  + +  ++D  M  +  F
Sbjct: 2   RVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASAL-LALESNMYDIAILDVMMPKMSGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + +  L  +   +  + G   GA+ +L KPF    L   +R L +   
Sbjct: 61  EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120

Query: 123 SKDEN 127
           S  EN
Sbjct: 121 SFQEN 125


>gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
 gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
          Length = 240

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A     A +    +L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAAL-QLKPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L +  
Sbjct: 72  LEATKRIVAERP-VPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRV 130

Query: 122 KSKD 125
           +   
Sbjct: 131 ERAK 134


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LL++    + +         GF V       E  E    E   + +++D  +     +
Sbjct: 4   RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSE-QWDLILLDVMLPSLNGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R         +  +         + G   GA+ +++KPF  E L   +R L + 
Sbjct: 63  EVCRRIRA---AKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119

Query: 121 QKSKDENQFL 130
              +   Q L
Sbjct: 120 VHPEANAQVL 129


>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 887

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +  VR + R      G+ + EA +  +  +   ++L P+ +++D  M G+  F 
Sbjct: 13  ILVVDDAKTVRALLREHLESVGYQLAEAVNGEDCLKSF-QQLRPDIVLLDAVMPGMDGFN 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A +R++P G D  +  +    D   +     AGA  ++ KP +   LR  +  L +  
Sbjct: 72  CCARLRRLPQGMDTPILMITGLDDPSSVERAFAAGATDYITKPIHWAVLRMRVSRLIEAS 131

Query: 122 KSKDENQFLDA 132
           ++  + +   A
Sbjct: 132 RAMIKLRQQSA 142



 Score =  118 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 4/117 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL + + + +KV  HL    G+    A +  +  E   ++   + +++D  M  +   
Sbjct: 763 RILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALRQQSY-DVILMDVQMPEMDGL 821

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R         +  +          A   AG + ++ KP     L  A+++ 
Sbjct: 822 TATQQIR-RSGLPQPRIIAMTANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQKC 877



 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD +   RK+       +G + +   +  EA    +++   +  +ID+ +  +  
Sbjct: 620 KRLLIVDDNPTYRKILSLYSQFWGTLPYTFAAGSEALRRLQQQPGFDLAIIDDRLADMDG 679

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              +  +RQ+P    + + +L      E++ +  + G    L KP  +  L+ A+ +L 
Sbjct: 680 LSLVEQIRQLPQTATLPLIFLTNTSQRERVASHLQNGL--ILTKPLRQSQLQDALLKLL 736


>gi|315644147|ref|ZP_07897317.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
 gi|315280522|gb|EFU43811.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
          Length = 1048

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            LL+VD   +  +V   +     + V  ATS  E     + +   + ++ D  M  +   
Sbjct: 721 RLLIVDDDPVNLQVLEAILPPDEYDVTMATSGKEVLAVLDAQEW-DLVISDIMMPQMSGY 779

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    T++ V  L      + + +G  AGAN ++ KP     +R  +  L  +
Sbjct: 780 ELTRRIRERFTLTELPVLLLTARSQPKDIQSGFLAGANDYVTKPVEAIEIRSRIEALTTI 839

Query: 121 QKSKDENQFLDA 132
           +++  E   L+A
Sbjct: 840 KQTVREQLRLEA 851


>gi|304406061|ref|ZP_07387719.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345304|gb|EFM11140.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +    +     + V          +     +  + +++D  +  +   
Sbjct: 2   RLLIVEDEIHLAEALTQILKKQNYSVDAVHDGQAGLDNALSGIY-DLILLDIMLPEMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    G    V  L  + +    I+G   GA+ ++ KPF+ E L   +R   + +
Sbjct: 61  TVLKTMRSKGIATPVILLTAKGEISDKISGLDYGADDYVAKPFSTEELLARIRAALRRK 119


>gi|300867480|ref|ZP_07112131.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334474|emb|CBN57299.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 378

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           S+L+VD +    ++   +  + G+ V +A +   A     +E  P  +++D  M  +   
Sbjct: 12  SILVVDDTPDNVRLLSTILTEEGYQVRKALNGQRALTTI-QEFPPALILLDVMMPDMNGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P  + + V +L         +     G   ++ KPF    +   +     +
Sbjct: 71  EVCKKLKDSPQTSSIPVIFLSALDHVLDKVKAFEVGGVDYITKPFQEREVLVRVANQLMI 130

Query: 121 QKSKDENQ 128
           Q  +   Q
Sbjct: 131 QNQQRLLQ 138


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LLV+    +R+         GF V  A    E   +  +E+  +  +ID  +  +  +
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R    G    V  L     ++  + G + GA+ +L+KPF+ E L   +  L + 
Sbjct: 61  ELIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118


>gi|34541418|ref|NP_905897.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis W83]
 gi|34397735|gb|AAQ66796.1| DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis W83]
          Length = 961

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+ +  +  + + L  D  + V  A +  E       E +P+ ++ D  M  +   
Sbjct: 698 TILLVEDNKDINLLVKLLLCDR-YNVLSAANGKEGIALA-TEHIPDIIITDIMMPIMDGI 755

Query: 63  IAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R  Q PL   + +  L  +   +  + G ++G  S+L KPF+ E L   + +L + 
Sbjct: 756 EMTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLLKD 815

Query: 121 QKSKDE 126
           ++   +
Sbjct: 816 RELLKK 821


>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + ++        G+ V         RE       P+ +++D  + G+ 
Sbjct: 1   MPNILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNP-PDLVILDLMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + +  L    D    + G   GA+ ++ KP     L   +R L 
Sbjct: 60  GLQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117

Query: 119 QMQKS 123
           +    
Sbjct: 118 RRSSL 122


>gi|325123756|gb|ADY83279.1| osmolarity response regulator [Acinetobacter calcoaceticus PHEA-2]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 1/115 (0%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHV 66
           VD    +R + +    D GF+V  A    +  +   +  L + +V+D  +          
Sbjct: 2   VDDDVRLRTLLQRFLEDKGFVVKTAHDASQ-MDRLLQRELFSLIVLDFMLPVEDGLSICR 60

Query: 67  RQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           R      D  +  L         IAG  AGA+ +L KPFN   L   +R + + Q
Sbjct: 61  RLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 115


>gi|311281631|ref|YP_003943862.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308750826|gb|ADO50578.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + LV+    +     +     GF V        A +    +  P  +++D  +  +  F 
Sbjct: 5   IWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQAL-AQGEPALIILDVGLPDINGFE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +    D+ + +L    D    + G   GA+ ++ KPF+   +   +R + +    
Sbjct: 64  LCRRLLAQSADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTILRRLHK 123

Query: 124 KDE 126
           +  
Sbjct: 124 QQR 126


>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +  +   +  D  + V +A S  EA    EKE   + +++D  +  +   
Sbjct: 5   KILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKES-FDLIILDIMLPDIDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R   LGT   + +L  +      I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 64  DVCRKIRDKFLGT---IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRK 120

Query: 121 QK 122
           QK
Sbjct: 121 QK 122


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V +      G+    A +  EA E        + +++D  +  +   
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF-GNGNWDLILLDVMLPNISGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L         ++G   GA+ ++ KPF  E L   +R   ++  
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 123 SKDENQ 128
              E Q
Sbjct: 123 VVKEEQ 128


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    + +    L    GF    AT    A     K    + +++D  + G+ 
Sbjct: 1   MATVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKND-IDLVLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ+   + V V  +         + G   GA+ ++ KP++   L   +R + 
Sbjct: 60  GTDVCRRLRQV---STVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|170077481|ref|YP_001734119.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885150|gb|ACA98863.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 266

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 3/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++     R V        GF    A++  +  E    E  PN +V D  M  + 
Sbjct: 1   MTKILIIEDEAETRNVFLKCLEFEGFKTCAASNALDGIELALNE-QPNLIVCDILMPDMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               ++ +R+ P  T +   +L  +V   ++  G + GA+ +L KP   E    A+    
Sbjct: 60  GYFVLSKIRRSPKTTAIPFIFLTAKVTMAELRYGMQLGADDYLTKPCTVEQFLGAINVRL 119

Query: 119 QMQKSKDENQFLDA 132
           + Q+   EN  LD+
Sbjct: 120 KRQQDTIENHHLDS 133


>gi|85058306|ref|YP_454008.1| KDP operon transcriptional regulatory protein [Sodalis glossinidius
           str. 'morsitans']
 gi|84778826|dbj|BAE73603.1| KDP operon transcriptional regulatory protein [Sodalis glossinidius
           str. 'morsitans']
          Length = 241

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +LL++D    + +  R         VFEA ++            P+ +++D  +    
Sbjct: 1   MKTLLIIDDEKHICRFLRASLESDDIKVFEAETLARGLSTA-ASRQPDLVILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-ELPQ 119
                +R+    +D  + +L   V  +  I    AGA+ FL KPF    L+  +R    +
Sbjct: 60  GVT-FIREFRQWSDKPIIFLSARVGEDDKIEALDAGADDFLCKPFGMGELQARVRWRSLR 118

Query: 120 MQKSKDEN 127
             ++  E 
Sbjct: 119 RGENAREQ 126


>gi|150017636|ref|YP_001309890.1| response regulator receiver protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149904101|gb|ABR34934.1| response regulator receiver protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 156

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+   I+R+V      + G+ V EA    +A E  +   +   +++D  +  + 
Sbjct: 1   MNKILVVEDEDILREVIVDYLIEDGYQVLEAADGEKALELFQSNSV-ELVILDIVLPKID 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+      + +  L    D +  + G   GA+ +L+KP++   L   ++   
Sbjct: 60  GWSVCRRIRKNSS---IPIIMLTARSDEDDSLMGYELGADDYLIKPYSPRILMVKVKRFL 116

Query: 119 QM 120
           + 
Sbjct: 117 EK 118


>gi|315606849|ref|ZP_07881858.1| two component system sensor histidine kinase/response regulator
            [Prevotella buccae ATCC 33574]
 gi|315251514|gb|EFU31494.1| two component system sensor histidine kinase/response regulator
            [Prevotella buccae ATCC 33574]
          Length = 1298

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L++D  H   ++         F V +A    +  E   +  LP+ +V D  M  +   
Sbjct: 1055 TILVIDDEHDTVELLERNL-AADFKVIKAYDGRQGLEEAAR-TLPDIIVCDLMMPNMDGM 1112

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             F+  ++       + V     +   E MI     GA+++L KP +   LR  +  L   
Sbjct: 1113 EFLHMLKSDKKLAHIKVIIFTAKTSEEDMIEAFDQGADAYLTKPISLRLLRKRIDRLVAQ 1172

Query: 121  QKSKD 125
              + +
Sbjct: 1173 SNTAE 1177


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +R +      + GF   + ++        E++ + + +++D  M  +
Sbjct: 1   MKDRILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEV-DLIILDIMMPQM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +      ++ +  L  + +    I+G  AGA+ +L KPFN   L   ++   +
Sbjct: 60  NGIDAAFKIREE-KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIR 118

Query: 120 MQKSKDE 126
             K  +E
Sbjct: 119 RYKKYNE 125


>gi|260222272|emb|CBA31670.1| Response regulator mprA [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 248

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 1/123 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+   ++R          G  V  A+   +A+   E     + +V+D  +  V 
Sbjct: 16  MAHLLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLES-TRFDGVVLDLGLPVVD 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                         + V  L      +  + G  AGA+ +L KPFN   L   ++ + + 
Sbjct: 75  GIAVLQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRR 134

Query: 121 QKS 123
            + 
Sbjct: 135 SRL 137


>gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus
           CTV-05]
 gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus
           CTV-05]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    + +V        G+ V    +  +A E   KE   + +++D  M  + 
Sbjct: 1   MK-ILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHA-KENSYDVIMLDIMMPVMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  +    G   ++  L  + + +  + G  +GA+ +L KPF+ + L   +R   + 
Sbjct: 59  GITALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERR 118

Query: 121 Q 121
           +
Sbjct: 119 E 119


>gi|288942776|ref|YP_003445016.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288898148|gb|ADC63984.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 623

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD +     +        G  V  A S  EA     +   P+ +++D  M G+   
Sbjct: 495 RVLLVDDNPGNLDMFATYLRIRGCDVRTAGSGAEAI-ALSRMPRPDVILMDVQMPGMDGL 553

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                +R  P    V +  L              AG + +L KP   + L   + +
Sbjct: 554 ETTRRLRSDPALRAVPIIALTALAMPGDREQCLEAGMDDYLTKPLGLKELHATVAQ 609


>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R      +  V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  HVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     +   + V    S  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  ++L+ D    VR++ R      G+ V       EA +  E+E +    ++D  M G 
Sbjct: 1   MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESV-QLAIVDVMMPGK 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +R+     D+ V  L  + +      G  AG + +L KPF    L + ++ L
Sbjct: 60  NGWELCREIRE---FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKAL 116

Query: 118 PQMQKSKDEN 127
            +  +   + 
Sbjct: 117 LRRYQMVSKQ 126


>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +        GF V  A +  EA +    +     +++D  +  +   
Sbjct: 4   KILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQK-FEVILLDLMLPKIDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +   + V V  +  + +      G   GA+ ++ KPF+   +   ++   + ++
Sbjct: 63  -ECLRMIRSKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRER 121


>gi|149279746|ref|ZP_01885874.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
 gi|149229544|gb|EDM34935.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Pedobacter sp. BAL39]
          Length = 1300

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            S+LLV+  + + K          + + +A    EA E  EK  +   +V D  M  +   
Sbjct: 1051 SILLVEDHNDILKYISQELRGE-YFILKANDGMEALELLEKHPV-QLVVSDIMMPRMNGL 1108

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++     + + V  L  +   +  I G   GA++++ KPF+   L   ++ L + 
Sbjct: 1109 DLCRRIKTDLTYSHIPVILLTAKTSVDSRIEGLGTGADAYIDKPFSMSHLEMQIKSLLRN 1168

Query: 121  QKSKDE 126
            +K   E
Sbjct: 1169 RKLVKE 1174


>gi|39996595|ref|NP_952546.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983476|gb|AAR34869.1| sigma-54 dependent DNA-binding response regulator [Geobacter
           sulfurreducens PCA]
 gi|298505611|gb|ADI84334.1| sigma-54-dependent transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 458

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 1/127 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R+    L +  G+ V +A S  EA    E++   + ++ D  M G+    
Sbjct: 5   VLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLERKTY-DLVISDVKMPGLDGIT 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R   +  D  V  +      E+ +   + GA  ++ KPF  E ++   R   + +  
Sbjct: 64  LLGRIKEMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALEKRDL 123

Query: 124 KDENQFL 130
           K EN  L
Sbjct: 124 KRENLRL 130


>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
 gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++     +  GF          A +     L P+ +++D  + G+   
Sbjct: 15  RVLIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKV-AHLRPDVVILDLGLPGLDGL 73

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     TD ++  L         I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 74  EVCKRIRA---FTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRR 130

Query: 121 QKSKDE 126
            +  DE
Sbjct: 131 PRKIDE 136


>gi|15614576|ref|NP_242879.1| hypothetical protein BH2013 [Bacillus halodurans C-125]
 gi|10174632|dbj|BAB05732.1| BH2013 [Bacillus halodurans C-125]
          Length = 914

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   +   V +++     + +   TS  E  +  ++    + ++ D  M  +   
Sbjct: 587 KILIVDDDAVNLHVLKNIICSEAYTIEAVTSGEEVLDRLDQGW--DLILADVMMPSMSGY 644

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +++ V  L      E++  G  +GAN +L+KP +   L+  +R + ++
Sbjct: 645 ELTREIRNQFSISELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDALELKVRIRAVIEL 704

Query: 121 QKSKDENQFLDA 132
           + S  E   ++A
Sbjct: 705 KHSIQERLRMEA 716


>gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G++V       EA    + E     +++D  + G+   
Sbjct: 2   RVLVVEDDRRIAADLTRGLEAAGYVVEVVGDGEEAWFRGDTEDY-AAIILDLGLPGMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R       + V  L     + + + G  AGA+ +L KPF  E L   +R + + 
Sbjct: 61  TVLKRWRSNDRRIPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 8   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 126 SLTTKQTI 133


>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++    + ++ R       F V    S     +   +E   + +++D  +  +  
Sbjct: 5   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMNG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++    
Sbjct: 64  FEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 120

Query: 120 MQK 122
             +
Sbjct: 121 RYE 123


>gi|330817555|ref|YP_004361260.1| response regulator receiver protein [Burkholderia gladioli BSR3]
 gi|327369948|gb|AEA61304.1| response regulator receiver protein [Burkholderia gladioli BSR3]
          Length = 324

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +        G+ V  A S  +A   C   + P+ +++D  M G+  F 
Sbjct: 23  VLIVDDTPDNLALLSDTLRADGYAVLVALSGDDAL-KCLARVTPDVVLLDAMMPGLDGFE 81

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V ++    + E ++ G R G   ++ KP   E +   +    Q  
Sbjct: 82  TCRRLKLDRRHEHLPVIFMTALAESEHVVQGFRVGGIDYVTKPVRPEEVCARIAAHVQRS 141

Query: 122 KSKD 125
           +++ 
Sbjct: 142 RAQR 145


>gi|304392753|ref|ZP_07374693.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130]
 gi|303295383|gb|EFL89743.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V   T    A +       P+  V D  M  + 
Sbjct: 1   MATIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLTA-KRPDLAVFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + + 
Sbjct: 60  GM-ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 118

Query: 121 QKSKDE 126
             ++ E
Sbjct: 119 TAARAE 124


>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +    + +  + +     + V       +A  + E     + +++D  M     +
Sbjct: 2   RILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPY-DLILLDVMMPKKSGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R    G    V  L  +   E  + G   GA+ +L KPF    L   ++ L + 
Sbjct: 61  EVVRELRSN--GIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRR 118


>gi|255281631|ref|ZP_05346186.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255267698|gb|EET60903.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+    + ++ G+    A    +A +  E E   + +V+D  M G+ 
Sbjct: 1   MFQILVVDDDKNIRRFLCAVLSNAGYRPIGAACAEDALKIME-EKRIDLIVLDVMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R      D+ V  L  +   E +  G  AG + ++ KP N E L   +  L 
Sbjct: 60  GYAFTKLLR--DCRNDLPVLMLTAKQLPEDLKQGFLAGTDDYMTKPVNEEELLLRIGALL 117

Query: 119 QMQKSKDENQF 129
           +  +   + Q 
Sbjct: 118 RRARIASDRQL 128


>gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
 gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + +         G+ V +A    EA +  ++  + + L++D  M  + 
Sbjct: 1   MAKILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEV-DLLIMDVMMPRLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRATLKIRENMS-LPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRR 118


>gi|218709130|ref|YP_002416751.1| putative two-component response regulator [Vibrio splendidus LGP32]
 gi|218322149|emb|CAV18263.1| putative two-component response regulator [Vibrio splendidus LGP32]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  V    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 5   MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAL-ENSFDIIILDLMLPRMD 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  L      + M+ G   GA+ +L KPF+ + L   M  L + 
Sbjct: 64  GLTVCNKLRDQGNATPILMLTALDSRDDMLKGFEHGADDYLTKPFDLDILEARMNALVRR 123

Query: 121 QKSK 124
            + K
Sbjct: 124 YRGK 127


>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
 gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
          Length = 235

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+       + G+ V+ A +     E  +KE   +  ++D  M  +   
Sbjct: 4   NILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKED-IHLAIVDIMMPVMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++      D+ V +L  + +    I G   GA+ ++ KPF    L   +    +  +
Sbjct: 63  TMTMKLRENY-DIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQ 121

Query: 123 S 123
            
Sbjct: 122 Q 122


>gi|156936224|ref|YP_001440140.1| DNA-binding transcriptional regulator CpxR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156534478|gb|ABU79304.1| hypothetical protein ESA_04123 [Cronobacter sakazakii ATCC BAA-894]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD    V ++         + V  A     A E+  + L P+ +++D  +  +    
Sbjct: 6   ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYV-RSLTPDLIILDVMLPAMDGYE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    ++V +  L   +  +++++G  +GA+ ++ KP++   L   +R L + 
Sbjct: 65  TCRRIRE---FSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRR 120


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  +        G+ V  A    E  E   K    + ++ D  M  +  
Sbjct: 3   KTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRK-KSIDLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 SRGGETEQIE 131


>gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + ++ +      GF+V EA+    A ++  KE   +  ++D  M  +  
Sbjct: 3   KTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYV-KENHIDLAIVDIMMPKMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +   ++++       +  L  +      I G   GA+ F++KPF+   +   ++   + 
Sbjct: 62  Y-QLIKKVRETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRR 119


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L++D    +R +      + G+ VF+A++  +A E  +KE   + +V+D  M G+  
Sbjct: 3   NNILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEE-IHLMVLDIMMPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R      ++ +  L  + +    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  LEVCRRVREKY-NIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRR 119


>gi|261343520|ref|ZP_05971165.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rustigianii DSM 4541]
 gi|282568669|gb|EFB74204.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rustigianii DSM 4541]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    +R+  R      G+ VFEA +             P+ +++D  +       
Sbjct: 6   ILIIEDEKEIRRFVRLALEGEGWKVFEAENCQRGLIEAGT-RQPDLVILDLGLPDGDGL- 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +R +   + + +  L    +  + +A   AGA+ +L KPF    L   +R   + 
Sbjct: 64  DLIRDLRKWSSIPLIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRR 120


>gi|237654345|ref|YP_002890659.1| response regulator receiver protein [Thauera sp. MZ1T]
 gi|237625592|gb|ACR02282.1| response regulator receiver protein [Thauera sp. MZ1T]
          Length = 121

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S + R   + +    G+ V  A +  +A     +   P+ +++D  M G+  
Sbjct: 4   RKILVVDDSPVERLALQEVLGRNGYQVLTAENGEQAIAR-SRSDHPDLILMDVVMPGMNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 + +     D+ +     +      I G R GA  +L+KP + + L   +R +
Sbjct: 63  YQATRTISRDDETRDIPIIMCTSKGQETDKIWGMRQGALDYLVKPVDHDELLARIRAM 120


>gi|160882825|ref|ZP_02063828.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
 gi|156111849|gb|EDO13594.1| hypothetical protein BACOVA_00787 [Bacteroides ovatus ATCC 8483]
          Length = 1464

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1206 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1263

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1264 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1323

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1324 RKLFRERIRQQMENQ 1338


>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|89891604|ref|ZP_01203108.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7]
 gi|89516151|gb|EAS18814.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       F V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLMMNDFDVVHAKNGMEGFEKFKKDNY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           +V + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNEEVPIIFLTAKAMKEDVLRGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124

Query: 122 KS 123
            +
Sbjct: 125 GA 126


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+         +    + G+ V  A +  +  +   +E   + +++D  + G+   
Sbjct: 2   RILVVEDEAKTADYLKRGLEESGYRVEVARNGVDG-KHLIEEETFDLVILDVMLPGLDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  VRQ        V +L      E  + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  QLVQVVRQRSA--HTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRR 118


>gi|324114804|gb|EGC08772.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 247

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  +  +     G+ V    +  EA E    E  P+ +++D  + G   L
Sbjct: 19  RILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEA-ELRIAETPPDLVILDWMLPGVSGL 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
           E    +R      D+ +  L    +  + + G   GA+ +++KPF+   L 
Sbjct: 78  EICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELM 128


>gi|300869422|ref|ZP_07114007.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria
           sp. PCC 6506]
 gi|300332552|emb|CBN59205.1| two-component hybrid sensor and regulator (fragment) [Oscillatoria
           sp. PCC 6506]
          Length = 237

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LL + +              G+ +  A +  EA    + E  PN +++D  M G+    
Sbjct: 119 ILLAEDNEANISTVSSYLKAKGYRIVLAKNGEEAIALAKSEN-PNLILMDIQMPGMDGLE 177

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +R  P    V +  L              AGAN ++ KP   + L   +++L 
Sbjct: 178 AMQQIRLDPKLVKVPIIALTALAMSSDRDRCLAAGANDYISKPVKLKQLAATIQQLL 234


>gi|258625652|ref|ZP_05720531.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
 gi|258581890|gb|EEW06760.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + EA                + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAV--TDQIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|227875996|ref|ZP_03994118.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977100|ref|ZP_06184074.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1]
 gi|306819276|ref|ZP_07452986.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307700171|ref|ZP_07637214.1| putative Transcriptional regulatory protein WalR [Mobiluncus
           mulieris FB024-16]
 gi|227843420|gb|EEJ53607.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269934931|gb|EEZ91491.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1]
 gi|304647942|gb|EFM45257.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307614630|gb|EFN93856.1| putative Transcriptional regulatory protein WalR [Mobiluncus
           mulieris FB024-16]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
             +L+VD    + ++ R    + G+  V  A+S   A     +   P   ++D  +    
Sbjct: 9   RRILIVDDEPDILELVRTTLENEGYTQVETASSARAA-GQILRTTKPEAAILDVMLPDGN 67

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ V +L    +      G   GA+ ++ KPF  E L   +  + 
Sbjct: 68  GFVLCDEIRK---TRDIPVIFLTARDEPTDKFQGLGMGADDYITKPFYPEELALRLAAVL 124

Query: 119 QM 120
           + 
Sbjct: 125 RR 126


>gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      + G+    A +  +A          + +++D  M  +   
Sbjct: 18  KILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTMPDISLVILDLMMPEMNGM 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +RQ+   + + +  L  +      I G   GA+ ++ KPFN   +   ++ L +  +
Sbjct: 78  -DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 123 SKDEN 127
           ++  N
Sbjct: 137 NQVTN 141


>gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
 gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
          Length = 219

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K+     +  G+         EA      E   + +++D  + G+ 
Sbjct: 1   MPKILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEE-FDLILLDIMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +    G    V +L    D    + G ++GA  +++KPF    L   +  + + 
Sbjct: 60  GFQVMEKIRETG--TPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLRR 117

Query: 121 QKSKDEN 127
              + +N
Sbjct: 118 FNREQKN 124


>gi|156603224|ref|XP_001618796.1| hypothetical protein NEMVEDRAFT_v1g66793 [Nematostella vectensis]
 gi|156200390|gb|EDO26696.1| predicted protein [Nematostella vectensis]
          Length = 188

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       + +       + +  A    E      K    +  ++D  M     
Sbjct: 4   KKILLVEDDPNFGTILKDYLALHDYNITHAKDGIEGLIEF-KNNDFDLCILDVMMPRKDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           ++ + +L  +   E ++ G +AGA+ +L KPF+ E L F ++ + Q +
Sbjct: 63  FSLAADIRATNKEIPIIFLTAKTMKEDVLKGYQAGADDYLNKPFDSEVLLFKIKAILQRK 122

Query: 122 KSKDENQ 128
           ++    +
Sbjct: 123 ETDKSKE 129


>gi|154492193|ref|ZP_02031819.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC
           43184]
 gi|154087418|gb|EDN86463.1| hypothetical protein PARMER_01827 [Parabacteroides merdae ATCC
           43184]
          Length = 372

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD       + + +    G+ +    S  +A     +E  PN +++D  M  +   
Sbjct: 9   TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIA-QERHPNLILLDIMMPEMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
             + H++  P   ++ V  +    D + ++ G + GA  ++ KPF RE L   +    EL
Sbjct: 68  EVLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVAHRYEL 127

Query: 118 PQMQKSKDENQ 128
             +++ K E +
Sbjct: 128 FSIKRIKQELE 138


>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++    + ++ R       F V    S     +   +E   + +++D  +  +  
Sbjct: 6   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDY-DLIILDIMLPKMNG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++    
Sbjct: 65  FEICKQIRAI---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIS 121

Query: 120 MQK 122
             +
Sbjct: 122 RYE 124


>gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 8/129 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++  + + +V +      G+ V +      A +   K + P+ +++D  + GV 
Sbjct: 1   MKKILIIEDEYPISQVIKVYLKKAGYDVEQVFDGSNAMDTF-KHVEPDLVILDVMLPGVD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R         V  L    D    + G   GA+ ++ KPF+ E L   ++ + 
Sbjct: 60  GWTLLQDIRSKCA-----VIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVL 114

Query: 119 QMQKSKDEN 127
           +   +K+ N
Sbjct: 115 RRIGNKNNN 123


>gi|332760947|gb|EGJ91235.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           flexneri 4343-70]
 gi|333007932|gb|EGK27408.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           flexneri K-218]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +  +     + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAY-DLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 705

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S        E +  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073503|gb|ADJ62902.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + ++ R      GF    AT V +AR+    E LP+ +++D  +       
Sbjct: 8   ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHI-AESLPHVVLLDWMLPDSSGLV 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R+      + V  L  +   E  + G   GA+ ++ KPF+ + L   ++ L + +
Sbjct: 67  LLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRK 126


>gi|254784921|ref|YP_003072349.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237685780|gb|ACR13044.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 300

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 7/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD       +      D GF V  A +  E  +   KE  P+ +++D  M G  
Sbjct: 1   MTKVLVVDDVEDNIVLLTFELEDEGFEVIAAHNGRECLDLVHKEW-PDIILLDIRMPGIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  ++      D+ V  +        ++     GA+ F+ KP     L   MR   
Sbjct: 60  GLETLEQLKADESTRDIPVVMVSANTGDNSIVRALDMGAHDFVCKPIEYPVLSARMRSAL 119

Query: 119 Q----MQKSKDENQFLDAI 133
           +     +     N+ L+ +
Sbjct: 120 RLVNARRALVRANEELERL 138


>gi|153870478|ref|ZP_01999872.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073055|gb|EDN70127.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 402

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 3/115 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           ++LLVD      +V   +  + G+ +   TS   A +  +   LP+ +++D  M  +   
Sbjct: 7   NILLVDDIPTNLQVLTQMLTEHGYKIRPTTSGQLALKSAQF-TLPDLVLLDIQMPEMNGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           E    ++      D+ V ++    +    +     G   ++ KPF  E +   + 
Sbjct: 66  EVCEKLKADEKTCDIPVIFISALSEVFDKVKAFSVGGVDYVTKPFQAEEVLARVE 120


>gi|170020961|ref|YP_001725915.1| DNA-binding transcriptional activator KdpE [Escherichia coli ATCC
           8739]
 gi|169755889|gb|ACA78588.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 222

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ S  +      +  + G+ V       +A      +   + +++D  + G+   
Sbjct: 2   RILLVEDSIALADQLMPMLREHGYAVDWLADGRDALPALNDDP-FDLVILDLGLPGLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  V V  L     + + I G ++GA+ +L KPF+ + L   ++ L +   
Sbjct: 61  QVLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120

Query: 123 SKDENQFLDA 132
            +     L A
Sbjct: 121 GRANTSQLTA 130


>gi|81300624|ref|YP_400832.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|81169505|gb|ABB57845.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 411

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+ + + I R V        G  V    S  EA     ++   + L +D  M G    
Sbjct: 174 RLLVAEDNEINRDVLERRLRRLGHDVVCVASGQEALNQLAQQP-FDLLFLDVMMPGLTGF 232

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  ++  P   ++ V  +    D E +I   R GA  +L KPF    L+  +    Q 
Sbjct: 233 EVLQQLKADPTLAELPVLMISALDDLESVIRCLRLGATDYLTKPFEPTLLQTRLETCLQH 292

Query: 121 QKSKDEN 127
           ++ +D  
Sbjct: 293 KRLRDRE 299


>gi|310823306|ref|YP_003955664.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396378|gb|ADO73837.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D     RK+   L     + +  ATS  E      +E  P+ +++D  M G+  
Sbjct: 20  RQVLIADDDAASRKIAAALLAASDYRIRFATSGEETLAAVGEE-RPDLVLLDVMMPGLDG 78

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+   G  + +  +        ++ G +AGA+ FL KP +   LR  +  L +
Sbjct: 79  FEVCRRLRERLSGEYIPIILVTSLDGRSDVVQGLKAGADDFLHKPVHGAELRARVSNLLK 138

Query: 120 MQKSKDENQFLDA 132
           ++      Q L A
Sbjct: 139 VRAYH---QLLAA 148


>gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  V     +  G+         +A      +  P+ +++D  +   G L+
Sbjct: 10  VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V V  +   V+    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 69  ICRDLRKESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125

Query: 122 K 122
           +
Sbjct: 126 R 126


>gi|297196322|ref|ZP_06913720.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197722900|gb|EDY66808.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1150

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 2/123 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           L    G  V  A +     E          +V+D  M G   
Sbjct: 1028 RTVLVVDDDTRNVFALTELLEHEGVHVITADNGRTGIELVRTRHDIGLVVMDVMMAGTDG 1087

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  +R++P   DV +  +  +           AGA+ ++ KP + + L   +R   +
Sbjct: 1088 YSAMQAIRKLPHAADVPIIVVTAKAMAGDRAEALAAGADDYVSKPVDTDRLVAKIRLWLE 1147

Query: 120  MQK 122
              +
Sbjct: 1148 QGR 1150


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++++VD    +R++      + G+ V +A    E  E  +K  + + +V+D  M  +   
Sbjct: 5   TIMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEV-HLIVLDIMMPKIDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++     + +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|146343754|ref|YP_001208802.1| chemotaxis protein CheY [Bradyrhizobium sp. ORS278]
 gi|146196560|emb|CAL80587.1| Chemotaxis protein cheY [Bradyrhizobium sp. ORS278]
          Length = 129

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M + L+VD S +VRK+ R +  + GF V EA    +A E C K  LP+ +++D +M  + 
Sbjct: 1   MKTCLVVDDSSVVRKIARRILEELGFSVVEAEDGEQALELCTKS-LPDAILLDWNMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F+  +R++P G    V +   E D + +     AGAN +++KPF++E +    +E+ 
Sbjct: 60  GYDFLGRLRRLPGGDGPKVVFCTTENDIDHISRALNAGANEYIMKPFDKEIVAAKFQEVG 119

Query: 119 QMQKSKDE 126
            +Q    E
Sbjct: 120 LIQALSAE 127


>gi|305016|gb|AAB03045.1| similar to S. typhimurium OmpR [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R +   
Sbjct: 61  DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILXR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLVD    +  + +      G+ V  A    +A      +   + ++ D  M  +
Sbjct: 1   MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKF-NQYQYDLIISDIMMPNM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +      +    +    ++  +V     I     GA+ F+ KPF+   L   ++ +  
Sbjct: 60  DGYDFIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILN 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|254448684|ref|ZP_05062142.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
 gi|198261692|gb|EDY85979.1| two-component system regulatory protein [gamma proteobacterium
           HTCC5015]
          Length = 244

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S+L+V+    +           GF    A     A     +    + +V+D  + G    
Sbjct: 19  SILIVEDHQDLAANIGDYLEAGGFAPDFAADGPSAVNLAAENPY-DAIVLDIMLPGFDGY 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    + V +  L      +  I G   GA+ +L+KPF  + L   ++   + 
Sbjct: 78  EVCRRLRQQVGLS-VPIIMLTARDQLDDKILGFEQGADDYLIKPFEMKELEARLKAHIRR 136

Query: 121 QKSKDENQFLD 131
            + + E   L 
Sbjct: 137 NRGELEGNTLQ 147


>gi|182413825|ref|YP_001818891.1| response regulator receiver protein [Opitutus terrae PB90-1]
 gi|177841039|gb|ACB75291.1| response regulator receiver protein [Opitutus terrae PB90-1]
          Length = 404

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D   + R+V         + V  A     A +       P   ++D  M G+ 
Sbjct: 1   MK-ILIADDEPVARRVLMGFLEKEKYEVVVAEDGQAALKLLSAPEAPTIAILDWMMPGLN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R   L    +V  +  +     + +   AGA+ ++ KPFN   L   +R   
Sbjct: 60  GLQVCRRIRTTNLKIRPYVMMVSAKSGANDITSALDAGADDYISKPFNPGELMARLRVAR 119

Query: 119 QMQKSKDENQ----FLDAI 133
           +  + + E Q     L+++
Sbjct: 120 RSIEYQVELQNHITQLESL 138


>gi|171060372|ref|YP_001792721.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Leptothrix
           cholodnii SP-6]
 gi|170777817|gb|ACB35956.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Leptothrix cholodnii SP-6]
          Length = 863

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD          ++       +  ATS  +A      +  P+ +++D  M G+   
Sbjct: 10  RILIVDDVPENLHALMNILRS-DHAIVAATSGEKALALARAQPQPDMILLDIKMPGMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++H++  P    + V ++    +      G + G   ++ KP N + LR  +    ++
Sbjct: 69  SVLSHLKADPATAAIPVIFVTALTEAADEARGLKLGVADYITKPVNPDLLRLRIATQLEL 128

Query: 121 QKSKD 125
           ++ + 
Sbjct: 129 RRHRR 133



 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LL+VD              D  + +  A+S  +A +  + +  P+ +++D  M  +   
Sbjct: 151 TLLVVDDVPDNIHELIEALRDE-YRITVASSGPKALQIVQGDDPPDLVLLDIVMPDMDGY 209

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +PLG  + V ++ +    EK + G   GA  ++ KPF+ + +R  +R   ++
Sbjct: 210 EVCRRIKALPLGPRLPVIFVTVVDASEKKVQGFGLGAADYITKPFDIDEVRARVRTHIEL 269

Query: 121 QKSKDENQFLDA 132
            + +   + L A
Sbjct: 270 SRLQRCLEELVA 281


>gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R + +       + V       EA ++ E     + +++D  + G   F
Sbjct: 2   RILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSY-DGVLLDIMLPGKDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   +G D  +  L      E  + G   GA+ +L+KPF  E L   +R + + + 
Sbjct: 61  AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 123 SKDENQF 129
               NQ 
Sbjct: 121 QFVTNQL 127


>gi|87200632|ref|YP_497889.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136313|gb|ABD27055.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 240

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           S++LV+    +R +      + G+ V  A +  E     E E   + +V+D  + G   +
Sbjct: 5   SIVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPA-DLVVLDIMLPGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +DV + ++      E  + G   GA+ +L KPF+   L   +  + + 
Sbjct: 64  ELFRRLRRQ---SDVPIIFVSARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRR 120


>gi|329955055|ref|ZP_08296036.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
 gi|328526345|gb|EGF53360.1| response regulator receiver domain protein [Bacteroides clarus YIT
           12056]
          Length = 390

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD       + + L  +  F +  A +  +A E  EKE  P+ +++D  M      
Sbjct: 26  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVEKEH-PDLVLLDVMMPDLSGF 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 85  EVAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 144

Query: 121 QKSKD 125
             +K 
Sbjct: 145 VAAKR 149


>gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas fluorescens WH6]
 gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+       +        GF V  A       +   K   P+ +++D  +  +  
Sbjct: 4   KRILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLD-LHKSWRPDLILLDVMLPRLSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +  +   +D  V  +    D  + +   R GA+ +++KP++   +   +  + +  
Sbjct: 63  -TEVLSAVRRSSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAVLRRT 121

Query: 122 KSKDENQFL 130
                 + L
Sbjct: 122 TGSQPVEQL 130


>gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 705

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S        E +  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|255691726|ref|ZP_05415401.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260622611|gb|EEX45482.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1476

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1218 TLLLVEDNRDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1335

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1336 RKLFRERIRQQMENQ 1350


>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118


>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
 gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    ++++ +    D G+ V  A +  +      K   P+ +++D  +  + 
Sbjct: 1   MKTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGN-PDLILLDIMLPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      + V  +      E  + G     + ++ KP +   +   +  + 
Sbjct: 60  GYTVCEMIRQESE---IPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVI 116

Query: 119 QMQKSK 124
           +  ++K
Sbjct: 117 RRYENK 122


>gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 222

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 3/126 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+        GF    A+   EA    ++E + +  ++D  M  +   
Sbjct: 2   RILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPV-DLAIVDVMMPKMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                 + +G  V V  L  +   +    G  AGA+ +++KPF  + L F +R + +  +
Sbjct: 61  TLTKNLVEIG--VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQ 118

Query: 123 SKDENQ 128
             + +Q
Sbjct: 119 KTERSQ 124


>gi|328542032|ref|YP_004302141.1| two component transcriptional regulator, LuxR family protein
           [polymorphum gilvum SL003B-26A1]
 gi|326411782|gb|ADZ68845.1| two component transcriptional regulator, LuxR family protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 305

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S              G  V  ATS   A    E+ + P+ +++D  M  +  F 
Sbjct: 11  VLVVDDSPETLGFLTQALERSGVTVLVATSGQAALSVAER-VTPDMVLMDAVMPEMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    V V ++    + E ++    +G   FL KP N + L+  +R      
Sbjct: 70  TCRRIKTRPALQHVPVIFMTGLSETEHVVHALESGGVDFLTKPINIDELQARIRVHLANA 129

Query: 122 KSKDENQF-LDA 132
           +     +  LDA
Sbjct: 130 RQVQSARIALDA 141


>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF+V  A       E    +  P+  ++D  + G+  
Sbjct: 4   THVLFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRAD-RPDIALLDVMVPGLDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 63  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + 
Sbjct: 73  QVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130


>gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
 gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+   I+    +      G+ V  A S  EA      E   + +++D ++    
Sbjct: 1   MKRILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL--EHGFDLILLDRNLPDGR 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L++   +R+      V + +L        MI G RAG + ++ KPF+ E L   +  + 
Sbjct: 59  GLDYCRELRKSTK---VPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVL 115

Query: 119 QMQKS 123
           +  ++
Sbjct: 116 RRSEN 120


>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++LL++    +R + R  F   GF + EA    E   F       + +++D  M     
Sbjct: 7   KNILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNK-IDLVILDIMMPKVDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +  +  +R++   + V V  L  +   E  + G   GA+ ++ KPF+ + L   ++ L +
Sbjct: 66  ITVLEMIRKV---STVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLK 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + +V        G+ +  A     A     +ELLP+ +V+D  +     F
Sbjct: 20  RVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAA-RELLPDAVVLDVMLPDTDGF 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   +  DV V +L      E  I G  AG + ++ KPF+ E +   +R L +   
Sbjct: 79  AVLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAG 138

Query: 123 SKDEN 127
              + 
Sbjct: 139 LARQL 143


>gi|218261992|ref|ZP_03476633.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223650|gb|EEC96300.1| hypothetical protein PRABACTJOHN_02304 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD       + + +    G+ +    S  +A     +E  PN +++D  M  +   
Sbjct: 9   TVLVVDDVPTNVMLVQAILKKEGYTLLTTDSGAKALRIA-QERHPNLILLDIMMPEMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
             + H++  P   ++ V  +    D + ++ G + GA  ++ KPF RE L   +    EL
Sbjct: 68  EVLQHLKSNPETNNIPVIIMSALSDMQSIVKGYQLGATEYVTKPFQREELVKRVAHRYEL 127

Query: 118 PQMQKSKDENQ 128
             +++ K E +
Sbjct: 128 FSIKRIKQELE 138


>gi|254391838|ref|ZP_05007033.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294815467|ref|ZP_06774110.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|197705520|gb|EDY51332.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC
            27064]
 gi|294328066|gb|EFG09709.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1804

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1684 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1743

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  + 
Sbjct: 1744 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVRA 1803

Query: 121  Q 121
            +
Sbjct: 1804 R 1804


>gi|146313692|ref|YP_001178766.1| DNA-binding transcriptional regulator CpxR [Enterobacter sp. 638]
 gi|145320568|gb|ABP62715.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVIVAHDGEQALSLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---TYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT]
 gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT]
          Length = 231

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + K  + +     F V +A S  +  +    E  P  +++D  + G+  F
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTEN-PIVVILDIMLPGIDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      + +  L         I G   GA+ +++KPFN   L   +  L + 
Sbjct: 65  KVCEILRKN--YPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRR 122


>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 243

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    VR          GF V  A +  EA      E   + LV+D  M  +  
Sbjct: 18  RTVLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESH-DALVLDVQMPELDG 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    LG D+ +  L         IAG  AGA+ +L KPF+   L   +  L +  
Sbjct: 77  VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 136

Query: 122 KSKDE 126
              D 
Sbjct: 137 HHSDR 141


>gi|26988605|ref|NP_744030.1| histidine kinase [Pseudomonas putida KT2440]
 gi|24983381|gb|AAN67494.1|AE016376_4 sensor histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 785

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  AT   EA E   +E   + +++D +M  +  +
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREE-FDLVLMDCNMPVMDGY 723

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ     ++ +  L      E+      AG N +L KPF RE L   +
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 777


>gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+ +    +         + GF V  A    EA E  + +   + +++D  M  
Sbjct: 1   MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGA-DLIIMDLMMPR 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   + V +  L  + +    + G   GA+ ++ KPFN   L   +    
Sbjct: 60  LSG-EEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNL 118

Query: 119 QMQKSKD 125
           +   S D
Sbjct: 119 RRYHSYD 125


>gi|283852211|ref|ZP_06369484.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
 gi|283572437|gb|EFC20424.1| response regulator receiver modulated diguanylate cyclase
           [Desulfovibrio sp. FW1012B]
          Length = 305

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD S     +         F V  ATS  EA    + E  P+ +++D  M  +   
Sbjct: 9   RVLVVDDSPSHLAILTESLRSE-FDVRVATSGAEALRLVD-ETPPDLILLDILMPDMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ V +L  + D      G   GA  +++KP     ++  +R   ++
Sbjct: 67  EVCRRLKADFATRNIPVIFLTAKNDVADETQGLAIGAVDYIIKPVTVPIVQARVRTHVEL 126

Query: 121 QKSKDENQFLD 131
           ++  D  + L 
Sbjct: 127 KRRGDLLETLS 137


>gi|269958888|ref|YP_003328677.1| response regulator [Anaplasma centrale str. Israel]
 gi|269848719|gb|ACZ49363.1| response regulator [Anaplasma centrale str. Israel]
          Length = 456

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      K+ +       + V  A S  EA +   +E  P+ +++D  M G+   
Sbjct: 4   RILVVDDLIANVKLLQAKLTKEYYNVLTAMSGEEAIQLA-REKHPDLILLDVMMPGMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEK-MIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R  P  T + V  +    +     + G  +GA+ FL KP N   L   +R L +
Sbjct: 63  ETCRRLRADPATTYIPVVMVTALDNTTDNRVNGISSGADDFLTKPINDVALFSRIRSLTR 122

Query: 120 MQKSKDENQF 129
            +   DE + 
Sbjct: 123 FKILVDELRL 132



 Score = 56.0 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 41  CEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGA 97
            +     +  ++D +  G       ++ R         +  LL E D  +++      G 
Sbjct: 195 FQNAESYDLFIVDLNF-GGDGLRLCSNFRSNNNTRYTPILVLLDESDDTEILSRAFEIGI 253

Query: 98  NSFLLKPFNRETLRFAMRELPQMQKSKDENQF 129
           + +++ P +   L        + ++ +D  + 
Sbjct: 254 SDYIMAPIDSNELLARANVQVKRKRYQDALRM 285


>gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1511

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LL+V+ + + ++V R L    G+ V  A +   A E  ++    + + +D  M  +   
Sbjct: 1172 RLLVVEDNEVNQQVARELLTQAGYTVDVAENGEVALEMVQRTPY-DLVFMDMQMPVMDGL 1230

Query: 63   IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A   +R++P    + +  +      +       AG N F+ KP + + L   +      
Sbjct: 1231 AATIAIRKLPGFAALPIVAMTANAMRQDREKCLAAGMNDFVAKPIDPQALFAVLTAWIAP 1290

Query: 121  QKSKD 125
            +  +D
Sbjct: 1291 KAGQD 1295



 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 11/137 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57
              +L+VD +   R V   +     F V  A S  EA    E    K      +++D  M 
Sbjct: 1025 RRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSVLEAARGKNQPFEVVLLDWQMP 1084

Query: 58   GVLEFIAHVRQMPLGTDVF--VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            G+       R           +  +      E +      G  + LLKP     L   + 
Sbjct: 1085 GMDGLETAERIRAKFDAPPPHLVMVTAFGREEVLRGAEDGGFEAVLLKPVTPSLLFDTLM 1144

Query: 116  ELP-----QMQKSKDEN 127
                    + +++ D  
Sbjct: 1145 RALGGFHEERRQAPDAQ 1161


>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|163803007|ref|ZP_02196893.1| putaive two-component response regulator [Vibrio sp. AND4]
 gi|159173181|gb|EDP58010.1| putaive two-component response regulator [Vibrio sp. AND4]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFEYAGMELDYADNGELGLKLAM-ENAFDIILLDLMLPRMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLALCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMTALIRR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A +  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKD 125
           +  + + 
Sbjct: 117 RRGEREA 123


>gi|329907282|ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547047|gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 242

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +     +  GF  F A++  E R+  +     + +V+D ++ G   
Sbjct: 5   TQILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTA-RIDLVVLDLTLPGEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R +   + + V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 64  LTLC-RNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 122

Query: 122 KSKDENQFLDA 132
            +   N  L  
Sbjct: 123 NALPPNMALSE 133


>gi|319954538|ref|YP_004165805.1| transcriptional regulator, crp/fnr family [Cellulophaga algicola
           DSM 14237]
 gi|319423198|gb|ADV50307.1| transcriptional regulator, Crp/Fnr family [Cellulophaga algicola
           DSM 14237]
          Length = 350

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LL++    +R+    L +  G+ V  A +         KEL+P+ ++ D  M    
Sbjct: 1   MKTILLIEDDRALRENTEELLDLAGYAVTTAPNGKIGI-LAAKELVPDIILCDIMMPEVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + +  +   +   +L  + + +++  G   GA+ +L KPF  E L  A+    
Sbjct: 60  GYGVLKALNEDKITKQIPFIFLSAKTEHKEIRKGMDLGADDYLTKPFEEEDLISAIESRL 119

Query: 119 QMQKSKDEN 127
              +    N
Sbjct: 120 AKHEILKLN 128


>gi|262401977|ref|ZP_06078542.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. RC586]
 gi|262351949|gb|EEZ01080.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. RC586]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + +A            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|238755039|ref|ZP_04616387.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           ruckeri ATCC 29473]
 gi|238706743|gb|EEP99112.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           ruckeri ATCC 29473]
          Length = 315

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I  ++    F+   + V  ATS  +A + C  +  P+ +++D  M G+  F
Sbjct: 5   KILIVDDHPINIQILYQAFS-ADYHVCMATSGKQAIDVCINQH-PDLILLDIEMPGMNGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++  P   D+ + ++   +D E        GA  F+ KP NR T+R  ++    +
Sbjct: 63  DVCARLKSSPDTQDIPIIFITAHIDEETETRCFNEGAVDFISKPINRNTVRARVKTHLLL 122

Query: 121 QKSKDENQFL 130
           +   D  + L
Sbjct: 123 KAQSDLLREL 132


>gi|182678198|ref|YP_001832344.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634081|gb|ACB94855.1| response regulator receiver modulated diguanylate cyclase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 457

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD + +  K+         F V  AT+  +A   CE     + +++D  M G+  F
Sbjct: 4   RILVVDDNPLNLKLLEARLTAEYFTVTTATNGFDALAICEAGGC-DIVLLDVMMPGLDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++Q P    + V  +         +AG  AGA+ FL KP +   L   +R L ++
Sbjct: 63  NVCRHIKQSPNTMHISVVIVTSLDQTADRLAGLEAGADDFLNKPIDEIALIARVRSLARL 122

Query: 121 QKSKDENQF----LDAI 133
               DE +     L AI
Sbjct: 123 HLVLDELRRRTQNLAAI 139



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 10/130 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLV+      +  +    D  + +   +          +   P+  +I   +       
Sbjct: 155 VLLVEDRVSTIERVQAALEDL-YPLEIVSDPGLVLSR-GENNPPDLCIISLGLADYDGLR 212

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIA---GARAGANSFLLKPFNRETLRFAMRELP 118
             + +R      +     LL  V+ E           G N +L++PF+   L    R   
Sbjct: 213 LCSQLRTGERTRNS---MLLALVEREDRQRLLTALDLGVNDYLIRPFDNHELIARTRTQM 269

Query: 119 QMQKSKDENQ 128
             ++  D  +
Sbjct: 270 LRKRYVDRLR 279


>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPDLDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHSSSEII 128


>gi|188583239|ref|YP_001926684.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179346737|gb|ACB82149.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 240

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +  +           V  A    E  +    +   + +V+D  + G     
Sbjct: 10  ILVVEDDREISALVARYLRANECRVSLAGDGRE-MDRVLADARVDLIVLDLMLPGEDGLS 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     + V +  L  + +    I G   GA+ +L KPFN   L   +R + + +
Sbjct: 69  LCRRLRAS---SQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 125

Query: 122 KSKDEN 127
            ++ ++
Sbjct: 126 GAEPQD 131


>gi|89901044|ref|YP_523515.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Rhodoferax
           ferrireducens T118]
 gi|89345781|gb|ABD69984.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodoferax ferrireducens T118]
          Length = 853

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD  +       ++  D  + +  A +  +A E   +   P+ +++D  M G+    
Sbjct: 9   ILIVDDVNENLHALMNILRD-DYAILAANTGEKALELARRVPQPDLILLDIKMPGMDGYS 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +AH++  P   D+ V ++    D      G   G   ++ KP N + L   +R   ++Q
Sbjct: 68  VLAHLKADPKTADIPVIFVTALADAADEARGLTLGVADYITKPVNPDLLHLRVRIQLELQ 127

Query: 122 KSKDE 126
           + + +
Sbjct: 128 RHRRQ 132



 Score =  127 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           SLL+VD              +  + +  A S  +A E  +    P+ +++D  M G+   
Sbjct: 147 SLLVVDDVPENIHELLDALKEE-YRIMVANSGPKALELVQGPTPPDLVLLDIVMPGMDGY 205

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++    G  + V ++ +    ++ + G   GA  F+ KPF+ + +R  +R   ++
Sbjct: 206 EVCQRIKASAAGNGIPVIFVTVVDATDQKVKGFDLGAADFISKPFDIDEVRARVRTHLEL 265

Query: 121 QKSKDENQFLDA 132
            + +   + L A
Sbjct: 266 ARLRFSLEQLVA 277


>gi|114321576|ref|YP_743259.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227970|gb|ABI57769.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 480

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD +    ++   +  + G+ V  A S   A +  +     + +++D  M      E
Sbjct: 14  VLVVDDNPANLRLMVSVLREGGYAVRVAPSGRLALDSVQARPA-DLILLDIRMPDLDGYE 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P   D+ V +L    +    + G   GA  ++ KPF  E +   ++    + 
Sbjct: 73  VCRRLKADPARHDIPVIFLSALCEPADKVRGFAVGAVDYITKPFVAEEVLVRVQSHLALH 132

Query: 122 KSKDENQFLDA 132
            S+   + L A
Sbjct: 133 ASQQRLEALVA 143


>gi|23013751|ref|ZP_00053613.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 238

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + ++D    +R + R +   +G+ V    S   AR+   +E  P+  ++D  +  +  
Sbjct: 5   KRIYVIDDEPDIRALLRQVLEGYGYQVTPLASGALARQAIRREP-PDLCIVDLGLPDMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR++       V  L         + G   GA+ +++KPF    L   +  + + +
Sbjct: 64  LT-LVRELWEDVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRR 122

Query: 122 KSKD 125
               
Sbjct: 123 DQLA 126


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+    A           +E+ P+ +V+D  +  +    
Sbjct: 7   VLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKF-REVAPDLVVLDLMLPVLDGLE 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++  +  L  +   +  + G  +GA+ +L+KPF+ E L   +R   + 
Sbjct: 66  VA-RRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 121


>gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator
           protein [Pseudomonas fluorescens WH6]
 gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator
           protein [Pseudomonas fluorescens WH6]
          Length = 263

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    +  +        GF    A     A E   + L P+ +++D  M  +    
Sbjct: 36  VLIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALE-LHQLLKPDLVLLDVMMPKLDGWM 94

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +A +R      +  V  L         + G R GA+ +++KPFN   +   ++ + + 
Sbjct: 95  VLAELRHRG---NTAVIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRR 150


>gi|295095071|emb|CBK84161.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALSLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
 gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
          Length = 224

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    ++ +    F    + V  A +  E  +     L  + +++D  M  +   
Sbjct: 5   RILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIMMPNLDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V + ++         + G   G + ++ KPF+   L   +  + + 
Sbjct: 65  TTCKMIR---NTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKR 121


>gi|269926249|ref|YP_003322872.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789909|gb|ACZ42050.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    +  V  +     GF V  A+   +A    + +  P+ +V+D +M  + 
Sbjct: 1   MK-VLVADDDLDMLDVTAYALRREGFNVIAASDGLQALRRWQMDH-PDVVVLDANMPKMN 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    ++  V  L    D + ++ G   GA+ ++ KPF+   L   +R + 
Sbjct: 59  GFEVCKRIREQ---SNTPVILLTALNDEDHIVQGFHIGADDYVTKPFSHRQLAMRIRAVA 115

Query: 119 QM 120
           + 
Sbjct: 116 KR 117


>gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 217

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +  + R      G+    A    EA +   ++   + +++D  +    
Sbjct: 1   MIKILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSY-DLILLDIMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + + + +    D+ V +L    + ++ + G R GA  ++ KPF    L   +  + 
Sbjct: 60  GYEVLEYAKSV----DIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVL 115

Query: 119 QMQKSKDENQFL 130
           +  K  ++   L
Sbjct: 116 RRYKKTEQKLRL 127


>gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 864

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVL 60
            ++L+V+ + I +KV   L    GF V  A +  EA +    +  P + +++D  M  + 
Sbjct: 742 KTVLVVEDNAINQKVASLLLKKAGFSVEIANNGQEALDMVMSKTSPYSLVLMDCMMPIMD 801

Query: 61  EF--IAHVRQMPLG---TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            F     +R+         + +  L   V  E +    ++G + ++ KPF +E +   + 
Sbjct: 802 GFAATEAIRKWEENQEKKRLPIIALTASVFVEDIDKCYQSGMDDYVAKPFRKELILEKLE 861

Query: 116 E 116
            
Sbjct: 862 A 862


>gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 1/132 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61
            +LLV+    + +  +   N   ++V       EA    E +    N  ++D  + G+  
Sbjct: 2   RILLVEDEPDLGEALKKALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLPGISG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + V  L  +   E  + G  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRALGRRS 121

Query: 122 KSKDENQFLDAI 133
                 QF   +
Sbjct: 122 PQLQPQQFQRGL 133


>gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +R   R  F    F V E  S  E       E  P+  ++D  + G+ 
Sbjct: 1   MK-ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEK-PDIAILDVMLPGMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       + +  L  + +    I G + GA+ ++LKPFN   +   ++ L + 
Sbjct: 59  GFEVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118

Query: 121 QKSKDEN 127
            +  +E 
Sbjct: 119 LEGINEE 125


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D   ++ K  R  F   GF V  A    EA    E     +++++D  +  + 
Sbjct: 17  MK-VLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGS-FDFIILDLMLPKID 74

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    +DVF+  L  +      I G   GA+ ++ KPFN   L   MR L 
Sbjct: 75  GITLCNRIRQQ---SDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLI 131

Query: 119 QMQK 122
           + Q+
Sbjct: 132 RRQE 135


>gi|167645552|ref|YP_001683215.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167347982|gb|ABZ70717.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 261

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R V        G+++  A+      E        + +V+D  + G    
Sbjct: 29  RILIVDDDPGIRDVVSDFLGRHGYVIDTASDSRT-MEQALARGPVDLIVLDIMLPGEDGL 87

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R++       +  L    +    I G   GA+ +L KP N   L   +R + + ++
Sbjct: 88  -AICRRLSAADGPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARIRAVLRRRQ 146


>gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1]
 gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum
           aromaticum EbN1]
          Length = 248

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R +      + GF V          +        + +V+D  + G    
Sbjct: 11  RVLLVDDDARLRDLLSRYLQEQGFTVKAVVDAPS-MDRALHREHFDLMVLDLMLPGEDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + +  L  + D    I G   GA+ +L KPFN   L   +  + + Q
Sbjct: 70  TICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHAVMRRQ 128


>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
 gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
          Length = 258

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+V+    + ++      D    +       +A +        + +V+D  + G+  L
Sbjct: 23  RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAW-DLIVLDLRLPGMGGL 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    +  L  +      + G   GA+ +L KPF+   L    + L + 
Sbjct: 82  DICRQLR--ERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRR 139

Query: 121 QKS--KDENQFLD 131
            +     EN  L+
Sbjct: 140 TRMNRHQENAELE 152


>gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
 gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
          Length = 878

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D +  +R   R   +   + V EA       E   + ++P+ ++ D  M  +    
Sbjct: 635 VLVIDDNGDIRTYLRSALSPI-YKVSEAVDGKNGLEMARR-IVPDLIISDIMMPVMDGLE 692

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F + ++Q    + + V  L      ++ + G   GA++++ KPF+   L   +  L Q +
Sbjct: 693 FCSQLKQDKAISHIPVILLTARSLDDQRVEGYEHGADAYIAKPFSLRLLLSRIDNLIQSR 752

Query: 122 K-------SKDENQFLDAI 133
           +       + DEN  L+ +
Sbjct: 753 RKLSQLFSNSDENDVLEKL 771


>gi|313499963|gb|ADR61329.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 785

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  AT   EA E   +E   + +++D +M  +  +
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREE-FDLVLMDCNMPVMDGY 723

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ     ++ +  L      E+      AG N +L KPF RE L   +
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 777


>gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 43/116 (37%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           ++++  + +R          G+ V EA S  +A E           ++D  + G+  F  
Sbjct: 1   MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNANPDIKVAILDVMLPGIDGFEV 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     + V  L      +  + G   GA+ ++ KPF+   L   +R L + 
Sbjct: 61  LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRR 116


>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Roseiflexus castenholzii DSM 13941]
          Length = 900

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD    +R +   L    G     AT   EA +   ++   + +++D  M  +  +
Sbjct: 4   RILVVDDHDYIRHLLVRLLTSQGHQTSVATGGREALDLLSQQS-FDLVLLDLMMPDMNGI 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ  +     V  +    D + +      GA+ +L KPFN   LR  +    + 
Sbjct: 63  EVLEQLRQQNVIYHTPVIVVSGVHDLDMVAQCIELGADDYLFKPFNDVLLRARVNASLER 122

Query: 121 QKSKDENQ 128
           +  +D  +
Sbjct: 123 KMLRDHER 130


>gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 227

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  V     +  G+         +A      +  P+ +++D  +   G L+
Sbjct: 10  VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V V  +   V+    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 69  ICRDLRKESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125

Query: 122 K 122
           +
Sbjct: 126 R 126


>gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 242

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + ++ R         V +  ++ +AR+   +    + L++D  +     
Sbjct: 14  RRILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQL-RSKCFDLLLLDRMLSDGDG 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +    G  +    +        ++ G  +GA+ +L+KPF+   LR  ++ L +  
Sbjct: 73  LTLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRS 132

Query: 122 KSKDENQ 128
             +  +Q
Sbjct: 133 AQQAADQ 139


>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
 gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +      + GF V  A +V  A +      LP+ +V+D  +      
Sbjct: 5   RILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRA-RLPDLMVLDWMLPDCDGV 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             IA +R+      + +  L    +      G   GA+ +L KPF+   L   +    + 
Sbjct: 64  SWIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRR 123


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +  +++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|264677348|ref|YP_003277254.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533046|ref|ZP_07046432.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262207860|gb|ACY31958.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718931|gb|EFI59902.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LLLV+    +R   +      G  V  A     A    +    P+ +V+D S+ G+    
Sbjct: 7   LLLVEDDSAMRTTLQRTLMRRGLHVDVAADGPSALAHWQT-REPDAVVLDLSLPGLDGLQ 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R   LG    V  L         + G  AGA+ +L KPF+ + L   +R L +  +
Sbjct: 66  VLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124


>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  +   +  + G++V  AT    A E   +    + +++D  +  +  
Sbjct: 3   KRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGE-FDLIILDVMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+      + +  L    + E  + G     + +++KPF+   L   +  + +
Sbjct: 62  FVVCEIIRKESS---MPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLR 118

Query: 120 MQKSKDEN 127
                +EN
Sbjct: 119 RANGLEEN 126


>gi|602401|gb|AAB36611.1| OmpR [Xenorhabdus nematophila]
          Length = 239

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     ++ GF V  A +  +  +          +++D  + G  + 
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQ-MDRLLTRESIQLIILDLMLPGEDDC 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           ++          + +  +  + +    I G   GA+ +L KPFN   L   MR + + Q
Sbjct: 65  LSAEELRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRLVLRRQ 123


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        G+ V  A     A     ++  P+ +V+D  +  +  F
Sbjct: 22  RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAI-RAARQFQPDAVVLDVMLPDLDGF 80

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +       V V +L      E+ +AG   G + ++ KPF+ E +   +R L + 
Sbjct: 81  EVLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 138


>gi|293370623|ref|ZP_06617175.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
 gi|292634357|gb|EFF52894.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
            3f]
          Length = 1339

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+V+    +R      F D  F + E+ +  EA E   K+  P+ ++ D  M  +  F 
Sbjct: 1085 VLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKT-PDLVISDIMMPEMDGFT 1142

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-M 120
                ++Q      + V  L  +   E  + G   GA+++++KPFN E L+  +  L    
Sbjct: 1143 LCRKIKQNVNLNHIPVILLTSKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLINTR 1202

Query: 121  QKSKD 125
            Q+ + 
Sbjct: 1203 QQLRK 1207


>gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 1   MDSL---LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M S+   LL++    +R       +  G  V  A +  +  E   +E  P+ +V+D  + 
Sbjct: 1   MTSVPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+  F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R
Sbjct: 60  GIDGFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIR 116

Query: 116 ELPQMQKSKDEN 127
            + +  + +  +
Sbjct: 117 AVLRRGERESTD 128


>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 226

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1838

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1718 KVLIVDDDVRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1777

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + +R+MP    + +  L  +           +GA+ ++ KP   + L   M +  + 
Sbjct: 1778 ATTSAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVEPDYLLSVMEQWMRG 1837

Query: 121  Q 121
            +
Sbjct: 1838 K 1838


>gi|188590423|ref|YP_001919717.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251779363|ref|ZP_04822283.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500704|gb|ACD53840.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243083678|gb|EES49568.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 230

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R             VF+A    EA E    E   + +V+D  M  + 
Sbjct: 1   MYNVLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEK-IHVIVLDIMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L  + +    I G   GA+ +++KPFN   L   ++   + 
Sbjct: 60  GIRTCLKIRE-TENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRR 118

Query: 121 Q----KSKDENQFL 130
                  +DE Q L
Sbjct: 119 YDKPLNIEDEEQIL 132


>gi|146280447|ref|YP_001170600.1| response regulator receiver [Pseudomonas stutzeri A1501]
 gi|145568652|gb|ABP77758.1| response regulator receiver [Pseudomonas stutzeri A1501]
 gi|327478664|gb|AEA81974.1| response regulator receiver [Pseudomonas stutzeri DSM 4166]
          Length = 129

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    +  + R++    GF+V  A    +A +   +   P+  ++D  +     
Sbjct: 7   KRILMVEDEEDIAFLIRYMLERHGFVVDHAADGRQALDHFAQAAPPDLTLMDIMLPYHDG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
           LE I  +R       V V  L  +     ++     GA+ ++ KPF  E 
Sbjct: 67  LELIERLRAQAGWESVPVLMLTAKAREVDIVRALELGADDYVTKPFQPEE 116


>gi|117168636|gb|ABK32300.1| Jer7 [Sorangium cellulosum]
          Length = 1762

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           + +          +   A E  ++      +++D  M  +  
Sbjct: 1642 KKVLVVDDDVRNIFAMTTILDAQQMKTVYVETGRAAIEMLQRTPDIEIVLMDIMMPEMDG 1701

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               I  +R  P    + +  +  +           AGAN ++ KP + E L   +R    
Sbjct: 1702 YDTIRAIRAKPEHHALPIIAVTAKAMKGDREKCFEAGANDYISKPVDPEHLLAMLRLWLH 1761

Query: 120  M 120
             
Sbjct: 1762 R 1762



 Score = 78.7 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V++          + +D GF    A     A     +E   N + +D ++  +    
Sbjct: 1375 VLIVENDASFAHFVMDVAHDHGFKAILAYRGGAALSIV-RERRVNAITLDINLPDMDGWR 1433

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMREL 117
             +  V++      + V  +      E+     R GA   L KP   R+ L    R L
Sbjct: 1434 VLDRVKRDLATRHIPVQVITT---DEERERALRMGATGVLCKPLKTRDALDETFRRL 1487



 Score = 46.0 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +++L +     R+    L       +    S  EA +    E   + L++   +  +  
Sbjct: 1496 RTVVLAEPDEAERQELVELLGGDDVTIRSVASGEEALDALLTEGA-DVLILHLDLPDMRC 1554

Query: 60   LEFIAHVRQMPLGTDVFVYY-----LLMEVD 85
             + I  + Q    T++ V       +    +
Sbjct: 1555 FDLIGQLAQGSGPTELPVLVYAPEEISAADE 1585


>gi|159899985|ref|YP_001546232.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893024|gb|ABX06104.1| response regulator receiver modulated diguanylate cyclase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 412

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +  + ++   +  + G+ V  A    +     + + +P+ +++D  M      
Sbjct: 4   RILVADDNEALSQLLELILVEHGYEVTLANDGGDLLAKAQLQ-IPDLMIVDILMPRIDGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R       + +  L      E ++ G   GA+ +++KPF    L   +R     
Sbjct: 63  EAIRQLRNDTRLAHIPIIVLTARTAIEDVVTGFELGADDYIVKPFQMPELLARVRAQLLR 122

Query: 121 QKSK 124
              +
Sbjct: 123 ATRR 126


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+   +       +  +  + V   +    A E  +     + +++D  +  + 
Sbjct: 1   MK-ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQT-YDYDLILLDVILPRLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G  + +  L       +   G  AGA+ +++KPF+ E L   +R L 
Sbjct: 59  GISLCRQIR--SSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118



 Score =  109 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L VD    +  + + L + +G  V       +  E   +++ P+ L++D  M     +
Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETL-RDVNPDLLILDVEMPYTNGI 440

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR  P  +++ + +L +  D E +      GA+ F+ KP     L   +    + 
Sbjct: 441 ELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500

Query: 121 QKS 123
            K 
Sbjct: 501 VKL 503



 Score = 90.3 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 15/128 (11%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            +L+ D   ++R   + L    G+ V    +  EA      +  P+ +V+D  M G+  + 
Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQH-PDVIVLDLLMPGMNGWE 1439

Query: 64   --AHVRQMPLGTDVFVYYL-----LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              A +++      + +                           ++ KP     L  ++R+
Sbjct: 1440 TMAMLKESTETKHIPIVICSVYKPTTNNQPSSD-------FVDWISKPVQESYLLHSLRQ 1492

Query: 117  LPQMQKSK 124
                   +
Sbjct: 1493 AIAKSSRR 1500



 Score = 69.8 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+V+    + ++   LF       F A +  EA     +E+ P+ L++D  +     F
Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAI-HLSQEVNPDLLILDLILPETDGF 1560

Query: 63   IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP-FNRETLRFAMRELPQ 119
                 +++     ++ V     +   E      + G   FL K     +     + EL Q
Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620

Query: 120  M 120
             
Sbjct: 1621 R 1621


>gi|67920984|ref|ZP_00514503.1| GGDEF [Crocosphaera watsonii WH 8501]
 gi|67857101|gb|EAM52341.1| GGDEF [Crocosphaera watsonii WH 8501]
          Length = 595

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD      ++   +    G  V   TS   A     K + P+ +++D  M  +   
Sbjct: 12  NILIVDDKPANLRILSTILTKAGHKVRAVTSGNMAL-ITAKTMPPDIILLDVKMPDIDGY 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P   ++ + +L    D E  +    AG   +++KPF  E +   +     +
Sbjct: 71  QVCQKLKQFPETAEIPIIFLSALQDVENKVKAFEAGGVDYIIKPFQFEEVLARVSIHISL 130

Query: 121 QKSKDENQFLD 131
           + + ++ Q L+
Sbjct: 131 KHAHNQLQKLN 141


>gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  ++LV+ + ++R+         G    E  +     +   +E + + +++D  +    
Sbjct: 1   MSCIMLVEDNTLIREAVAGYLQLDGHKTVEFDTGAGVLDAVRRE-IADLIILDVMLPDGN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + +   + V + +L  +      I G   GA+ ++ KPF+ + L   ++ L + 
Sbjct: 60  GFALA-KSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVQALLRR 118

Query: 121 QKSKDE 126
                E
Sbjct: 119 SGGSAE 124


>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 232

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  +      + G+ V    S  +A      +   +  V+D  +  +  
Sbjct: 3   THILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQE-FDLAVLDIMLPDIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  +  +R         V  L         I G   GA+ +++KPF    L   ++   +
Sbjct: 62  FELLRTIRADRTY---PVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302]
 gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302]
          Length = 205

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ VF A    EA E  +++   + ++ D  M  +  
Sbjct: 3   KTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKP-IDLIITDIMMPRMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +           D    ++  +   +  I G   GA+ F+ KPF+   L   +  +   
Sbjct: 62  YDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILHR 120


>gi|261211256|ref|ZP_05925545.1| transcriptional regulator CpxR [Vibrio sp. RC341]
 gi|260839757|gb|EEX66368.1| transcriptional regulator CpxR [Vibrio sp. RC341]
          Length = 228

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + EA            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVSDE--VDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|71280786|ref|YP_269105.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71146526|gb|AAZ26999.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 236

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD +  +R+       D G  V       +A     K  + + +++D  M G  
Sbjct: 1   MTHILIVDDNPDIRQPLARYLGDHGMRVTSV-DGGKAMRETLKNSVIDLILLDIMMPGED 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +  R +     + V  L    +    + G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GL-SLCRFVQSNLKIPVILLTALTEDTDRVVGLEMGADDYVAKPFNPRVLLAKIKAVLRR 118

Query: 121 QKS 123
            +S
Sbjct: 119 SQS 121


>gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 229

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ R      G+ + EA +   A E  E+E  P+ +++D  + G+   
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEK-PDLVLLDLGLPGMGGH 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G D+ V  L    D   ++     GA+ ++ KPF    L   +R   + + 
Sbjct: 66  ELLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 123 SKD 125
            + 
Sbjct: 126 QQQ 128


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+  + + ++         + V  A    EA    +KE   + +++D  +     
Sbjct: 3   KRILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEK-FDLILLDLMLPKVNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E + H+R+    + V V  +  +        G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIR 118

Query: 120 MQKSKDENQ 128
                 E +
Sbjct: 119 RATLYAETE 127


>gi|315649484|ref|ZP_07902569.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315274957|gb|EFU38332.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 1219

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +   +   V  A +  EA E  +     + +++D  M  +  
Sbjct: 1099 KKILLVDDDIRNVFALSSVLEGYNMEVTFAENGREAIELLQDNPDYDLVLMDMMMPEMDG 1158

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R+MP    + +  L  +   E       AGA+ ++ KP   E L   MR   
Sbjct: 1159 YEAMRLLREMPEFEKLPIIALTAKAMKEDRAKCIEAGASDYMKKPIQTEQLLSLMRVWL 1217



 Score = 77.5 bits (191), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            M  LL+V+   I R     L       +  A++  EA     K+   + +V+D  +  + 
Sbjct: 952  MKHLLIVEDDDIQRNSIIELIGHDDVSITAASTGAEALSELRKQRY-DCMVLDLMLTDMT 1010

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
              E +  +R      D+ +     +    K     R  A S ++K   + E L  
Sbjct: 1011 GFELLDQIRDDENLMDLPIIIYTGKDLDSKEEMQLRKYAESIIIKDVKSPERLLD 1065



 Score = 72.1 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+++      ++   +    GF    A       E   K   P+ +++D  +  +    
Sbjct: 833 LLIIEDDVKFARILLDMARGRGFKALVALQGDIGLEMA-KSYRPDAIILDIQLPVIDGWS 891

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
            +  ++   +   + V+ + +    +++  G   GA ++L KP +RE L  A
Sbjct: 892 VMGELKSSAVTRHIPVHVISV---VDEVKQGLMMGAIAYLKKPSSREALENA 940


>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 545

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESME--GV 59
            +L+ + + + +K+ + +    GF V  A +  EA +  ++     + +++D  M     
Sbjct: 423 RILIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDG 482

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+     ++ +  +              +G + ++ KP  +  +  A+     
Sbjct: 483 FEATKAIRE-AGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQMT 541

Query: 120 M 120
            
Sbjct: 542 R 542


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL++    + ++ R       F +    S  +  E    E   + +++D  +    
Sbjct: 1   MKKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEH-FDLVILDIMLPKVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R      D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEVCKQIRA---AKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHL 116

Query: 119 QMQKSKDENQ 128
              +   + Q
Sbjct: 117 ARYERLSDKQ 126


>gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 705

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S        E +  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|239942886|ref|ZP_04694823.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 256

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+V+    +R+  +     +G+ V  A       E        + L++D  +     +
Sbjct: 26  SVLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAH-DLLILDVMLPALDGI 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V  +    D   ++AG  AGA+ +++KP +   +   +R L + 
Sbjct: 85  GLCHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 141


>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 243

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 15  NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 74  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 131 RYTYFNQN 138


>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|218130473|ref|ZP_03459277.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697]
 gi|217987352|gb|EEC53682.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697]
          Length = 229

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G++V  A S  EA +        N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYVVDTANSAEEALKL--DISAYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR 122

Query: 121 QKSKDENQFLDAI 133
            +  +  +  + I
Sbjct: 123 TQQGERERAPEQI 135


>gi|307151036|ref|YP_003886420.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
 gi|306981264|gb|ADN13145.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
          Length = 121

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+ +   +++        G+ V  A    EA E    +  P+ +V D  M  + 
Sbjct: 2   MTTVLVVEDTLSEQELISLYLRKAGYTVITANDGKEAIEKTLAQK-PDVIVTDVVMPNMN 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            F     +++ P    + V     +      + G + G + ++ KPF  E L  A++ +
Sbjct: 61  GFELCRSIKKNPQTQKLPVIACTSKTQDLDRLWGMKQGIDVYVTKPFTPEELIRAVKSV 119


>gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF+V  A     A     + + P+ +V+D  + G+   
Sbjct: 5   TILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALA-RSVKPDLVVLDVMLPGLDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   T VFV  L    D    + G   GA+ +L KPF+   L   ++ + +   
Sbjct: 64  EVC-RQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR-- 120

Query: 123 SKDENQFLDAI 133
               N+ + AI
Sbjct: 121 ----NRVIRAI 127


>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 832

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    + +V   L ++    V  A S  +A     +E   + +++D  + G+  F
Sbjct: 8   TVLLVEDDPRMHEVLSALLHEDNITVIHAPSGQQAIAMV-QEKHYDLMLLDLGLPGMNGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +   PL   + V  L         + G   GA  +L KPF    LR  +    + 
Sbjct: 67  EVLKQLHDHPLERPIPVIVLTAWNSTTDKLRGFELGAVDYLTKPFEAAELRARLCAALRT 126

Query: 121 QKSKDEN 127
           +  +D+ 
Sbjct: 127 KHLQDQL 133



 Score =  113 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 11/128 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL D + I +KV   L    G+    A +  E  +  E++   + + +D  M  +   
Sbjct: 551 RVLLCDDNLINQKVALRLLQQMGYKADVANNGLECLKALERQPY-DLIFMDVQMPEMDGL 609

Query: 63  --IAHVRQMPLGTDVF--------VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
                +R+                +  +              AG + +L KP   + +R 
Sbjct: 610 QATQQIRRRQQDPSHPAHFKSPIFIIAITANAMQGDRDKCIAAGMDDYLAKPVRTDDIRL 669

Query: 113 AMRELPQM 120
            +      
Sbjct: 670 IIERWGSR 677



 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD +   R++     + +G +   A+S  +A ++  K    +  ++D  M  +   
Sbjct: 408 RLLIVDDNPTNRRILTLQTSKWGMIPRSASSGSQALDWMAKGEAFDLAILDMQMPDMDGL 467

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANS-FLLKPFNRETLRFAMRELP 118
           +    +R++P    + +  L           G  + A +  L KP     L   +  + 
Sbjct: 468 MLAKRIRELPGSQMMPLVLLTSMGLRTD-SPGFTSVAFASCLTKPIKPAQLHEVLMRVV 525


>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
          Length = 231

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+VD  H +  +      +  + VF+  +  EA + C  +   +  ++D  + G   
Sbjct: 3   NKILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALD-CIDKTELDLAILDIMLPGASG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L     +R         +  L  +      I G   GA+ ++ KPF    L   ++   +
Sbjct: 62  LSICQKIRDKYTY---PIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLR 118

Query: 120 MQK 122
             K
Sbjct: 119 RYK 121


>gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC
 gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33]
          Length = 651

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+   ++ KV         ++V           +       + +++D  +  + 
Sbjct: 1   MK-ILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTY-GSTFEYDLIILDIMLPNLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G  V +  L  + +    + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 59  GISLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR 118



 Score =  103 bits (259), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           + ++++D      +    L   +GF V       +     +  + P+ LV+D +M     
Sbjct: 526 NKVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQA-VTPDALVLDVNMPQING 584

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R  P    + V +L +  D          G + +L KP     L   +    Q
Sbjct: 585 FELCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQ 644

Query: 120 MQKS 123
             ++
Sbjct: 645 RVRA 648



 Score = 40.6 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 35/133 (26%), Gaps = 25/133 (18%)

Query: 9   SSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-------LPNYLVIDESMEGV-- 59
            +   + +        G  +  A +   A      E         P+ +++   +  +  
Sbjct: 391 DNEFNQSIVAVA-ASRGIRIQIAPTPDIAPAMLTNEPVLDGFGEDPDVILM--RLPSMPS 447

Query: 60  ---------LEFIAHVRQM----PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106
                     E     + +         + +  +    +    +   R G   FL+ P  
Sbjct: 448 RAEVIEQPNSELSNIWKTLQTFAERYPKLPIVVIGDRGEMSDRLEAMRRGGKLFLVTPTP 507

Query: 107 RETLRFAMRELPQ 119
            E +   +  L +
Sbjct: 508 PEQIVDTVVNLLR 520


>gi|315128019|ref|YP_004070022.1| chemotaxis response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016533|gb|ADT69871.1| chemotaxis response regulator [Pseudoalteromonas sp. SM9913]
          Length = 120

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA    EA    +++   + ++ D +M  + 
Sbjct: 1   MKRILAVDDSASMRQMVSFTLKTAGFDVTEAKDGSEALAIAKQQG-FDAVISDVNMPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R +P      +  L  E   +K + G  AGA  +++KPFN + L   ++++ 
Sbjct: 60  GITLIRELRGLPNYKFTPLLMLTTESGMDKKVEGKAAGATGWIVKPFNPDQLLAVLKKVI 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
 gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
          Length = 236

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLVD    +      +    G++V    +     E  +     + L++D  +    
Sbjct: 1   MK-ILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTY-DLLILDWMLPEKT 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+   G ++ V +L  +   +  + G  AG + +L+KPF    L   +R L 
Sbjct: 59  GLEICQELRRQ--GKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|207724862|ref|YP_002255259.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206590087|emb|CAQ37048.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 245

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLSQQGFAVSVMHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122

Query: 122 KS 123
           ++
Sbjct: 123 QA 124


>gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
 gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +      +  G+ V +A    EA E  +KE     L+ID  M  + 
Sbjct: 5   MYNILVCDDDKDIVEAIDIYLSKEGYNVIKAYDGMEAMEILKKED-IQLLLIDVMMPRLD 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  GIRATLKIREK-SSIPIIILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRR 122


>gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
 gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
          Length = 236

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+ +  + ++ R    D G             E   +E   + +V+D  + G+
Sbjct: 1   MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERF-REGDIDLVVLDLMLPGM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R  P    V V  L  +      + G   GA+ +L KPF+   L   ++ L
Sbjct: 60  DGLSVCREIRSGPGY--VPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKAL 117

Query: 118 PQM 120
            + 
Sbjct: 118 FRR 120


>gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72]
 gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72]
          Length = 235

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +  +  +     G+         +A            +++D  +     
Sbjct: 3   RRILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGADYALVILDVGLPDQSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R+    +DV V +L    D    I G   GA+ ++ KPF+   +   +R + +
Sbjct: 63  FDVCRALRRE---SDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
          Length = 246

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    VR          GF V  A S  EA      E   + LV+D  M  +  
Sbjct: 21  RTVLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESH-DALVLDVQMPELDG 79

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    LG D+ +  L         IAG  AGA+ +L KPF+   L   +  L +  
Sbjct: 80  VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 139

Query: 122 KSKDE 126
              ++
Sbjct: 140 SHTEQ 144


>gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + ++        G+         E   +   +  P  +++D  + G    
Sbjct: 4   TILIVEDEPKIARLVADYLQQSGYATHHLAHGDEVMPWL-ADHAPALILLDLMLPGTDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  L   V+    + G   GA+ ++ KPF+   +   ++ + +   
Sbjct: 63  TLCRRIGDQYPALPVIMLTARVEEVDRLLGLELGADDYICKPFSPREVVARVKAVLRRLH 122

Query: 123 SKDEN 127
            + E 
Sbjct: 123 PQTEE 127


>gi|17227925|ref|NP_484473.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17129774|dbj|BAB72387.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 276

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+++   + R +        GF V  A +     +   +E LP+ ++ D  M  +  
Sbjct: 6   NTILVIEDDTVTRNLYLKGLKIEGFNVIGAENGVVGVQKA-QEHLPDIIICDIMMPQMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +RQ  L   +   +L        +  G   GA+ ++ KP   + L  A+    +
Sbjct: 65  YSVLTILRQDSLTAGIPFIFLTASDMRGDLRKGMELGADDYITKPSTLDELLKAIATRLR 124

Query: 120 MQKS 123
            Q S
Sbjct: 125 KQAS 128


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +  +      GF     ++   A E   +E   + +++D  + G+  
Sbjct: 5   TRVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEK-FDIVLLDVMLPGMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR++   ++V +  L      E  + G   GA+ ++ KPF    L   +    +
Sbjct: 64  IEICRRVREI---SNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALR 120

Query: 120 MQKSKD 125
            +   +
Sbjct: 121 RRDLAE 126


>gi|254881198|ref|ZP_05253908.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
 gi|254833991|gb|EET14300.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 4_3_47FAA]
          Length = 1408

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRAYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 7/124 (5%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   I+R++ +    + G+ + EA    EA    E E   + +++D  +  +
Sbjct: 1   MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFE-EYEVHLIILDIMLPEL 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L
Sbjct: 60  DGWAVCRRIRKK---SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRL 116

Query: 118 PQMQ 121
            + +
Sbjct: 117 MESR 120


>gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 239

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    VR +  +      F    A +  EA          + + +D  +  +  
Sbjct: 5   TRILIIEDDRAVRNLISNTLKINRFNYDLAVNGSEAL-LLFTTNKYDIVFVDLGLPDIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            I  +++    +   +  +    + E  I    AGA+ FL KPFN E L   +R   +  
Sbjct: 64  -IDLIKKFREFSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRRL 122

Query: 122 KSKDENQ 128
              + N+
Sbjct: 123 NYSENNR 129


>gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
 gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + +A            E   + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE--IDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
 gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|86144202|ref|ZP_01062538.1| two-component system, transcriptional regulatory protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85829332|gb|EAQ47798.1| two-component system, transcriptional regulatory protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 238

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMNDYDVTHAKNGMEGFEKFKKDD-FDLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           DV + +L  +   E ++ G + GA+ +L KPF+ E L   ++ +   +
Sbjct: 65  FTLAKEIREKNEDVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMLRK 124


>gi|332880752|ref|ZP_08448424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681260|gb|EGJ54185.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 937

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             LL+V+ +   R    H F+   F V EA    E  E   +E  P+ ++ D  M     
Sbjct: 680 KKLLIVEDNADFRAYLVHEFSS-DFDVVEAGDGAEGEEMVREEW-PDLVISDLMMPKRDG 737

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           + F   ++     + +    L  ++  +  I   +AGA+S++ KPFN E L+  +++L +
Sbjct: 738 IAFCQRMKNDIHTSHIPFILLTAKMSDDARIESYKAGADSYISKPFNFEMLQVRVQKLIE 797

Query: 120 MQKSKDE 126
            ++++ E
Sbjct: 798 QRETRKE 804


>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
 gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +    V++  S  EA   C      +  ++D  +  +   
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEAL-VCIGSTDFDLAILDIMLPDISGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120

Query: 121 QK 122
            K
Sbjct: 121 YK 122


>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
          Length = 996

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61
            +L+V+ +   +++ R L  D G +V  A    EA +  +      + +++D  M  +  
Sbjct: 635 RILVVEDNQNNQQIARELLEDEGAIVTLAAHGQEAIDRLKATPQGFDLVLMDLQMPVMDG 694

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                ++R       + +  +          A   AG N  + KPFN   L   +++  
Sbjct: 695 INATQYIRSHLTLHTLPIIAMTANAMVSDRQACLAAGMNDHIGKPFNLRELIQTIQKHL 753



 Score = 86.8 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESMEGV 59
           +L+VD +   R + + +    G+ V  A    +A     ++       + L ID  M G+
Sbjct: 486 VLMVDDNPTARSLLQQMALTLGWRVDCAAEGEQALTLIAQQQQAGDPYDVLFIDWLMPGL 545

Query: 60  LE--FIAHVRQMPLGTDVF-VYYLLMEVDFEKMIA-GARAGA-NSFLLKPFNRETLRFAM 114
                I  +R       +  +  +        +       G  + FLLKP     L  ++
Sbjct: 546 DGWQTIQRLRSRLHEKQLPLLVMVTANDRECLLQRSSEEQGILDGFLLKPVTPLMLLDSV 605

Query: 115 RELPQMQKSKDE 126
               + +++  +
Sbjct: 606 AGALRERQNLTQ 617


>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R          G  V  A +  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKD 125
           +  + + 
Sbjct: 117 RRGEREA 123


>gi|237799880|ref|ZP_04588341.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022735|gb|EGI02792.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 464

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    VR +   L  +  +    A S  +A    + E  P+ +++D  M G+   
Sbjct: 7   TILIVDDDVHVRDLLEVLLRNQHYETLTAESGEQALAMID-ERAPDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP     L   +R L ++
Sbjct: 66  EVASQLKARKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVESAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|108763029|ref|YP_631993.1| sigma-54 dependent DNA-binding reponse regulator [Myxococcus
           xanthus DK 1622]
 gi|34329404|gb|AAQ63906.1| mutant NtrC-like activator [Myxococcus xanthus]
 gi|108466909|gb|ABF92094.1| sigma-54 dependent DNA-binding reponse regulator [Myxococcus
           xanthus DK 1622]
          Length = 477

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDF-GFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
             +L+VD    VR   R +     G  V EA    +A E          ++ D  M  + 
Sbjct: 11  TRVLVVDDDAGVRFTLREMLKSLSGVEVDEAVDGEDALEKLSARPY-ELVISDLRMPRMD 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  +         +   +AGA  +  KPF+ + L   +    + 
Sbjct: 70  GMELVRRLSLFSRSPRVIVITAHGSERFAVEAMKAGAYDYFRKPFDVDELLAVVSRALES 129

Query: 121 QKSKDENQFLD 131
            + ++EN  L 
Sbjct: 130 VRLREENARLS 140


>gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073]
 gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073]
          Length = 240

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +LL++  + +  + R    D G+ +        AR   +K+   + +++D  +     
Sbjct: 6   KKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTW-DAVILDLMLPNVNG 64

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE   ++RQM     + V  +         + G   GA+ +L KPF+   L   ++ L +
Sbjct: 65  LEICRYIRQM--TRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFR 122

Query: 120 MQKSKDENQFLD 131
            Q++  +N  L 
Sbjct: 123 RQEAMGQNILLA 134


>gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
          Length = 262

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +R++         F V       EA            +V+D  + G  
Sbjct: 27  MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREA-RRAYLNGHYQLVVLDLMLPGES 85

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F   +R     + V +  L    +    I G   GA+ ++ KPFN   L   +R + 
Sbjct: 86  GIDFARWLR---GESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVL 142

Query: 119 QM 120
           + 
Sbjct: 143 RR 144


>gi|148549046|ref|YP_001269148.1| histidine kinase [Pseudomonas putida F1]
 gi|148513104|gb|ABQ79964.1| histidine kinase [Pseudomonas putida F1]
          Length = 785

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  AT   EA E   +E   + +++D +M  +  +
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREE-FDLVLMDCNMPVMDGY 723

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ     ++ +  L      E+      AG N +L KPF RE L   +
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALV 777


>gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 229

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M+ +++++    VR+V R      G  V    +V EA +        + LV+D  + G  
Sbjct: 1   MNHVVVIEDEATVREVLRFHLERAGLTVSAYAAVAEAEDALAGA---DALVLDWMLPGES 57

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L  +  +R       + V  L       + + G   GA+ +L KPF    L   +R L 
Sbjct: 58  GLGLLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVRALL 117

Query: 119 QMQKSKDENQF 129
           +  + +   Q 
Sbjct: 118 RRTQPEQPQQL 128


>gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 392

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 8/138 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L VD       + + + +   + +  A+   EA E   KE  P+ +++D  M      
Sbjct: 12  TILAVDDIATNIMLLKAVLSRAKYKIVTASGGYEAIEKASKE-APDLILLDIMMPDLDGY 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR----- 115
           E I H++  P   D+ V +L    + E ++ G + GA+ ++ KPFN E L   +      
Sbjct: 71  EVIKHLKADPATQDIPVIFLTALHNPEDIVKGFKLGASDYVSKPFNHEELITRVTHHIYL 130

Query: 116 ELPQMQKSKDENQFLDAI 133
              Q    +  ++    +
Sbjct: 131 AAAQRTIMQQRDELQATV 148


>gi|317051506|ref|YP_004112622.1| sigma-54 factor interaction domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946590|gb|ADU66066.1| sigma-54 factor interaction domain-containing protein
           [Desulfurispirillum indicum S5]
          Length = 487

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R   R      G+ V  A           +    + ++ D  M  +  
Sbjct: 6   KTVLVVDDEDQMRLALRETLTRAGYEVITAFDGNNGLSKL-QNNSIDAVITDLRMPVMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                + +     + +  +         +   ++GA  +++KPF+ E +   +  + Q  
Sbjct: 65  MEFLQKALQEKPGLPIVLMTAYATVNTAVDAMKSGAFDYIMKPFSPEVIESTLERVFQYH 124

Query: 122 KSKDEN 127
            + ++N
Sbjct: 125 GALEQN 130


>gi|282165251|ref|YP_003357636.1| putative response regulator [Methanocella paludicola SANAE]
 gi|282157565|dbj|BAI62653.1| putative response regulator [Methanocella paludicola SANAE]
          Length = 128

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 4/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    + +V + +    G+ V  A S  EA +  EKE +P+ +++D  M  + 
Sbjct: 1   MTKIMVVDDEPDLLEVVKLILESDGYQVVTANSGQEALDKIEKE-MPDLVLLDIIMPRMD 59

Query: 61  EFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGAR-AGANSFLLKPFNRETLRFAMREL 117
            +     ++      D+ V  L  +      + G      + ++ KPF R  L   ++ +
Sbjct: 60  GWEVFSRIKGNTKTHDIPVIMLTAKDQRIDKLIGLHVVRVDDYITKPFGRAELLERIKRV 119

Query: 118 PQMQKSKDE 126
            + +    +
Sbjct: 120 LEEKHKVAQ 128


>gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+    V ++      + G+ V  A    +A E    + + + +++D  +  + 
Sbjct: 1   MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAV-DLVILDILLPQMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     TD+ V  L      E ++ G   GA+ ++ KPF    L+  +R L 
Sbjct: 60  GLDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLL 118

Query: 119 QMQ 121
           + +
Sbjct: 119 RRK 121


>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 220

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL++    +           G+ V        A      E   + +V+D  +  +   
Sbjct: 2   RLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSET-FDAVVLDLGLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V V  L      E  IAG  AGA+ +L+KPF+   L+  +R L +   
Sbjct: 61  EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 123 SKDE 126
            +  
Sbjct: 121 GRAR 124


>gi|197116683|ref|YP_002137110.1| sigma-54-dependent transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086043|gb|ACH37314.1| sigma-54-dependent transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 456

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD  H++R          G+ V  A +  +A     +E  P+ +++D  + G+   
Sbjct: 5   KIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLA-REEQPDLVLLDYHLPGINGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L  D+ V  +  +   E  +   R GA  ++ KPFN + +   +R+  +  +
Sbjct: 64  EVLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVIRKALETSE 123

Query: 123 SKDENQFLDA 132
            + E   L +
Sbjct: 124 LRREVVQLRS 133


>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L+V+     R +   L ++ GF V EA+S  EA E C     P+ +++D  M  +  
Sbjct: 1008 RSILIVEDQPNNRLLMIKLLSEIGFEVREASSGQEAIEIC-STWQPDLILMDMRMPVMNG 1066

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118
            F     +  M       +  L       +  A   AG + F+ KPF RE L   +R+   
Sbjct: 1067 FEATQQINAMSFAKKPIIIALTANTFEAEKQAIFNAGCDDFIGKPFQREELLEMIRKYLG 1126

Query: 119  -QMQKSKDENQFLDA 132
             +   +KDE++ L++
Sbjct: 1127 VEYIYAKDESETLNS 1141


>gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 222

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+V+    +        N  G+ V       +A      E   + +++D  + G   L
Sbjct: 2   RLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPY-DLIILDLGLPGVPGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +   R    G    V  L     + + I G +AGA+ +L KPF+ E L   ++ L + 
Sbjct: 61  EVLRKWRAD--GLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRR 118

Query: 121 QKSKDENQFLDA 132
              +   Q L A
Sbjct: 119 SHGQANQQTLQA 130


>gi|83950753|ref|ZP_00959486.1| response regulator [Roseovarius nubinhibens ISM]
 gi|83838652|gb|EAP77948.1| response regulator [Roseovarius nubinhibens ISM]
          Length = 405

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+VD S + R++   L   +G+ V EA S  EA   C+ E LP+ ++ D  M G+    F
Sbjct: 2   LIVDDSRLQRRIAGGLLRRWGYRVREAGSGAEALALCD-EALPDLVLSDWMMPGMSGPEF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RELPQ 119
               R++      +   L  + D E++ AG  AGA+ FL KP N   LR  +     + +
Sbjct: 61  CTAFRRLAGARYGYFILLTAKSDKEEVAAGLDAGADDFLTKPVNGGELRARISAGERILR 120

Query: 120 MQKSKDENQFL 130
           MQ+   E   L
Sbjct: 121 MQREMVEKNRL 131


>gi|332880933|ref|ZP_08448603.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681107|gb|EGJ54034.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1366

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
            LLVD +  +  V   +F+     V  A    EA    E   + + ++ D  M  +     
Sbjct: 1116 LLVDDNVDLLDVMCRVFSHR-HKVLLAHDGIEAVAVIENNAV-DVIISDVMMPNMDGLEL 1173

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              H++     + + V  L  +   E  I   +AG + ++ KPF    L   +    + ++
Sbjct: 1174 CRHLKADINTSHIPVILLTAKNAPEDRIECYKAGCDGYVAKPFELRVLEARVESFLEHKR 1233


>gi|325916362|ref|ZP_08178637.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325537410|gb|EGD09131.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 242

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+     +  G+ V  A +V + R    +   P+ +V+D  M G    
Sbjct: 10  RVLVVDDDPDLRKLIGEFLSTHGYQVDVAENVADMRTRMAQH-RPDLIVLDVMMPGEDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A            V  L    +    I G   GA+ +L KP N   L   +R L +  +
Sbjct: 69  SAARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQ 128

Query: 123 SKDEN 127
           + +E 
Sbjct: 129 ASNEQ 133


>gi|294627682|ref|ZP_06706264.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598034|gb|EFF42189.1| two-component system regulatory protein, OmpR family [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 259

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 28  VLVVDDDPDLRKLIGEFLSAHGYQVDMAGNVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 86

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 87  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146

Query: 124 KDEN 127
            +E 
Sbjct: 147 SNEQ 150


>gi|293393586|ref|ZP_06637896.1| transcriptional regulatory protein CpxR [Serratia odorifera DSM
           4582]
 gi|291423921|gb|EFE97140.1| transcriptional regulatory protein CpxR [Serratia odorifera DSM
           4582]
          Length = 232

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L    GF +  A    +A    +  +    L I    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLEMEGFTIVVAHDGEQALSLLDSSIDLLLLDIMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQH---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLD 131
               ++ Q +D
Sbjct: 118 SNWSEQQQNVD 128


>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 229

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L++D    + ++        GF +    +  E       +   + +++D  + G+   
Sbjct: 6   KILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVI-DSDFDLIILDVMLPGMGGF 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R +       +  L  + D    I G   GA+ +L KP+N   L   ++ + + 
Sbjct: 65  DVLKTIRSV---KMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKAILRR 121


>gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08]
 gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07]
 gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08]
 gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L N  GF+V   ++  EA     K    +  +ID S+    
Sbjct: 1   MKRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNK-FDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     D+ V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTICTEIKEN---QDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
 gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A    E +   + +++D  M  +   
Sbjct: 9   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQD-IHLIIMDIMMPKMDGI 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 68  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 124


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    ++++ +       + V  A+   E      K+   + +++D  M  
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQS-FDLILLDVMMPN 59

Query: 59  VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R     ++V +  L    + E  + G   G + ++ KPF+   L   +  
Sbjct: 60  LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 116

Query: 117 LPQMQKSKDENQFL 130
           + +    K+ N  L
Sbjct: 117 VLRRSYDKNVNNHL 130


>gi|158337064|ref|YP_001518239.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158307305|gb|ABW28922.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 363

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R +   +     F V EA           +E +P+ ++ D  M    
Sbjct: 1   MSKVLVIEDQDDIRSIVCEILIAESFNVIEAEDGHIGV-LLAQEEMPDLVICDIMMPEFD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +RQ P    V   +L  +     +  G   GAN +L KPF R+ L  A+    
Sbjct: 60  GYSVMTQLRQNPYLQSVPFIFLTAKASKTDLRLGMELGANDYLTKPFTRDELLGAVNAQI 119

Query: 119 Q 119
           +
Sbjct: 120 E 120


>gi|160893166|ref|ZP_02073954.1| hypothetical protein CLOL250_00712 [Clostridium sp. L2-50]
 gi|156865249|gb|EDO58680.1| hypothetical protein CLOL250_00712 [Clostridium sp. L2-50]
          Length = 229

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M+S+L++D    +  + +            A    E     EK     + +++D  M  +
Sbjct: 1   MNSVLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDM 60

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   ++++    +V V  L  + D E  ++G R GA+ +L KPF    L   +  L +
Sbjct: 61  NGF-QVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|150003574|ref|YP_001298318.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
 gi|149931998|gb|ABR38696.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Bacteroides vulgatus ATCC 8482]
          Length = 1408

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++L+V+ +  +R   R +  ++ + V EA+   EA    + + + +++V D  M  +   
Sbjct: 1155 TILVVEDNKDMRAYIRSILAEY-YNVLEASQGEEALTVLQSQNV-DFIVSDLMMPVMDGM 1212

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + +    L  +   E  I   R G + +LLKPF+   L   +  + + 
Sbjct: 1213 ELSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILEN 1272

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1273 RKRFQQ 1278


>gi|325922587|ref|ZP_08184341.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325546937|gb|EGD18037.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 242

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 11  VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAE-MRKSIAQRRPDLIVLDVMMPGEDGLS 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 70  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 129

Query: 124 KDEN 127
            +E 
Sbjct: 130 SNEQ 133


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L  +    +R+V        GF V       E  ++ +     + +++D  M G+   
Sbjct: 2   RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDY-DVVILDIMMPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G  V V  L         + G  AGA+ +L KPF    L   +R L + 
Sbjct: 61  TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118


>gi|281177839|dbj|BAI54169.1| two-component response regulator [Escherichia coli SE15]
 gi|315299204|gb|EFU58458.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 16-3]
 gi|323976334|gb|EGB71424.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|260599905|ref|YP_003212476.1| DNA-binding transcriptional regulator CpxR [Cronobacter turicensis
           z3032]
 gi|260219082|emb|CBA34437.1| Transcriptional regulatory protein cpxR [Cronobacter turicensis
           z3032]
          Length = 232

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + + L +  GF V  A    +A +  +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKELRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SHWSEQQQ 125


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +   +    G+ +    G+ V  A    EA +F   E   + +++D  +  +   
Sbjct: 662 RILIAEDDPVSLLSGKRMLEKSGYSVTAAKDGLEALQFL-TEQDFDLILMDVQLPTMDGV 720

Query: 63  --IAHVRQMPLGTD---VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R+   G D   + +  +              AG N ++ KP   ETL+  +  +
Sbjct: 721 DATRAIREGRAGEDKASIPIIAMTAYAMTGDKEKFLEAGMNDYISKPVEMETLKEVIERV 780

Query: 118 PQM 120
            + 
Sbjct: 781 MEK 783


>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 904

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-----EKELLPNYLVIDESMEG 58
           +L+V+   + R   + +    GF V  A +  EA +F      + +   + +++D  M  
Sbjct: 769 VLVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLAGQTPQAQPSVDLILMDIQMPV 828

Query: 59  VLEF--IAHVRQMPLG---TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +        +R+   G       +  L             +AG +  L KP     +  A
Sbjct: 829 MDGLEATRRIRENADGRFDPLTPIIALTAYAMAGDRERFLQAGLDDHLAKPVKVAEMLDA 888

Query: 114 MRELPQMQKSKDENQ 128
           M+     +      +
Sbjct: 889 MKRALDRRAEAARKK 903


>gi|218130934|ref|ZP_03459738.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697]
 gi|217987278|gb|EEC53609.1| hypothetical protein BACEGG_02536 [Bacteroides eggerthii DSM 20697]
          Length = 390

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD       + + L  +  F +  A +  +A E  +KE  P+ +++D  M      
Sbjct: 26  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEH-PDLVLLDVMMPDLSGF 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 85  EVAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 144

Query: 121 QKSKD 125
             +K 
Sbjct: 145 VAAKR 149


>gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 240

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL------------PNYL 50
            +LLV+    +      + N  G+ V  A+    A E                    + L
Sbjct: 2   RILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDLL 61

Query: 51  VIDESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
           ++D  +     LE    VR         +  L  +   ++ + G  AGA+ +L+KPF   
Sbjct: 62  ILDWILPRLSGLEICQWVRSQR--QATPILMLTAKDTLDERVQGLDAGADDYLVKPFELR 119

Query: 109 TLRFAMRELPQMQKSKDE 126
            L   +R L +   + DE
Sbjct: 120 ELLARVRALLRRTAAIDE 137


>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
 gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|167968526|ref|ZP_02550803.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           H37Ra]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + +  R      G+ V  A++   A      E  P+ +++D  +  + 
Sbjct: 1   MTLVLVIDDEPQILRALRINLTVRGYQVITASTGAGAL-RAAAEHPPDLVILDLGLPDMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +  +       V  L    D    +    AGA+ ++ KPF  +     +R   + 
Sbjct: 60  G-IDVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRR 118

Query: 121 QKSKDENQF 129
             +  E + 
Sbjct: 119 NTAAAELEQ 127


>gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
 gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A+S  EA    +     +  ++D S+    
Sbjct: 1   MKRIFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGN-RFDLALVDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++Q     ++ V +L    D   ++ G   GA+ +++KPF    L   +R   
Sbjct: 60  GFTVCTEIKQ---AQNIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|158522749|ref|YP_001530619.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Desulfococcus oleovorans Hxd3]
 gi|158511575|gb|ABW68542.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [Desulfococcus oleovorans Hxd3]
          Length = 451

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    + +    L +D GF +  A++  EA +  E    P+ +++D  M G+   
Sbjct: 4   SVLIVDDEPSILQSLGGLLSDEGFEILTASNGYEALKLIETAS-PDIVLLDIWMPGIDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                       + V  +      E  +   + GA  F+ KP + + +  A+      ++
Sbjct: 63  ETLKEIKAASPHIPVVIITGHGTIETAVNATKIGAFDFIEKPLSIDKVIVAIHNALNFRR 122

Query: 123 SKDENQ 128
            ++EN+
Sbjct: 123 LEEENR 128


>gi|221068464|ref|ZP_03544569.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713487|gb|EED68855.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LLLV+    +R   +      G  V  A     A    +    P+ +V+D S+ G+    
Sbjct: 7   LLLVEDDSAMRTTLQRTLMRRGLNVDVAADGPSALAHWQT-REPDAVVLDLSLPGLDGLQ 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              R   LG    V  L         + G  AGA+ +L KPF+ + L   +R L +  +
Sbjct: 66  VLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124


>gi|330810585|ref|YP_004355047.1| Response regulator, NarL family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378693|gb|AEA70043.1| putative Response regulator, NarL family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 230

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ND G+MV  A     A    E+   P+ +++D  M G+  F 
Sbjct: 13  VLIVDDTPDNLAMLSDALNDAGYMVLVALDGLSALNRIER-RRPDLILLDAMMPGLDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++ P   D+ V ++    +   ++ G   G + ++ KP   + +   +    +  
Sbjct: 72  TCRRIKEHPANADIPVLFMTALTESRHVVQGFEVGGSDYVTKPIQTDEVLARVAAHLRTS 131

Query: 122 K 122
           +
Sbjct: 132 R 132


>gi|325263000|ref|ZP_08129736.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
 gi|324032094|gb|EGB93373.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
          Length = 240

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    V+ +         +    A +  +A         P+ +++D  +  +   I
Sbjct: 9   ILVVEDDMPVKNLITTTLESQDYKYETAATGNQAV-MAAASGNPDIILMDLGLPDMDG-I 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             +R++   +   V  +    D    +    AGA+ +L KPF+ E L   +R   +  +
Sbjct: 67  EVIRKIRTWSVAPVIVISARSDDRDKVEALDAGADDYLTKPFSVEELLARLRSTLRRIQ 125


>gi|320334816|ref|YP_004171527.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
 gi|319756105|gb|ADV67862.1| GAF sensor hybrid histidine kinase [Deinococcus maricopensis DSM
            21211]
          Length = 1838

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              +L+VD           +       VF A +  +A    E     + +++D  M     
Sbjct: 1718 KRVLVVDDDIRNIFALTAVLERHHMTVFTAENGRDAINMLESTPDIDVILMDVMMPELDG 1777

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             E    +RQ     ++ +  L  +           +GA+ ++ KP + E L   +R    
Sbjct: 1778 YETTRLIRQNRKFKNLPIISLTAKAMPGDREKSIASGASDYISKPVHSEKLLSLLRVWLY 1837

Query: 120  M 120
             
Sbjct: 1838 R 1838



 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL+V+     R+    L  +        +S  EA          + +V+D  +  +  
Sbjct: 1572 KNLLVVEDDLTQRENIVDLIGNGDVKTTAVSSGAEALGALAT-TAFDCIVLDLKLPDMSG 1630

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118
            F  I  +++ P    + +     +    +     R  A S +LK   + E L   +    
Sbjct: 1631 FDLITTLQKNPAFRAIPIIVYTAQDLTRQQETQLRKAAKSIILKDVRSPERLLDEVTLFL 1690

Query: 119  QMQKS---KDENQFLD 131
               ++   + + Q L+
Sbjct: 1691 HRVEANLPEAKRQILE 1706



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+V+       +   L ++ GFM   A+   +A    +    P+ + +D S+     
Sbjct: 1450 RTVLIVEDDATFAGILLDLAHERGFMALIASRGEQAITLAQT-YRPSAITLDLSLPDTSG 1508

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               + H++  P+   + V+ +      E  + G + GA   + K  +R  L  A   L
Sbjct: 1509 WAVLDHLKHDPVTRHIPVHIISG---EEATLLGRKLGALDHVTKSGDRAALHQAFENL 1563


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|326790349|ref|YP_004308170.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541113|gb|ADZ82972.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    + +V   L    G+ V  + +  EA ++         +++D  M  +   
Sbjct: 5   NILVVDDDLQIMEVLCKLLELEGYKVHSSFNGFEAIDYI-NNNSIQLVILDVMMPHLNGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      +V +  L  + +    + G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  TALLKIREKH-NVPIIMLSAKTEETDKVCGLSLGADDYIEKPFNTAELLARVKAQLRR 120


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +         F V       E       E   + +++D  +     +
Sbjct: 4   RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGW 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G +  V  L    D E  + G   GA+ +L KPF+   L   +R L + + 
Sbjct: 63  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122

Query: 123 SKDENQF 129
                + 
Sbjct: 123 ESKSTKL 129


>gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+    V ++      + G+ V  A    +A E    + + + +++D  +  + 
Sbjct: 1   MNEILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAV-DLVILDILLPQMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R     TD+ V  L      E ++ G   GA+ ++ KPF    L+  +R L 
Sbjct: 60  GLDVCKAIR-DSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLL 118

Query: 119 QMQ 121
           + +
Sbjct: 119 RRK 121


>gi|225568924|ref|ZP_03777949.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
           15053]
 gi|225162423|gb|EEG75042.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
           15053]
          Length = 217

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    +  + +   +D G++ F A    +A +  E++   + +++D  +    
Sbjct: 1   MNKILIVEDEVPISNLIKESLSDAGYLCFCAFDGIQAADMVEQKRY-DLVLLDIMLPEIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E + ++R +     + V +L    D    + G ++GA  ++ KPF    L   +  + 
Sbjct: 60  GYELLEYIRPL----GIPVIFLTARSDVRDKVKGLKSGAEDYITKPFEIAELLARVETVL 115

Query: 119 QMQKSKDE 126
           +       
Sbjct: 116 RRYGKTQR 123


>gi|154495137|ref|ZP_02034142.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC
           43184]
 gi|154085687|gb|EDN84732.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC
           43184]
          Length = 230

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLV+    +  + +    +  F V  A +  +  +   K   P+ ++ D  M  +  
Sbjct: 5   KSILLVEDEASLSMIIKDALEEEDFQVITAGNGLQGIDRFYK-YAPDLIIADVMMPEIDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R      +V V +L      + ++ G   GAN ++ KPF+   L    + L    
Sbjct: 64  FEMIRRIRKENKEVPVLFLSARSSTDDIVFGFELGANDYVRKPFSLRELVVRAKALLIKY 123

Query: 122 KSKD 125
           K ++
Sbjct: 124 KQEE 127


>gi|78185337|ref|YP_377772.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78169631|gb|ABB26728.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 244

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +  + R   +  G+ V  A          +    P+ +++D ++     +
Sbjct: 10  RVLVVDDEQKLTDLLRLELDVEGYDVQVAGDGASGLIQSQTNPTPDLIILDWNLPDFSGI 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R    G    +  L    +    +    AG + +L+KPF+ + L   +R + + 
Sbjct: 70  DICQRIRAH--GVTTPILMLTGHDEVTDRVKALDAGVDDYLIKPFSIDELMARLRAMHRR 127


>gi|301161481|emb|CBW21021.1| Putative two-component system sensor histidine kinase/response
            regulator fusion protein [Bacteroides fragilis 638R]
          Length = 1345

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 1    MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
            M +  +L+V+ +  +      L +D  + +++A++  E  +   KE+LP+ ++ D  M  
Sbjct: 1088 MTTLSVLVVEDNEDINNYITSLLDDK-YRIYQASNGEEGIKIA-KEILPSLIISDIMMPI 1145

Query: 58   -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                EF   +R       + + +L  + +   +I     G + +L KPFN E L+  +  
Sbjct: 1146 KDGFEFSQEIRSNLSTAHIPIIFLTAKAEDIDIIHATHIGIDDYLTKPFNSEILKAKVDN 1205

Query: 117  LPQMQKSKDE 126
            L   +K   +
Sbjct: 1206 LISQRKQLKK 1215


>gi|294675361|ref|YP_003575977.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
 gi|294472978|gb|ADE82367.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
          Length = 1334

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++ +    +R       +   + +   T+  EA     +   P+ ++ D  M  +   
Sbjct: 1082 TLVIAEDDEEIRNYLESELSK-DYDIHACTNGREALGEVIRTK-PDLVLSDIMMPEMDGN 1139

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++  P    + V  L  +   E  +     GA+++++KPFN E LR  +  L   
Sbjct: 1140 TLCTRIKTNPNTNSIPVVLLTAKNRDEDKLESLETGADAYIVKPFNMEILRRTIMNLINK 1199

Query: 121  QKSKD 125
             +   
Sbjct: 1200 HRLLR 1204


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    R      GF V  A +  +     ++    + +V+D  M G+  +
Sbjct: 2   RILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRY-DAIVLDIMMPGMNGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         +  L  +      +     GA+ FL KPF+   L   +R L +   
Sbjct: 61  TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR-G 119

Query: 123 SKDENQFLDA 132
           S++    L+A
Sbjct: 120 SRERPVVLEA 129


>gi|253564225|ref|ZP_04841682.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_2_5]
 gi|251948001|gb|EES88283.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_2_5]
          Length = 1347

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 1    MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME- 57
            M +  +L+V+ +  +      L +D  + +++A++  E  +   KE+LP+ ++ D  M  
Sbjct: 1090 MTTLSVLVVEDNEDINNYITSLLDDK-YRIYQASNGEEGIKIA-KEILPSLIISDIMMPI 1147

Query: 58   -GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                EF   +R       + + +L  + +   +I     G + +L KPFN E L+  +  
Sbjct: 1148 KDGFEFSQEIRSNLSTAHIPIIFLTAKAEDIDIIHATHIGIDDYLTKPFNSEILKAKVDN 1207

Query: 117  LPQMQKSKDE 126
            L   +K   +
Sbjct: 1208 LISQRKQLKK 1217


>gi|238757995|ref|ZP_04619176.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           aldovae ATCC 35236]
 gi|238703749|gb|EEP96285.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           aldovae ATCC 35236]
          Length = 229

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R+  R      G+ VFE+ ++            P+ +++D  +     
Sbjct: 6   TNILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGT-RKPDLIILDLGLPDGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +++ +   + + +  L      E  +A   AGA+ +L KPF    L   +R   +  
Sbjct: 65  LT-YIQDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH 123


>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 268

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    + +       + GF V   +   EA          +  V+D  + G   +
Sbjct: 47  RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPY-DAAVLDIMLPGPDGI 105

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R    G  + +  L    +    I G  +GA+ +L KPF+ + L   +R L + 
Sbjct: 106 SVLRSLR--ERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRR 163


>gi|166368457|ref|YP_001660730.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|166090830|dbj|BAG05538.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDE 54
             LLL+D    +  + +      G+ V  A +  EA E  E+         +P+ ++ D 
Sbjct: 9   KQLLLIDDDPNLILLVKDYLEFRGYRVTTAENGPEALEILERGANTAKAAEIPDMIICDL 68

Query: 55  SMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            M  +    F+  +RQ    + + V +L  +   +  I G   GA+ +++KPF  E L  
Sbjct: 69  IMPEMDGHAFLEKIRQDSRFSCIPVIFLSPKGQSQDKITGLITGADVYMVKPFEPEELVA 128

Query: 113 AMRELPQM 120
            +    + 
Sbjct: 129 RVESSLKQ 136


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +  +++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|146306940|ref|YP_001187405.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145575141|gb|ABP84673.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 787

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  A    EA E  E+E + + +++D +M  +  +
Sbjct: 665 RVLLVEDNPVNQMVAKGMLAKLGCQVLVAGHGGEALEALEREPV-DLVLMDCNMPVMDGY 723

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R      ++ +  L      ++      AG N +L KPF RE L   +    
Sbjct: 724 EASRRIRANGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDSWL 781


>gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family
           protein [Psychroflexus torquis ATCC 700755]
 gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family
           protein [Psychroflexus torquis ATCC 700755]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+ +    + K+ +    + G+      +  E  +   K    + +++D  M     +
Sbjct: 7   TILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLV-KHNSISLILLDWMMPKLKGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R         + +L  +   E  I G ++GAN ++ KPFN E L   +    ++
Sbjct: 66  DVCKQLR--SEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARIETHLRL 123

Query: 121 QKSKDE 126
               DE
Sbjct: 124 YYKIDE 129


>gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLL++    +R          G  V  A S  +      KE  P+ +V+D  + G+  F 
Sbjct: 7   LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLF-KEQRPDLIVLDVMLPGIDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + +  
Sbjct: 66  VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRG 122

Query: 122 KSKDEN 127
           + ++ +
Sbjct: 123 ERENSD 128


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    + +V +      G+ V    +  E       E   + +++D  + G+    
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAA-AEGRYSLVLLDVMLPGLSGLE 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R         V  L         + G   GAN ++ KPF  E L   +R   +   +
Sbjct: 65  VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNGT 124

Query: 124 KDEN 127
           K E+
Sbjct: 125 KTED 128


>gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
 gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
          Length = 238

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    +RK+        G++V EA++  +  E  +     + +++D  +  +   
Sbjct: 4   RILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDY-SCVLLDVQLPMLNGK 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R+        V  +  + D +  + G   GA+ +++KPF+   L   +  + Q 
Sbjct: 63  SILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQR 119

Query: 121 QK 122
            K
Sbjct: 120 TK 121


>gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 257

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  +        G+ V       EA E    E   + +V+D ++ G+   
Sbjct: 33  RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENY-DLIVLDLNLPGMDGM 91

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                      +  V  L         + G  AGAN ++ KPF+ + L   +R L + +
Sbjct: 92  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 150


>gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 241

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+V+    + ++ R      GF +  A +   A +   + L P+ +++D  + G    
Sbjct: 7   TLLMVEDDPEISRLVRDFMRREGFEIEVAENAA-AMDAVLRRLRPDLIILDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ     D+ +  L  + D    + G   GA+ +++KPF    L   +R L + 
Sbjct: 66  SICRRLRQSD---DIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRR 122

Query: 121 QKSKDENQ 128
            ++    +
Sbjct: 123 AQASPRRE 130


>gi|15599296|ref|NP_252790.1| BfmR [Pseudomonas aeruginosa PAO1]
 gi|107103618|ref|ZP_01367536.1| hypothetical protein PaerPA_01004688 [Pseudomonas aeruginosa PACS2]
 gi|254236989|ref|ZP_04930312.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719]
 gi|254242786|ref|ZP_04936108.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192]
 gi|9950302|gb|AAG07488.1|AE004826_6 BfmR [Pseudomonas aeruginosa PAO1]
 gi|126168920|gb|EAZ54431.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719]
 gi|126196164|gb|EAZ60227.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192]
          Length = 246

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +       V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 7/125 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +  +      +  + VF+  +  EA   C +    +  ++D  +  +
Sbjct: 1   MQEKILVVDDEQEISDLLELYLQNENYSVFKFYTAKEAL-ACIETTEIDIAILDIMLPDM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R         +  L  +      I G   GA+ ++ KPF    +   ++  
Sbjct: 60  SGFTLCQKIRVNHAY---PIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQ 116

Query: 118 PQMQK 122
            +  K
Sbjct: 117 LRRYK 121


>gi|300697830|ref|YP_003748491.1| OmpR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074554|emb|CBJ54105.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
           CFBP2957]
          Length = 245

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R   +  GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLSQQGFAVSVMHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         D+ V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDMPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122

Query: 122 KS 123
           ++
Sbjct: 123 QA 124


>gi|293370753|ref|ZP_06617300.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298481267|ref|ZP_06999460.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
 gi|292634186|gb|EFF52728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298272471|gb|EFI14039.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. D22]
          Length = 1476

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1336 RKLFRERIRQQMENQ 1350


>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
 gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +  +        GF            +    +   + +++D  +  +  F
Sbjct: 4   NILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQP-FDAIILDVMLPKLNGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +    +  V  L    D    I G   GA+ +L KP N   L   +R + +  +
Sbjct: 63  -EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQ 121


>gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1344

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL+V+ +  +R+   +  +   F + EA +  +A +   KE   + +V D  M  +   
Sbjct: 1098 TLLVVEDNKELRQYLVNGLSGL-FNMLEAENGQKALDIL-KEKEVDLIVTDVMMPVMDGA 1155

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+Q      + +Y L  + D +  + G + GA+ ++ KPF+   L+  +  + + 
Sbjct: 1156 KLCKLVKQNLRTCHIPIYMLSAKADIKYQLEGLQVGADDYIAKPFSMAILKAKIMNMLRT 1215

Query: 121  QK 122
            + 
Sbjct: 1216 RH 1217


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    +  + +    D  + +    +  EA +  + E   + +++D  M  V  
Sbjct: 19  RRILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFD-ESKFDVVILDVMMPYVDG 77

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F A  R     +DV +  L      + ++ G   GA+ ++ KPF    L   +  + +  
Sbjct: 78  FEACQRIRER-SDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRV 136

Query: 122 K 122
           +
Sbjct: 137 E 137


>gi|157155566|ref|YP_001461856.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           E24377A]
 gi|191167185|ref|ZP_03029004.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli B7A]
 gi|193065513|ref|ZP_03046581.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli E22]
 gi|193070665|ref|ZP_03051602.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli E110019]
 gi|194429076|ref|ZP_03061607.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli B171]
 gi|209917945|ref|YP_002292029.1| DNA-binding transcriptional activator KdpE [Escherichia coli SE11]
 gi|218553225|ref|YP_002386138.1| DNA-binding transcriptional activator KdpE [Escherichia coli IAI1]
 gi|256020632|ref|ZP_05434497.1| DNA-binding transcriptional activator KdpE [Shigella sp. D9]
 gi|260842907|ref|YP_003220685.1| DNA-binding response regulator KdpE in two-component regulatory
           system with KdpD [Escherichia coli O103:H2 str. 12009]
 gi|260853932|ref|YP_003227823.1| DNA-binding response regulator KdpE in two-component regulatory
           system with KdpD [Escherichia coli O26:H11 str. 11368]
 gi|260866828|ref|YP_003233230.1| DNA-binding response regulator KdpE in two-component regulatory
           system with KdpD [Escherichia coli O111:H- str. 11128]
 gi|293418793|ref|ZP_06661228.1| DNA-binding transcriptional activator KdpE [Escherichia coli B088]
 gi|300817790|ref|ZP_07098004.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 107-1]
 gi|300824873|ref|ZP_07104975.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 119-7]
 gi|300907869|ref|ZP_07125482.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 84-1]
 gi|300927203|ref|ZP_07142938.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 182-1]
 gi|301302170|ref|ZP_07208303.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 124-1]
 gi|301329222|ref|ZP_07222208.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 78-1]
 gi|307312601|ref|ZP_07592233.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309795444|ref|ZP_07689861.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 145-7]
 gi|331667042|ref|ZP_08367916.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli TA271]
 gi|331676348|ref|ZP_08377060.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli H591]
 gi|332281827|ref|ZP_08394240.1| KDP operon transcriptional regulatory protein KdpE [Shigella sp.
           D9]
 gi|157077596|gb|ABV17304.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli E24377A]
 gi|190902733|gb|EDV62463.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli B7A]
 gi|192926802|gb|EDV81428.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli E22]
 gi|192956053|gb|EDV86519.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli E110019]
 gi|194412907|gb|EDX29198.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli B171]
 gi|209911204|dbj|BAG76278.1| two-component response regulator [Escherichia coli SE11]
 gi|218359993|emb|CAQ97538.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli IAI1]
 gi|257752581|dbj|BAI24083.1| DNA-binding response regulator KdpE in two-component regulatory
           system with KdpD [Escherichia coli O26:H11 str. 11368]
 gi|257758054|dbj|BAI29551.1| DNA-binding response regulator KdpE in two-component regulatory
           system with KdpD [Escherichia coli O103:H2 str. 12009]
 gi|257763184|dbj|BAI34679.1| DNA-binding response regulator KdpE in two-component regulatory
           system with KdpD [Escherichia coli O111:H- str. 11128]
 gi|291325321|gb|EFE64736.1| DNA-binding transcriptional activator KdpE [Escherichia coli B088]
 gi|300400433|gb|EFJ83971.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 84-1]
 gi|300416820|gb|EFK00131.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 182-1]
 gi|300522647|gb|EFK43716.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 119-7]
 gi|300529487|gb|EFK50549.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 107-1]
 gi|300842722|gb|EFK70482.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 124-1]
 gi|300844459|gb|EFK72219.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 78-1]
 gi|306907303|gb|EFN37808.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308120819|gb|EFO58081.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 145-7]
 gi|315059937|gb|ADT74264.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli W]
 gi|315255007|gb|EFU34975.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 85-1]
 gi|320198187|gb|EFW72791.1| DNA-binding response regulator KdpE [Escherichia coli EC4100B]
 gi|323153585|gb|EFZ39833.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli EPECa14]
 gi|323158861|gb|EFZ44872.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli E128010]
 gi|323179836|gb|EFZ65393.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli 1180]
 gi|323379501|gb|ADX51769.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323945072|gb|EGB41135.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|324016054|gb|EGB85273.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 117-3]
 gi|324116632|gb|EGC10548.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331066266|gb|EGI38150.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli TA271]
 gi|331076406|gb|EGI47688.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli H591]
 gi|332104179|gb|EGJ07525.1| KDP operon transcriptional regulatory protein KdpE [Shigella sp.
           D9]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|329889207|ref|ZP_08267550.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328844508|gb|EGF94072.1| diguanylate cyclase GGDEF domain protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 453

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V        A      E  P+ +++D  M G+  F
Sbjct: 4   RILVVDDVEANVRLLEAKLTLEYYDVLTCHDGATAIALAGAE-QPDLILLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         I G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  ETCRRIKAAADTRHIPVVLVTALDGRHDRIKGLEAGADDFLSKPLDDVILMARVRSLTRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +  + 
Sbjct: 123 KMVMDELREREE 134



 Score = 76.4 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD + +  +V     +          S     E        + ++++ + E     
Sbjct: 155 RVLIVDDNTLQAQVMAQELSRE-HRPLIEPSAEAGLETAR--GPVDLVIVNITSERFDGL 211

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             IA +R       + +  ++   D  +++     GA+  L++P + E L   +R   + 
Sbjct: 212 RLIAQLRSKEPTRRLPILAVVDTQDRPRLLKALELGAHDLLIRPIDPEELAARVRTQVRR 271

Query: 121 QK 122
           ++
Sbjct: 272 KR 273


>gi|312897331|ref|ZP_07756757.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621549|gb|EFQ05083.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    +      + N  G+     +   +A E  E+    + +V D  M G    
Sbjct: 2   RLLLAEDEKELSTAVATILNASGYETDIVSDGVQAVEAAERNSY-DCMVFDIMMPGKDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A       G    V  L  + + +  I G  AGA+ +L KPF  + L   +R + + 
Sbjct: 61  TALSEIREKGDVTPVIMLTAKSEVDDRITGLDAGADDYLTKPFAVKELLARIRSVTRR 118


>gi|309778833|ref|ZP_07673604.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA]
 gi|308922357|gb|EFP67983.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R + R      GF V       +      +   P  +V+D  M  V  
Sbjct: 4   TKILVVDDDVELRDLLREYLTQQGFAVSVLHDG-DGLAARLERERPALVVLDLMMPKVDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A         DV V  L    D    I G   GA+ +L KPF+   L   +  + + +
Sbjct: 63  LSALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122


>gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 243

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+  + +  +  H     G  V  A +  +A E    +   + +++D  M     
Sbjct: 13  KLILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQP-IDLVILDIKMPELSG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +RQ        V  L         +   R GA+ F++KPFN   +   ++ + +
Sbjct: 72  WEVLNKIRQKAA---TPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLR 128

Query: 120 MQKSKDE 126
             +   +
Sbjct: 129 RTQQNQQ 135


>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
          Length = 223

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +       + G++V +A    E   +       + +++D  +  +   
Sbjct: 2   RILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEG-HYLGDAEPYDAIILDIGLPEMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  R    G  + V  L     +   +AG  AGA+ ++ KPF+ + +   +R L + 
Sbjct: 61  TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRR 118


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+V+    +      L    GF     T    A    ++    + +++D  + G+  
Sbjct: 5   TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DIVLLDLMLPGMSG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V V  +         + G   GA+ ++ KP++   L   +R + +
Sbjct: 64  TDVCKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
 gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 235

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ + +  +R     +    G+    A +  +A     ++  P+++++D  M  + 
Sbjct: 1   MK-ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQ-QPDFIILDIMMPELD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        + +L  + +    + G   GA+ ++ KPF    +R  ++ + 
Sbjct: 59  SYKVCREIRKHDW--QTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIV 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|330810400|ref|YP_004354862.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378508|gb|AEA69858.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 236

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLLVD    V  + R      G+ V  A     A     +  +P+ +++D  + G  
Sbjct: 1   MSHLLLVDDDLEVLALLRKFLEQHGYSVDVAADG-TALWQAVERRVPDLIILDVMLPGDN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V +  L    +    + G   GA+ +L KPF+   L   +R + 
Sbjct: 60  GLVLCQRLRAE---HTVGIIMLTAMGELSDRVVGLELGADDYLTKPFDARELLARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|307294458|ref|ZP_07574300.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306878932|gb|EFN10150.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 236

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           +++LV+    +R +      + G+ V  A+S  E     +   + + +V+D  + G   +
Sbjct: 5   TIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPV-DLVVLDVMLPGTNGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+    +DV + ++  +      I G   GA+ +L KPF    L   +R + + 
Sbjct: 64  DLCRQIRRK---SDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120

Query: 121 QKSKD 125
              + 
Sbjct: 121 VGVER 125


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+    +         +  + V  A       E+ E     + +++D  +  + 
Sbjct: 1   MK-VLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEA-FTYDLILLDVVLPKLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         +  L         I G  AGA+ +++KPF+   L   +R + 
Sbjct: 59  GISLCRQLRSRHTT--TPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
          Length = 239

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  +        G+ V       EA E    E   + +V+D ++ G+   
Sbjct: 15  RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENY-DLIVLDLNLPGMDGM 73

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                      +  V  L         + G  AGAN ++ KPF+ + L   +R L + +
Sbjct: 74  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 132


>gi|148977382|ref|ZP_01813982.1| putaive two-component response regulator [Vibrionales bacterium
           SWAT-3]
 gi|145963334|gb|EDK28599.1| putaive two-component response regulator [Vibrionales bacterium
           SWAT-3]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  V    F   G  +  A +     +        + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGVLFDYFECIGMELDYADNGELGLQLAMDNS-FDIIILDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G    +  L      E M+ G   GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTVCNKLRDQGNATPILMLTALDSREDMLKGFDHGADDYLTKPFDLDILEARMNALVRR 119

Query: 121 QKSK 124
            + K
Sbjct: 120 YRGK 123


>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 243

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    VR          GF V  A +  EA      E   + LV+D  M  +  
Sbjct: 18  RTVLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESH-DALVLDVQMPELDG 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    LG D+ +  L         IAG  AGA+ +L KPF+   L   +  L +  
Sbjct: 77  VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 136

Query: 122 KSKDE 126
              D 
Sbjct: 137 HHSDR 141


>gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G++V    +  +A  F         +++D  + G+   
Sbjct: 2   RVLVVEDDQRIAADVSRTLEASGYVVETVANGEDAW-FLGDTEDYGAVILDLGLPGMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V  L     + + + G  AGA+ +L KPF  E L   +R + + 
Sbjct: 61  AVLKRWRANGRHMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G+MV  A    +      +E   + +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +       V  L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 117

Query: 121 Q 121
            
Sbjct: 118 H 118


>gi|121601666|ref|YP_989580.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
           KC583]
 gi|12830428|emb|CAC29081.1| putative regulatory protein [Bartonella bacilliformis]
 gi|120613843|gb|ABM44444.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
           KC583]
          Length = 240

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T+   A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTNGVSALKSLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRF 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 NARNQ 131


>gi|319943631|ref|ZP_08017912.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
 gi|319742864|gb|EFV95270.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
          Length = 237

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             L++VD    +R +      +  F V  A           +    + +++D+ + G   
Sbjct: 6   RKLVVVDDDAKLRDLLNRYLTEQQFEVTLAADSAS-LNRLMQRESFDLIILDQMLPGEDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R         +  L  + D    I G   GA+ ++ KPFN   L   +  + + Q
Sbjct: 65  LSIIRRLRAANDRTPIIMLTAKGDDVDRIIGLEMGADDYMQKPFNPRELVARVHAVLRRQ 124


>gi|317503555|ref|ZP_07961577.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315665297|gb|EFV04942.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 1372

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+VD S         + + + + V  A    EA E  + +  P+ ++ D  M  +    
Sbjct: 1127 LLIVDDSEDYLAFMAEVLSQY-YHVRVAHHGKEALEDIKVQ-RPDVILSDVMMPEMDGNM 1184

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++      D+    L   V     + G   GA+ ++ KPF+ E L   +  L +
Sbjct: 1185 LCKTLKGDRNTCDIPFIMLTARVADAHKLEGLALGADDYITKPFSIELLILRINNLIK 1242


>gi|315918654|ref|ZP_07914894.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313692529|gb|EFS29364.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1476

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1336 RKLFRERIRQQMENQ 1350


>gi|299145557|ref|ZP_07038625.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298516048|gb|EFI39929.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 1476

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1218 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1275

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1276 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 1335

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1336 RKLFRERIRQQMENQ 1350


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL + + + R +   L    G  V  A +  E     E+E   + +++D  M  +   
Sbjct: 379 RILLAEDNPVNRILAVRLLEKAGHTVAVAGTGREVLVTLERE-QFDLVMMDVQMPEMDGI 437

Query: 63  --IAHVRQMPLGT--DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              A +R+   G+   + +  L              AG + +L KP   + L  A+  L 
Sbjct: 438 SATAAIRERERGSGAHLPILALTAHAMNGDRERCLAAGMDDYLSKPIQAKALYEAIARLC 497

Query: 119 QMQKSKDENQFL 130
                 D N+ L
Sbjct: 498 ARASGLDHNESL 509


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+       + R    + GF V       +A      E+  + +V+D  +  +  F
Sbjct: 2   RVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQA-TEITYDVIVLDLMLPSLDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L         + G   GA+ +L KPF+ + L   +R L + 
Sbjct: 61  EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR 118


>gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4]
          Length = 229

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D       +      D GF V       +   F +     + +V+D  M  + 
Sbjct: 1   MTRVLLIDDDLEFTGLLCEYLTDEGFDVLSTDDGAKGLAFVDSGAT-DIIVLDVMMPIMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +   +++ +  L    D +  I G   GA+ ++ KP +   L   +R + + 
Sbjct: 60  GV-DVLQNIRKSSEIPIVMLTARGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILRR 118


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+  + + ++         + V  A    EA    +KE   + +++D  +     
Sbjct: 3   KRILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEK-FDLILLDLMLPKVNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E + H+R+    + V V  +  +        G   GA+ ++ KPF+   L   ++   +
Sbjct: 62  MELLKHIRE---TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIR 118

Query: 120 MQKSKDENQ 128
                 E +
Sbjct: 119 RATVYAETE 127


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+    V    +      G+ V  A +  E             +++D  + G+  L+
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEA-ALVILDVMLPGMTGLD 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G  V V  L      E  +AG + GA+ +L KPF  E L   +  L +  
Sbjct: 65  LCQSLRA--EGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRG 122

Query: 122 KSKD 125
           + + 
Sbjct: 123 REQR 126


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LLV+    +R+         GF V  A    E   +  +E+  +  +ID  +  +  +
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R    G    V  L     ++  + G + GA+ +L+KPF+ E L   +  L + 
Sbjct: 61  ELIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118


>gi|94264089|ref|ZP_01287888.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455505|gb|EAT05695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 493

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R       +  G  V  A +   A E  E++  P+ +V D  M  +  
Sbjct: 3   RKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQP-PDLVVTDIRMPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +       + V  +      E  +   + GA  ++LKPF  E +   +R++ + +
Sbjct: 62  IEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQR 121

Query: 122 KSKD 125
           + + 
Sbjct: 122 QGEA 125


>gi|94269909|ref|ZP_01291598.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451023|gb|EAT01990.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 493

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R       +  G  V  A +   A E  E++  P+ +V D  M  +  
Sbjct: 3   RKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQP-PDLVVTDIRMPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +       + V  +      E  +   + GA  ++LKPF  E +   +R++ + +
Sbjct: 62  IEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQR 121

Query: 122 KSKD 125
           + + 
Sbjct: 122 QGEA 125


>gi|24373973|ref|NP_718016.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24348419|gb|AAN55460.1|AE015683_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 237

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   + R     +    G  V  A +  E    C +   P+ +++D  M  + 
Sbjct: 11  MSRILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLT-CIRSFAPDIVMLDLVMPQMD 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F              +  L    + E  I     GA+ FL KPF+ + L   ++ + + 
Sbjct: 70  GFELL---QARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERR 126


>gi|93007292|ref|YP_581729.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
           cryohalolentis K5]
 gi|92394970|gb|ABE76245.1| PAS/PAC sensor hybrid histidine kinase [Psychrobacter
           cryohalolentis K5]
          Length = 974

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLEF 62
           +L+V+ S   +K+   +    G+    A    +A +  + +    + +++D  M  +   
Sbjct: 857 ILVVEDSPTNQKIACKMLAKLGYRSVVAEDGQQALDILQAQRQEIDLILMDCRMPVMDGL 916

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R    G D+ +  L      E   A  + G + FL KP N++ L+  +  L +
Sbjct: 917 QATQAIRAQ--GDDIPIVALTANNTEEDRSACLKVGMDEFLAKPINKDKLQDVLTALIK 973


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G+ V       +  E    E   + +++D  + G  
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVAL-ETNYDLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R      +  +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GLEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDENQFLDAI 133
           + ++   EN+ + ++
Sbjct: 117 RREEHI-ENKHVSSL 130


>gi|325291487|ref|YP_004277351.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325059340|gb|ADY63031.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 249

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V   T    A +       P   + D  M  + 
Sbjct: 8   MQTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARP-PQLAIFDIKMPRMD 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + +    + G + GA+ F+ KPF++  L   ++ + + 
Sbjct: 67  GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 125

Query: 121 QKSKD 125
             S++
Sbjct: 126 ASSRE 130


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V        A      E + + +V+D  +  + 
Sbjct: 1   MTCVLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDV-DLIVLDLGLPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    V  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVCRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    +R+        +G+ V  A       E   +    + L++D  +     +
Sbjct: 22  RVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGH-DLLILDVMLPHLDGI 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +   +  +        +++G  AGA+ +++KP +   L   +R L + 
Sbjct: 81  GLCRRIRES---SQAPILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRR 137


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +  +      GF      +   A E   +E   + +++D  + G+  
Sbjct: 11  TRVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQEN-FDIILLDVMLPGMDG 69

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR +   T+V +  L  +   E  + G   GA+ ++ KPF    L   ++   +
Sbjct: 70  IEICRRVRAV---TNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALR 126

Query: 120 MQKSKDEN 127
            +    E+
Sbjct: 127 RRDISTED 134


>gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 223

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +V+    +R++ R+   + G+ V E        +  EK  +P+ +++D  + G  
Sbjct: 1   MATIYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKN-IPSLILLDIMLPGED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R      DV V  +  +      + G   GA+ ++ KPF    L   ++ L 
Sbjct: 60  GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119

Query: 119 QMQKSKDENQFL 130
           +     +E+  L
Sbjct: 120 RRTSRMNEDSQL 131


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V +      G+    A +  EA E        + +++D  +  +   
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF-GNGNWDLILLDVMLPNISGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L         ++G   GA+ ++ KPF  E L   +R   ++  
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 123 SKDENQ 128
              E +
Sbjct: 123 VVKEEE 128


>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVRES-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
 gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R   + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 705

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D    VR +   L  + G+    A S        E +  P+ +++D  M G+   
Sbjct: 7   TILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQ-APDLILLDIMMPGMDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++      ++ +  L    +    ++G  AGA  +L KP +   L   +R L ++
Sbjct: 66  EVASQLKASKSTANIPIIMLSALDEHSARLSGLEAGAEEYLNKPVDSAELWLRVRNLLRL 125

Query: 121 Q 121
           +
Sbjct: 126 K 126


>gi|330820701|ref|YP_004349563.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
 gi|327372696|gb|AEA64051.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
          Length = 248

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++           V  A +  E R   E    P+ +V+D  M G     
Sbjct: 9   VLIVDDDRGIRELVGQYLEKNSIRVSLAANGREMRATLEYG-APDLIVLDVMMPGDDGLV 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    +    I G   GA+ +L KPF    L   +R + +  
Sbjct: 68  LCRELRA-GKFRSVPVVMLTARDEETDRIVGLEMGADDYLTKPFAVRELYARIRAVLRRA 126

Query: 122 KS 123
           + 
Sbjct: 127 RM 128


>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 237

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L++D    + ++        G++V       E  +         ++V+D  +     
Sbjct: 3   KRILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDY-AFVVLDVMLPTLNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +  +RQ    T V V  L    D    I G   GA+ +L KPFN   L   +R + +
Sbjct: 62  FDVLRRIRQN---TQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQR 118

Query: 120 MQKS 123
              +
Sbjct: 119 RSDA 122


>gi|326443818|ref|ZP_08218552.1| putative two-component system sensor kinase [Streptomyces
            clavuligerus ATCC 27064]
          Length = 1763

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1643 KVLIVDDDIRNVFALTSVLEQQGLTVLYAENGREGIEVLEQHDDVQVVLMDIMMPEMDGY 1702

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  + 
Sbjct: 1703 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLTVMEQWVRA 1762

Query: 121  Q 121
            +
Sbjct: 1763 R 1763


>gi|209520041|ref|ZP_03268818.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499526|gb|EDZ99604.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 246

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD   +VR +        GF           +   E+E  P+ +V+D  M       
Sbjct: 5   VLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERE-RPSVVVLDIMMPNTDGLR 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           A       G D+ V ++         I G   GA+ +L KPF+   L   ++ + + +
Sbjct: 64  ALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLVRIQTVLRRR 121


>gi|253698922|ref|YP_003020111.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251773772|gb|ACT16353.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. M21]
          Length = 456

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD  H++R          G+ V  A +  +A     +E  P+ +++D  + G+   
Sbjct: 5   KIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLA-REEQPDLVLLDYHLPGINGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R   L  D+ V  +  +   E  +   R GA  ++ KPFN + +   +R+  +  +
Sbjct: 64  EVLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVIRKALETSE 123

Query: 123 SKDENQFLDA 132
            + E   L +
Sbjct: 124 LRREVVQLRS 133


>gi|172039491|ref|YP_001805992.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700945|gb|ACB53926.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 335

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++   + +  G+    A S  +A E   K   P+ +++D  M  +    
Sbjct: 14  ILVVDDIRKNLQLLIEILDTSGYGTTFAISGKQALERA-KVTEPDLILLDLMMPEMNGLE 72

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++      + V +L    +   +I    +GA  ++ KPF    L   ++    ++
Sbjct: 73  VCKQLKKNAKTEQIPVIFLTAATETNYLIEAFESGAVDYVTKPFKTPELLARIKTHLDLK 132

Query: 122 KSKDENQ 128
           ++KDE +
Sbjct: 133 RTKDELK 139


>gi|162453117|ref|YP_001615484.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163699|emb|CAN95004.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 153

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+       +      D  F    AT+  +     ++E  P+ +++D  M  +  
Sbjct: 33  KRILVVEDEQDTAAMIARFLGDE-FDTVVATNGVDGLALAQQEPRPDLVIVDIMMPKLDG 91

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+      V + +L  + D   +IAG +AGA  ++ KPF  + L+  +R+  
Sbjct: 92  VSMTKRLREHEPTRRVPIIFLTAKSDPMDVIAGIQAGARHYITKPFVLDDLKKKVRKAV 150


>gi|119952783|ref|YP_950374.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
 gi|119951913|gb|ABM10822.1| putative two-component system response regulator [Arthrobacter
           aurescens TC1]
          Length = 259

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAH 65
           +++    +R     +F   GF V  A+S  E  E   KE  P+ + ID  +       A 
Sbjct: 9   VIEDDEDIRAAVAEIFRQSGFAVHAASSGSEGLERV-KEHNPDIVTIDIGLPDFDGLEAS 67

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125
            R++   +D +V  +    D    + G  AGA+ ++ KPF    LR  ++ + +  +S  
Sbjct: 68  -RRIRTFSDAYVIIVSGRADEADALMGFEAGADDYITKPFRPRELRARIKAMLRRPRSTH 126

Query: 126 EN 127
           +N
Sbjct: 127 QN 128


>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++         +    + G+ V  A    E      KE   + +V+D  +  +  +
Sbjct: 2   RILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGL-ILAKESEYDVIVLDVMLPSIDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++ +       V +L    D    + G   GA+ +L+KPF    L   +R L + 
Sbjct: 61  TV-LKTLRATQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARR 117


>gi|170748891|ref|YP_001755151.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655413|gb|ACB24468.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 251

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 10/133 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +  +           V  A    +  +    E   + +V+D  + G     
Sbjct: 21  ILVVEDDREISALIARYLRGNDCRVTLAGDGTD-MDRVLAEARIDLIVLDLMLPGEDGLS 79

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     + + +  L  + +    I G   GA+ +L KPFN   L   +R + +  
Sbjct: 80  LCKRLR---GTSQIPILILTAKSEDVDRILGLELGADDYLAKPFNPRELLARIRAILRRV 136

Query: 122 KSK----DENQFL 130
            ++    DE + L
Sbjct: 137 AAEAPDADERRRL 149


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  V  +    F   GF         E  +   +E   + +++D  +  + 
Sbjct: 1   MK-ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDW-DLVILDIMLPSMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L  +      + G   GA+ ++ KPF+  TL   ++ + 
Sbjct: 59  GVTICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVI 115

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 116 RRYRATGQ 123


>gi|149178311|ref|ZP_01856903.1| putative response regulator [Planctomyces maris DSM 8797]
 gi|148842837|gb|EDL57208.1| putative response regulator [Planctomyces maris DSM 8797]
          Length = 157

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +H   ++      D G+  F A    E  E    E+ P+ +++D  M      
Sbjct: 11  KILIADDNHQNCELLDAYLLDEGYETFMAYDGKETLEKV-AEIDPDLILLDIMMPKLSGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A ++Q     D+ +  +    +   +    +AG + FL KP NR  L   +R L ++
Sbjct: 70  EVCAQLKQSDETKDIPILVITALNEMGDIEKSVQAGCDDFLTKPVNRIELTTRVRSLLRV 129

Query: 121 QKSKDENQFLDA 132
           +    E   L A
Sbjct: 130 RHLTHERDRLLA 141


>gi|154250536|ref|YP_001411360.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154486|gb|ABS61703.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 257

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVL 60
           SLLLVD    +R+  R   +  G ++ EA     A E        + +++D  +  +   
Sbjct: 20  SLLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMF-SGGKFDLVILDLLLGADNGF 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +RQ           +  + +    + G   GA+ +++KP N   L   +R L + 
Sbjct: 79  DVLREIRQ---THSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRR 135


>gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 222

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R + +      G+ V EA +  E R+   KE   + +++D  +   L
Sbjct: 1   MKRILIVEDDETLRDLLKRYIKSEGYEVDEAENNFEMRKKLSKERY-DLVLLDIMLPDGL 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     L   + +  +  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  STDELPEIKVLYPKLGIIIVSAKDNDSDKIYGLEIGADDYVTKPFNPREVVARIKAFFRR 119

Query: 121 QKSKDE 126
              + E
Sbjct: 120 ISGERE 125


>gi|121998947|ref|YP_001003734.1| response regulator receiver protein [Halorhodospira halophila SL1]
 gi|121590352|gb|ABM62932.1| response regulator receiver protein [Halorhodospira halophila SL1]
          Length = 120

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++  +     G+ V EA    +A    +     + ++ D +M  + 
Sbjct: 1   MAKILAVDDSASMRQMVTYTLKQQGYEVTEAVDGTDALTKAKAGG-FDLVITDVNMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R +P      +  L  E   EK   G  AGA  +L+KPF+ + L   ++++ 
Sbjct: 60  GITLVRELRGLPAFKFTPILLLTTESAPEKKQEGKAAGATGWLVKPFDPDQLVNTIKKVV 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+   +A S  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  +  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            +++  N
Sbjct: 119 SQNEVTN 125


>gi|331090774|ref|ZP_08339621.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399882|gb|EGG79541.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+VD    +R +         +     ++  +       +  P+ L++D  +  
Sbjct: 1   MNKPLILVVDDDKAIRSLITTTLETQEYRYHAVSNGMQGILEVASQK-PDVLLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  ++++   ++V +  +    + +  I     GA+ +L KPF+ + +   +R + 
Sbjct: 60  MDG-IKVIQKVRSWSNVPIIVISSRSEDKDKIQALDLGADDYLTKPFSIDEILARIRVVL 118

Query: 119 QMQK 122
           + ++
Sbjct: 119 RRER 122


>gi|295132769|ref|YP_003583445.1| two-component system sensor histidine kinase/response
            regulator,hybrid ('one-component system') [Zunongwangia
            profunda SM-A87]
 gi|294980784|gb|ADF51249.1| two-component system sensor histidine kinase/response
            regulator,hybrid ('one-component system') [Zunongwangia
            profunda SM-A87]
          Length = 1351

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
            +LL+D +  +      +     + +  A +  E      K  +P+ +V D  M     ++
Sbjct: 1098 ILLIDDNPDIHHYLSSIL-KEKYDLLHALNGQEGINMAIKH-VPDLIVSDIMMPEKSGID 1155

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                ++     T + +  L  +   E +I G   GA+ ++ KPF+   L+  +R L   +
Sbjct: 1156 LTNTLKSKKETTHIPIILLSAKDAQESIITGYNEGADDYITKPFSTAILQARIRNLLDRK 1215

Query: 122  KSKDENQFLD 131
             S  + + L 
Sbjct: 1216 FSL-QKELLQ 1224


>gi|262166699|ref|ZP_06034436.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
 gi|262170378|ref|ZP_06038056.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|261891454|gb|EEY37440.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|262026415|gb|EEY45083.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + EA                + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAV--TDQIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|256425390|ref|YP_003126043.1| Fis family transcriptional regulator [Chitinophaga pinensis DSM
           2588]
 gi|256040298|gb|ACU63842.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [Chitinophaga pinensis DSM 2588]
          Length = 394

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L++D    +RK    + +  G+ V EA    E  +   K+   + ++ D  M  + 
Sbjct: 1   MASILIIDDEKSIRKTLSEILSYEGYKVEEAADGAEGFKLF-KDKQYDAVLCDIKMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +   + TDV +  +    + +  +   + GA  ++ KP +   L   +R     
Sbjct: 60  GLEFLEKAREINTDVPIIMVSGHGNIDTAVEAVKKGAYDYISKPPDLNRLLITLRNAMDK 119

Query: 121 QKSKDENQFL 130
                E + L
Sbjct: 120 TNLVTETKTL 129


>gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+V+    +         + G+ VF+  +  E  E   KE   +  ++D  M  
Sbjct: 1   MKSYNVLVVEDEKEIADAIEIYLKNQGYNVFKGYNGIEGLEIISKEE-IHLAIVDIMMPR 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++      D  V  L  + +    I G   GA+ ++ KPF    L   +    
Sbjct: 60  MDGIAMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|224372199|ref|YP_002606571.1| chemotaxis response regulator [Nautilia profundicola AmH]
 gi|223588330|gb|ACM92066.1| chemotaxis response regulator [Nautilia profundicola AmH]
          Length = 125

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD S  +R++  +     G+  V +A    EA E  +       ++ D +M  +
Sbjct: 1   MK-ILVVDDSSTMRRIIVNTLARLGYKDVVQAADGVEAWEVMQANPDIGVVITDWNMPNM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE +  +R      D+ +  +  E    ++I   +AG N++++KPF  + L+  ++ +
Sbjct: 60  NGLELVKKIRAEEKYKDIPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLQAV 119

Query: 118 P 118
            
Sbjct: 120 L 120


>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
 gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
          Length = 239

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    ++   R+     G+ V  A +   A E       P+ +++D  + G+ 
Sbjct: 1   MPTILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFA-RPDLVILDIMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            F     +R+    + V +  L         + G   GA+ +L KPF+   L   ++
Sbjct: 60  GFQVCRQLREQ---STVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVK 113


>gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1]
 gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+VD    VR          G+ V  A               P+ +V+D  M     
Sbjct: 19  QRILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAA-WEPDAVVLDVMMPVLDG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           L     +R M  G    +  L       + + G  AGA+ +L+KPF  + L   +R L 
Sbjct: 78  LGVCRQLRAM--GDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALL 134


>gi|261407257|ref|YP_003243498.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283720|gb|ACX65691.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +RK+    F   G+ V  A    EA      EL P+ +++D +M    
Sbjct: 1   MHKILIVDDEADLRKLLTDYFEINGYFVMTAKDSREAMRKV--ELGPDLVLLDINMPEES 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         + +L   ++    IAG RAG + ++LKPF+   L   +    
Sbjct: 59  GLEICERIR---GFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHL 115

Query: 119 QMQK 122
           + ++
Sbjct: 116 RREQ 119


>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + K+      + G+ V +A    E   +   E   + +++D  +  +  F
Sbjct: 2   KVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYEN-FDIIILDLMLPKMSGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         +  L  +   E  + G   GA+ +L KPF+   L   ++ L +  K
Sbjct: 61  YIIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSK 120

Query: 123 SKDENQFLD 131
             DE   L 
Sbjct: 121 DIDEISKLK 129


>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
 gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
          Length = 238

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +++VD    +  +      + G+ V +  +  +A E C ++   +  ++D  +  +  F 
Sbjct: 11  IMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALE-CVEQKRLDLAILDVMLPDMDGFT 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+  L     +  L  +V+    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 70  LCQKIRESHLF---PILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQLRR 125


>gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +  +      +  + +++  S  EA +  + E+  +  ++D  M  +  
Sbjct: 3   TNILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSID-EIKYDLAILDVMMPVMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+        V  L  +V+    I G   GA+ ++ KPF+   +   ++   +
Sbjct: 62  FKLCQKIREKYNF---PVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    + +  +    D G++V  A    EA  F       + +++D  +  +   
Sbjct: 2   RILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEA-HFLGDTEPYDCVILDLGLPKIDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V  L     +   ++G  AGA+ +L KPF+ E L   +R L +   
Sbjct: 61  SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 123 SKDE 126
              +
Sbjct: 121 GHAQ 124


>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
 gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  +      + GF ++++ +  +A    E E      ++D  +  +  F
Sbjct: 14  NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESE-QLELAILDVMLPDIDGF 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      +  V  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 73  TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 129


>gi|194434012|ref|ZP_03066283.1| KDP operon transcriptional regulatory protein KdpE [Shigella
           dysenteriae 1012]
 gi|194417777|gb|EDX33875.1| KDP operon transcriptional regulatory protein KdpE [Shigella
           dysenteriae 1012]
 gi|320182572|gb|EFW57462.1| DNA-binding response regulator KdpE [Shigella boydii ATCC 9905]
 gi|332096623|gb|EGJ01616.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           dysenteriae 155-74]
          Length = 225

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|197116776|ref|YP_002137203.1| response regulator [Geobacter bemidjiensis Bem]
 gi|197086136|gb|ACH37407.1| response regulator [Geobacter bemidjiensis Bem]
          Length = 204

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD +     +   +     + V  A S  EA      E  P+ +++D  M  +  
Sbjct: 4   KKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEAL-LALAENRPDLILLDVMMPEMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      D+ V ++    D      G +AGA  FL KP N   L   +    +
Sbjct: 62  LEVCRILKDDSRYRDIPVIFVTALSDEVDESRGFKAGAVDFLSKPVNPVILSHRVAVHLE 121

Query: 120 MQKSKD----ENQFLDA 132
           +Q  K+    +NQ L  
Sbjct: 122 LQSQKEALTRKNQELQE 138


>gi|110634491|ref|YP_674699.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110285475|gb|ABG63534.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 240

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R + +    + GF V  A +  EAR      L  + LV+D  M G   + 
Sbjct: 21  LLVVDDDTRIRTLLKRFLTEEGFRVTVAANAAEARRKL-AGLDFDLLVLDVMMPGEDGVG 79

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ     DV +  L    + E  + G +AGA+ +L KPF+   L   +  + + 
Sbjct: 80  LTRSLRQE---RDVPILMLTALSETESRVTGLQAGADDYLPKPFDPRELVLRVNNILRR 135


>gi|332876941|ref|ZP_08444694.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332685049|gb|EGJ57893.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 249

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +      GF V  A +  E  E  +KE   +  ++D  M     
Sbjct: 15  KRILLVEDDPNFGTVLKDYLVMSGFDVVLAKNGMEGFEKFKKET-FDMCILDVMMPYKDG 73

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F            + + +L      E +I G R+G + +L KPF+ E L   +R + Q +
Sbjct: 74  FTLAKEIREKNEKIPIIFLTARTMREDVIKGYRSGGDDYLNKPFDSEILLMKIRSMLQRK 133


>gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
 gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
          Length = 231

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLLV+    +R +         + V  A    EA EF E     + +V+D ++  + 
Sbjct: 1   MK-LLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEV-YDYDLIVLDLNLPKID 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      ++ +  L    + E +I G   GAN +L+KPF+   L   +R L + 
Sbjct: 59  GIEVLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRR 118


>gi|295101441|emb|CBK98986.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R++        G    EA S   A    E+    +  ++D  + G+ 
Sbjct: 1   MVKVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQRPGCDAAILDVMLPGMN 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+      + +  L  +   +  I G   GA+ ++ KPF+   L   +  L 
Sbjct: 61  GFSLCETIRRTD--QKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALC 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 224

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      +    V  A +  EA +  E     + +V+D  M  +   
Sbjct: 5   TILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILE-NTKVDLIVLDVMMPKMDGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++      +V +  L  ++D    I G   GA+ ++ KPFN   L   ++   +  K
Sbjct: 64  KACMKIREKL-NVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYK 122

Query: 123 SKDEN 127
             + N
Sbjct: 123 QLNNN 127


>gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +  + +      G+ +  + +  E  E  +KE  P+ +++D  +  + 
Sbjct: 1   MK-ILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEK-PDLVILDIMLPDIS 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +   +  D+ V  +  +      + G + GA+ ++ KPFN   L   ++ + + 
Sbjct: 59  GHEVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKR 118

Query: 121 QKSKDENQ 128
              KD  +
Sbjct: 119 ITKKDREE 126


>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 233

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|198284942|ref|YP_002221263.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666606|ref|YP_002427627.1| transcriptional regulator OmpR, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249463|gb|ACH85056.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518819|gb|ACK79405.1| transcriptional regulator OmpR, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 245

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R +        GF+V  A S  +     E+E     L+    M G   F
Sbjct: 6   KILLVDDDPRLRTMLVRYLEGQGFIVHAAASGVQMDRQLEREYYDLLLLD-VLMPGEDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L    D    + G   GA+ +L KPF  + L   +R + + 
Sbjct: 65  SICQRLRVQE--PHLPIIMLTARGDLADRVQGLDVGADDYLSKPFEPQELVARIRAVLRR 122

Query: 121 QK 122
            +
Sbjct: 123 SQ 124


>gi|182412958|ref|YP_001818024.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840172|gb|ACB74424.1| GAF sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1896

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  ++   V  A +  +A E  +       +++D  M  +  
Sbjct: 1776 RKILVVDDDARNIFALTTMLENYEMEVISAMNGRQAIELLQSHGEIGAVLMDIMMPEMDG 1835

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R+ P  + + +  L  +           AGA+ ++ KP N   L   +R    
Sbjct: 1836 YETMREIRKDPRFSTLPILALTAKAMKGDRDKCLAAGASDYIAKPVNTNELLSLLRVWLY 1895

Query: 120  M 120
             
Sbjct: 1896 R 1896



 Score = 80.2 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ + I R     L       +  A +  EA E      + +  V+D  +  +  
Sbjct: 1630 KRLLIVEDNAIERDSIVQLLAHDDIEIVTAGTGAEALEQLLDRPV-DCCVLDLRLPDMSG 1688

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E +  V++ P   +V V     +    +     +  A S L+K   + E L  
Sbjct: 1689 FELLDRVQREPALREVPVVVFTGKDLSTEEEHRLKTVAKSVLVKDVQSPERLFD 1742



 Score = 68.3 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 9/122 (7%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL+V+      +V   L  + GF    AT          ++  P  + +D  +  +L +
Sbjct: 1509 TLLIVEDDPHYARVLLGLARERGFKGIVATRGAA-ALALARQHQPTAITLDVLLPDMLGW 1567

Query: 63   IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMREL 117
                 ++  P    + V  + +    E+       GA ++ +KP   E L      ++  
Sbjct: 1568 TVLNNLKLDPATRHIPVQIISV---EEERSHALAHGAFAYTVKPTTTEGLQQCFDRIKRY 1624

Query: 118  PQ 119
             +
Sbjct: 1625 VE 1626


>gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 891

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD                   V  A +     +  ++    + +++D  +  +  
Sbjct: 771 KKVLIVDDDMRNIYATTIALESKQVEVLFAENGLSCLKVLKEHPDVDLILMDIMLPEMDG 830

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +RQMP    + +  L  +   +       AGA+ ++ KP   E L   +     
Sbjct: 831 YETMRALRQMPGFGTLPIIALTAKAMKDDKDKCLEAGASDYMSKPVKLEQLFARIHSWLS 890

Query: 120 M 120
            
Sbjct: 891 R 891


>gi|91772837|ref|YP_565529.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91711852|gb|ABE51779.1| Response regulator receiver domain-containing protein
           [Methanococcoides burtonii DSM 6242]
          Length = 204

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD      ++     +   + +  A+   EA E   K+  P+ +++D  M  +   
Sbjct: 7   KILVVDDEPWNLELMEAYLSG-DYEIALASDGVEALEKV-KDFDPDIILLDVRMPKMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +    + E  I G  AGA+ FL KP +   L+  +  L ++
Sbjct: 65  QTCEKLKNDERTKFIPVVLVTALSEKEDRIKGIAAGADEFLSKPVDMLELKTRVHSLLKI 124

Query: 121 QKSKDENQ 128
           ++  D  +
Sbjct: 125 KQQHDTIR 132


>gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
 gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
          Length = 228

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+V+    ++++        GF+V  A S  EA E   +  LP+ +++D  + G    
Sbjct: 4   TILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEA-ESAIRAALPDLVILDWMLPGQSGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
                +R      ++ +  L   V  E  + G  AGA+ ++ KPF+ + +
Sbjct: 63  ALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEM 112


>gi|24375490|ref|NP_719533.1| response regulator [Shewanella oneidensis MR-1]
 gi|24350350|gb|AAN56977.1|AE015831_1 response regulator [Shewanella oneidensis MR-1]
          Length = 357

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S    ++   L +D  + +  ATS  +A      E +P+ +++D  M  +  F 
Sbjct: 10  VLVVDDSADNIQILHGLLSDK-YSIRAATSGAKALALAAIEPMPDLILLDVMMPEMDGFQ 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  PL   + + ++  + D      G   GA  ++ KP     L   ++    + 
Sbjct: 69  TCIRLKHNPLTRHIPIIFVTAKTDIVDERTGFELGAVDYISKPVKPAILEARVKTHLTLA 128

Query: 122 KSKDENQFLDAI 133
              ++ + L  +
Sbjct: 129 SRANQLESLVQL 140


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LLV+    +R+         GF V  A    E   +  +E+  +  +ID  +  +  +
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R    G    V  L     ++  + G + GA+ +L+KPF+ E L   +  L + 
Sbjct: 61  ELIKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118


>gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 244

 Score =  132 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + K+         + V  AT++ +A    E     + +++D  +     
Sbjct: 14  QHILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIE-HKKLDLILMDRMLPDGDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ   G +V +  L  +     ++ G  AGA+ +L+KPF+   LR  ++ L +
Sbjct: 73  IMLCEQLRQD--GKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLR 130

Query: 120 MQKSKDEN 127
             K++ E 
Sbjct: 131 RGKTQHEQ 138


>gi|295696488|ref|YP_003589726.1| response regulator receiver protein [Bacillus tusciae DSM 2912]
 gi|295412090|gb|ADG06582.1| response regulator receiver protein [Bacillus tusciae DSM 2912]
          Length = 168

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +R++        G+    A +   A E   +E  P+ L++D  +     
Sbjct: 5   QKVLVVDDDEELRELVELYLRSHGYRTASAENGRRALELLCRE-QPDLLILDVLLPDVNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +R     +DV V +L  +     ++AG   G + +L KPF+   L   ++   +
Sbjct: 64  VELCRMIR---RSSDVPVLFLSWKGTPGDIVAGLEEGGDDYLTKPFDPMVLVARVKARLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 242

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        GF V    S   A         P+ LV+D  +  +  F
Sbjct: 19  KVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSP-PDLLVLDVMLPDIDGF 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +   R    G  +   +L      E  + G   G + ++ KPF    L   +R + +   
Sbjct: 78  MLCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAG 137

Query: 123 SKD 125
           + D
Sbjct: 138 AAD 140


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++++VD    +R++      + G+ V +A +  E  E  +K  + + +V+D  M  +   
Sbjct: 5   TIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEV-HLIVLDIMMPKIDGI 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++     + +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    + +         G+ V       +  E    E   + +++D  + G  
Sbjct: 1   MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAI-EKNYDIILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      +  +  L         + G  +GA+ +L KPF  E L   +R + 
Sbjct: 60  GIEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIF 116

Query: 119 QMQKSKD 125
           + ++ ++
Sbjct: 117 RREQKEE 123


>gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
 gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
           azollae' 0708]
          Length = 338

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 3/115 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD +    ++   +    GF V +  S   A +  + E  P+ +++D +M  +   E
Sbjct: 13  ILIVDDNPDNLRLLSKMLESKGFKVKKTVSGEIAIQAAKIEP-PDLILLDINMPDMNGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
               ++      ++ + ++         I     G   ++ KPF    +   +R 
Sbjct: 72  VCRQLKSQEKTANIPIIFISALDQTTDKIIAFEIGGGDYITKPFQELEVLARVRN 126


>gi|224536905|ref|ZP_03677444.1| hypothetical protein BACCELL_01781 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521493|gb|EEF90598.1| hypothetical protein BACCELL_01781 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 472

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+ +  +        +   + V  AT+  EA E  +     N +V D  M  +  F 
Sbjct: 228 VLVVEDNPEMLAFIERQLSSQ-YAVITATNGKEALEALDSN-FVNLVVSDVVMPLMDGFE 285

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++     + + +  L  + + +  I G   GA+S++ KPF+ E L   +  L   +
Sbjct: 286 LCKTIKSNVGYSHIPIILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLINNR 345

Query: 122 KSKDEN 127
           +    +
Sbjct: 346 EKLRRD 351


>gi|42523020|ref|NP_968400.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100]
 gi|39575225|emb|CAE79393.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100]
          Length = 468

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    +R+    +    G+ +  A    +A++   K+   + ++ D  M   
Sbjct: 1   MKSRILVVDDEESIREFLEIMLKKEGYEITLAEDGQKAKDLLAKKT-FDMIISDLQMPHV 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E + HV+      D     +      E  +   + GA  +L KPF  + +R  ++  
Sbjct: 60  TGIELLKHVK--ESYPDTVFMLITAFGTTETAVEAMKMGAYDYLTKPFKIDEVRLNIQNA 117

Query: 118 PQMQKSKDENQFLD 131
            + +  + EN+ L 
Sbjct: 118 LRSRNLEVENRSLK 131


>gi|37528607|ref|NP_931952.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36788046|emb|CAE17166.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + L    GF V  A    +A +F +  +    L I    +  +
Sbjct: 1   MHKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALKFLDDSIDLLLLDIMMPRKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R         V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  TTLKELRLH---HQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQ 128
               ++ Q
Sbjct: 118 SNWSEQQQ 125


>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
 gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
          Length = 221

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  V     +  G+         E  ++  ++  P+ +++D  +       
Sbjct: 2   ILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWV-RQYNPDLILLDLMLPNRDGL- 59

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   +D+ +     +VD    + G   GA+ ++ KP++   L   ++ + + 
Sbjct: 60  DIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRR 116


>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
 gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+++    + ++ R       +    A +  E  E  ++      +++D  +  + 
Sbjct: 1   MERILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYR-LVLLDLMLPDMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++     + +  +  + +   MI G   GA+ ++ KPFN   L   ++   
Sbjct: 60  GYEICRQIREISE---IPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHI 116

Query: 119 QM 120
             
Sbjct: 117 AR 118


>gi|307300861|ref|ZP_07580636.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320002|ref|ZP_07599424.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306894379|gb|EFN25143.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306904395|gb|EFN34980.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 230

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    +++  R      G+ V EA +  +A +       P+ +++D  +  +   
Sbjct: 5   RILVVDDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTA-APDVVILDLGLPDMDGK 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A++R     + V +  L       + IA    GA+ ++ KPF    L   +R   + 
Sbjct: 64  DVVANIRA---WSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRH 120

Query: 121 Q 121
           +
Sbjct: 121 R 121


>gi|254796867|ref|YP_003081704.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
 gi|254590103|gb|ACT69465.1| Response regulator/GGDEF domain protein PleD [Neorickettsia
           risticii str. Illinois]
          Length = 457

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      K+         + V  A+S   A E   +   P+ +++D  M  +  F 
Sbjct: 5   ILVVDDIPSNIKILEIKLTAKYYQVITASSGVAAIELARQH-QPDVILLDVMMPEMDGFE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  +    D E  + G  +GA+ FL+KP    TL   ++ L + +
Sbjct: 64  TCRRLKSDYSTMHIPVIIVTALNDIENKVEGLSSGADDFLVKPAKDFTLFIRIKSLLRFK 123

Query: 122 KSKDENQF 129
              DE + 
Sbjct: 124 TVLDEVRL 131



 Score = 48.3 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 47  PNYLVIDESME-GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK---MIAGARAGANSFLL 102
            + L+++ S+   +L   + ++       + +  +    D +    +      G N ++ 
Sbjct: 196 FDVLIVNISLSKDLLRLCSAIKSQLKTRSIPIIAI--VDDEDDESLITEITELGINDYIC 253

Query: 103 KPFNRETLRFAMRELPQMQKSKD 125
            P N+      +    + +K +D
Sbjct: 254 VPVNKSEFIARVTTQVKRKKYQD 276


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  M  +  F
Sbjct: 7   RLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIY-DAILLDVMMPEMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTKQTI 132


>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
 gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 237

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA            +++D  M  + 
Sbjct: 9   MK-ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEID 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++   +D+ +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 68  GM-DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 126

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 127 SQGEVTN 133


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +         G+      +     +    E   + +++D  +  + 
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDEN-FDVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  +         ++G   GA+ +++KPF  E L   +R L + 
Sbjct: 60  GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118

Query: 121 QKSKDENQ 128
            + +++ Q
Sbjct: 119 IQIENDQQ 126


>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 234

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      +  + VF+  +  EA E  +K    +  ++D  +  V   
Sbjct: 7   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-AIDLAILDIMLPDVSGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 66  TICQKIREKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 122

Query: 121 QK 122
            K
Sbjct: 123 YK 124


>gi|188995632|ref|YP_001929884.1| putative DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis ATCC 33277]
 gi|33411668|dbj|BAC81440.1| regulator of gingipain and black pigmentation [Porphyromonas
           gingivalis]
 gi|188595312|dbj|BAG34287.1| putative DNA-binding response regulator/sensor histidine kinase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 961

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+ +  +  + + L  D  + V  A +  E       E +P+ ++ D  M  +   
Sbjct: 698 TILLVEDNKDINLLVKLLLCDR-YNVLSAANGKEGIALA-TEHIPDIIITDIMMPIMDGI 755

Query: 63  IAHVR--QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R  Q PL   + +  L  +   +  + G ++G  S+L KPF+ E L   + +L + 
Sbjct: 756 EMTIRMKQSPLLCHIPIVALTAKSTEQDRLEGIKSGVVSYLCKPFSPEELLMRIEQLLKD 815

Query: 121 QKSKDE 126
           ++   +
Sbjct: 816 RELLKK 821


>gi|330983029|gb|EGH81132.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 124

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+ +  +           G+ V  A            E   + +V+D  + G+   
Sbjct: 2   RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHY-DLIVLDIMLPGIDGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     D  V  L      +  + G R+GA+ +LLKPF    L   +  + + 
Sbjct: 61  TLCKRLREDAR-RDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119

Query: 121 QK 122
            +
Sbjct: 120 AQ 121


>gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M SLLL++    +R       +  G  V  A +  +      +E  P+ +V+D  + G+ 
Sbjct: 1   MPSLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKL-REERPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGERESSD 125


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++    + +         G+ V    +  E  E    E   + +++D  + G   +E
Sbjct: 6   VLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAII-EGDFDLVLLDIMLPGLSGME 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+      + +  L  + D    + G   GA+ ++ KPF  E L   MR + +  
Sbjct: 65  ICRRVRKESE---IPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRN 121

Query: 122 K 122
           K
Sbjct: 122 K 122


>gi|300868652|ref|ZP_07113264.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333346|emb|CBN58456.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 484

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD      ++   +  D G+ +  A    +A     + +  + +++D  M G    E
Sbjct: 13  ILVVDDIPENLRLLAGILADRGYRIRPARDGFQALSIA-QNIPIDLILLDIMMPGISGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++   +  D+ V ++    +    +     G   ++ KPF  E +   +    QM+
Sbjct: 72  VCQKLKADEVTRDIPVIFISAINEVLDKVKAFAVGGVDYITKPFQAEEVLARVETQCQMR 131

Query: 122 KSKDENQF 129
             +   Q 
Sbjct: 132 FLQKHLQQ 139


>gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 237

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + +V   +    G+   +A    EA +      + + ++ID  M  +  
Sbjct: 4   QTILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGN-VVHLIMIDIMMPKMNG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A ++      ++ +  L  + +    + G   GA+ ++ KPFN + +   ++   + 
Sbjct: 63  LAAVMKIRE-TNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRR 120


>gi|238756867|ref|ZP_04618055.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           aldovae ATCC 35236]
 gi|238704697|gb|EEP97226.1| Response regulator receiver modulated diguanylate cyclase [Yersinia
           aldovae ATCC 35236]
          Length = 309

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   I  +V    F+     V  ATS  +A + C  +  P+ +++D  M  +  F
Sbjct: 9   KILIVDDHPINIQVLYQAFS-ADHNVCMATSGKQALDVCHSQ-QPDLILLDIEMPDMNGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     +D+ V ++   +D E       AGA  F+ KP NR T+R  ++    +
Sbjct: 67  EVCAKLKACTETSDIPVIFVTAHIDEETETRCFSAGAVDFISKPINRNTVRARVKTHLLL 126

Query: 121 QKSKDENQFL 130
           +   D  + L
Sbjct: 127 KAQSDLLRQL 136


>gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 307

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF V  ATS   A    E+ + P+ +++D  M  +  F 
Sbjct: 11  VLLVDDSPEALGFLTDALEQSGFSVLIATSGSAALNIVER-ITPDLILLDAVMPSMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V ++    + E ++    +G   +L KP N + LR  +R   +  
Sbjct: 70  TCRRLKANVGVAQIPVIFMTGLTETEHVVHALESGGVDYLSKPINVDELRARIRVHLRNA 129

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 130 RSAQSARVALDA 141


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ +   + + + +    GF V  A +  EA E   KE   + +++D  M  +  
Sbjct: 697 KEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKI-KEKTYSLIIMDMQMPVMDG 755

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           + A  +    G  V V  L              AG + +L KP  ++ L  A+    ++Q
Sbjct: 756 YTATRKIREKGLKVPVIALTAHTLRGDEAKSLEAGCDGYLGKPVKQKELIDAIVYFLRIQ 815

Query: 122 KSKDENQF 129
           +  +  +F
Sbjct: 816 EELETTRF 823


>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    +R++  +     G+ VF A    EA      E   +  V+D  M    
Sbjct: 1   MIHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEA-SALLAEEQVHLAVVDVMMPNKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R      DV V  L  +        G   G + +L KPF    L F ++ L 
Sbjct: 60  GYQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALL 116

Query: 119 QMQKSKDENQ 128
           +  +    ++
Sbjct: 117 RRYQMVSADK 126


>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
 gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V      +  + V++  +  EA + C   +  +  ++D  +  +  F
Sbjct: 2   NILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALD-CIGGMKIDLAILDIMLPDIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++Q+       V  L  + ++   I G   GA+ ++ KPFN   L   ++   +   
Sbjct: 61  -QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 123 SKDE 126
             +E
Sbjct: 120 QYNE 123


>gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus]
 gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus]
 gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    + ++      + GF V        A  + EKE + +  V+D  +  +  F
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++Q+       V  L  + +    I G   GA+ ++ KPFN   +   ++   +  +
Sbjct: 63  -QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121

Query: 123 SKDE 126
             ++
Sbjct: 122 RYNQ 125


>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 226

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+     R+     F + GF V  A    E       +   + +V+D  + G+  
Sbjct: 3   RRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHA-TDGGFDAMVLDRMLPGLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G +  V  L      ++ + G RAGA+ +L+KPF+ + L   +  L +  
Sbjct: 62  LALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRP 121

Query: 122 KSKDENQFLD 131
           +   E   L 
Sbjct: 122 QDTQEATVLA 131


>gi|87125700|ref|ZP_01081544.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86166676|gb|EAQ67939.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 246

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     + +VD    +R++      D G+ V   + V +     + +  P+ +V+D  M 
Sbjct: 6   MTRTTMIWVVDDDPELRQMVGTYLIDQGYEVRCLSDVKQFEARLDFQ-RPDLVVLDLMMP 64

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           G     A  R      D+ V  L  + D    I G   GA+ +L KPF    L   +  +
Sbjct: 65  GDDGLTALRRLRDADDDLPVVMLTAKGDGIDRIIGLEQGADDYLAKPFLPRELSARIEAV 124

Query: 118 PQMQ 121
            + +
Sbjct: 125 LRRR 128


>gi|330721354|gb|EGG99427.1| Two component Transcriptional regulator2C Winged helix family
           [gamma proteobacterium IMCC2047]
          Length = 233

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +  L+VD   ++R+     F  +G     A +  EA          + L +D  M G
Sbjct: 1   MKKVRYLIVDDDEVIRESLAAYFEKYGIECDLAANAEEA-RHFLSNGQYDLLTVDVVMPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
              +E    ++       + V  L    D    +AG   GA+ ++ KPF+   L    + 
Sbjct: 60  ESGIELTKWIKA--EFAHMPVILLTALDDAIDTVAGLEVGADDYVSKPFDFRVLLARAKA 117

Query: 117 LPQMQKSK 124
           + +  +++
Sbjct: 118 VLRRYEAE 125


>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 233

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + ++        G+ V   +     RE    +  P+ +++D  + G+ 
Sbjct: 1   MPNILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDP-PDLVILDLMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + +  L    D    + G   GA+ ++ KP     L   +R L 
Sbjct: 60  GLQVCRLLRADSAT--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117

Query: 119 QMQKSKDEN 127
           +     +  
Sbjct: 118 RRSSLTEPQ 126


>gi|239908802|ref|YP_002955544.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239798669|dbj|BAH77658.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 384

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   I   +           V  A     A +    E  P+ +++D  M G+ 
Sbjct: 1   MGKVLIVDDERINIHILSAAL-KNDHSVIIAIDGTTAIDLALSE-RPDLILLDIMMPGMD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                + ++  P   D+ + ++    D +    G   GA  ++ KPFN   ++  ++   
Sbjct: 59  GYEACSKLKASPATRDIPIIFITALSDAKSESHGLECGAIDYITKPFNVALVKSRVKNHV 118

Query: 119 QMQKSKD 125
           +++ ++D
Sbjct: 119 ELKIARD 125


>gi|239907737|ref|YP_002954478.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239797603|dbj|BAH76592.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 305

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     V         + V  A+S  +A    E E  P+ +++D  M  +   
Sbjct: 9   TILIVDDAPSNLAVLTEALRSE-YEVRIASSGSQALRLVE-ESAPDLILLDILMPDMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      ++ + +L  + D      G   GA  +++KP +   ++  +R   ++
Sbjct: 67  EVCRRFKARAATRNIPIIFLTAKGDVADETLGLALGAVDYIVKPVSVPIVQARVRTHVEL 126

Query: 121 QKSKDENQFLD 131
           ++  D  + L 
Sbjct: 127 KRRGDLLETLS 137


>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
 gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
          Length = 243

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 15  NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 73

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 74  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 130

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 131 RYTYFNQN 138


>gi|172035362|ref|YP_001801863.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171696816|gb|ACB49797.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 121

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++LLV+ S   +++   +    G+ V  A    +A E   KE  P+ +V+D  M  + 
Sbjct: 1   MRAVLLVEDSPAQQRMIATILKKNGWQVIIAEDGIQALETI-KEASPDLIVLDIVMPKMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V +     + +      G + GA++++ KPF    L   +++L 
Sbjct: 60  GYEVCRRIKTNPSTQNVPIVMCSSKGEEFDRYWGIKQGADAYIAKPFEDIELIGTIQQLL 119

Query: 119 QM 120
           + 
Sbjct: 120 RQ 121


>gi|157151302|ref|YP_001449801.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157076096|gb|ABV10779.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 228

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    + +V        G+ V    +  EA     +    N +++D  M  +   
Sbjct: 2   RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTY-NVIILDIMMPIMTGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A       G    V  L    + +  + G  AGA+ +L KPF+ + L   +R + +   
Sbjct: 61  EALKEIRATGNTTHVIMLTAMAEVDDRVNGLDAGADDYLTKPFSLKELLARLRSMARRAD 120

Query: 123 SKDENQF 129
           +    Q 
Sbjct: 121 NYSPVQL 127


>gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1198

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+ D                   V  AT   EA +  +   + + +++D  M  +  
Sbjct: 1076 KTVLIADDDVRNIFSLTKALEQHKMKVLAATDGKEALQILKDNPMVDVVLMDMMMPEMDG 1135

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R++     + +  +  +           AGA+ ++ KP + + L   +R   
Sbjct: 1136 YESTREIRKISAYKHLPILAVTAKAMMGDREKCIAAGASDYISKPVDVDQLISLLRVWL 1194



 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 9/125 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++      K   +      +    A       E       P  +++D  +     
Sbjct: 806 KVILIIEDDTNFAKTLLNFTRKRDYKGIVAVRGDVGIELA-NHYKPLAILLDIQLPVKDG 864

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF---AMRE 116
              +  ++  P+   + V+ +      E        GA  F+ KP   E ++     + +
Sbjct: 865 WQVMEELKSNPVTKPIPVHIMSSL---EMRKKSLLRGAVDFINKPVALEQMKQIFTKLED 921

Query: 117 LPQMQ 121
                
Sbjct: 922 ALSRH 926



 Score = 53.3 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/107 (10%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +    +   +  +++      A +V ++     K+ + + +++D  +     
Sbjct: 928  KKVLIVEENKQHAEALSYFLSNYNIQTEIAGNVGDSIGALHKKEV-DCVILDMGIPDKNA 986

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLK 103
             + +  +++     ++ +     +      E  I      A+S ++K
Sbjct: 987  YDTLETIKKSEGLENLPIIIFTGKNLSKGEETRIRQY---ADSIVVK 1030


>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+    A    EA            +++D  M  + 
Sbjct: 1   MK-ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++   +D+ +  L  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            + +  N
Sbjct: 119 SQGEVTN 125


>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 233

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++    + ++ R       F V    S     +   +E   + +++D  +  +  
Sbjct: 6   KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDY-DLIILDIMLPKMNG 64

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++    
Sbjct: 65  FEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIA 121

Query: 120 MQKSKDEN 127
             +    N
Sbjct: 122 RYERLSGN 129


>gi|218889743|ref|YP_002438607.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58]
 gi|218769966|emb|CAW25728.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa LESB58]
          Length = 795

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA E   +E  P+ +++D  M  +  F
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R +P   ++ V  L              AG + ++ KP   E L+  + +  
Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|163756770|ref|ZP_02163880.1| transcriptional regulator [Kordia algicida OT-1]
 gi|161323287|gb|EDP94626.1| transcriptional regulator [Kordia algicida OT-1]
          Length = 348

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL++   I+R+    L     + V  A +     E   ++  P+ +V D  M    
Sbjct: 1   MKKVLLIEDDTILRENTAELLELADYDVVTAPNGKVGVETALQDS-PDIIVCDIMMPALD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + +      +   +L  + + + +  G   GA+ ++ KPF  E L  A+    
Sbjct: 60  GYGVLEALSKNDATKYIPFIFLSAKTERQDIRKGMDLGADDYITKPFEEEELISAIESRI 119

Query: 119 QMQKSKDENQ 128
                  + +
Sbjct: 120 AKAAILKDER 129


>gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + LV+    +     ++    GF V        A E       P+  ++D  +  +  F
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R +     + V +L    D    + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 64  ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121


>gi|15800395|ref|NP_286407.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H7 EDL933]
 gi|15829976|ref|NP_308749.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750624|ref|ZP_02775646.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4113]
 gi|168757145|ref|ZP_02782152.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4401]
 gi|168764936|ref|ZP_02789943.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4501]
 gi|168767133|ref|ZP_02792140.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4486]
 gi|168777018|ref|ZP_02802025.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4196]
 gi|168779177|ref|ZP_02804184.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4076]
 gi|168786846|ref|ZP_02811853.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC869]
 gi|168802543|ref|ZP_02827550.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC508]
 gi|195939038|ref|ZP_03084420.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807283|ref|ZP_03249620.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4206]
 gi|208816300|ref|ZP_03257479.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4045]
 gi|208823237|ref|ZP_03263555.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398256|ref|YP_002269320.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4115]
 gi|217324143|ref|ZP_03440227.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. TW14588]
 gi|254791844|ref|YP_003076681.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H7 str. TW14359]
 gi|261224150|ref|ZP_05938431.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257844|ref|ZP_05950377.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli O157:H7 str. FRIK966]
 gi|291281629|ref|YP_003498447.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O55:H7 str. CB9615]
 gi|331651698|ref|ZP_08352717.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli M718]
 gi|12513597|gb|AAG55015.1|AE005247_6 regulator of kdp operon (transcriptional effector) [Escherichia
           coli O157:H7 str. EDL933]
 gi|13360180|dbj|BAB34145.1| transcriptional regulator of kdp operon [Escherichia coli O157:H7
           str. Sakai]
 gi|187767648|gb|EDU31492.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015200|gb|EDU53322.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4113]
 gi|189003036|gb|EDU72022.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4076]
 gi|189355800|gb|EDU74219.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4401]
 gi|189363566|gb|EDU81985.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4486]
 gi|189365151|gb|EDU83567.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4501]
 gi|189373100|gb|EDU91516.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC869]
 gi|189375482|gb|EDU93898.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC508]
 gi|208727084|gb|EDZ76685.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4206]
 gi|208732948|gb|EDZ81636.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4045]
 gi|208737430|gb|EDZ85114.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159656|gb|ACI37089.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. EC4115]
 gi|209776678|gb|ACI86651.1| transcriptional regulator of kdp operon [Escherichia coli]
 gi|209776680|gb|ACI86652.1| transcriptional regulator of kdp operon [Escherichia coli]
 gi|209776682|gb|ACI86653.1| transcriptional regulator of kdp operon [Escherichia coli]
 gi|209776684|gb|ACI86654.1| transcriptional regulator of kdp operon [Escherichia coli]
 gi|209776686|gb|ACI86655.1| transcriptional regulator of kdp operon [Escherichia coli]
 gi|217320364|gb|EEC28788.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O157:H7 str. TW14588]
 gi|254591244|gb|ACT70605.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli O157:H7 str. TW14359]
 gi|290761502|gb|ADD55463.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli O55:H7 str. CB9615]
 gi|320193092|gb|EFW67732.1| DNA-binding response regulator KdpE [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638130|gb|EFX07894.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H7 str. G5101]
 gi|320643534|gb|EFX12704.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H- str. 493-89]
 gi|320648869|gb|EFX17496.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H- str. H 2687]
 gi|320654453|gb|EFX22500.1| DNA-binding transcriptional activator KdpE [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660027|gb|EFX27561.1| DNA-binding transcriptional activator KdpE [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664933|gb|EFX32068.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326341436|gb|EGD65228.1| DNA-binding response regulator KdpE [Escherichia coli O157:H7 str.
           1044]
 gi|326345783|gb|EGD69522.1| DNA-binding response regulator KdpE [Escherichia coli O157:H7 str.
           1125]
 gi|331049976|gb|EGI22034.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli M718]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ + + +K+        G+    A++  EA    + E +   ++ D  M  + 
Sbjct: 1   MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEV-QLIITDIMMPMMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R      +V +  +  +   E M  G   GA+ +++KP   + L   ++ L 
Sbjct: 60  GYQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117

Query: 119 QMQKSKDENQFL 130
           +      ++Q +
Sbjct: 118 RRANIVAQHQLI 129


>gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+ D    +    +   +  GF V  A    EA +   K  + + L+ID  M  + 
Sbjct: 1   MELILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRV-DLLIIDIMMPVLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I    ++   + V +  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 60  G-IRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 118

Query: 121 QK 122
            K
Sbjct: 119 YK 120


>gi|319900883|ref|YP_004160611.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415914|gb|ADV43025.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 1357

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD +       +   + + F V  A    EA      EL+P+ +V D  M  +    
Sbjct: 1106 VLVVDDNGDFIDFMKDSLSLY-FSVQSAPDGAEAW-KVIPELMPDLIVSDLMMPEMDGNE 1163

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                VR      ++    L  +   E  + G   GA+ ++ KPFN E L   MR+L  + 
Sbjct: 1164 LCRRVRADKRTANIPFVLLTAKQSVENKVEGLTIGADDYVTKPFNVEVLILRMRKLIDLS 1223

Query: 122  KSKDENQFLD 131
                    +D
Sbjct: 1224 GRSKLRTRID 1233


>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 233

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + ++        G+ V   +     RE       P+ +++D  + G+ 
Sbjct: 1   MPNILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNP-PDLVILDLMLPGLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G  + +  L    D    + G   GA+ ++ KP     L   +R L 
Sbjct: 60  GLQVCRLLRDDSAG--LPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLL 117

Query: 119 QMQKSKDEN 127
           +     +  
Sbjct: 118 RRSSLSEPQ 126


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +      ++ R      G  V        A +       P+ +V+D  M     L
Sbjct: 4   RILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRART-TRPDLIVLDVMMPQVDGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R     + V +  L      E M+ G   GA+ ++ KP++   L   +R L + 
Sbjct: 63  DVCRILRTD---SQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRR 119

Query: 121 QKS 123
            ++
Sbjct: 120 SRA 122


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R       F V    +     E    E   + +++D  +  + 
Sbjct: 1   MSKILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEY-SLILLDLMLPDMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ +  +  + +    I G   G + ++ KPF+   L   ++   
Sbjct: 60  GFEICRQIREK---KDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   +       + +++D  +  +   
Sbjct: 2   RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEG-HYLGDAEPYDAVILDIGLPEMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118


>gi|187730233|ref|YP_001879307.1| DNA-binding transcriptional activator KdpE [Shigella boydii CDC
           3083-94]
 gi|187427225|gb|ACD06499.1| KDP operon transcriptional regulatory protein KdpE [Shigella boydii
           CDC 3083-94]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|332521696|ref|ZP_08398149.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332042785|gb|EGI78985.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 235

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LL D         +       F VF A    EA +  +     +  +ID  M  +  
Sbjct: 4   KSILLADDDIDFGTTLKQYLELNKFEVFWAKDGAEALDLFKMHT-FDICIIDVMMPKLDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +      +    +L      E  I G   GA+ ++ KPF  E L   +  + +  
Sbjct: 63  FKLSKKISKKNAETPFLFLTARKTKEDRIKGLSLGADDYITKPFEVEELILRINNIIKRT 122

Query: 122 KSKD 125
           K   
Sbjct: 123 KQHK 126


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L++D           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1074 KILIIDDDIRNVFALTSVLERHGATVVYAENGREGIEQLERNEDVALVLMDIMMPEMDGW 1133

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + +R+MP   D+ +  L  +V          +GA+ ++ KP + + L   +R     
Sbjct: 1134 ATTSAIRKMPQFADLPIIALTAKVMHGDREKSIASGASDYVPKPVDVDLLLDRLRGWLAQ 1193

Query: 121  QKSKD 125
             +S+ 
Sbjct: 1194 SRSER 1198


>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +        A     +EL P+ +V+D  +  +   
Sbjct: 44  RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGAL-RAARELRPDAVVLDMMLPDMDGL 102

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E+ +AG  AG + ++ KPF  E +   +R L +   
Sbjct: 103 SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 162

Query: 123 SKDE 126
           + D 
Sbjct: 163 AADR 166


>gi|170767948|ref|ZP_02902401.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           albertii TW07627]
 gi|170123436|gb|EDS92367.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           albertii TW07627]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V +  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPIIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 Q 121
            
Sbjct: 119 H 119


>gi|148239785|ref|YP_001225172.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848324|emb|CAK23875.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 241

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +VD    +R++      D G+ V   + V +  E   +   P+ +V+D  M G     
Sbjct: 7   IWVVDDDPELRQMVGTYLIDQGYDVRSLSDVKQ-LEARLEFQRPDLIVLDLMMPGDDGLT 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A  R    G D+ V  L    +    I G   GA+ +L KPF    L   +  + + + S
Sbjct: 66  ALRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSS 125


>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 226

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +           G+ V  A           +    + L++D  +     +
Sbjct: 2   RILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHY-DLLILDWMLPHQSGV 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       + + +L  +      + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 61  EMCQQLRL--KNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + K  +    +  + V  A +  +       E   + +V+D  + G+ 
Sbjct: 1   MK-ILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENY-DLIVVDIMLPGIN 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R    G      +L         + G   GA+ +++KPF+   L   +R   
Sbjct: 59  GKEVLKQIRN--TGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACM 116

Query: 119 QMQ 121
           + +
Sbjct: 117 RRR 119


>gi|82543127|ref|YP_407074.1| DNA-binding transcriptional activator KdpE [Shigella boydii Sb227]
 gi|81244538|gb|ABB65246.1| regulator of kdp operon [Shigella boydii Sb227]
 gi|320184398|gb|EFW59208.1| DNA-binding response regulator KdpE [Shigella flexneri CDC 796-83]
 gi|332097765|gb|EGJ02739.1| KDP operon transcriptional regulatory protein kdpE [Shigella boydii
           3594-74]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB]
 gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 787

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LL + S + R+V   +  D   +V    +   A E   +E   + +++D  M  +  
Sbjct: 661 RSVLLAEDSWVNREVVVEMLEDQLLVVDVVENGVAAVERV-RERDYDLVLMDVQMPEMDG 719

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                 +R MP    + +  L      E   A   AG N +L KPF+ + L   +
Sbjct: 720 LEATRRIRAMPQRERLPIIALTANAFAEDRQACLEAGMNDYLAKPFSPDKLFARV 774


>gi|254229630|ref|ZP_04923041.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262393833|ref|YP_003285687.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151937829|gb|EDN56676.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262337427|gb|ACY51222.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +        + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMQLDYADNGELGLKLAMDN-AFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + ++ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTLCNKLRDAGNNTPVLMLTALDSRDDVLKGFQHGADDYLTKPFDLDILEARMTALIKR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|323496265|ref|ZP_08101323.1| chemotaxis protein CheY [Vibrio sinaloensis DSM 21326]
 gi|323318542|gb|EGA71495.1| chemotaxis protein CheY [Vibrio sinaloensis DSM 21326]
          Length = 119

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L VD S  +R++  H   D G+ V  A    +A          + ++ D +M  + 
Sbjct: 1   MTKILAVDDSVSIRQMVSHTLRDAGYDVETANDGRDALSKI-TGTKFDVVISDVNMPNMG 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R+ P    V +  L  E   +K + G  AGA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFELVKALREKPQYKFVPILMLTTETSADKKMQGKSAGATGWLVKPFNPETLLKTLKRVV 119


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ R       + V          +   +E     +++D  +    
Sbjct: 1   MKRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQED-FALILLDVMLPKED 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R +    +V +  +  + +    I G   GAN +++KPFN   L   ++     
Sbjct: 60  GF-QVCRNLRASKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIAN 118

Query: 121 QKSKDE 126
            +   +
Sbjct: 119 YERLTQ 124


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +  +++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|315501605|ref|YP_004080492.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315408224|gb|ADU06341.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 226

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R      G+ V  A S             P+ +V+D  +  + 
Sbjct: 1   MTRILVVDDEPQILRALRINLRARGYDVEVADSGAA-ALKAAAGHPPDLVVLDLGLPDLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   T V +  L      E  +A   AGA+ ++ KPF  + L   +R + + 
Sbjct: 60  G-TDVIRGLRGWTAVPIIVLSGRAGSEDKVAALDAGADDYVTKPFGVDELLARIRAVTRR 118


>gi|256393258|ref|YP_003114822.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
 gi|256359484|gb|ACU72981.1| GAF sensor hybrid histidine kinase [Catenulispora acidiphila DSM
            44928]
          Length = 1588

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             S+L++D           +    G  V +A    +  +  + +     +++D  M  +  
Sbjct: 1468 RSVLVIDDDARNLFALTGMLEMHGMRVVDAEDGVKGIQALQNDPRIEVILMDVMMPEMDG 1527

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R MP   D+ +  +  +           AGAN ++ KP +   L  +++ + 
Sbjct: 1528 YEATARIRTMPEHADLPIIAVTAKAMNGDREKSLAAGANDYVTKPVDAAVLIESIQRVL 1586


>gi|225872108|ref|YP_002753563.1| two-component osmotic transcriptional regulator kdpE, winged helix
           family [Acidobacterium capsulatum ATCC 51196]
 gi|225794265|gb|ACO34355.1| two-component osmotic transcriptional regulator kdpE, winged helix
           family [Acidobacterium capsulatum ATCC 51196]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + +V R       + +F A++  EA +    E+ P  ++ D +M  +   
Sbjct: 2   RILVVDDEPQIVRVLRAALQSNDYEIFTASNGAEALQVYL-EVNPALVITDLAMPEMDGV 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ        V  + +     + I     GA+ ++ KPF  + L   +R   + 
Sbjct: 61  ALTREIRQRAS---TPVIVVSVRNQEREKIRALDEGADDYITKPFAIQELLARVRVQLRR 117

Query: 121 QKSKD 125
              ++
Sbjct: 118 ASERE 122


>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
 gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +    +    + G++V  A    E   +   E     +++D  + G+  F
Sbjct: 2   RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEG-RYLATEGDYALILLDVMLPGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A ++ +   ++V V  L      E  + G + GA+ +L+KPF+   L   ++ L +  K
Sbjct: 61  -AVLQAIRRTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGK 119

Query: 123 SKD 125
            ++
Sbjct: 120 PQE 122


>gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 716

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD           +  ++   V  A +  +A +  E++     +++D  M  +  
Sbjct: 596 KKVLIVDDDSRNVFALATVLENYDMEVIFADNGKKALKLLEEQDNIAIVLMDIMMPEMDG 655

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +R       + +  L  +           AGAN +L KP + + L   MR    
Sbjct: 656 YEAMRKIRAQARFRQLPIIALTAKAMKGDKAKCIEAGANDYLAKPVDTDKLISLMRVWLY 715

Query: 120 M 120
            
Sbjct: 716 R 716



 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++      ++   L  +  F    A     + +  E +  P+ +++D  +  V  
Sbjct: 328 KVLLIIEDERKFSRLLMDLAQENAFKCLVAEDGETSLQLAE-QYKPHAIILDVGLPQVDG 386

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +  ++       + VY++        +    + GA  +LLKP     L  A + +
Sbjct: 387 WTVMERLKDNQDTRHIPVYFISASDQ---VQEAKKMGAIGYLLKPVGMAELEEAFQNI 441



 Score = 39.4 bits (92), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L++       +    L       +    ++  A   C  +   + +++D  +E    
Sbjct: 450 KNVLVITDEKQYHQKIFDLLRSEEIQITPTITMAIAL-RCLHKTRFDCIILDVDIEQGTG 508

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET-LRFAM 114
             F+  + +      + +             A     A + L+K       L   +
Sbjct: 509 INFLEQMEKRESLHQIPLIVYTERDLTTTEEALLLQCAENLLIKSVRTAERLLDEV 564


>gi|254242660|ref|ZP_04935982.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192]
 gi|126196038|gb|EAZ60101.1| hypothetical protein PA2G_03422 [Pseudomonas aeruginosa 2192]
          Length = 795

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA E   +E  P+ +++D  M  +  F
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R +P   ++ V  L              AG + ++ KP   E L+  + +  
Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1323

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +LLV+ + I R+V   L N+ G ++  A +  EA E    +   + +++D  M  +   
Sbjct: 964  RVLLVEDNAINREVVLELLNNSGLVIETAVNGQEALERV-SQHAFDLILMDIQMPLMDGY 1022

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R +P    V +  L      E   A   AG N F+ KP     L  A+++  
Sbjct: 1023 SATRAIRALPGWEQVPILALTASAFEEDRKACESAGMNDFIAKPVTPAKLFEALQQWL 1080


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    ++++ +       + V  A+   E      K+   + +++D  M  
Sbjct: 8   MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQS-FDLILLDVMMPN 66

Query: 59  VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R     ++V +  L    + E  + G   G + ++ KPF+   L   +  
Sbjct: 67  LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 123

Query: 117 LPQMQKSKDENQFL 130
           + +    K+ N  L
Sbjct: 124 VLRRSYDKNVNNHL 137


>gi|163846005|ref|YP_001634049.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523730|ref|YP_002568200.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667294|gb|ABY33660.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447609|gb|ACM51875.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 493

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD   ++R +   +   F   +  A    +A +  ++  LP+ +++D  +  +  
Sbjct: 4   NTILIVDDDELMRSLLIEIITPFNLRLITAQRGDQALQLAQQH-LPDLILLDVMLPDMNG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           F     +R  P    + +  +    D E  I G  AGA+ F+ KPF+   L+  +  +
Sbjct: 63  FEVCQRLRDDPATAQIPIVMITALNDREAKIHGFEAGADEFITKPFDPGELQARINTV 120


>gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437]
          Length = 245

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           +++L+VD    + ++ R    +  F V  A    +A    E+  +   ++ D  M     
Sbjct: 21  NTVLVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLIL-DIMMPEQNG 79

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     ++V + +L    D    I G   G + +++K  +   +   ++ + +
Sbjct: 80  FELCRRIRAK---SNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 136

Query: 120 MQKSKDENQ 128
              S+ + +
Sbjct: 137 RSASQQQME 145


>gi|310643960|ref|YP_003948718.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248910|gb|ADO58477.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1238

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +   +   V  A +  EA E  E+    + +++D  M  +  
Sbjct: 1118 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALEMLEQTPDFDLVLMDMMMPEMDG 1177

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R MP    + +  L  +   +       AGA+ ++ KP   E L   MR   
Sbjct: 1178 YEAMRRIRLMPQFEKLPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1236



 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++       +   + +  GF    A    +         LP+ +++D  +  +  
Sbjct: 850 KVLLIIEDDINFANILYDMAHSRGFKALIALKGDDGLNMA-HSYLPDAIILDIQLPVMDG 908

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
              +  ++       + V+ + +    + +  G   GA ++L KP ++E+L
Sbjct: 909 WSILGELKGNSSTRHIPVHVISV---IDDVKQGLMMGAIAYLKKPSSKESL 956



 Score = 73.7 bits (181), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+     RK    L +     +   ++  EA      +   + +V+D  +  +  
Sbjct: 972  KRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGKEALNELATQRY-DCMVLDLMLSDMTG 1030

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E +  +R+    TD+ +     +    K     R  A S ++K   + E L  
Sbjct: 1031 FELLDRIRENEQLTDLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1084


>gi|307545687|ref|YP_003898166.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217711|emb|CBV42981.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 241

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +L++VD    +R +        G+    A    EA         P+ LV+D  + G   F
Sbjct: 7   TLVVVDDDPEIRDLLADYLTRHGYRALMAED-AEALRALLATERPDLLVVDLMLPGDDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR+      V +  L    D    I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 66  AICREVRRDSE---VPIIMLTASPDETDRILGLELGADDYLGKPFNPRELLARVKAVLRR 122

Query: 121 QKSK 124
            + +
Sbjct: 123 CRPR 126


>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+         E  E C  E   + +++D ++ GV    
Sbjct: 3   ILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENY-DLILLDLNLPGVDGLE 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +     T   V  L      +  + G   GAN +L KPF+ E L   +R L + +  
Sbjct: 62  ILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFI 121

Query: 124 KD 125
           + 
Sbjct: 122 QQ 123


>gi|323343098|ref|ZP_08083329.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463162|gb|EFY08357.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R + +      G+ V  A+   +A    ++ +    +++D  M  + 
Sbjct: 1   MKKILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRALDESIK--LVILDVMMPEIT 58

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +V + ++  +   +    G   G + +L KPF+   L   ++ L 
Sbjct: 59  GFEVSEAIRKH---YNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLL 115

Query: 119 QM 120
           + 
Sbjct: 116 RR 117


>gi|256421717|ref|YP_003122370.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256036625|gb|ACU60169.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1013

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +  +    + + +   + V  A++  EA     +E  P  +V D  M  +  F 
Sbjct: 607 ILVVDDNSQMANYIQKMLSRH-WKVITASNGREALSLIYQE-APALVVSDVMMPDMNGFE 664

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++     +++ V  L      E  I G   GAN +++KPF  + L   +    Q++
Sbjct: 665 LLNAIKSDVEISNIPVILLSARAGKEATIEGLEKGANDYIIKPFYADELIARVSTQLQLR 724

Query: 122 KSKDENQFLDA 132
           K++  N  L  
Sbjct: 725 KAELANTHLRE 735


>gi|239906625|ref|YP_002953366.1| putative NtrC family two-component response regulator
           [Desulfovibrio magneticus RS-1]
 gi|239796491|dbj|BAH75480.1| putative NtrC family two-component response regulator
           [Desulfovibrio magneticus RS-1]
          Length = 460

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + +V        G+ V  A +  EA E   ++ +   ++ D  M G+  
Sbjct: 10  KTILVVDDDPHILEVLEVRLVSAGYDVVPAANGLEALEVLSRQPVR-LVISDMRMPGMDG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G  + + +L         +   + GA  +L KPF+ + L   + ++    
Sbjct: 69  MRMLEEMERRGIKLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLARVTDVFAKA 128

Query: 122 KSKDENQFLDA 132
              D  + + A
Sbjct: 129 AGLDAAKTIKA 139


>gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    + +          F    A      ++    E   + +++D ++ G+ 
Sbjct: 1   MKKILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMAL-EKKFDLVLLDVNLPGMK 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R       + +  L    + E  + G  +GA+ +++KPF+   L   +    
Sbjct: 60  GYDVCQQLRVYK--PSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAAL 117

Query: 119 Q 119
           +
Sbjct: 118 R 118


>gi|254411375|ref|ZP_05025152.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181876|gb|EDX76863.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 779

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL+D      K       + G+ V  A S  +  +  E +L P+ +++D  M  +  F
Sbjct: 15  KILLIDDRVENLKPISDCLQNTGYEVRIAKSGIKGLKLLE-QLTPDLIILDVIMPEMDGF 73

Query: 63  --IAHVRQMPLGTDVFVYYLLME---VDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               H++      D+ V ++       + E  + G   GA  ++ KP   + +   ++  
Sbjct: 74  ETCRHLKTWEKTKDIPVIFMTAAMDTSNSEAKVKGLSLGAVDYITKPIQVDEVLARIKTH 133

Query: 118 PQMQ----KSKDENQFLD 131
             ++    + + +N  L 
Sbjct: 134 LHLRFLTLQLQQQNIRLQ 151


>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 230

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+++    +      +     + V       +A E   + L P  +V+D  + G 
Sbjct: 1   MKTRILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNR-LHPALIVLDVMLPGL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +    +R   +  +  +  L  +      + G   GA+ ++ KPF    L   ++ L
Sbjct: 60  SGYDVCKQLRAKKI--NTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQAL 117

Query: 118 PQMQK 122
            +  +
Sbjct: 118 LRRIE 122


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+V+    +R+         G++V +A    E      ++   +  +ID  +     L
Sbjct: 2   RLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMA-RDYPLDLAIIDLGLPRFSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R    G  + V  L     ++  + G  AGA+ +L+KPF    L   ++ L + 
Sbjct: 61  ELIRALRAD--GRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRR 118


>gi|325859665|ref|ZP_08172795.1| response regulator receiver domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|325482591|gb|EGC85594.1| response regulator receiver domain protein [Prevotella denticola
           CRIS 18C-A]
          Length = 716

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +  +R   +    D  + V  A+   +  +   KE +P+ +V D  M  +   
Sbjct: 467 TVLVVDDNKDIRAYLQLTLQDT-YRVLLASDGRQGLQLA-KENIPDLIVSDVMMPVMDGL 524

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++   L   + V  L       + I G   GA++++ KPF+ + L+  +  L Q 
Sbjct: 525 ELCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKVRIGNLLQN 584

Query: 121 QKSKDEN 127
           +K   + 
Sbjct: 585 RKRLHQL 591


>gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +     +     G+ V  A    EA E  E    P+ +V+D  M    
Sbjct: 1   MTKVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVES-FHPDVMVLDVMMPRLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +     R++       +  L ++ D    + G   GA+ ++ KPF+   +   ++ L 
Sbjct: 60  GYDVC---RKLENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALS 116

Query: 119 QMQKSKDENQF 129
           +  ++ +  Q 
Sbjct: 117 RRSRTVENVQQ 127


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  V  +    F   GF         E  +   +E   + +++D  +  + 
Sbjct: 1   MK-ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDW-DLVILDIMLPSMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L  +      + G   GA+ ++ KPF+  TL   ++ + 
Sbjct: 59  GVTICRKIRE---TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVI 115

Query: 119 QMQKSKDE 126
           +  ++  +
Sbjct: 116 RRYRATGQ 123


>gi|294675738|ref|YP_003576353.1| response regulator receiver domain/protein phosphatase 2C
           domain-containing protein [Rhodobacter capsulatus SB
           1003]
 gi|294474558|gb|ADE83946.1| response regulator receiver domain/protein phosphatase 2C domain
           protein [Rhodobacter capsulatus SB 1003]
          Length = 409

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S + R++   L +  G+ V EA +  EA + C + + P++++ D  M G+  
Sbjct: 3   RRVLVVDDSKMQRRILSALLSRSGYEVLEAGTAEEALDICGR-IEPDFVLSDWMMPGMSG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---RE 116
           +EF    R MP     +   L  + +   +  G ++GA+ FL KP N + LR  +     
Sbjct: 62  IEFCQQFRAMPREGYGYFILLTSKTEKHDVAEGLQSGADDFLAKPVNGDELRARLMAGER 121

Query: 117 LPQMQKSKDE-NQFLD 131
           +  M+ +  E N+ L 
Sbjct: 122 ILTMEHAMKEKNRQLS 137


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L++D    +R +      + GF   + ++        E++ + + +++D  M  +
Sbjct: 1   MKDRILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEV-DLIILDIMMPQM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  +      ++ +  L  + +    I+G  AGA+ +L KPFN   L   ++   +
Sbjct: 60  NGIEAAFKIREE-KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIR 118

Query: 120 MQKSKDE 126
             K  ++
Sbjct: 119 RYKKYNQ 125


>gi|288959103|ref|YP_003449444.1| two-component response regulator [Azospirillum sp. B510]
 gi|288911411|dbj|BAI72900.1| two-component response regulator [Azospirillum sp. B510]
          Length = 134

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME-- 57
           M  ++L+VD    +    + L    GF V  A    EA    E    P+ +++D  M   
Sbjct: 1   MKPTILVVDDEPSIVLSLQVLMQRAGFDVRIARDGDEALRSVET-FTPDLILLDAMMPKR 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +    +R  P    + +  L       +   G   GA  ++ KPF+   L   +R  
Sbjct: 60  DGFDVCQTLRTNPAWKTLPIIMLTARSRDVERQKGLALGATDYITKPFSTRDLLATVRRH 119

Query: 118 P 118
            
Sbjct: 120 L 120


>gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 231

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L++D    +R+  +   +  G+   EA S  EA    ++E  P   ++D  + G+  
Sbjct: 3   NKILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEE-QPAVAILDIMLPGISG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +         +  +  +      I G   GA+ +++KPFN + L   ++ L +  
Sbjct: 62  FEVCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRRV 121

Query: 122 KS 123
             
Sbjct: 122 NL 123


>gi|119493892|ref|ZP_01624456.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC
           8106]
 gi|119452369|gb|EAW33561.1| Response regulator receiver domain protein (CheY) [Lyngbya sp. PCC
           8106]
          Length = 117

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEF 62
           ++V+ S   R++  +L  D G  V  A+   EA E  +K   P+ +V+D  M  +   E 
Sbjct: 1   MVVEDSVTQREMISNLLKDSGLHVTVASDGVEALEQVQKHC-PDLVVLDIVMPRMNGYEL 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              ++  P    + V     + +      G + GA++++ KPF    L   +++L +
Sbjct: 60  CRRLKSDPKTQSIAVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLR 116


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 51/122 (41%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L++D    + ++        G     + +  EA     +E  P+ +++D  +  + 
Sbjct: 1   MPHVLIIDDERDLAELIDFNLRGSGLTTHVSHTGEEAL-VAAREQNPDLVLLDLMLPDMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++    +R  P    V +  L  + +    I G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GIDVCRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAIL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|305667235|ref|YP_003863522.1| two-component system transcriptional regulator [Maribacter sp.
           HTCC2170]
 gi|88708169|gb|EAR00407.1| two-component system, transcriptional regulatory protein
           [Maribacter sp. HTCC2170]
          Length = 237

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   F V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNNFDVTLAKNGMEGFEKFKKDNY-DVCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           +V + +L  +   E ++ G +AGA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAREIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124

Query: 122 KS 123
            S
Sbjct: 125 AS 126


>gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator
           [Isosphaera pallida ATCC 43644]
 gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family
           [Isosphaera pallida ATCC 43644]
          Length = 236

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L++D    + +V        GF V  A    +     +   LP+ +V+D  +     L
Sbjct: 5   RILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQV-KLPDLIVLDLMLPVKPGL 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R      DV V  L  + +    + G   GA+ ++ KP+  + L   ++     
Sbjct: 64  EVCRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQLNR 123

Query: 121 QKSKD 125
           ++  +
Sbjct: 124 RRQTE 128


>gi|319901471|ref|YP_004161199.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
 gi|319416502|gb|ADV43613.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
          Length = 1345

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            ++L+V+ +  +R+      +   F + EA +  +A +   K+   + ++ D  M  +   
Sbjct: 1099 TVLIVEDNRELRQYLMSSLSAL-FNMLEAENGQKALDIL-KDKEVDLIITDVMMPVMDGV 1156

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + VY L  +VD +  + G + GA+ ++ KPF+ E L+  +  + + 
Sbjct: 1157 KLCKLMKQNLRTCHIPVYMLSAKVDVKYQLEGLQVGADDYIAKPFSMEVLKAKILNMLRT 1216

Query: 121  Q 121
            +
Sbjct: 1217 R 1217


>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
 gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
          Length = 1793

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1673 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1732

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1733 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIDSGASDYVTKPVDPDHLLGVMEQWMR 1791


>gi|239989346|ref|ZP_04710010.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 256

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+V+    +R+  +     +G+ V  A       E        + L++D  +     +
Sbjct: 26  SVLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAH-DLLILDVMLPALDGI 84

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V  +    D   ++AG  AGA+ +++KP +   +   +R L + 
Sbjct: 85  GLCHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 141


>gi|222084364|ref|YP_002542893.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221721812|gb|ACM24968.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 239

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           SLLLV+    +R +         + V EA     A +       P+ +++D  + G    
Sbjct: 5   SLLLVEDDREIRALLEEFLTREDYTV-EAVDSAAAMDRALARGFPDLIILDLMLPGEDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L  + +    I G   GA+ +L KPFN   L   +R + + 
Sbjct: 64  SACRRIRTRSR---VPILMLTAKSEDIDRILGLEMGADDYLGKPFNPRELLARIRAILRR 120

Query: 121 QKSKDENQ 128
              +   +
Sbjct: 121 AGPERPEE 128


>gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD     R+  + +  +  ++VF A++  EA +  +     + +V+D  M  + 
Sbjct: 1   MIHILVVDDDKNTRRFMKAVLEEEQYIVFTASNGVEALDILDTTH-IDLVVLDIMMPKMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R +    ++ +  +  +        G + G + F+ KP + E +   ++ L 
Sbjct: 60  GYEFTEILRSVQN--ELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALL 117

Query: 119 QMQKSKDENQFL 130
           +  K   E + +
Sbjct: 118 RRAKITSERKIM 129


>gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 233

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL+D    + ++         F +  A    E           + +V+D  M    
Sbjct: 1   MLRILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEH-DLVVLDVMMPRFN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             + +  +R     + + V  L  + D    I G   GA+ +L KPFN   L   +R + 
Sbjct: 60  GFDTLRLIRAS---SQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQ 116

Query: 119 QMQKSKDE 126
           +    +DE
Sbjct: 117 RRVVVRDE 124


>gi|86359025|ref|YP_470917.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86283127|gb|ABC92190.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 444

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 1/131 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R+         GF V   ++     E       P  +V D  M G+   
Sbjct: 5   KILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYS-FPGVVVSDIRMPGMDGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   +  +V V  +    D +  +   R GA  F+ KPF  E L   +R   + + 
Sbjct: 64  TLMQKIREIDQEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAMERRG 123

Query: 123 SKDENQFLDAI 133
              EN+ L A+
Sbjct: 124 LVLENRLLKAV 134


>gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 230

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +    +      G+ VF A     A E   KE   +  +ID  M  +   
Sbjct: 4   TILVCDDERDILDAIKIYLKAEGYKVFTAEDGARALEII-KENEIHLAIIDIMMPVMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   +  L + 
Sbjct: 63  TLIMKMREKT-NIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRR 119


>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 268

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARR-FSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|187934520|ref|YP_001884517.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722673|gb|ACD23894.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R             VF+A    EA E    E   + +V+D  M  + 
Sbjct: 1   MYNVLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEK-IHVIVLDIMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L  + +    I G   GA+ +++KPFN   L   ++   + 
Sbjct: 60  GIRTCLKIRE-TENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRR 118

Query: 121 Q----KSKDENQFL 130
                  +DE Q L
Sbjct: 119 YDKPLNIEDEEQVL 132


>gi|163867364|ref|YP_001608558.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
 gi|161017005|emb|CAK00563.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
          Length = 240

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   +R + +  
Sbjct: 68  M-ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVRAILRRS 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 NARNQ 131


>gi|160886208|ref|ZP_02067211.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|237723017|ref|ZP_04553498.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260173666|ref|ZP_05760078.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293372570|ref|ZP_06618952.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299146715|ref|ZP_07039783.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|315921928|ref|ZP_07918168.1| two-component system response regulator [Bacteroides sp. D2]
 gi|156108093|gb|EDO09838.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483]
 gi|229447539|gb|EEO53330.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292632379|gb|EFF50975.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298517206|gb|EFI41087.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|313695803|gb|EFS32638.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + +++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKMDISSY--HLILLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
 gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
          Length = 234

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + +       +    A     A +     + P+  ++D  +  +  
Sbjct: 3   KRILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAIT-MKPDVYILDLGLPDIDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + ++   T   +  +    +    I    AGA+ ++ KPF+ E L   +R   + 
Sbjct: 62  V-ELITKIRSWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRR 119


>gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 229

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD    +R++         + V EA +   A      +     L+    M G   
Sbjct: 4   KTVLIVDDEASIREMIAVALEMADYRVLEADNAQAAHAMVVDDQPDLLLLD-WMMPGTSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    +++     ++ +  L  + + +  I G  AGA+ ++ KPF+   L   ++ + +
Sbjct: 63  IELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAVLR 122

Query: 120 M 120
            
Sbjct: 123 R 123


>gi|83646439|ref|YP_434874.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83634482|gb|ABC30449.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 568

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+VD      K+   +F   GF         E          P+ +++D  M G    
Sbjct: 8   RLLIVDDEQRNTKLLTDIFRAQGFDAIPLNDANEVIGAV-ASYEPDLIILDVMMPGKTGF 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++       + +  L    D +  ++G   GA  ++ KPFNR  L   +  L ++
Sbjct: 67  ELTREIKAQEHWKHIPIILLTALADRDSCVSGLECGAEDYVSKPFNRRELLARVNNLLKL 126

Query: 121 QKSKD 125
           +K  D
Sbjct: 127 KKLHD 131


>gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 228

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A++  +A    +     +  +ID S+    
Sbjct: 1   MKHIFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNK-FDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     DV V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTVCTEIKEK---QDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL 116

Query: 119 QMQKS 123
           +   S
Sbjct: 117 RKSGS 121


>gi|71898251|ref|ZP_00680425.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71731990|gb|EAO34047.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 394

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++ +  +         + G  V  A                + +V+D ++ G+   
Sbjct: 171 RILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHE-FDAIVLDLNLPGMDGI 229

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L      +  + G  +GA+ +L+KPF  + +   +  L + 
Sbjct: 230 EVCRKLR-NEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNALSRR 288

Query: 121 QKSKDENQFLD 131
            K   + + L+
Sbjct: 289 GKGL-QTRVLE 298


>gi|16128670|ref|NP_415222.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli str. K-12 substr. MG1655]
 gi|89107552|ref|AP_001332.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli str. K-12 substr. W3110]
 gi|170080361|ref|YP_001729681.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli str. K-12 substr. DH10B]
 gi|170682921|ref|YP_001742805.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           SMS-3-5]
 gi|188495689|ref|ZP_03002959.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli 53638]
 gi|218699050|ref|YP_002406679.1| DNA-binding transcriptional activator KdpE [Escherichia coli IAI39]
 gi|238899960|ref|YP_002925756.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli BW2952]
 gi|256023705|ref|ZP_05437570.1| DNA-binding transcriptional activator KdpE [Escherichia sp.
           4_1_40B]
 gi|300937843|ref|ZP_07152637.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 21-1]
 gi|300951198|ref|ZP_07165057.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 116-1]
 gi|300959271|ref|ZP_07171343.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 175-1]
 gi|301028821|ref|ZP_07191999.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 196-1]
 gi|301645940|ref|ZP_07245851.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 146-1]
 gi|307137300|ref|ZP_07496656.1| DNA-binding transcriptional activator KdpE [Escherichia coli H736]
 gi|312970765|ref|ZP_07784946.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli 1827-70]
 gi|331641191|ref|ZP_08342326.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli H736]
 gi|2507374|sp|P21866|KDPE_ECOLI RecName: Full=KDP operon transcriptional regulatory protein kdpE
 gi|1786911|gb|AAC73788.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli str. K-12 substr. MG1655]
 gi|85674742|dbj|BAA35351.2| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli str. K12 substr. W3110]
 gi|169888196|gb|ACB01903.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli str. K-12 substr. DH10B]
 gi|170520639|gb|ACB18817.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli SMS-3-5]
 gi|188490888|gb|EDU65991.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli 53638]
 gi|218369036|emb|CAR16790.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli IAI39]
 gi|238860865|gb|ACR62863.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli BW2952]
 gi|260450151|gb|ACX40573.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|299878183|gb|EFI86394.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 196-1]
 gi|300314143|gb|EFJ63927.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 175-1]
 gi|300449540|gb|EFK13160.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 116-1]
 gi|300457127|gb|EFK20620.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 21-1]
 gi|301075799|gb|EFK90605.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 146-1]
 gi|309700920|emb|CBJ00217.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli ETEC H10407]
 gi|310337414|gb|EFQ02552.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli 1827-70]
 gi|315135350|dbj|BAJ42509.1| DNA-binding transcriptional activator KdpE [Escherichia coli DH1]
 gi|315616391|gb|EFU97008.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli 3431]
 gi|323938337|gb|EGB34592.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323972049|gb|EGB67265.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|331037989|gb|EGI10209.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli H736]
          Length = 225

 Score =  132 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|317493397|ref|ZP_07951818.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918340|gb|EFV39678.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           SLLL+D    +R +    F   GF V       +  +  +++ + + +++D  M G+  F
Sbjct: 6   SLLLIDDDAEIRSLLTEYFTRAGFSVIALPDGEKLMQTLQQQSV-DLIILDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +   + V +  L    D    + G   GA+ +L KPF+   L   ++ L +  +
Sbjct: 65  TLC-RMVRNTSSVPIIMLTAASDETDKVIGLELGADDYLAKPFSARELLARVKALLRRNQ 123

Query: 123 SKD 125
              
Sbjct: 124 IAQ 126


>gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + + + +  GF V EA                + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV--NDSVDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++          L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GM-ETLKKLREKWQTPALMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDENQ 128
             +  +++
Sbjct: 118 TGNHTQSK 125


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + ++        G+ V +A       E        + +++D  +  +   
Sbjct: 4   KILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKY-DLVLLDIMLPQLSGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +R++   +D+ V  L         ++G  +GA+ ++ KPF  E L   +R   + +
Sbjct: 63  -EVLRRLRRESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKR 120


>gi|303246260|ref|ZP_07332540.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio fructosovorans JJ]
 gi|302492323|gb|EFL52195.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio fructosovorans JJ]
          Length = 366

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD +     + R +     F V  A +  EA E       P+ +++D  M G+  
Sbjct: 5   KSVLVVDDTPDNIFILREILAPE-FTVLAARNGPEALEVATNVPRPDCILLDVLMPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ M +   + V ++    D      G   GA  F+ KP     +   +R   +
Sbjct: 64  YEVCRRLKAMDITRRIPVLFVTTLDDVRDETRGLELGAVDFITKPVRPPVVLARVRTHLR 123

Query: 120 MQKSKD 125
           ++  +D
Sbjct: 124 LKAYQD 129


>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   G + +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|254283593|ref|ZP_04958561.1| adenylate/guanylate cyclase [gamma proteobacterium NOR51-B]
 gi|219679796|gb|EED36145.1| adenylate/guanylate cyclase [gamma proteobacterium NOR51-B]
          Length = 479

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L VD     R++   L +  G  V  A S  EA E     +  + +++D  M G    E
Sbjct: 127 ILAVDDMPENRELISRLLHRSGHTVITAESGEEALELLGT-MAVDVVLLDLMMPGIGGAE 185

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  P      V  +    D +++I   +AGA+ +LLKPFN   L+  +    + +
Sbjct: 186 VLRRLKDDPELRATPVVMISGRQDMQQIIGCIQAGADDYLLKPFNPVVLQARISAGIERK 245

Query: 122 KSKDENQF 129
           +  D  Q 
Sbjct: 246 RWHDREQQ 253


>gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +         G++V    S  EA E  + E   + +++D  + G+  F 
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEK-FDLIILDVMLPGIGGFE 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R   L + V V  L         I G  AGA+ +L+KPFN +     +  + + 
Sbjct: 67  VCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRR 123


>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +  + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
 gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G+ V  A     A  F       + +V+D  +  +   
Sbjct: 2   RILVVEDEPTLAAQLADALRGAGYTVDVAGDGESA-RFLGDVETFDAVVLDLGLPVMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      ++ V  L    ++ + +AG  AGA+ +L KPF+ E L   +R L +   
Sbjct: 61  TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120

Query: 123 SKDENQ 128
           +    Q
Sbjct: 121 AHASAQ 126


>gi|289628311|ref|ZP_06461265.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647904|ref|ZP_06479247.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488175|ref|ZP_07006212.1| Copper-sensing two-component system response regulator CpxR
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157454|gb|EFH98537.1| Copper-sensing two-component system response regulator CpxR
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330869383|gb|EGH04092.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLVD    + ++         F V    S  E  E        + +V+D  M  + 
Sbjct: 1   MTRVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEG-EIEALSGRHDIVVLDIMMPRMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R     + V V  L    D    I+G   GA+ ++ KP +   L   +R + 
Sbjct: 60  GIEVLRRIRAQ---SQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIM 116

Query: 119 QMQKS 123
           +  ++
Sbjct: 117 RRVRA 121


>gi|302551257|ref|ZP_07303599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468875|gb|EFL31968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 272

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 9/126 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LL++    + +        FG  V    +  +      +    + +++D  +  +   
Sbjct: 4   RVLLIEDDETIAEPLTEGLGHFGLTVDHVATGTDGL----RGPYNDVVLLDLGLPDMDGI 59

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ+   +DV +  L    +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 60  DVCRGIRQV---SDVPIVILSARGEEADRVLGLELGADDYLAKPFSVRELVARVRAVTRR 116

Query: 121 QKSKDE 126
            +   +
Sbjct: 117 TQRGRQ 122


>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +           G+    A     A +   + L P+ +V+D  + G+ 
Sbjct: 1   MSTILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAAR-LQPDAVVLDVMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R       V V  L    D   M+ G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 60  GLEVCRRIQADRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRR 118

Query: 121 QKSKDE 126
                +
Sbjct: 119 VDRAAQ 124


>gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+   +A S  EA            +++D  M  + 
Sbjct: 19  MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  +  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 78  GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 136

Query: 121 QKSKDEN 127
            +++  N
Sbjct: 137 SQNEVTN 143


>gi|188584893|ref|YP_001916438.1| response regulator receiver protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349580|gb|ACB83850.1| response regulator receiver protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 126

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +    +      GF V  AT+  +     ++E  P+ +++D  +  + 
Sbjct: 1   MPKILVIEDEKNIVIPLKLYLQKQGFEVLVATNGVDGVSLAQEEK-PDVILLDIILPKMN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +++      + + ++  + +  ++      G + +L+KPF    L   +++  
Sbjct: 60  GYLVCEALKENEETKHIPIIFITAKSNETEIEKALAMGGDDYLIKPFTHTKLYEVIKKYL 119

Query: 119 QMQKSKD 125
           + + S +
Sbjct: 120 KEENSHE 126


>gi|91774108|ref|YP_566800.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
 gi|91713123|gb|ABE53050.1| PhoP-containing response regulator receiver [Methanococcoides
           burtonii DSM 6242]
          Length = 356

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++ R       +    A +  +A +   +E LP+ +++D  M  +   
Sbjct: 227 KILVVDDEPDIPELIRLSLATEPYDFIVAYNGEDAVKKSIEE-LPDLILLDIMMPDMDGY 285

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +++ P   D+ V  +  + + E  + G   G + ++ KPF++  +   ++ + + 
Sbjct: 286 EVVERLKEDPYARDIAVIMVSAKTEIEDKLKGMELGIDDYISKPFDKREINARIKMVMKR 345


>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|260060660|ref|YP_003193740.1| two-component system sensor histidine kinase/response regulator
           [Robiginitalea biformata HTCC2501]
 gi|88784790|gb|EAR15959.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Robiginitalea biformata
           HTCC2501]
          Length = 969

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLV+ +  +R+    +  +  + V  A    +  E    E +P+ +V D  M      E
Sbjct: 722 ILLVEDNADLRRFVGEVLQEK-YRVLYAEDGFQG-ERMAIEHIPDVVVSDVMMPRKDGYE 779

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++     + + +  L      E  + G   GA ++L KPF    L   +R L   Q
Sbjct: 780 LCHALKTNTKTSHIPIILLTARAGQENKMEGLFQGAEAYLTKPFEARELLVRIRNLMGRQ 839

Query: 122 KS 123
           K+
Sbjct: 840 KA 841


>gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1034

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LL + + +   V     +   F V  A +  EA E   +E  P  ++ID  M  +   
Sbjct: 901  TILLAEDNEMTIDVVSDYLHYLNFEVVVARNGYEAIERA-QEYRPALILIDIQMPVMDGL 959

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              I  +R +P      +  L              AGAN +L KP +   L   ++++ + 
Sbjct: 960  HAIRELRALPAFRTTPIIALTALAMQGDRERCLAAGANEYLSKPISLHGLVEVIQQILRG 1019

Query: 121  QK 122
            QK
Sbjct: 1020 QK 1021


>gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +R++ R+     GF V+ A    E  E   +    + +++D  +     
Sbjct: 3   KKILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQY-DVIIVDWMLPYHDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +    G    +  L  + +   ++    AG + +L KPF+   L   +    +  
Sbjct: 62  IELVAKFRDRGLKAILIMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHLRRV 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 DMNHELRRIE 131


>gi|302877990|ref|YP_003846554.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Gallionella capsiferriformans ES-2]
 gi|302580779|gb|ADL54790.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Gallionella capsiferriformans ES-2]
          Length = 379

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L++D S  +  +   L     + +  A S  +      +E +P+ +++D  M G+   
Sbjct: 10  TVLVIDDSPEILLIINELLKK-DYRIKAANSGEKGLRLAREEPIPDLILLDIMMPGINGH 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V +L    +      G + GA  ++ KP +   LR  ++    M
Sbjct: 69  EVCRTLKADRSTRDIPVIFLTAMHNECDEEQGLKLGAADYIGKPISGPILRARVKTHLAM 128

Query: 121 QKSKD 125
           ++S D
Sbjct: 129 KQSAD 133


>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
 gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    ++ + R+   + G+ +  A+   EA          + +++D  +  + 
Sbjct: 1   MQHILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALF-SSAHFDLILLDIMLPKID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    + V +  L      E+ I G     + ++ KPF+   L   +  + 
Sbjct: 60  GFTVCELIRKQ---SQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVL 116

Query: 119 QMQKSKDENQ 128
           +      E +
Sbjct: 117 RRSSMIPEQE 126


>gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 378

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   +  ++   +    G+ + +A S   A E    E  P+ +++D  M G+  
Sbjct: 13  RKILVVDDDRLNIRILSGILKTQGYALADADSGERALELYP-EFRPDLVLLDVVMPGLNG 71

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++         + ++  + + + ++ G  AG   +L KPF  + +   ++   +
Sbjct: 72  FETCRKLKDTYGDACAPIVFITAKNESDDVVEGFSAGGVDYLPKPFQAKEVLVRIQTHLR 131

Query: 120 MQKSKDENQFL 130
            Q   ++ + L
Sbjct: 132 NQLLTEQQKSL 142


>gi|197119652|ref|YP_002140079.1| sigma-54-dependent transcriptional response regulator AtoC
           [Geobacter bemidjiensis Bem]
 gi|197089012|gb|ACH40283.1| sigma-54-dependent transcriptional response regulator AtoC
           [Geobacter bemidjiensis Bem]
          Length = 458

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R     +  D G+    A    EA   C +E LP  +++D  M  +   
Sbjct: 4   TILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARE-LPGLVLLDIWMPKMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  +      E  +   + GA  F+ KP + E +   +     M +
Sbjct: 63  ETLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALAMNR 122

Query: 123 SKDENQFL 130
            K+EN  L
Sbjct: 123 LKEENAAL 130


>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+         R   ++ G++V  A      +   E E   + L++D  + G   +
Sbjct: 2   RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDY-DLLILDVMLPGQDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +  +       V +L    D    + G   GA+ +L KPF+   L   +R + +  K
Sbjct: 61  T-LLHNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119

Query: 123 SKDENQF 129
            ++    
Sbjct: 120 PRETMSL 126


>gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    +  V     +  G+         +A      +  P+ +++D  +   G L+
Sbjct: 10  VLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQ-QPDLVLLDLMLPNRGGLD 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  +   V+    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 69  ICRDLRNESA---VPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRH 125

Query: 122 K 122
           +
Sbjct: 126 R 126


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V +      G+    A +  EA E        + +++D  +  +   
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF-GNGNWDLILLDVMLPNISGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L         ++G   GA+ ++ KPF  E L   +R   ++  
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 123 SKDENQ 128
              E +
Sbjct: 123 VVKEEE 128


>gi|332829408|gb|EGK02062.1| hypothetical protein HMPREF9455_00184 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 2/134 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    +  + +       F V  A +  E  E   K L P+ +V D  M  +
Sbjct: 1   MKIKVLLVEDEPALAMIIKDALEKREFTVDCAANGNEGLEMFHK-LHPDIIVADIMMPKL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F            + + +L  +   + ++ G   G N +L KPF  E L   ++ L  
Sbjct: 60  DGFSMTQLIRQTDKHIPILFLSAKSKTDDVVQGFEIGGNDYLKKPFGMEELIVRIKSLLN 119

Query: 120 MQKSKDENQFLDAI 133
             +++   + +  I
Sbjct: 120 RVQNEVRKEKIYQI 133


>gi|323701988|ref|ZP_08113657.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum nigrificans DSM 574]
 gi|323533074|gb|EGB22944.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum nigrificans DSM 574]
          Length = 448

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +        +  G+ V   T   +      +E+ P+ +V+D  M  +   
Sbjct: 4   RVLVIDDEERMCWALERALSHEGYQVITTTRGVQGVSLA-QEMDPSIVVLDLKMPDLDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      ++ V  +      E  I   + GA  ++ KPF  E L+  +++   + +
Sbjct: 63  EVLRKIKDFNPNIPVIMITAHGTIETAIEAMKIGATDYITKPFKLEELKVVIKQALHVNQ 122

Query: 123 SKDENQF 129
            +++ +F
Sbjct: 123 LENQVEF 129


>gi|312112485|ref|YP_003990801.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217586|gb|ADP76190.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +    +     + + V    S  EA          + +++D  MEG+  
Sbjct: 4   KKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALRII--NNNFDLIILDIMMEGIDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + +R      D  + ++  +   E  I     G + ++ KPF+ + L+  +    +
Sbjct: 62  MELCSMIRDR---VDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLR 118

Query: 120 MQKSKDENQF 129
            ++    N+ 
Sbjct: 119 REERIRSNER 128


>gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 1   MDSL---LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M S+   LL++    +R       +  G  V  A +  +  E   +E  P+ +V+D  + 
Sbjct: 1   MTSVPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+  F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R
Sbjct: 60  GIDGFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIR 116

Query: 116 ELPQMQKSKDEN 127
            + +  + +  +
Sbjct: 117 AVLRRGERESTD 128


>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
           transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         +    + GF+V  A    +       E   + +++D  + G+  +
Sbjct: 2   KILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAY-DLVILDVMLPGIDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G D+ V +L      +  + G   GA+ +L+KPF    L   +R L +   
Sbjct: 61  SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120

Query: 123 SKDENQFLDA 132
              E++FL A
Sbjct: 121 KATESEFLRA 130


>gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
 gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ +V+    +R++ R+   + G+ V E        +  EK  +P+ +++D  + G  
Sbjct: 1   MATIYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKN-IPSLILLDIMLPGED 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R      DV V  +  +      + G   GA+ ++ KPF    L   ++ L 
Sbjct: 60  GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119

Query: 119 QMQKSKDENQFL 130
           +     +E+  L
Sbjct: 120 RRTSRINEDSQL 131


>gi|219854708|ref|YP_002471830.1| hypothetical protein CKR_1365 [Clostridium kluyveri NBRC 12016]
 gi|219568432|dbj|BAH06416.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSV-CEAREFCEKELLPNYLVIDESMEGVLEF 62
           +L+V+    +RK+        G+    A +      E   ++  P+ +++D  +  +   
Sbjct: 2   ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQ--PDIIILDLGLPDMDGV 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   ++V +  +    +    I    AGA+ +L KPF+ E L   +R   +  +
Sbjct: 60  -EIIKKVRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIR 118


>gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE 61
            +LLV+    + +  +   N   ++V       EA    + +    N  +ID  + G+  
Sbjct: 2   RILLVEDEPDLGEALKKALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLPGMSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       + V  L  +   E  + G  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  IELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRALGRRS 121

Query: 122 KSKDENQF 129
                 Q 
Sbjct: 122 PQLVPQQL 129


>gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 250

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+V+    +R+  +     +G+ V  A       E        + L++D  +     +
Sbjct: 20  SVLVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAH-DLLILDVMLPELDGI 78

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V  +    D   ++AG  AGA+ +++KP +   +   +R L + 
Sbjct: 79  GLCRRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRR 135


>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +    V++  S  EA   C      +  ++D  +  +   
Sbjct: 4   KILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEAL-VCIGSTDFDLAILDIMLPDISGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICQSIRSKEYTY--PVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120

Query: 121 QK 122
            K
Sbjct: 121 YK 122


>gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
 gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+         R    + G+ V  A+          +E   + +V+D  + G+  F
Sbjct: 2   KLLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLA-REFDYDVIVLDVMLPGMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++       V  L      +  + G   GA+ +L+KPF+   L   ++ L +  +
Sbjct: 61  -NVLRELRRSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGR 119

Query: 123 SKDENQF 129
            ++  + 
Sbjct: 120 QQEPTEL 126


>gi|152988681|ref|YP_001346380.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150963839|gb|ABR85864.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 246

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   VLIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +       V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
 gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 1616

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 3/114 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LLV+ + + ++V   L  D GF V  A     A     +    + +++D  M  +   
Sbjct: 1280 RILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAY-DMVLMDMQMPVMDGV 1338

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                 +R++     + +  +              AG N F+ KP + + L  A+
Sbjct: 1339 AATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWAAL 1392



 Score = 91.8 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEARE----FCEKELLPNYLVIDESME 57
              +L+VD +   R V   L     F V    S  EA +              +++D  M 
Sbjct: 1130 RRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMP 1189

Query: 58   GVLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
            G+       H+  + L     +  +      E +     AG    L+KP +   L   + 
Sbjct: 1190 GMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIM 1249

Query: 116  ELP 118
             L 
Sbjct: 1250 RLF 1252


>gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 246

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             L+VD    + +V         F V  A S  +A     +E+ P+ +++D ++ G+   
Sbjct: 13  RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQA-REIDPDVVILDLALPGIDGV 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   +D +V  L         I G   GA+ ++ KPF+   L   +R + +  +
Sbjct: 72  EVC-RQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPR 130


>gi|107103492|ref|ZP_01367410.1| hypothetical protein PaerPA_01004562 [Pseudomonas aeruginosa PACS2]
          Length = 777

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA E   +E  P+ +++D  M  +  F
Sbjct: 651 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 709

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R +P   ++ V  L              AG + ++ KP   E L+  + +  
Sbjct: 710 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 767


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    ++++ +       + V  A+   E      K+   + +++D  M  
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQS-FDLILLDVMMPN 59

Query: 59  VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R     ++V +  L    + E  + G   G + ++ KPF+   L   +  
Sbjct: 60  LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 116

Query: 117 LPQMQKSKDENQFL 130
           + +    K+ N  L
Sbjct: 117 VLRRSYDKNVNNHL 130


>gi|227540417|ref|ZP_03970466.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239741|gb|EEI89756.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 467

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L++D    +R   R +     + VF+A +  +  E  +KE   + ++ D  ME + 
Sbjct: 1   MTTILIIDDERAIRSTLREILEYEDYKVFDADNALDGLEILKKEK-IDLVLCDIKMEKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A      L  +V    +      E  +   + GA  FL KP +   +   +R   + 
Sbjct: 60  GLEALTFAQTLKPEVPFIMISGHGTVETAVEATKKGAYDFLSKPLDLNRILITVRNALER 119

Query: 121 QKSKDENQFLD 131
               +E + L 
Sbjct: 120 GSLVEETKVLK 130


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ + +A +     E  EK  + + +++D  +  + 
Sbjct: 1   MIKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEV-DLVLLDIMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +  R   +  G+ V  A            E  P+ +V+D  +  V 
Sbjct: 1   MTKVLVVDDEPQIVRALRINLSARGYQVLTAHDGAA-ALRAAAEGKPDVVVLDLGLPDVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +  +   T V +  L    D    +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  G-TEVIAGLRGWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVRR 118

Query: 121 QKS 123
             +
Sbjct: 119 SAA 121


>gi|281421220|ref|ZP_06252219.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
 gi|281404755|gb|EFB35435.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
          Length = 1377

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LL VD +  +RK  R  F D  + V +  S   A ++ ++  + + +V D  M G+   
Sbjct: 1084 TLLFVDDNEDLRKYIRMTFGDS-YQVVDVESAEAALKYLKEGGVCDIVVSDVMMPGMHGD 1142

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            EF   +++    + + V  L  +   + MI G   GA+ ++ KPF+   L   +  + + 
Sbjct: 1143 EFCRSIKENKETSWLPVILLTAKAGRDFMIEGLGLGADDYIAKPFDTAILASKVASILKN 1202

Query: 121  QKSKDE 126
            ++   +
Sbjct: 1203 RRRLSQ 1208


>gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  +         V  A    EA E   +E   + +V+D S+ G    
Sbjct: 2   RILIVEDQADILRHVKRALERADHEVSVAIDGPEAVEVV-RERRFDLIVLDLSLPGFDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R  P+     V  L    + +  + G  AGA+ +L KPF+ + L   +  L + 
Sbjct: 61  EVMKRISPMDARPRVLMLTARGEIDDRVKGLNAGADDYLTKPFDMKELLARVEALGRR 118


>gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 248

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 2/115 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  +        G    +A    EA     ++L P+ +++D  + G+    
Sbjct: 14  VLVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLF-RQLKPDMVLLDIHLPGMDGL- 71

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +R +       V  +    D    + G R GA+ +++KPF+   +   +R + 
Sbjct: 72  DLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126


>gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 241

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    +  +   +E+LP+ ++ D  M      
Sbjct: 16  RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKA-QEMLPDLVISDVMMPRCDGY 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             +  +R+        V +L  +        G  AG + ++ KPF+ E L
Sbjct: 75  GLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEEL 124


>gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ + + +K+        G+    A++  EA    + E +   ++ D  M  + 
Sbjct: 1   MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEV-QLIITDIMMPMMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R      +V +  +  +   E M  G   GA+ +++KP   + L   ++ L 
Sbjct: 60  GYQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117

Query: 119 QMQKSKDENQFL 130
           +      ++Q +
Sbjct: 118 RRANIVAQHQLI 129


>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    +R++ ++     G+ V  A+   EA      E   +  V+D  M    
Sbjct: 1   MIHILIADDDAHIRELLQYHLQTEGYTVLTASDGEEA-SVLLAEEQVHLAVVDVMMPNKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R      DV V  L  +        G   G + +L KPF    L F ++ L 
Sbjct: 60  GYQLCEEIR---RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALL 116

Query: 119 QMQKSKDENQ 128
           +  +    ++
Sbjct: 117 RRYQMVSADK 126


>gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 238

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R+         G+ V +A +  EA      +     +V+D  +      
Sbjct: 12  RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEALALLAGQGA-ELVVLDIGLPDRDGH 70

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ    ++V V  L +     + +A   AGAN ++ KPF  + L   +R L + 
Sbjct: 71  EVLREIRQ---WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQ 127

Query: 121 QKS 123
             +
Sbjct: 128 AGA 130


>gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1]
 gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1]
          Length = 208

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTY-DLIVLDIMIPGINGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
 gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   S+L+VD    + ++        GF VF A +  EA +  +        ++D  M  
Sbjct: 1   MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSND-IQLTILDIMMPA 59

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R+     ++ V +L  +      + G   GA+ ++ KPF+   L   ++ 
Sbjct: 60  MDGIEVCRRIREQ---YNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKA 116

Query: 117 LPQM 120
             + 
Sbjct: 117 QLRR 120


>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 241

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++LLV+    +           G+ V  A                + ++ID  +     
Sbjct: 17  RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGG-IDLIIIDVMLPRLNG 75

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +R       + V  L         + G   GA  ++ KPF+   L   ++ + +
Sbjct: 76  FELLRILRNERRT--LPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLR 133

Query: 120 M 120
            
Sbjct: 134 R 134


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +         F V       E       E   + +++D  +     +
Sbjct: 2   RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G +  V  L    D E  + G   GA+ +L KPF+   L   +R L + + 
Sbjct: 61  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120

Query: 123 SKDENQF 129
                + 
Sbjct: 121 ESKSTKL 127


>gi|160897316|ref|YP_001562898.1| response regulator receiver protein [Delftia acidovorans SPH-1]
 gi|160362900|gb|ABX34513.1| response regulator receiver protein [Delftia acidovorans SPH-1]
          Length = 123

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+ +    +RK+ R       + V EA +  EA    ++   P+ +++D  M G  
Sbjct: 1   MKKILIAEDQADIRKLLRMTLESSAYEVMEAPTGDEAWALAQRS-QPDVVLLDMMMPGTL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    ++         V  L      +   AG  AGA+ +LLKPF+   L   +  L
Sbjct: 60  DGLEVCCRIKTSYDLRHTRVILLTARGSAQDREAGFNAGADEYLLKPFSPNRLLETLASL 119

Query: 118 PQ 119
            +
Sbjct: 120 YR 121


>gi|70732213|ref|YP_261969.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68346512|gb|AAY94118.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 465

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LL+VD    +  +     +  G  VF A +   A +  E+E   + ++ D  M G+   
Sbjct: 4   NLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQED-IDLVISDWRMPGMDGP 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++Q      + V  +      +  +   R GA  ++ KPF+ + L   + +  Q 
Sbjct: 63  QLLGEIKQR--YPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQF 120

Query: 121 QKSKDENQFLDA 132
           +    +NQ + A
Sbjct: 121 RDILKDNQRMRA 132


>gi|75906290|ref|YP_320586.1| response regulator receiver domain-containing protein [Anabaena
           variabilis ATCC 29413]
 gi|75700015|gb|ABA19691.1| Response regulator receiver domain protein (CheY) [Anabaena
           variabilis ATCC 29413]
          Length = 196

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R +   +     F V +A +        + E +P+ ++ D +M    
Sbjct: 1   MTKILVIEDQEEIRSIIVEMLTAENFYVMDAENGQVGITLLQTE-IPDLIICDIAMPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+ P    +   +L  +     +  G   GA+ +L+KPF R  L  A+    
Sbjct: 60  GYEVVTWSRENPETEAIPFIFLTAKASQNDIRQGIELGADDYLVKPFTRAELLGAITARL 119

Query: 119 QMQK--SKDENQFL 130
           + Q+  ++   Q L
Sbjct: 120 EKQEIINRQTQQRL 133


>gi|88808835|ref|ZP_01124344.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88786777|gb|EAR17935.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 244

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +VD    +R++      D G+ V   + V +  E   +   P+ +V+D  M G     
Sbjct: 10  IWVVDDDPELRQMVGTYLIDQGYDVRSLSDVKQ-LEARLEFQRPDLVVLDLMMPGDDGLT 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A  R    G D+ V  L    +    I G   GA+ +L KPF    L   +  + + + S
Sbjct: 69  ALRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSS 128


>gi|94312809|ref|YP_586018.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93356661|gb|ABF10749.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 237

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + ++++D    +R + +      GF V       +      +    + LV+D  ME    
Sbjct: 5   NRIIVLDDEAELRNMLQRFLTGHGFHVRAVADGKQ-LNRYLQREPYDLLVLDLMMEPEDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G  + +  L  + D    + G   GA+ +L KPF  + L   +R L + Q
Sbjct: 64  LSVCRRLRAEGQTLPILMLTAKGDPADRVIGLDTGADDYLAKPFLPDELVARIRALLRRQ 123

Query: 122 KSKD 125
           K   
Sbjct: 124 KIAA 127


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  LLLVD    + ++        GF  +  A +  E      +E  P+ +++D  +   
Sbjct: 1   MAVLLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLA-REGRPDLVLLDVMLPDL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              E    +R     T V + +L    +    + G   G + ++ KPFN   +   ++  
Sbjct: 60  EGFEVCRRLRS---FTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQ 116

Query: 118 PQMQKSKDEN 127
            + Q+   + 
Sbjct: 117 LRRQQLAGQQ 126


>gi|302546427|ref|ZP_07298769.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302464045|gb|EFL27138.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1432

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD          H+    G  V  A +  E  +   +    + +++D  M  +  
Sbjct: 1250 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLDVLHRNPDVSLVLMDVMMPEMDG 1309

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R  P   D+ +  L  +           +GAN ++ KP + + L   + +L 
Sbjct: 1310 YETIRAIRGTPRLADLPIIALTAKAMPGDREKALESGANGYVPKPVDVDRLMSTVCDLL 1368


>gi|256420693|ref|YP_003121346.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035601|gb|ACU59145.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+  H   KV +      G++V   +   E      +E   +  ++D  M G+  F 
Sbjct: 5   VLLVEDDHFFAKVIKSHLEKAGYLVVHCSDGEEGWNTF-QERPFDICLLDVVMPGMDGFA 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                     ++ + +       +  + G   G + +L+KPFN E L   M    +  + 
Sbjct: 64  LAREIRDRNENIPIIFTTSRYMEQDKLNGFECGGDDYLVKPFNMEELLCRMDVFMKRSRL 123

Query: 124 KDENQFL 130
              ++ +
Sbjct: 124 LQNDKQI 130


>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120


>gi|172035205|ref|YP_001801706.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171696659|gb|ACB49640.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 122

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LL D S   R++   L  D GF V  A    EA E   K L P+ +++D  M    
Sbjct: 1   MPTILLADDSTAQRELIAGLLTDNGFSVTTAMDGAEALEKL-KSLAPDLIILDVVMPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    ++  P    + V     +        G + GA+++++KPF  E L   +++L 
Sbjct: 60  GYQTCRSIKSDPKTEHIPVILCSTKNTQVDSYWGLKQGADAYIIKPFPHEELLGTVKQLL 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|319786347|ref|YP_004145822.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464859|gb|ADV26591.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 238

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 4/129 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+ +  + ++        GF V  A    +       E   + +V+D  +     +E
Sbjct: 11  VLVVEDNRNISEMIGEYLESRGFEVDYAADGLDGYRLA-AENSYDAVVLDLMLPRLDGIE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         V  L      +  + G   GA+ +L KPF  + L   +R L + +
Sbjct: 70  VCRRLRSDAR-KSTPVLMLTARDTLDDKLTGLGHGADDYLTKPFAIQELEARLRALIRRE 128

Query: 122 KSKDENQFL 130
           + +  ++ L
Sbjct: 129 RRQVGSEVL 137


>gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 384

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD   ++           G+ V+ A    +A E  +K +  + +++D  +     L+
Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKK-VRIDAVILDWMLPDIQGLD 224

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++    +  +  +  + +F   + G RAGA+ +++KPFN   L   +    + Q
Sbjct: 225 LCRRLREL---INPVIIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQ 281

Query: 122 KSKDENQFL 130
            S  E + L
Sbjct: 282 TSSPEKEVL 290


>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|307152023|ref|YP_003887407.1| LuxR family two component transcriptional regulator [Cyanothece sp.
           PCC 7822]
 gi|306982251|gb|ADN14132.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7822]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    +R   +      G+ V  A +  EA    E    P+ LV D  M      E
Sbjct: 5   ILIADDDPGIRLAVKDYLELSGYSVVTAKNGQEALSLLET-YHPHLLVSDIKMPRTDGYE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +A VRQ P    + V +L  +    + I G +AG + +L KPF  E L   +R L +  
Sbjct: 64  LVAQVRQRPEFRLLPVVFLTEKSTTHERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123

Query: 122 KSKD-----ENQFLDA 132
           +  +     +N+ L  
Sbjct: 124 QIMESEWRYKNRQLQE 139


>gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
 gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 7424]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    +R   +      G+ V  A +  EA    E    P+ LV D  M      E
Sbjct: 5   ILIADDDPGIRLAVKDFLELSGYSVVTAKNGQEALSLLET-YHPHLLVSDIKMPRTNGYE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +A VRQ P    + V +L  +    + I G +AG + +L KPF  E L   +R L +  
Sbjct: 64  LVAQVRQRPEFRLLPVVFLTEKSTTSERIRGYQAGCDVYLPKPFEMEELGAVIRNLLERS 123

Query: 122 KSKD 125
           +  +
Sbjct: 124 QIIE 127


>gi|74311219|ref|YP_309638.1| DNA-binding transcriptional activator KdpE [Shigella sonnei Ss046]
 gi|73854696|gb|AAZ87403.1| regulator of kdp operon [Shigella sonnei Ss046]
 gi|323163949|gb|EFZ49758.1| KDP operon transcriptional regulatory protein kdpE [Shigella sonnei
           53G]
 gi|333010096|gb|EGK29531.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           flexneri K-272]
 gi|333021048|gb|EGK40305.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           flexneri K-227]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|157160174|ref|YP_001457492.1| DNA-binding transcriptional activator KdpE [Escherichia coli HS]
 gi|331662050|ref|ZP_08362973.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli TA143]
 gi|157065854|gb|ABV05109.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli HS]
 gi|284920479|emb|CBG33541.1| two-component response regulator [Escherichia coli 042]
 gi|331060472|gb|EGI32436.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli TA143]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +  + R      GF V          +   + L P  +V+D  + G+    
Sbjct: 5   VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRR-LAPVAVVLDVGLPGLDGVE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R         V ++    D    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 64  VCRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRR 120


>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHASSEII 128


>gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+   +A S  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  +  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            +++  N
Sbjct: 119 SQNEVTN 125


>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 8   DSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIAH 65
           +    +R          G+ V +     +A     ++  P+ +V+D  + G    +    
Sbjct: 2   EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPII-RQRRPDLVVLDIMLPGKSGFDLCRE 60

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +R         +  L  +      + G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 61  LRAEKNC--TPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRR 113


>gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
 gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +  EA         P+ +++D  +  
Sbjct: 1   MNKTSILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHN-PDIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ ++ KPF+ E L   +R   
Sbjct: 60  MEGV-DVIKKIRTWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIRVTQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|154483201|ref|ZP_02025649.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC
           27560]
 gi|149736009|gb|EDM51895.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC
           27560]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A     A         P+ +++D  +  
Sbjct: 1   MNKSLILVVEDDTSVRNLITTTLKAHEYRYLTAPDGQSAILEASSHN-PDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDGV-EIIKKIRTWSNMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|332535746|ref|ZP_08411492.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034854|gb|EGI71386.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
          Length = 549

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   + R +   +    G+ +  A +  +A    ++E   + +++D  M  + 
Sbjct: 1   MIHVLIVDDQALNRILLSKMLEQEGYKISVAYNGLDALNVLKRE-QIDIVLLDVLMPVMD 59

Query: 61  EFIAHVRQMPLGTDV--FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F A  +     ++V   + ++    D          G + F+ KPF +  L   ++   
Sbjct: 60  GFEAAEKIKQQYSEVYLPIIFITSLDDQASFERCLEVGGDDFIHKPFEKVILHAKIKAHS 119

Query: 119 QMQKSKD----ENQFLD 131
           + ++       + + L+
Sbjct: 120 RTRELSKKSNQQKKLLE 136


>gi|302339669|ref|YP_003804875.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
 gi|301636854|gb|ADK82281.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 245

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   I       + +  GF +  A    EA E   K   P+ +++D  M  +  
Sbjct: 5   TKILIVDDEPINLDFFDVMLSKLGFEIGRAEDGEEALEQI-KSFNPDLIILDNVMPKMSG 63

Query: 62  --FIAHVRQMP---LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                 V+Q P      D+ +       D +  I G   G   ++ KPFN   +   +R 
Sbjct: 64  WQVTRIVKQDPLFEKYHDIPIIMFSAMDDVKDKIEGFELGVEDYITKPFNFSEVLARIRA 123

Query: 117 LPQMQKSKDE 126
           + + ++   +
Sbjct: 124 VLRGKELYQQ 133


>gi|255280825|ref|ZP_05345380.1| KDP operon transcriptional regulatory protein KdpE [Bryantella
           formatexigens DSM 14469]
 gi|255268762|gb|EET61967.1| KDP operon transcriptional regulatory protein KdpE [Bryantella
           formatexigens DSM 14469]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKPLILVVEDDAPVRNLITTTLKTNDYRYLAAVNGATAILEASSHN-PDIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      +  +   +++ +  +    +    I    AGA+ +L KPF+ E L   +R + 
Sbjct: 60  MDGV-EVIENIRSWSNLPIIVISARSEDTDKIKALDAGADDYLTKPFSVEELLARLR-VT 117

Query: 119 QMQKSKDENQFLDA 132
           Q + S    + L A
Sbjct: 118 QRRLSFMSAEMLSA 131


>gi|257059245|ref|YP_003137133.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
 gi|256589411|gb|ACV00298.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8802]
          Length = 715

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD      ++ R      G+ V    +   A    +  +  + +++D  +      E
Sbjct: 9   LLIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVT-DLILLDIKLPDYDGYE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V +L    +    + G   G   ++ KPF  E +   +     +Q
Sbjct: 68  ICRRLKADEQTAHIPVIFLSALNETFDKVQGFAVGGADYITKPFQIEEVLARVATHLSIQ 127

Query: 122 KSKDENQ 128
           + +   Q
Sbjct: 128 RLQTSLQ 134


>gi|254410981|ref|ZP_05024759.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182336|gb|EDX77322.1| hypothetical protein MC7420_459 [Microcoleus chthonoplastes PCC
           7420]
          Length = 127

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++L+V+     + +   L    G  V  A    EA E   ++  PN +++D  +  + 
Sbjct: 1   MSTVLVVEDDLTQQHLLSKLLERVGLTVIVAGDGVEALEKI-QQFHPNLVILDIVLPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   ++ V     + +      G + GA+++L KP + + +   +++L 
Sbjct: 60  GYEVCRRLKSEPETENIPVLMCSAKKEDFDRYWGMKQGADAYLAKPCHPQEIVETVKKLL 119

Query: 119 QMQKSKD 125
           +      
Sbjct: 120 KSHHQAA 126


>gi|218781281|ref|YP_002432599.1| response regulator receiver protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762665|gb|ACL05131.1| Protein with response regulator receiver domain [Desulfatibacillum
           alkenivorans AK-01]
          Length = 208

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ +     R     +   +G+    A +  EA +   ++   +  ++D  M  +   
Sbjct: 2   NILIAEDDATSRHFLEAILTQWGYETTTAKNGAEAWQIL-QDKKFSLFLLDWMMPEMDGL 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +  G + ++  L    D + +++G  AGA+ ++ KPFNR  L+  ++     
Sbjct: 61  ELCQKIRSLCEGDN-YIILLTARKDPKDIVSGLEAGADDYICKPFNRLELQARIKA---G 116

Query: 121 QKSKDENQFLDA 132
           ++  D  + L A
Sbjct: 117 RRVLDLQRALAA 128


>gi|154500840|ref|ZP_02038878.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC
           29799]
 gi|150270340|gb|EDM97666.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A         P  +++D  +  
Sbjct: 1   MNKPLILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVMEASSHN-PEIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      + ++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDGV-EVIHKVRSWSNMPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRV-- 116

Query: 119 QMQKSKDENQFLDAI 133
                    + L A+
Sbjct: 117 -------TQRRLAAL 124


>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ +       F V    S     E   KE     +++D  +  + 
Sbjct: 1   MKKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAA-KEKNYELIILDLMLPEID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R++    +  +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRKI---KNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|293408805|ref|ZP_06652644.1| conserved hypothetical protein [Escherichia coli B354]
 gi|301025171|ref|ZP_07188744.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 69-1]
 gi|291471983|gb|EFF14466.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300396171|gb|EFJ79709.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 69-1]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1044

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 4/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD     R + + +    G+ V EA S  E  E   ++  P+ +++D  +     
Sbjct: 26  RSILIVDDEPEQRIIIKKILTSAGYRVLEAESGVECTELIRRQ-QPDLVLLDVKLGDESG 84

Query: 60  LEFIAHVRQMPLGTDVFVYYLLM-EVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           L+    ++      D  + +L   +   ++   G RAGA+ +++KP N+E     +  L 
Sbjct: 85  LDICRQIKTDSDIADTHIMFLSGVKTSPQEQARGLRAGADGYIVKPVNKEEFLARIEALM 144

Query: 119 QMQKSKDENQ 128
           ++  +++  +
Sbjct: 145 RVVHTEERLK 154



 Score = 79.5 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL +  ++ +   + +    G  V  A +  EA +  +++   + +++D  M G+    
Sbjct: 865 ILLAEDDNLNQLFMKKMLEKQGHNVVLANNGQEAVDLFQEQN-FDCILMDIQMPGMTGVE 923

Query: 63  -IAHVRQMPLG----TDVFV 77
               +R M  G    ++  V
Sbjct: 924 ATQRIRSMEHGAWGPSETPV 943



 Score = 58.7 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 6/42 (14%), Positives = 12/42 (28%)

Query: 69   MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
                  + +  +              AG + ++ KP N E  
Sbjct: 991  QSPNPRIPIIAVTAHTQPGDRERFLEAGMDDYIGKPVNHEDF 1032


>gi|218245994|ref|YP_002371365.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|257059045|ref|YP_003136933.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
 gi|218166472|gb|ACK65209.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8801]
 gi|256589211|gb|ACV00098.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 8802]
          Length = 308

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+VD      ++   + +  G+    A    +A E   K + P+ +++D  M     LE
Sbjct: 11  ILVVDDISKNVQLLIEILDTVGYATTFAIGGKQALERV-KSVKPDLILLDLMMPEINGLE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      ++ + +L    D E +I     GA  ++ KPF    L   ++   +++
Sbjct: 70  VCKILKSDEATANIPILFLTASNDKEHLIKAFEQGAVDYVTKPFKVPELLARVKTHVELK 129

Query: 122 KSKDENQ 128
           + + + Q
Sbjct: 130 QVQKQLQ 136


>gi|159028166|emb|CAO89773.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------LLPNYLVIDE 54
             LLL+D    +  + +      G+ V  A +  EA    E+         +P+ ++ D 
Sbjct: 9   KQLLLIDDDPNLILLVKDYLEFRGYRVTTAENGTEALAILERGANAAKAREMPDMIICDL 68

Query: 55  SMEGVLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            M  +    F+  +R+    + + V +L  +   +  + G  AGA+ +++KPF  E L  
Sbjct: 69  MMPEMDGYAFLETIRRDIRFSGLPVIFLSPKGQSQDKVTGLTAGADFYMVKPFEPEELVA 128

Query: 113 AMRELPQM 120
            +    + 
Sbjct: 129 LVESSLKQ 136


>gi|160891307|ref|ZP_02072310.1| hypothetical protein BACUNI_03756 [Bacteroides uniformis ATCC 8492]
 gi|156859528|gb|EDO52959.1| hypothetical protein BACUNI_03756 [Bacteroides uniformis ATCC 8492]
          Length = 653

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 4/124 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           LL+V+ +  +       F+D  F V  A +    +E   KE +P+ +V D  M  +    
Sbjct: 397 LLVVEDNPDICDYIAESFSDH-FEVKTAANGKLGKESALKE-IPDIIVSDIMMPVMDGNE 454

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++    + + +  L  +        G + GA+S+L KPF+   L   +  L Q +
Sbjct: 455 MCRELKKDVRTSHIPIILLTAKDSLRDKEEGYQVGADSYLTKPFSASLLHSRIENLLQSR 514

Query: 122 KSKD 125
           ++  
Sbjct: 515 RNLA 518


>gi|149278518|ref|ZP_01884655.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Pedobacter sp. BAL39]
 gi|149230888|gb|EDM36270.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one-component system') [Pedobacter sp. BAL39]
          Length = 253

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 4/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++ +  VR+  +       + + EA    E  +    E LP+ ++ D  M  +  
Sbjct: 4   RKILVIEDNDEVREFIKMCLEGE-YAIMEARDGKEGWQTA-AEHLPDLIISDIMMPEMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   VRQ    + + V  L  +V  E+ + G  +GA+ +L KP+N + L+  +  L +
Sbjct: 62  NEFCKLVRQDERTSHIPVIMLTAKVALEQQLEGLESGADIYLTKPYNIQLLKSYISNLLR 121

Query: 120 MQKSKDE 126
            +++  +
Sbjct: 122 SKETLRQ 128


>gi|254236867|ref|ZP_04930190.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719]
 gi|313109414|ref|ZP_07795374.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016]
 gi|126168798|gb|EAZ54309.1| hypothetical protein PACG_02887 [Pseudomonas aeruginosa C3719]
 gi|310881876|gb|EFQ40470.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa 39016]
          Length = 795

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA E   +E  P+ +++D  M  +  F
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R +P   ++ V  L              AG + ++ KP   E L+  + +  
Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+   ++ +         G+ V  A     A   C +E  P+ +V+D  + G   
Sbjct: 5   RRVLVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVS-CFEETSPDLVVLDVMLPGYDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    ++ +     V V  L   VD   ++ G   GA+ +L KPF    L   +  L +
Sbjct: 64  LEVCRRIQAV---RPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLR 120

Query: 120 MQKSKDEN 127
             +   E 
Sbjct: 121 RVERAAEL 128


>gi|302384082|ref|YP_003819905.1| Fis family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194710|gb|ADL02282.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Brevundimonas subvibrioides ATCC 15264]
          Length = 481

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 55/130 (42%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD     R++ + + +  G++V  A S  EA +   K    + +++D  M G+  
Sbjct: 3   KTVLVVDDDPTQRRLVQAVLDREGYVVVHAESGGEAIDRLTKGGGADVVLLDLVMPGMSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A       G    V  L      E ++   +AGA  F +KP + E +   +R   Q+ 
Sbjct: 63  MEALAEIRTAGVTTPVIVLTANGGIETVVKAMQAGAQDFFIKPASPERILVGIRNALQLT 122

Query: 122 KSKDENQFLD 131
           +   E   L 
Sbjct: 123 QLTAEVGRLK 132


>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+++ +  + +    +  D  F V  A +  +      + +  + +++D  M G+  F
Sbjct: 7   RLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIY-DAILLDVMMPGMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 125 SLTTQQTI 132


>gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + 
Sbjct: 61  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118


>gi|15599169|ref|NP_252663.1| Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1]
 gi|9950164|gb|AAG07361.1|AE004815_5 Lost Adherence Sensor, LadS [Pseudomonas aeruginosa PAO1]
          Length = 795

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA E   +E  P+ +++D  M  +  F
Sbjct: 669 TVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARE-RPDGVLLDCQMPVMDGF 727

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                +R +P   ++ V  L              AG + ++ KP   E L+  + +  
Sbjct: 728 ATCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWL 785


>gi|118579769|ref|YP_901019.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118502479|gb|ABK98961.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 319

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD      +    +F      VF ATS  +  E C+    P+ +++D  M  +   
Sbjct: 22  RLLIVDDEPTNIQSLYEIFRS-DHEVFIATSALQGLEMCDTNP-PDLIMLDIVMPSMNGL 79

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++    + E+   G  AGA  F++KPFN   +R  ++    M
Sbjct: 80  EMCRQLKSDQRTRDIPVIFVTAYGNPEEETRGLEAGAVDFIMKPFNSAVVRARVQTHLTM 139

Query: 121 QKSKDENQFLDAI 133
           +   D  + +  I
Sbjct: 140 KAQADLLRSMAFI 152


>gi|325279188|ref|YP_004251730.1| response regulator receiver sensor signal transduction histidine
           kinase [Odoribacter splanchnicus DSM 20712]
 gi|324310997|gb|ADY31550.1| response regulator receiver sensor signal transduction histidine
           kinase [Odoribacter splanchnicus DSM 20712]
          Length = 374

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD       + + L    G+ +  A +  EA E    E  P+ +++D  M G+  F
Sbjct: 9   KLLVVDDVQTNVLLLKALLGKEGYGILVANNGQEALEVIRNEN-PDLILLDVMMPGMDGF 67

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
                ++      ++ + +L    D + ++ G + G   F+ KPF +E L   ++     
Sbjct: 68  EVAERLKSEEFRCEIPIIFLTALDDTQSIVNGFKLGVGDFISKPFRKEELMVRIKHQLSL 127

Query: 119 --QMQKSKDENQFL 130
               +  +++N+ L
Sbjct: 128 VAARRIIEEKNEEL 141


>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L V+   ++R+  +      GF V       +  E       P+  ++D  + G+   
Sbjct: 12  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAG-APDIALLDVMVPGMDGV 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + + 
Sbjct: 71  SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127


>gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
 gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 2   RILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQY-DLLILDVMLPDIDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 118 QQYLQENEL 126


>gi|319764499|ref|YP_004128436.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826715|ref|YP_004390018.1| response regulator receiver protein [Alicycliphilus denitrificans
           K601]
 gi|317119060|gb|ADV01549.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312087|gb|AEB86502.1| response regulator receiver protein [Alicycliphilus denitrificans
           K601]
          Length = 120

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L VD S  +RK+        G+ V EA    +A E  E     + ++ D++M    
Sbjct: 1   MQSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHD-IDLVLADQNMPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R  P      +  L  E   +   AG  AGA  +L+KPF+   L   ++++ 
Sbjct: 60  GIGLTRKLRAHPRFKSTPILILTTESSDQMKQAGRAAGATGWLVKPFDPTRLVEVIQKVI 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 246

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++LL++    + +         GF V  A    + +        P+ +++D  +     L
Sbjct: 7   TVLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAK-PDVVLLDIMLPKLSGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+  +   V +  L  +      + G + GA+ +++KPF+ + L   ++ + + 
Sbjct: 66  EVCELIRRESV---VPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRR 122

Query: 121 QKS 123
           ++ 
Sbjct: 123 RQL 125


>gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 222

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 1   MNRILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           D+ V  +  + DFE    G + GA+ ++ KP +   +   +  L + 
Sbjct: 60  GYDLVGSLRNARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119

Query: 121 QK 122
            K
Sbjct: 120 SK 121


>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+   I+R++ +  F    ++VFEA    EA    E+E + + +++D  +  +  
Sbjct: 3   KIILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEV-DLVILDIMLPELDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+    ++V +  L   VD +  + G   GA+ ++ KP++   L    + L +
Sbjct: 62  WSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLE 118

Query: 120 MQKSKDEN 127
            +K   + 
Sbjct: 119 SRKVTKQL 126


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+    A           +E+ P+ +++D  +  +    
Sbjct: 16  VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKF-REVNPDLVILDLMLPVLDGLE 74

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++  +  L  +   +  + G  +GA+ +L+KPF+ E L   +R   + 
Sbjct: 75  VA-RRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 130


>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
 gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
          Length = 242

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+    A     A +    +L P+ +++D  +  +  
Sbjct: 13  RTVLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAA-AQLRPDLVIMDIMLPVMDG 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             A  R +     V V  L    D    + G  AGA+ ++ KPF+   L    + L + 
Sbjct: 72  LEATKRIVADRP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129


>gi|224535197|ref|ZP_03675736.1| hypothetical protein BACCELL_00058 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224523188|gb|EEF92293.1| hypothetical protein BACCELL_00058 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1310

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            ++LLV+ +  + K       +  F +  AT   EA +    E LP  ++ D  M G+   
Sbjct: 1059 TILLVEDNEQILKYLAGKLAEH-FNIVTATHGEEALKLV-GEYLPEIVISDIMMPGMDGL 1116

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                H+++  L  D+FV  L  +   E  + G + GA+ ++ KPF+ E L   +  +   
Sbjct: 1117 TLCRHIKENSLYADIFVILLTAKTSSEDELRGYKEGADIYIKKPFDTEALINQIMNILNT 1176

Query: 121  QKSKDEN 127
            ++ + E 
Sbjct: 1177 RQKRKEQ 1183


>gi|186475955|ref|YP_001857425.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192414|gb|ACC70379.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 248

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +R++        G     A+   + R     E  P+ +V+D  + G   L+
Sbjct: 7   VLIVDDDRDIRELVGTYLTRNGVRATLASGGRQMRAALAAE-RPDLIVLDLMLPGESGLD 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V +  L    +    + G   GA+ +L KPF    L   +R + +  
Sbjct: 66  LCRELRAGE-FQTVPILMLTALSEETDRVVGLEMGADDYLAKPFAVRELLARIRAILRRS 124

Query: 122 KS 123
           + 
Sbjct: 125 RM 126


>gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++      + G+   +A +  EA            L++D  M  V 
Sbjct: 1   MK-ILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTINDIELLILDIMMPEVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+ +   + + +  L  +      I G  AGA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-QVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSK 124
              +
Sbjct: 119 STMQ 122


>gi|293413973|ref|ZP_06656622.1| DNA-binding transcriptional activator KdpE [Escherichia coli B185]
 gi|291434031|gb|EFF07004.1| DNA-binding transcriptional activator KdpE [Escherichia coli B185]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 244

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+ +  +R V      D  F V  A     A E   ++  P  +++D ++ G   L
Sbjct: 19  KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELV-RQWDPEVVLLDLNIPGPDGL 77

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    +  +V  L    D    + G  AGA+ +L KPF+   L   +  + + 
Sbjct: 78  EVCRRLRQ---FSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134

Query: 121 QK 122
            +
Sbjct: 135 PR 136


>gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23]
 gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23]
 gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W]
 gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      + G+   +A S  EA            +++D  M  + 
Sbjct: 1   MK-ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+++   + + +  +  +      I G   GA+ ++ KPFN   +   ++ L + 
Sbjct: 60  GM-DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 121 QKSKDEN 127
            +++  N
Sbjct: 119 SQNEVTN 125


>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+    + ++ +  F D G  V  AT      E    +   +  ++D  + G+   
Sbjct: 2   RILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQP-IDAAIVDIMLPGLDGR 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V  L    ++E    G   GA+ ++ KPF  E L F ++ + + 
Sbjct: 61  ELCRRLKA---TLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRR 117

Query: 121 QKSKDENQ 128
            +    +Q
Sbjct: 118 YQRSAASQ 125


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +        ++  ++V  A+    AR+F +     + +V+D  +  + 
Sbjct: 1   MK-ILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDV-FDYDLIVLDVMLPKLD 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G    +  L      +  + G  AGA+ +L+KPF+ E L   +R L 
Sbjct: 59  GIALCQQLRAN--GCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 256

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPN-----YLVID 53
           ++L+++   ++R+       + G+    A+   EA         +E  P       +++D
Sbjct: 23  NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82

Query: 54  ESMEG--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
             + G   L+    +R+   G  V +  +  +      + G   GA+ +L KPF    + 
Sbjct: 83  VMLPGINGLDLCRLIRRQ--GCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREML 140

Query: 112 FAMRELPQMQKSKD 125
              R L +  + + 
Sbjct: 141 ARCRALLRRTRIQQ 154


>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
          Length = 244

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A +  +A     ++  P+ +V+D  +      
Sbjct: 20  RVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAA-RDFTPDAIVLDWMLPDFDGL 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V +L  +   E  +AG  AG + ++ KPF+ E L   +R L +   
Sbjct: 79  EVLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAG 138

Query: 123 SKDENQ 128
           +    +
Sbjct: 139 ATRIEE 144


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +  +      + GF V++  +  EA +  + +   +  ++D  +    
Sbjct: 1   MK-VLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQD-IDLAILDIMLPDIS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+        +  L  +      I G   GA+ ++ KPF    L   ++   
Sbjct: 59  GLEICQTIRENYNF---PIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQL 115

Query: 119 QMQK 122
           +  K
Sbjct: 116 RRYK 119


>gi|302344896|ref|YP_003813249.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
 gi|302149775|gb|ADK96037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella melaninogenica ATCC 25845]
          Length = 878

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D +  +R   R + ++  + V EA +     E   K ++P+ ++ D  M  +    
Sbjct: 637 VLIIDDNIDIRTYLRSVLSEK-YNVSEAANGKVGLELARK-IVPDIVLSDIMMPVMDGLA 694

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   ++     + + V  L      E+   G   GA+++L KPF+   L   +  L Q +
Sbjct: 695 FCQQLKTDKAISHIPVILLTARSLDEQRAEGYEHGADAYLSKPFSLRLLFSRIDNLIQSR 754

Query: 122 KSKDEN 127
           K   + 
Sbjct: 755 KKLSKL 760


>gi|221105902|ref|XP_002159225.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V R   +   F V  A +  E  E  +K+   +  ++D  M     
Sbjct: 4   KKILLVEDDPNFGSVLRDYLSLNDFEVTLAKNGMEGFEKFKKDTY-DLCILDVMMPYKDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +           +V + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 63  YTLAREIREKNAEVPIIFLTAKTLKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 122

Query: 122 KSKDE 126
            S+ +
Sbjct: 123 ASESK 127


>gi|86609720|ref|YP_478482.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558262|gb|ABD03219.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 364

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 16/147 (10%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEA---REFCEKELLPNYLVIDESMEGV 59
            + +VD   +VR    ++     + V    S   A    +  E+   P+ ++ D  M  +
Sbjct: 37  RIWVVDDDPVVRCYIINVLKGSQYYVESWESARAAWDPLQSLEESEWPDMVICDWVMPEM 96

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               F   ++    G  V+   L    + E  + G  AGA+ F+ KP + E LR  +R  
Sbjct: 97  SGVEFCCRLKGSAAGQFVYFILLTSRSEVEARVEGLDAGADEFITKPVDPEELRARVRAG 156

Query: 118 PQMQK-----------SKDENQFLDAI 133
            ++Q+            +  N+ L+++
Sbjct: 157 LRLQRLTQALAQANRQLRARNELLESL 183


>gi|49473740|ref|YP_031782.1| transcriptional regulator [Bartonella quintana str. Toulouse]
 gi|49239243|emb|CAF25563.1| Transcriptional regulator [Bartonella quintana str. Toulouse]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 NARNQ 131


>gi|332528620|ref|ZP_08404602.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
 gi|332041936|gb|EGI78280.1| two component LuxR family transcriptional regulator [Hylemonella
           gracilis ATCC 19624]
          Length = 336

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       +     ++ G  V  A     A +    +  P+ +++D  M G+  F 
Sbjct: 17  VLIVDDVPDNLSLLHDALDESGCTVLVALDGASALQRA-AQARPDIVLLDAMMPGMDGFE 75

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + + ++    + E ++A   AG   ++ KP   + +   M    Q  
Sbjct: 76  VARRLKADATTAHIPIIFMTGLTETEHLVAALEAGGTDYVTKPIRPKEVLARMHVHLQGA 135

Query: 122 KSKDENQ-FLDA 132
           + + + +  LDA
Sbjct: 136 RERRQARNALDA 147


>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  +        G+ V       EA E    E   + +V+D ++ G+   
Sbjct: 2   RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENY-DLIVLDLNLPGMDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                      +  V  L         + G  AGAN ++ KPF+ + L   +R L + +
Sbjct: 61  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 119


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    +RK+ R  F   GF VFE  +  E  E  +     N +++D  +  +   
Sbjct: 2   NILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNN-INIVILDIMIPYLDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++R++     V +  L  + + E  + G   GA+ ++ KPF+ + L   ++ L + 
Sbjct: 61  KVCKNIRELSK---VPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKR 117


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L ++    +    R+     G+ V  A +  +A ++   E   +++++D  +     
Sbjct: 5   KQILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYL-SEQAFDFIILDIGLPDLNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +RQ    +   + +L    D    + G   GA+ +  KPF+   +   ++ + +
Sbjct: 64  FEVCKQLRQK---SQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120

Query: 120 MQKSKDE 126
             + + +
Sbjct: 121 RMEVQIQ 127


>gi|294012565|ref|YP_003546025.1| two-component system response regulator OmpR [Sphingobium japonicum
           UT26S]
 gi|292675895|dbj|BAI97413.1| two-component system response regulator OmpR [Sphingobium japonicum
           UT26S]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           +++LV+    +R +      + G+ V  A+S  E     +   + + +V+D  + G   +
Sbjct: 5   TIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPV-DLVVLDVMLPGTNGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+    +DV + ++  +      I G   GA+ +L KPF    L   +R + + 
Sbjct: 64  DLCRQIRRK---SDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120

Query: 121 QKSKD 125
              + 
Sbjct: 121 VGVER 125


>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +         +  + V++A +  EA          + ++ID  M  +   
Sbjct: 2   NILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEAL-LVFDNYEIHLVIIDIMMPVMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ V  L  + +    I G   GA+ ++ KPFN   L   ++ L + 
Sbjct: 61  RATMKIREKY-NIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRR 117


>gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016]
 gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + +    L    GF V  A +  +A          +  +ID S+    
Sbjct: 1   MKRIFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTAL-AGNKFDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++M    D+ V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTVCTEIKEM---QDLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +         G++V  A    E   +       + +V+D  +  +   
Sbjct: 2   RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEG-HYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120

Query: 123 SKDENQF 129
               ++F
Sbjct: 121 GHASSEF 127


>gi|77461924|ref|YP_351431.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385927|gb|ABA77440.1| Two component Transcriptional regulator, Winged helix family
           [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLEANTV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         +  L    D    I G   GA+ +L KPF    L   +  + +  
Sbjct: 66  LCRELRS-SKHRATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
 gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDE-TRRFSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|93006920|ref|YP_581357.1| CheA signal transduction histidine kinases [Psychrobacter
            cryohalolentis K5]
 gi|92394598|gb|ABE75873.1| CheA signal transduction histidine kinases [Psychrobacter
            cryohalolentis K5]
          Length = 2301

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD S  VRKV        GF V  A    +A E   +E+ P+ +++D  M  +  
Sbjct: 2174 TTILVVDDSVTVRKVTSRFLERQGFNVVLAKDGIDALEIL-QEMTPDLMLLDIEMPRMDG 2232

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR       + +  +      +        G N ++ KPF    L   ++ L 
Sbjct: 2233 FEVATQVRHNGRLQHLPIIMITSRTGEKHRERALEIGVNDYMGKPFQENQLLDKIQSLL 2291


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 1   MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 59  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117

Query: 121 QKSKD 125
             + +
Sbjct: 118 HHALN 122


>gi|302552915|ref|ZP_07305257.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470533|gb|EFL33626.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 260

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    +          +G+ V  A +   A         P  +++D  +  +   
Sbjct: 2   RVLLIEDDERIAGPLAEGLARYGYTVERARTGSAALAA----PEPEMVLLDLGLPDMDGL 57

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +DV +  +    +    + G   GA+ ++ KPF    L   +R + + 
Sbjct: 58  DVCRALRRR---SDVPIIMITARGEEIDRVLGLELGADDYMAKPFGVRELVARIRAVTRR 114

Query: 121 QKSK 124
            + +
Sbjct: 115 TRPQ 118


>gi|218694120|ref|YP_002401787.1| DNA-binding transcriptional activator KdpE [Escherichia coli 55989]
 gi|218350852|emb|CAU96548.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli 55989]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A     ++   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A     ++   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+  R      G++V EA    E   F       + +V+D  +  +   
Sbjct: 2   RVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEG-HFLGDTEPYDAIVLDVGLPVMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  SVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120

Query: 123 SKDENQF 129
               ++ 
Sbjct: 121 GHATSEL 127


>gi|15608167|ref|NP_215543.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Rv]
 gi|15840457|ref|NP_335494.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis
           CDC1551]
 gi|31792218|ref|NP_854711.1| transcriptional regulatory protein KdpE [Mycobacterium bovis
           AF2122/97]
 gi|121636956|ref|YP_977179.1| putative transcriptional regulatory protein kdpE [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148660809|ref|YP_001282332.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Ra]
 gi|148822236|ref|YP_001286990.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           F11]
 gi|215402842|ref|ZP_03415023.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|215410630|ref|ZP_03419438.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426309|ref|ZP_03424228.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T92]
 gi|215429888|ref|ZP_03427807.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|218752699|ref|ZP_03531495.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|219556895|ref|ZP_03535971.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T17]
 gi|224989428|ref|YP_002644115.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253799943|ref|YP_003032944.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           1435]
 gi|254231318|ref|ZP_04924645.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           C]
 gi|254550012|ref|ZP_05140459.1| transcriptional regulator kdpE [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185938|ref|ZP_05763412.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|260204245|ref|ZP_05771736.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289446608|ref|ZP_06436352.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|289555191|ref|ZP_06444401.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605]
 gi|289569007|ref|ZP_06449234.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17]
 gi|289573667|ref|ZP_06453894.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289744763|ref|ZP_06504141.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|289749559|ref|ZP_06508937.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92]
 gi|289753088|ref|ZP_06512466.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|289761163|ref|ZP_06520541.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|297633554|ref|ZP_06951334.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           4207]
 gi|297730539|ref|ZP_06959657.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           R506]
 gi|298524524|ref|ZP_07011933.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775163|ref|ZP_07413500.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001]
 gi|306781922|ref|ZP_07420259.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002]
 gi|306783723|ref|ZP_07422045.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003]
 gi|306788078|ref|ZP_07426400.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004]
 gi|306792411|ref|ZP_07430713.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005]
 gi|306796814|ref|ZP_07435116.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006]
 gi|306802700|ref|ZP_07439368.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008]
 gi|306806879|ref|ZP_07443547.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007]
 gi|306967079|ref|ZP_07479740.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009]
 gi|306971270|ref|ZP_07483931.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010]
 gi|307078999|ref|ZP_07488169.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011]
 gi|307083559|ref|ZP_07492672.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012]
 gi|313657868|ref|ZP_07814748.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           V2475]
 gi|1870001|emb|CAB06852.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium
           tuberculosis H37Rv]
 gi|13880629|gb|AAK45308.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis
           CDC1551]
 gi|31617806|emb|CAD93915.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium
           bovis AF2122/97]
 gi|121492603|emb|CAL71071.1| Probable transcriptional regulatory protein kdpE [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124600377|gb|EAY59387.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           C]
 gi|148504961|gb|ABQ72770.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Ra]
 gi|148720763|gb|ABR05388.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           F11]
 gi|224772541|dbj|BAH25347.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253321446|gb|ACT26049.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           1435]
 gi|289419566|gb|EFD16767.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|289439823|gb|EFD22316.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605]
 gi|289538098|gb|EFD42676.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289542761|gb|EFD46409.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17]
 gi|289685291|gb|EFD52779.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|289690146|gb|EFD57575.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92]
 gi|289693675|gb|EFD61104.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|289708669|gb|EFD72685.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|298494318|gb|EFI29612.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216312|gb|EFO75711.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001]
 gi|308325376|gb|EFP14227.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002]
 gi|308331505|gb|EFP20356.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003]
 gi|308335311|gb|EFP24162.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004]
 gi|308339119|gb|EFP27970.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005]
 gi|308342791|gb|EFP31642.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006]
 gi|308346700|gb|EFP35551.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007]
 gi|308350615|gb|EFP39466.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008]
 gi|308355248|gb|EFP44099.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009]
 gi|308359203|gb|EFP48054.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010]
 gi|308363105|gb|EFP51956.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011]
 gi|308366769|gb|EFP55620.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012]
 gi|323720527|gb|EGB29609.1| transcriptional regulator kdpE [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459686|gb|AEB05109.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           4207]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    + +  R      G+ V  A++   A      E  P+ +++D  +  + 
Sbjct: 1   MTLVLVIDDEPQILRALRINLTVRGYQVITASTGAGAL-RAAAEHPPDVVILDLGLPDMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +  +       V  L    D    +    AGA+ ++ KPF  +     +R   + 
Sbjct: 60  G-IDVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRR 118

Query: 121 QKSKDENQF 129
             +  E + 
Sbjct: 119 NTAAAELEQ 127


>gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira
            interrogans serovar Lai str. 56601]
 gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira
            interrogans serovar Lai str. 56601]
          Length = 1205

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           + ++ G  V +A     A E   K    + +++D  M  +  
Sbjct: 1085 KKILLVDDDMRNVFALSKILSEKGMNVLKAEDGNSALELLSKNEDVDLVLMDIMMPEMDG 1144

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R++    ++ +  L  +           AGAN ++ KP + E L   MR   
Sbjct: 1145 YETMKKIREISKYKNLTIIALTAKAMQNDRQKCIEAGANDYIPKPVDVERLFSLMRVWL 1203



 Score = 78.7 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++       V     N+ GF    A +  +      ++  P+ +++D  + G+  
Sbjct: 817 KVLLVIEDDLKFASVLIKQANEKGFKCISAATGEDGL-ILTRKYKPHAIILDLDLPGIKG 875

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRE 116
              +  ++       + V+ +      E  +   R GA   + KP +++ L      +  
Sbjct: 876 QTVLNELKADQSIRHIPVHIVSAN---EYSLELIRGGAVEHIRKPIHKKELDEAFNRIEN 932

Query: 117 LPQMQ 121
               +
Sbjct: 933 FINRK 937



 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
            M +LL+++     RK+   L  +     FEA S  EA      E   + +V+D  +  + 
Sbjct: 938  MKNLLIIEDDFNSRKMMLKLIGNGDVKCFEADSGKEAL-RVYAENHFDCIVLDIGLPDMS 996

Query: 60   -LEFIAHVRQMPLGTDVFVYYLLME--VDFEKMI 90
              E I  + ++  G    +     +     E   
Sbjct: 997  GFELIQEMEKIKNGRIPPIVIYTGKELTKEEDKE 1030


>gi|293397258|ref|ZP_06641530.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
 gi|291420176|gb|EFE93433.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R+  R      G  VFE+ ++            P+ +++D  +     
Sbjct: 6   TNILIVEDEKEIRRFVRTALESEGLRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +   + + V  L      E  ++   AGA+ +L KPF    L   +R   +  
Sbjct: 65  L-SFIRDLRQWSAIPVIVLSARNAEEDKVSALDAGADDYLSKPFGIGELLARVRVALRRH 123

Query: 122 KSKDENQFL 130
            S  +   L
Sbjct: 124 ASSQQENPL 132


>gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +  ++    + +         G+ +   ++    RE    E  P+ +++D ++    
Sbjct: 1   MTQIFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAI-AERQPDLVLLDWNLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  R++     V V  +         +    +GA+ ++ KPF+   L+  +  L + 
Sbjct: 60  GL-ALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRR 118

Query: 121 QKSKD 125
           +  +D
Sbjct: 119 RGGQD 123


>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + K         G+ V  A    EA     +E +P+  ++D  M G    
Sbjct: 16  RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKA-RESMPHVCILDVMMPGPDGF 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++ M    +V V  L      +  + G   GA+ +++KPF+ E L   +    + 
Sbjct: 75  EVCRMLKSMG---NVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRN 131

Query: 121 Q 121
           Q
Sbjct: 132 Q 132


>gi|189462824|ref|ZP_03011609.1| hypothetical protein BACCOP_03522 [Bacteroides coprocola DSM 17136]
 gi|189430440|gb|EDU99424.1| hypothetical protein BACCOP_03522 [Bacteroides coprocola DSM 17136]
          Length = 1486

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 4/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             ++LL++ +  +R   R +F+   F + EA +  E  E   K  +P+ ++ D  M     
Sbjct: 1226 KTMLLIEDNLELRFFLRSIFSQR-FRIIEAANGVEGLEKAIK-YVPDIIISDIMMPEKDG 1283

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +  +  +R+    + + +  L  + D +  +     GA+S++ KPF+   L   +  L  
Sbjct: 1284 ITLVKELREELTTSHIPIVLLTAKTDMDTKLQSLELGADSYITKPFSATYLEARVDNLLA 1343

Query: 120  MQKSKDE 126
             ++   +
Sbjct: 1344 RRQKLRQ 1350


>gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 2198

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
               L+VD           +   +   V  A +  E     E     + +++D  M  +  
Sbjct: 2078 KKALIVDDDVRNIFALTSMLERYQIQVLYAENGREGINVLENTPDIDVVLMDVMMPEMDG 2137

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                + +RQ      + +  L  +           AGA+ ++ KP + E L   +R    
Sbjct: 2138 YETTSLIRQNEQFKSLPIIALTAKAMQGDREKCIEAGASDYITKPVDTEQLLSLLRVWLY 2197

Query: 120  M 120
             
Sbjct: 2198 R 2198



 Score = 97.6 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      ++   +    GF V  A +         ++  P+ +++D  M  +    
Sbjct: 1812 LLIVEDDVNFARILIDMAQQHGFKVITAQNGSTGLALA-QQFYPSAVLLDIRMPEMDGWT 1870

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             +  ++  P    + V+ + +    E      + GA ++L KP + E +      ++   
Sbjct: 1871 VLDRLKHDPNTRHIPVHIMTV---EEGQQRSLQLGAIAYLQKPLSSEIISEALVKIKGFV 1927

Query: 119  QMQ 121
            + Q
Sbjct: 1928 ERQ 1930



 Score = 74.8 bits (184), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +LL+V+     R     L  +         +  EA E    +   + LV+D  +  +  
Sbjct: 1932 KNLLVVEDDDTQRHSIVELIGNSDVHTTAVATGAEALEAIRTKH-FDCLVLDLGLPDMTG 1990

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E I  ++ +P G  + +         +      R  A + ++K   + E L  
Sbjct: 1991 FELIEQIKLLPHGKTLPIIVYTGRDISKAQETELRRIAETIIIKDVRSPERLLD 2044


>gi|307328135|ref|ZP_07607315.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306886254|gb|EFN17260.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 257

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           LLLV+   ++R   R     +GF VF A       E   +E  P+ L++D  +     + 
Sbjct: 22  LLLVEDDKVIRNTVRMALERYGFTVFTAGDGLTGLEIF-REKQPDLLLLDVMLPELDGIG 80

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               VR+  L     +  +    D   +++G  AGA+ +++KP     L   +R L + 
Sbjct: 81  LCRRVREFSL---APILMMSARGDALDVVSGLEAGADDYVIKPCESAVLVARIRSLLRR 136


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 50/118 (42%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +  +  +   +  + + +A    +A E    +     +++D  +  +   
Sbjct: 5   KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKY--DNTFQLIILDLMLPYIDG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           I  +R++   + V V  L  + +    + G   GA+ +++KPF+   L   ++   + 
Sbjct: 62  IEVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRR 119


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  V        G+ V  A           +    + +++D  + G+  +
Sbjct: 2   RLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPY-DVIILDIMLPGMNGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +         +  L  +        G   GA+ +L KPF+   L+  +R L + 
Sbjct: 61  QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRR 118


>gi|256828716|ref|YP_003157444.1| response regulator receiver sensor hybrid histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577892|gb|ACU89028.1| response regulator receiver sensor hybrid histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 544

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 2/128 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R       +  GF + +A +  E  +  +    P+ L++D  M  +  
Sbjct: 10  TTVLVVDDDPFIRATTGASLSSRGFTILQAGNGQEGLDMFQAHG-PDLLIVDLKMPVMNG 68

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQM 120
                R   +     V  +  E   ++ +   R GA  +L+KP  +   L  A+ +  + 
Sbjct: 69  LELLSRLSGVTPHTPVLVVSGEGGLDEAVEALRLGAWDYLVKPIVSPTVLLHAVDKALER 128

Query: 121 QKSKDENQ 128
                EN+
Sbjct: 129 AALIRENE 136



 Score = 49.0 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVI-DESMEGVL 60
            +L+++S   VR          G+ +++  SV    E  ++E +  + ++  D  +  + 
Sbjct: 424 RILVIESHPEVRTTISSCLTKLGYQIWQTDSVAHGCELVQEEPMRFDLILTEDGPLNSLD 483

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              A      +   + +           ++    A     + KP +  TL  A+    
Sbjct: 484 MLCAT--AQKVNPALRIMLATA-SPLGNIVCSHHA-VCRIISKPVDMVTLGQALHHCL 537


>gi|226314402|ref|YP_002774298.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097352|dbj|BAH45794.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 459

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD     R +        G+   EA+    A +        + +++D  M G+  
Sbjct: 5   TRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISA-QKLVTSETIHVILLDLKMPGMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                        + +  +      E  I   + GA  +L KP+N   L   + +  + Q
Sbjct: 64  LSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVEKQ 123

Query: 122 KSKDENQFL-DAI 133
           +  +ENQ L +A+
Sbjct: 124 QLTEENQQLREAL 136


>gi|253699596|ref|YP_003020785.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251774446|gb|ACT17027.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. M21]
          Length = 458

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R     +  D G+    A    EA   C +E LP  +++D  M  +   
Sbjct: 4   TILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARE-LPGLVLLDIWMPKMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  +      E  +   + GA  F+ KP + E +   +     M +
Sbjct: 63  QTLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALAMNR 122

Query: 123 SKDENQFL 130
            K+EN  L
Sbjct: 123 LKEENAAL 130


>gi|218247226|ref|YP_002372597.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8801]
 gi|257061439|ref|YP_003139327.1| two component LuxR family transcriptional regulator [Cyanothece sp.
           PCC 8802]
 gi|218167704|gb|ACK66441.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8801]
 gi|256591605|gb|ACV02492.1| two component transcriptional regulator, LuxR family [Cyanothece
           sp. PCC 8802]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    +R   +      G+ V  A +  EA    E    P+ LV D  M       
Sbjct: 5   ILIADDDPGIRLAVKDYLELSGYSVITAQNGQEALSLLET-YRPHLLVSDIKMPQKDGYT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            + H+RQ+P    + V +L      E+ I G   G + +L KPF  + L+  +R L +  
Sbjct: 64  LVRHLRQLPEFRLLPVVFLTERGTKEERIQGYEVGCDVYLPKPFEMDELKAVIRNLVEKT 123

Query: 122 K 122
           +
Sbjct: 124 Q 124


>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
 gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
          Length = 227

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L V+    +    ++     G+ V  A +V EA          + L++D ++    
Sbjct: 1   MQKILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHY-DLLLLDVTLPDGT 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR     + + + +L        ++ G   G + ++ KPF    L   ++ L 
Sbjct: 60  GFDVCKEVRSS---STIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|309792432|ref|ZP_07686898.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308225542|gb|EFO79304.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 977

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+   ++R+V   +  + G+ V  + S  EA  + +  + P+ +++D  + G+    
Sbjct: 7   ILIVEDDPLIRRVYHDVLANSGYRVSLSASGEEALAYLQL-ITPDIILLDLGLPGIDGNE 65

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               V+       + V  L  + D    +A   AGA+ FL+KP   + L   +R + ++Q
Sbjct: 66  VTRQVKADRSKPFIPVMILSAQADLATSVASLDAGADDFLVKPVEIDALLARVRAMLRLQ 125

Query: 122 KSKD 125
           +++ 
Sbjct: 126 RAQR 129


>gi|296447289|ref|ZP_06889217.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
 gi|296255154|gb|EFH02253.1| response regulator receiver modulated diguanylate cyclase
           [Methylosinus trichosporium OB3b]
          Length = 455

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+         F V  AT+  +A   C ++   + +++D  M G+  F
Sbjct: 4   RILIVDDLAANVKLLEARLTAEYFDVLSATNGTDALRLC-RDDRCDIVLLDAMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + ++  P    + V  +         + G  AGA+ FL KP +   L   +R L ++
Sbjct: 63  EVCSRLKADPATAHLPVIMVTALDQPSDRVRGLDAGADDFLTKPVDEVALLARVRSLARL 122

Query: 121 QKSKDENQ 128
           +   DE +
Sbjct: 123 KMMLDELR 130



 Score = 86.0 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61
            +LL++      +            V       EA     E       + +D S    L 
Sbjct: 156 RILLIEDRAASAERIVSALRGL-HEVTIEADPQEALFRAAEGGFDMAAVSLDLSDFDALR 214

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  +    D ++++ G   G N ++++P +R  L   +R   + +
Sbjct: 215 LCSQMRSLERTRALPILIIADLDDRQRILRGLDLGVNDYIVRPIDRNELVARVRSQLRRK 274

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 275 RYADSLR 281


>gi|291560855|emb|CBL39655.1| Response regulator containing a CheY-like receiver domain and an
           HTH DNA-binding domain [butyrate-producing bacterium
           SSC/2]
          Length = 203

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 61/130 (46%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L++D   ++ K    + +D  + V  A S  +A     K ++P+ +++D  M  +    
Sbjct: 6   ILIIDDDLMLLKTAEEILSDQ-YNVSVAKSGIQALNLLNKNIIPDLILLDIDMPQMDGYE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++++     + + +L    + +  + G +AGA  +++KPF +E L   +    +  
Sbjct: 65  TLEEIKKISGCELIPIIFLTGFSEMDYEVRGLKAGAVDYIVKPFAKEILLARVERHLERY 124

Query: 122 KSKDENQFLD 131
           + +   + ++
Sbjct: 125 QQRQHKKSME 134


>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDE-TRRFSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
 gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
          Length = 1126

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+ D   +  +V        G+ V  A    E  +  E+E      ++D  M G+   E
Sbjct: 721 LLVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELL-LLDVMMPGMSGYE 779

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    + + +  L      +  I G  +GAN +L KPFN++ L   ++   +  
Sbjct: 780 VCQSLRETYSHSQLPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLKAS 839

Query: 122 KSK---DENQFLD 131
           K++    EN  L 
Sbjct: 840 KAELFLSENDRLQ 852


>gi|170721287|ref|YP_001748975.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169759290|gb|ACA72606.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1155

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD                G +V    +  EA E  E+    + +++D  M  +  
Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ P    + +  +  +   +      +AGAN +L KP + + L   +R   
Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149



 Score = 85.6 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++      ++   L ++ G+    A    E       + +P+ +++D  +     L 
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFALA-AQYIPDAILLDMRLPDHSGLT 823

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117
            +  ++++     + V+ +      E  +      GA  + +KP +RE L+     L
Sbjct: 824 VLQRLKELAATRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876



 Score = 47.9 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+   + R+    L  D    +       +      +E + + ++ID  +  +L 
Sbjct: 885 KHILLVEDDDLQRESIARLIGDDDVEITAVALAQD-ALALLRENIYDCMIIDLKLPDMLG 943

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEV 84
              +  +    + +   V       
Sbjct: 944 NELLKRMTAEDIRSFPPVIVYTGRN 968


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    +           GF+V    +  +       E   + +++D  + G    
Sbjct: 2   RVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEA-TENPFDVVILDIMLPGRSGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R   +     V  L  +            GA+ +L KPF+   L   +R L + 
Sbjct: 61  EVLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118


>gi|114797095|ref|YP_760220.1| putative diguanylate cyclase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114737269|gb|ABI75394.1| putative diguanylate cyclase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 313

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+VD      ++   +  D  + V  A S  +A E   +EL P+ +++D  M  
Sbjct: 1   MTRATILVVDDEISNIEIINAILEDQ-YEVCFAISGAQALETM-RELQPDLVLLDVLMPE 58

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     ++  P   D+ V +     D    + G   GA  ++ KP     LR  +  
Sbjct: 59  MDGFEVCKRIKNDPDLVDIPVIFTTGLGDTADEMRGLSLGAIDYVTKPIQPAILRARVTN 118

Query: 117 LPQMQKSKDENQFLD 131
             +++  +D+   L 
Sbjct: 119 HMELKSLRDQLANLA 133


>gi|86610149|ref|YP_478911.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558691|gb|ABD03648.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+      ++ +   +  G +V  A     A  +  +E   + L++D  + G   +
Sbjct: 2   RILLVEDDPEQLELLQAALSKCGHVVDCAKEGEMA-AWLMEEKAYDLLILDWMLPGPSGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +     RQ        V  L  +     ++ G  AGA+ +L+KP +   L   +R L + 
Sbjct: 61  QLCRQYRQSGGCA--PVLMLTAKDATSDVVQGLDAGADDYLVKPVDLVELLARVRALGRR 118

Query: 121 QKS 123
              
Sbjct: 119 SHQ 121


>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
 gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +    R       + V  A            E   +  VID  +  +   
Sbjct: 2   RILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHL-TEYPLDLAVIDLGLPKMNGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ +  L     ++  + G  AGA+ +L KPF+ E L      L +   
Sbjct: 61  EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120

Query: 123 SKDENQFLD 131
            +   + + 
Sbjct: 121 GQANPEMIA 129


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +    + K+         + V        A ++       + +++D  M     L
Sbjct: 2   RILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYL-AGAEYDVVILDIMMPKKDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ      V V  L  +   E  + G  AGAN +L+KPF  E L   +R L + 
Sbjct: 61  SVLREIRQ--KNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118

Query: 121 QKSKD 125
            +  +
Sbjct: 119 PEKSE 123


>gi|308070736|ref|YP_003872341.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860015|gb|ADM71803.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 1239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +   +   V  A +  EA E  E+    + +++D  M  +  
Sbjct: 1119 KKILLVDDDIRNVFALSSVLESYRMEVTFAENGREALELLEQTPDFDLVLMDMMMPEMDG 1178

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  +R MP    + +  L  +   +       AGA+ ++ KP   E L   MR   
Sbjct: 1179 YEAMRRIRLMPQFEKMPIIALTAKAMKDDRSKCIEAGASDYVKKPIQTEQLLSLMRVWL 1237



 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+++       +   +    GF    A    +     +   LP+ +++D  +  +  
Sbjct: 851 KVLLIIEDDINFANILYDMARSRGFKALVALQGDDGLNMAQS-YLPDAIILDIQLPVMDG 909

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
              +  ++       + V+ + +    + +  G   GA ++L KP ++E+L
Sbjct: 910 WSILGELKGNSSTRHIPVHVISV---IDDVKQGLMMGAIAYLKKPSSKESL 957



 Score = 73.7 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+     RK    L +     +   ++  EA      +   + +V+D  +  +  
Sbjct: 973  KRLLVVEDDDNQRKSIIELIDHDDVAITAVSTGQEALNELAIQRY-DCMVLDLMLSDMTG 1031

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E +  +R+     D+ +     +    K     R  A S ++K   + E L  
Sbjct: 1032 FELLDRIRENEQLADLPIIIYTGKDLDSKEETQLRKYAESIIIKDVKSPERLLD 1085


>gi|294809911|ref|ZP_06768586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294442902|gb|EFG11694.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 950

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 11/135 (8%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 692 TLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 749

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
             +  +R+    + + V  L  + D +        GAN+++ KPF++E L   + +L   
Sbjct: 750 EMLQSIRKDFQISHIPVIILTAKNDEDAKTKAITLGANAYITKPFSKEYLLARIDQLLAE 809

Query: 119 -----QMQKSKDENQ 128
                +  + + ENQ
Sbjct: 810 RKLFRERIRQQMENQ 824


>gi|224535938|ref|ZP_03676477.1| hypothetical protein BACCELL_00802 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522448|gb|EEF91553.1| hypothetical protein BACCELL_00802 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1345

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 4/125 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD    +RK          F + E+T+  EA     ++  P+ ++ D  M+ +   
Sbjct: 1086 KVLIVDDDEEIRKYICRELAS-DFHMMESTNGREALSIVLRQT-PDLVISDIMMQEMDGL 1143

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 ++Q      + V  L  +   E  + G   GA+++++KPFN + LR  +  + + 
Sbjct: 1144 TLCHKIKQNVNINHIPVILLTAKTREEDNMEGLDMGADAYIIKPFNIDILRKTVINIVKG 1203

Query: 121  QKSKD 125
            ++   
Sbjct: 1204 REMLR 1208


>gi|161522839|ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348324|ref|YP_001941520.1| two-component system aerobic respiration control protein
           [Burkholderia multivorans ATCC 17616]
 gi|160346392|gb|ABX19476.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189338462|dbj|BAG47530.1| two-component system aerobic respiration control protein
           [Burkholderia multivorans ATCC 17616]
          Length = 253

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++     +D    V  A    +      +    + +++D  M G     
Sbjct: 9   VLVVDDDPAIRELLSGYLSDNDIRVTVAACGQD-MAQALESFAIDLVILDLRMPGEDGV- 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R++   +++ ++ +  + D    +     GA+ +L KPF+   L   +R L +   +
Sbjct: 67  QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126

Query: 124 KD 125
             
Sbjct: 127 TA 128


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+       + R    + G+ V       +A      E+  + +V+D  + G+  F
Sbjct: 2   RVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQA-GEISYDAIVLDLMLPGLDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         +  L    D +  I G  AGA+ +L KPF+   L   +R L + 
Sbjct: 61  EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRR 118


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   +       + +++D  +  +   
Sbjct: 2   RILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEG-HYLGDAEPYDAVILDIGLPEMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118


>gi|332291060|ref|YP_004429669.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169146|gb|AEE18401.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLMMNDYNVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           D+ + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNEDIPIIFLTAKALKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124


>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+++    + ++ +    + G+    A      ++   ++   + +++D  +     ++
Sbjct: 3   ILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAY-DLIIMDIILPKINGID 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      D+ +  L      +  + G  AGA+ +L+KPF+   L   +R L + 
Sbjct: 62  LCREIK--ESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKR 118


>gi|297569164|ref|YP_003690508.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925079|gb|ADH85889.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfurivibrio alkaliphilus AHT2]
          Length = 505

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R       +  G+ V  A +   A E  E E  P+ +V D  M  +  
Sbjct: 6   RKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESE-APDLVVTDIRMPEMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +   +   + V  +      E  +   + GA  ++LKPF  E +   ++++ + Q
Sbjct: 65  IAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQQ 124


>gi|317053550|ref|YP_004118684.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316952655|gb|ADU72128.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +++       V         + V  A       E  ++ L P+ +++D  + G+  
Sbjct: 4   KRIQIIEDDADAADVLGAYLRRENYDVSMAHDGPSGLEMSQR-LRPDLILLDVMLPGMNG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +  +    +  V  +    D    I   R GA+ +++KP+N   +   ++ + +  
Sbjct: 63  -TEILAAVRRKGNTPVIMVTAMGDLPDKIGALRYGADDYVVKPYNPGEVVARVQAVLRRA 121

Query: 122 KSKDENQFL 130
             + E Q L
Sbjct: 122 SQEPEVQSL 130


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G++V       +  E   +    + +++D  + G  
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSY-DLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GLEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDE 126
           + +++ ++
Sbjct: 117 RREENTEQ 124


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL++    +R          G+ V +A    E   F  +E   + +++D  +  +   
Sbjct: 2   RLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGL-FLAREYPVDLVIVDLGLPKLNGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + +  L     ++  + G  AGA+ +L+KPF    L   ++ L + 
Sbjct: 61  TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRR 118


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 58  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 115

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 116 GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 174

Query: 121 QKSKD 125
             + +
Sbjct: 175 HHALN 179


>gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+   I+    +      G+ V  A S  EA      E   + +++D ++    
Sbjct: 1   MKRILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL--EHGFDLILLDRNLPDGR 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L++   +R+      V + +L        MI G RAG + ++ KPF+ E L   +  + 
Sbjct: 59  GLDYCRELRKSTK---VPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVL 115

Query: 119 QMQKS 123
           +  ++
Sbjct: 116 RRSEN 120


>gi|270293521|ref|ZP_06199723.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274988|gb|EFA20848.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 875

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  +R   + L     F V +A    E      K  +P+ ++ D  M G+   
Sbjct: 629 TVLVIDDNADIRNYVKSLLTQE-FRVLDAADGTEGIRLAMK-YVPDVVISDVMMPGMDGV 686

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPFN + L   +R L   
Sbjct: 687 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFNSQLLLSRVRNLIAN 746

Query: 121 QKSKDE 126
           ++   +
Sbjct: 747 RRQLRQ 752


>gi|260219834|emb|CBA26763.1| hypothetical protein Csp_G38260 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 359

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  ATS   A     +  LP+ +++D  M G+  F 
Sbjct: 53  VLIVDDVPDNLSVLHDALDESGYTVLIATSGEAALMRAMQA-LPDVILLDAMMPGMDGFE 111

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P  T + + ++    + E ++A   +G   ++ KP   + +   M       
Sbjct: 112 VARRLKAAPQTTHIPIIFMTGLTETEYLVAALESGGVDYVTKPIKPKEVLARMGVHLAGA 171

Query: 122 KSKDENQ-FLDA 132
           + + + +  LDA
Sbjct: 172 RERRQTRNALDA 183


>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF+         A     +E  P+ +++D  + G+
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAF-RENRPDIVLLDLMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R +   + V +  L  + D   ++ G  +GA+ +++KPF  + L   MR   +
Sbjct: 60  SGIDVA-RAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            LLL + + + +KV  +     G+         +A E   +    + +++D  M  +  F 
Sbjct: 1224 LLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRGGY-DAILMDVHMPVMDGFE 1282

Query: 63   -IAHVRQMP--LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A +R+     G    +  +       +      AG + ++ KPF ++ L+  +    Q
Sbjct: 1283 ATAQIREREAERGRHTPIIAMTANALRGERERCLEAGMDDYIAKPFKKDELKAVLERWIQ 1342

Query: 120  MQKS 123
              ++
Sbjct: 1343 KAEA 1346



 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 9/128 (7%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF----CEKELLPNYLVIDESMEG 58
             +L+VD +   R++ R     +  +   A S  EA E       +       ++D  M  
Sbjct: 1061 RVLIVDDNEANREILRRQTLGWDMVPTLARSGPEALEMMRAAARQGHPFELAILDMMMPE 1120

Query: 59   VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR--AGANSFLLKPFNRETLRFAM 114
            +        ++Q P   D  +  L   +   +          A + L KP  +  L   +
Sbjct: 1121 MDGIMLAREIKQDPSLADTPLILLSSYLFTREDHRAMDETLFA-AVLSKPTRQSYLFNTL 1179

Query: 115  RELPQMQK 122
              + Q  +
Sbjct: 1180 VRVLQESR 1187


>gi|256393335|ref|YP_003114899.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256359561|gb|ACU73058.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 241

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+      ++ R      G+    A     A    E +  P+ +V+D  + G     
Sbjct: 5   ILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVE-DCPPDLVVLDLMLPGADGLT 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+        V  +      + ++AG   GA+ ++ KP++   L   +R + +  
Sbjct: 64  ICRWLRRRGE---TPVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVLRRS 120

Query: 122 K 122
           +
Sbjct: 121 R 121


>gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A     ++   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  NATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|189425217|ref|YP_001952394.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
 gi|189421476|gb|ACD95874.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter lovleyi SZ]
          Length = 453

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L++D    +R +   +    G+    A    EA          +Y++ D  M  
Sbjct: 1   MKQPHILIIDDEENLRHMLSVMLRKQGYHADTAAGGEEALAKLSGHAY-DYILCDIRMPE 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       + +  G    +  +      +  +A  + GA  F+ KPF R+ +   +++  
Sbjct: 60  MDGREFLRQAVSSGVTAPIVMMTAYGAVDTAVACMQEGAYDFISKPFKRDEIVIVLKKAE 119

Query: 119 QMQKSKDENQFLDA 132
           + ++ K+EN+ L A
Sbjct: 120 ERERLKEENRTLRA 133


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    V    +    +  F V  A +  E     E     + +++D  +    
Sbjct: 1   MK-ILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHY-DLILMDIMLPKKD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                           V  L  +   E ++AG  +G++ +L KPF    L   ++ L + 
Sbjct: 59  GLTVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRR 118


>gi|120598873|ref|YP_963447.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293039|ref|YP_001183463.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558966|gb|ABM24893.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145564729|gb|ABP75664.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 4/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   + R          G  V  AT+  +           + +++D  M  + 
Sbjct: 11  MSKILLVDDDPLFRTWLADALIAHGHEVECATNGLDGLNRIRAG-FADVIMLDLVMPQMN 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++         V  L      +  I G   GA+ FL KPF+ + L   +  L + 
Sbjct: 70  GF-EVLKARE--CSTPVMMLSARDSEDDRIMGYELGADDFLSKPFSIKELIVRLGALERR 126

Query: 121 QKSKDENQ 128
             S    Q
Sbjct: 127 LHSHRIMQ 134


>gi|125973056|ref|YP_001036966.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125713281|gb|ABN51773.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 223

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +         D GF V  A    EA    +K    + L++D S++   
Sbjct: 1   MPKILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKY-DLLLVDISLKDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F   +  R+     D+ V +L    D   ++ G   GA+ +++KPF    L   +R+  
Sbjct: 60  GFAVCSAAREN---NDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
 gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 NARNQ 131


>gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 43/129 (33%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL++    V           G+ V       +     +K    + LV+D  +  +   
Sbjct: 2   RILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDGL 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  L    + +  + G +AG + +L+KPF    L   +  L + QK
Sbjct: 62  TIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQK 121

Query: 123 SKDENQFLD 131
           S      L 
Sbjct: 122 SSTSETKLK 130


>gi|91787249|ref|YP_548201.1| two component LuxR family transcriptional regulator [Polaromonas
           sp. JS666]
 gi|91696474|gb|ABE43303.1| two component transcriptional regulator, LuxR family [Polaromonas
           sp. JS666]
          Length = 349

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  ATS   A     ++ +P+ +++D  M G+  F 
Sbjct: 27  VLIVDDVPDNLSVLHDALDESGYTVLVATSGEAALNRA-RQAVPDIVLLDAMMPGMDGFE 85

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++ M     + + ++    + E ++A   AG   ++ KP   + +   M    Q  
Sbjct: 86  VAKRLKAMAETAHIPIIFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVMARMGVHLQGA 145

Query: 120 ---MQKSKDENQFLDAI 133
               Q+++   Q  +A+
Sbjct: 146 RRARQEARQAGQARNAL 162


>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +          +      +  +  E    E   + +++D  +    
Sbjct: 1   MSRILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDW-DAILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    VRQ+    +  +  +         ++G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLDICRRVRQV---KNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVL 116

Query: 119 QMQKSKDEN 127
           +  + ++E 
Sbjct: 117 RRVELENEQ 125


>gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +  + +      G+ V  A +  +A         P+ +++D  + G+
Sbjct: 1   MRARILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALAANN--PDLIILDIMLPGI 58

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
                   +R     +D+ +  L    D    + G   GA+ +L+KPF  E 
Sbjct: 59  DGLAVCRQIRSN---SDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEE 107


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R++ +      GF V  A    +      +      +V+D  + G+  +
Sbjct: 2   RILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALA-RGTEYAAIVLDVMLPGLSGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    +  L  +        G   GA+ +L KPF+   L   +R L + 
Sbjct: 61  QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRR 118


>gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 729

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+   I +++ R +  D G  V  A    EA      E     +++D  M  +  
Sbjct: 606 RRVLLVEDEPINQEIAREMLKDVGLCVDTADDGREAV-RLSAERDYALILMDMQMPNMDG 664

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +RQ P G  + +  +   V  E       AG + FL KP   ETL   +    
Sbjct: 665 LEATRCIRQTPRGARIPIVAMTANVFAEDREHCLEAGMDDFLAKPVMPETLYGVVERWL 723


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    + +         G+ V       +  E    E   + +++D  + G  
Sbjct: 1   MHHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAI-EKNYDIILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      +  +  L         + G  +GA+ +L KPF  E L   +R + 
Sbjct: 60  GMEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIF 116

Query: 119 QMQKSKD 125
           + ++ ++
Sbjct: 117 RREQKEE 123


>gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
 gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
          Length = 236

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    +  +      + G+ V +A+   +  +  ++      L++D  M G+   
Sbjct: 6   SILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLKEHPEVRMLILDIMMPGIDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +++ +  L  + +    I G   GA+ +L KPF+   L   ++   + 
Sbjct: 66  EVCREIRK---TSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKR 122


>gi|224537981|ref|ZP_03678520.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520387|gb|EEF89492.1| hypothetical protein BACCELL_02870 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1474

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLLV+ +  + ++ +    D  F +  A +  E  +       P+ +V D+ M  +   
Sbjct: 1216 NLLLVEDNKDLCQLIKLQLEDK-FNIHIANNGVEGLKKVHL-YHPDIVVTDQMMPEMDGL 1273

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              +  +R+    + + V  L  + D          GAN+++ KPF++E L   + +L   
Sbjct: 1274 EMLQSIRKDFQISHIPVIILTAKNDEGAKTKAITLGANAYITKPFSKEYLLARIDQLLSE 1333

Query: 119  -----QMQKSKDENQ 128
                 +  + + ENQ
Sbjct: 1334 RLLFRERIRLQMENQ 1348


>gi|239817396|ref|YP_002946306.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239803973|gb|ACS21040.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 247

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V    +    R   E+    + +++D  + G     
Sbjct: 9   ILIVDDDREIRELLTTYLVKNGLRVVAVPTGRHMRAALEESGPFDLIILDLMLPGEDGLT 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         +  L    +    I G   GA+ +L KPF+   L   +R + +  
Sbjct: 69  LCRDLRT-GKYKATPILMLTARSEEADRILGLEMGADDYLAKPFSARELLARLRAVMRRT 127

Query: 122 KSKDEN 127
           +    N
Sbjct: 128 RMLPPN 133


>gi|229916205|ref|YP_002884851.1| response regulator receiver modulated serine phosphatase
           [Exiguobacterium sp. AT1b]
 gi|229467634|gb|ACQ69406.1| response regulator receiver modulated serine phosphatase
           [Exiguobacterium sp. AT1b]
          Length = 370

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC---EKELLPNYLVIDESMEG-- 58
           +L+VD   +   V   L +   +     +S  EA +     +   L + +++D  M G  
Sbjct: 3   ILIVDDEPVNTLVLEQLLHQHDYETVSVSSGEEALDLLMAPQAASLYDLVLLDVEMPGIS 62

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +RQM    ++ V  +    + +++  G  A A+ +  KP     L   +R   
Sbjct: 63  GIETCKRIRQMADFEELPVIMVSGRTEEKQIAEGLDAEASDYTTKPIKITELLARIRSAL 122

Query: 119 QMQKSKDENQFLDA 132
           + + + DE +  +A
Sbjct: 123 RYKAAVDERKIYEA 136


>gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L V+    + +    +     + V          +    +L  + +++D  +    
Sbjct: 1   MK-ILYVEDEKYMARAIAQVLKKNNYSVDVCYDGESGLDMALTDLY-DIIILDILLPQKD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +  +  +R+   G +  V  L  + D E  + G  +GA+ +L KPF  E L   +R L 
Sbjct: 59  GISVLRELRR--KGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALG 116

Query: 119 QMQKS 123
           + +  
Sbjct: 117 RRKGQ 121


>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARR-FSPDVVVLDLGLPELDGL 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 73  EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRR 129

Query: 121 QK 122
            +
Sbjct: 130 PR 131


>gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1197

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 6/129 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+ +  + +    L     + ++ A    E  E   K   P+ +V D  M  
Sbjct: 507 MAKPSILVVEDNVEMNRFIAELLASR-YRIYTAYDGVEGLEKL-KGFTPDLIVTDCMMPN 564

Query: 59  V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +   E +  +RQMP   ++ +  L  + D    +     G + ++ KPF+ E L   +  
Sbjct: 565 MSGDEMVERIRQMPEYDNIPIVLLTAKADENMRVKLLNNGCSDYINKPFSAEELTARITN 624

Query: 117 LPQMQKSKD 125
           L  M+K+K 
Sbjct: 625 LMSMKKAKQ 633



 Score = 79.9 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 18/130 (13%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-------------LLPNY 49
             +++VD       +   +    G       S  +A    ++                 + 
Sbjct: 954  KVMVVDDFEETLHLLSVMLTKQGAKAETYLSAADAINAFQQNIKSTDSTESTTASAPVDI 1013

Query: 50   LVIDESMEGVLE--FIAHVRQMPL---GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKP 104
            ++ D +M  V    FI  +R+           V  L               G N  + KP
Sbjct: 1014 ILTDITMPHVDGYKFIEMIRERENSLGLPATPVIALTAAASIADKTKVQSFGFNMHIAKP 1073

Query: 105  FNRETLRFAM 114
             N   L  ++
Sbjct: 1074 VNLYELTNSI 1083


>gi|269959667|ref|ZP_06174047.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835590|gb|EEZ89669.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +    E   + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMELDYADNGELGLKLAM-ENTFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLAMCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMMALIRR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|188990198|ref|YP_001902208.1| two-component system response regulator protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731958|emb|CAP50144.1| two-component system response regulator protein [Xanthomonas
           campestris pv. campestris]
          Length = 280

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E R+    +  P+ +V+D  M G     
Sbjct: 49  VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRI-TQRRPDLIVLDVMMPGEDGLS 107

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  +
Sbjct: 108 AARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQ 166


>gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
 gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +    +  +  +      +  +  ++       + +V+D  + G+  F
Sbjct: 2   RILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQY-DVIVLDVMLPGLNGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  + +    + G   GA+ ++ KPF+ E L   +R L + Q
Sbjct: 61  EVVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQ 119


>gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630]
 gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L N  GF+V   ++  EA     K    +  +ID S+    
Sbjct: 1   MKRIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNK-FDLALIDISLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     D+ V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTICTEIKEK---QDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RK 118


>gi|194439219|ref|ZP_03071299.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli 101-1]
 gi|253774332|ref|YP_003037163.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160762|ref|YP_003043870.1| DNA-binding transcriptional activator KdpE [Escherichia coli B str.
           REL606]
 gi|300932412|ref|ZP_07147674.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 187-1]
 gi|194421804|gb|EDX37811.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli 101-1]
 gi|242376457|emb|CAQ31159.1| KdpE transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253325376|gb|ACT29978.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972663|gb|ACT38334.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli B str. REL606]
 gi|253976857|gb|ACT42527.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli BL21(DE3)]
 gi|300459855|gb|EFK23348.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 187-1]
 gi|323963145|gb|EGB58714.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|332524525|ref|ZP_08400732.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107841|gb|EGJ09065.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 663

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLV+   + R+V   L  + G  V  A    +A E   +    + +++D  M G+  
Sbjct: 534 RTVLLVEDDAVNREVTSCLLAEAGLAVELAEDGLQALECVARRSY-DLVLMDMQMPGLDG 592

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                 +RQ+P G DV V  L      E       AG + F+ KP +   L  A+
Sbjct: 593 LEATRRLRQLPRGHDVPVVALTANAFAEDRGRCLAAGMDDFITKPVDPARLFEAV 647


>gi|332094359|gb|EGI99410.1| KDP operon transcriptional regulatory protein kdpE [Shigella boydii
           5216-82]
          Length = 152

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALESDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR-ELPQ 119
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R  L +
Sbjct: 60  G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALLR 118

Query: 120 MQKSKDENQ 128
            ++++   +
Sbjct: 119 HRRARSAGE 127


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+++    + ++  +     GF V          E        + +++D  + G+  F  
Sbjct: 2   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEY-DLILLDVMLPGMNGFQI 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +    G    +  L  +   E+++ G + GA+ ++ KPF    L   +  + + 
Sbjct: 61  LEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 116


>gi|284929446|ref|YP_003421968.1| LuxR family two component transcriptional regulator [cyanobacterium
           UCYN-A]
 gi|284809890|gb|ADB95587.1| two component transcriptional regulator, LuxR family
           [cyanobacterium UCYN-A]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           +LLVD    V    +      G  +V  A +  EA +  E   +P+ ++ D  M  +   
Sbjct: 7   ILLVDDEPSVCDSIQAYLEYNGDLIVKIANNAKEAWKLLET-TIPDIIISDVMMPEIDGY 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F+  +R       + + +L         I G  AG +++L KPF+ E L   ++   + 
Sbjct: 66  QFLERIRHNNRLQTIPLIFLTARGMTADRIKGYNAGCDAYLPKPFDPEELEAIVKSFLER 125

Query: 121 QKSKDE 126
           +K  ++
Sbjct: 126 RKINEK 131


>gi|291286123|ref|YP_003502939.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883283|gb|ADD66983.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 121

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L VD S  +R++ +      G+ V EA+   +A        + + +V D +M  +  
Sbjct: 3   KTILTVDDSASIRQMVKFTLTKEGYNVIEASDGKDALTKAGSNTV-DMVVTDLNMPNMDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +R  P    + +  L  E    K   G  AGA  +++KPF  E L    +++ +
Sbjct: 62  ITLIKELRAQPKFKFIPIIMLTTESQDGKKSEGKSAGATGWIVKPFKPEQLITITKKVLR 121


>gi|225619217|ref|YP_002720443.1| response regulatory protein AtoC [Brachyspira hyodysenteriae WA1]
 gi|225214036|gb|ACN82770.1| response regulatory protein (atoC) [Brachyspira hyodysenteriae WA1]
          Length = 449

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +R   +      G+ V  A +  +  E   K    + ++ D  M    
Sbjct: 1   MPKILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIEAVYKGG-IDLVITDLKMPEKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  +  +     + V  L    + E  +   R GA  F+ KPFN + +   +    
Sbjct: 60  GEEFLKDI--LDFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARAL 117

Query: 119 QMQKSKDENQFLDA 132
           + +  K  N+ L++
Sbjct: 118 ESKNIKKANETLES 131


>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +       F V   T   +  +    E   + +++D  + GV 
Sbjct: 1   MSRVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTED-FDMIILDIMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIREK---KDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 ERYR 120


>gi|163756173|ref|ZP_02163288.1| two-component system, transcriptional regulatory protein [Kordia
           algicida OT-1]
 gi|161323785|gb|EDP95119.1| two-component system, transcriptional regulatory protein [Kordia
           algicida OT-1]
          Length = 237

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLSMNDYDVVHAKNGMEGFEKFKKDNY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F          T+V + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNTEVPIIFLTAKALKEDVMKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124


>gi|146328950|ref|YP_001209795.1| two component phosphate response regulator PhoB [Dichelobacter
           nodosus VCS1703A]
 gi|146232420|gb|ABQ13398.1| two component phosphate response regulator PhoB [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    ++++  +   D  +   EA ++ +A+   +++ +P+ +++D  +     
Sbjct: 3   KRILLVEDEPAIQQLLLYGLQDQ-YQCIEAGTLAQAKTILQQQ-IPDLVLLDWMLPDGSG 60

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R++     + V  L    D   +I G   GA+ +L KPF+   L+  ++ L +
Sbjct: 61  IKILEDLRKIETLRYLPVIMLTARADERDIIKGLDYGADDYLTKPFSMAELQSRIKALFR 120

Query: 120 MQKSKDENQ 128
                +E Q
Sbjct: 121 RMPESEEEQ 129


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+    A           +E+ P+ +++D  +  +    
Sbjct: 7   VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKF-REVNPDLVILDLMLPVLDGLE 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R++   ++  +  L  +   +  + G  +GA+ +L+KPF+ E L   +R   + 
Sbjct: 66  VA-RRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 121


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD    +R   R++    G+ + E  +  +A  FC+++ +P+ +++D  M  +  F
Sbjct: 926  RVLIVDDDRTMRMALRNVLEKGGYWIDEVINGSQALAFCKQQ-MPDLVLMDAVMPVLDGF 984

Query: 63   --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               A +R +P      V  +    D   + +   AGA  ++ KP +   L+  +  L   
Sbjct: 985  NACAQIRDLPGSKHTPVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLQKRVARLLDA 1044

Query: 121  QKSKDENQFLD 131
             +++ +   L 
Sbjct: 1045 SRAEKDIHQLA 1055



 Score =  121 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ + + ++V   +    G  V   ++  EA +      +   +++D  M  +  
Sbjct: 663 RRVLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALDAM-SGKVYELVLMDCHMPQMDG 721

Query: 62  --FIAHVRQMPLG-TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R    G   V +  +   V          AG N +L KP     LR  +R   
Sbjct: 722 YEATRQIRIREAGKKQVPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 781



 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 11/139 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
            LL+V+ S + R+     F+ +G     A +  +A +       +    + +++DE+   
Sbjct: 520 RLLIVEDSTVSRRFLGQTFSSWGMYHGCAENGQQALKMLRSAVAEGRSYDLVLVDENTPD 579

Query: 59  --VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR--AGANSFLLKPFNRETLRFAM 114
              LE    + +  L   V +  +         ++     +G  +++ KP  + +L   +
Sbjct: 580 LKGLELAQQIAEDSLIASVKIILM---GRQRHPVSDISPLSGVVNYVAKPVQQSSLYNTI 636

Query: 115 RELPQMQKSKDENQFLDAI 133
               +  K         AI
Sbjct: 637 ITAVKQNKEVVSETLSAAI 655


>gi|260220645|emb|CBA28392.1| Transcriptional regulatory protein ompR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 274

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD    + ++     + F F V  A      R    +  + N +V+D  + G    
Sbjct: 34  SILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAV-NLVVLDVMLPGTDGL 92

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   + + V  L         I G   GA+ ++ KPF    L   +  + +  +
Sbjct: 93  TLS-REIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQ 151

Query: 123 SKDE 126
              E
Sbjct: 152 GAKE 155


>gi|218889615|ref|YP_002438479.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|218769838|emb|CAW25598.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 246

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +       V  L    D    I G   GA+ +L KPF+   L   +  + +  
Sbjct: 66  LCRELR-VGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE-KELLPNYLVIDESMEGVL 60
            ++L+ +     R           ++V  A     A +  +    + + +V+D  M  + 
Sbjct: 8   QTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLD 67

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R     ++V +    +       + G   GAN +++KPF+ + L   +R + 
Sbjct: 68  GFQVCQRLRA---TSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSIL 124

Query: 119 QMQKSKDE 126
           +    + E
Sbjct: 125 RRAARRQE 132


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+     R+  R    + GF+V  A +  + R     E   + +V+D  +  + 
Sbjct: 1   MK-LLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEH-FDLIVMDIMLPDLD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +         G    V +L         + G  +GA+ +L+KPF    L   +R + + 
Sbjct: 59  GWRLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRR 118


>gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 254

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 13/141 (9%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP------NYLVIDES 55
             +LLV+     R          GF V EA     A E  E    P      + +++D  
Sbjct: 19  TRILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLM 78

Query: 56  ME--GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           +      E    +R     + V V  L  +      I G   GA+ ++ KP++   L   
Sbjct: 79  LPRLDGTEVCTRIR---RSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLAR 135

Query: 114 MRELPQMQKSK--DENQFLDA 132
           ++ + +  +    +  Q L A
Sbjct: 136 LKAVLRRSRVVPDEPEQVLAA 156


>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D  H + K+  H     G+ V  A    EA       L P+ +++D  M  +   
Sbjct: 4   TILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGA-LKPDLVILDIMMPKLDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  + +    DV +  L  + D    I G + G + +  KPF+   L   ++ + +  K
Sbjct: 63  EACQK-IKGAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSK 121


>gi|317476245|ref|ZP_07935496.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316907656|gb|EFV29359.1| response regulator receiver domain-containing protein [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 375

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD       + + L  +  F +  A +  +A E  +KE  P+ +++D  M      
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFAIATANNGQQALEQVDKEH-PDLVLLDVMMPDLSGF 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   D+ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 70  EVAQRLKSNPDTADIPIIFLTALNSTTDIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129

Query: 121 QKSKD 125
             +K 
Sbjct: 130 VAAKR 134


>gi|215485723|ref|YP_002328154.1| DNA-binding transcriptional activator KdpE [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312965132|ref|ZP_07779369.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli 2362-75]
 gi|331682108|ref|ZP_08382732.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli H299]
 gi|215263795|emb|CAS08131.1| DNA-binding response regulator in two-component regulatory system
           with KdpD [Escherichia coli O127:H6 str. E2348/69]
 gi|312290223|gb|EFR18106.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli 2362-75]
 gi|331080787|gb|EGI51961.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli H299]
          Length = 225

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|198282255|ref|YP_002218576.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246776|gb|ACH82369.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 234

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +       FGF V   +   +  E    E   + +V+D  +     
Sbjct: 5   KQILVVDDDLRLRGLVESHLQGFGFGVRGMSDGRQ-IESLLAEAPVDLIVLDLGLPHEDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     DV +  L    D    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 64  LQICRRLRQH---HDVPILMLTARGDEVDRILGLEMGADDYLAKPFHPRELVARIQAILR 120

Query: 120 MQKSKDE 126
             +  D 
Sbjct: 121 RVRGADR 127


>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++   +    GF         +A      +  P+ +++D  + G+   
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAF-HDAKPDLVLLDLMLPGLDGI 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R       V +  L  + D   ++ G  +GA+ +++KPFN + L   +R   +
Sbjct: 63  QVCDLIRAESG---VPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLR 118


>gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 245

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57
             LL+V+    +R+         G+ V    +  EA      +       + +V+D  + 
Sbjct: 13  KRLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               +E    VR+        +  +  +      + G   GA+ +L+KPF    L    R
Sbjct: 73  NLNGIELCRRVRKN--NIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCR 130

Query: 116 ELPQM-----QKSKDENQFLD 131
            + +      +K++D +Q L 
Sbjct: 131 AILRRSETNHEKAQDSSQVLS 151


>gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 238

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    +RK+        G++V EA++  +  E  +     + +++D  +  +   
Sbjct: 4   RVLVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDY-SCVLLDVHLPILNGK 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++ +R+        V  +  + D +  + G   GA+ +++KPF+   L   +  + Q 
Sbjct: 63  SILSELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQR 119

Query: 121 QK 122
            K
Sbjct: 120 TK 121


>gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 253

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       + + + +  G+ V  A +   A +  +K   P+ L++D +M  +  F 
Sbjct: 29  ILVVDDDRFANTLVQFVLSKEGYEVETADNPRGALQMIQK-REPDLLILDVTMPYINGFE 87

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +    G ++ + ++  +   E  + G   GA+ ++ KP+N + L   ++ + +  K
Sbjct: 88  FSAKLKAEGYEIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIK 146


>gi|289549393|ref|YP_003470297.1| response regulator [Staphylococcus lugdunensis HKU09-01]
 gi|315659938|ref|ZP_07912797.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289178925|gb|ADC86170.1| response regulator [Staphylococcus lugdunensis HKU09-01]
 gi|315495226|gb|EFU83562.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++VD    +    +      GF    A +  EA E   +    + +++D  M    
Sbjct: 1   MYNIMIVDDEENIVSFIQESLKLEGFKTTVAYNGREALEKINEH--IHLIILDIKMPYSD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F     Q    +++ + +L  + + +  +     GA  ++ KPF  E L   +  +   
Sbjct: 59  GFEVA--QSLSQSNIPIIFLTAKDNLDTRLKCFSLGAKDYIAKPFYMEELIVRIENILTQ 116

Query: 121 QKSKDENQFLD 131
             S  +N+ + 
Sbjct: 117 NNSYSKNKNIK 127


>gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           +V+ + ++R +        G+ V  A    EA+E    +  P  +++D  +  +      
Sbjct: 9   VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFL-QYSPCAVILDLMLPKLSGEEVC 67

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +R      ++ +  L  ++  E  I G R GA+ +++KPF+ E L   +  + + 
Sbjct: 68  RWIRSQKRN-EISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRR 123


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + K         G+            +    +   + +++D  +    
Sbjct: 1   MSRILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQD-FDLILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR++    +  +  +         ++G   GA+ +++KPF  E L   +R L 
Sbjct: 60  GIEVARRVREL---KNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALL 116

Query: 119 QMQKSKD 125
           +    +D
Sbjct: 117 RRINIED 123


>gi|256042377|ref|XP_002569366.1| sensor histidine kinase/response regulator [Schistosoma mansoni]
 gi|227277727|emb|CAY18622.1| two-component system sensor histidine kinase/response regulator
           (intestinal bacteria-bacteroides thetaiotaomicron),
           putative [Schistosoma mansoni]
          Length = 235

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LL+D    +  +        G+ V  A S+   RE   ++ + + LV+D  +       
Sbjct: 8   ILLIDDDMRLSAMVADYLRSHGYQVSTAASLTAGRELLGRQAM-DALVLDLMLPDGDGLD 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + V  L    +    I G   GA+ +L KPF    L   ++ + + +
Sbjct: 67  LCRELRASPRTRSLPVLMLSARGEPTDRIVGLEVGADDYLPKPFEPRELVARLQTVLRRR 126

Query: 122 KS 123
           ++
Sbjct: 127 RA 128


>gi|212704463|ref|ZP_03312591.1| hypothetical protein DESPIG_02519 [Desulfovibrio piger ATCC 29098]
 gi|212672184|gb|EEB32667.1| hypothetical protein DESPIG_02519 [Desulfovibrio piger ATCC 29098]
          Length = 523

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD  H +R+  + L +  G+    A S  EA     +E +P  +V+D  M G+ 
Sbjct: 1   MAEILIVDDDHHLRQGFQRLLDAEGYETRTAASAEEALNLM-REKMPQCVVMDVRMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP-- 118
              A  R   L     V  +      E  I   R GA  ++LKPF+   +   ++     
Sbjct: 60  GLEALKRMRALEGCPPVVIMTAYSTTETAIEATRLGAFDYMLKPFDIPQVLELLQRALAA 119

Query: 119 ----QMQKSKDENQFL 130
               +  +++   + L
Sbjct: 120 GESQRRHEAQSAEESL 135


>gi|12964066|emb|CAC29257.1| putative regulatory protein [Bartonella taylorii]
          Length = 240

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 SARNQ 131


>gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 230

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D    +R+V        G           A +   +   P+ +V+D  M  +    
Sbjct: 5   ILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGR-RAPDLVVLDIGMPEMDGLE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +R     +DV V +L    +    I G   G + ++ KPF+   L   +  + 
Sbjct: 64  VCRRLR---HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117


>gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G++V       EA    + E     +V+D  + G+   
Sbjct: 2   RVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDY-AAIVLDLGLPGMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         V  L     + + + G  AGA+ +L KPF  E L   +R + +   
Sbjct: 61  AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 123 SKD 125
            + 
Sbjct: 121 GQA 123


>gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 775

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 4/121 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+V+ +  +R+          + + +A +  EA     KE     ++ D  M  +   
Sbjct: 530 SILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIV-KEQEVGLILTDVMMPVMDGL 587

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V  L  + D ++ + G + GA+ ++ KPF+   +   ++ L + 
Sbjct: 588 QLCKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFRT 647

Query: 121 Q 121
           +
Sbjct: 648 R 648


>gi|310658379|ref|YP_003936100.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308825157|emb|CBH21195.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +         +  + VF+A +   A +  EKE + + +++D  M  +  F
Sbjct: 5   NILIVEDDKQIADAIEIYMKNQNYGVFKAHNGQLAIDIFEKE-VIHLIIMDVMMPVMDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120
              + ++   + V +  L  + +    IAG   GA+ ++ KPFN   L   +    +   
Sbjct: 64  T-AIMKIRQSSTVPIIVLSAKSEDMDKIAGLNIGADDYVTKPFNPMELIARVNSNLRRYV 122

Query: 121 ----QKSKDENQFLDAI 133
               +K  D+N  L +I
Sbjct: 123 NFSMKKESDKNSKLISI 139


>gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1827

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1705 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1764

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                + +R+MP    + +  L  +           +GA+ ++ KP + + L   M 
Sbjct: 1765 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVME 1820


>gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
 gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
 gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
 gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 224

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    + K    +     + V        A E+ E +   + +++D  M  +   
Sbjct: 2   RLLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNY-DGVILDIMMPKIDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G+ V V  L  + + +  + G  AGAN +L KPF+   L   +R + + Q 
Sbjct: 61  TVLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAMTRTQT 120

Query: 123 SKDENQF 129
           +  ++Q 
Sbjct: 121 AHPDSQL 127


>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +RK  R      G+ V EA +  E          P+ LV+D  +  +   
Sbjct: 9   TILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSK-PDLLVLDLGLPDMDG- 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    + V V  L +     + +    +GAN ++ KPF  +     +R L +   
Sbjct: 67  QQVLREFREWSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALLRQAP 126

Query: 123 SKDENQ 128
           + +  +
Sbjct: 127 AGEAQE 132


>gi|258515402|ref|YP_003191624.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779107|gb|ACV63001.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 922

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD           +    G  V  A +  E      +    + +++D  M  +  
Sbjct: 802 RKILIVDDDLRNVFSLTVVLEKHGVKVLFAENGKEGINALRENPDIDLVLMDIMMPEMDG 861

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              +  +RQ+     + V  L  +           AGA+ ++ KP N E L   ++   
Sbjct: 862 YEAMQTIRQIHEYETLPVIALTAKAMKNDREKCIDAGASDYISKPVNVEQLLSLIQVWL 920


>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
 gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
          Length = 232

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+    +R +  +     GF V  A +  EA ++C  +   + +++D  +     
Sbjct: 5   KHILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQT-FDLVILDIMIPKLNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  +R+      + +  +  +        G   GA+ ++ KPF+       ++ + +
Sbjct: 64  LEVLKVIREQAA---LPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
 gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +    V++  S  EA    E  +  +  ++D  +  +   
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMES-VDFDLAILDIMLPDISGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G    +  L  + +    I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICQIMR--EKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRR 120

Query: 121 QK 122
            K
Sbjct: 121 YK 122


>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 233

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+++    ++++         + V  A    +  E   K    + +++D  +    
Sbjct: 10  MNKILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSY-DLVLLDLMLPKKS 68

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R++       +  +  +      +     GAN ++ KPF  E L   +R   
Sbjct: 69  GKEVCQELRKLAE---TPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVAT 125

Query: 119 QMQKSKDENQF 129
           + +++ +  QF
Sbjct: 126 RNKENSNNKQF 136


>gi|84625308|ref|YP_452680.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369248|dbj|BAE70406.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 242

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 11  VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  +S
Sbjct: 70  AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 129

Query: 124 KDEN 127
            +E 
Sbjct: 130 SNEQ 133


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 17  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 75  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 133

Query: 121 QKSKD 125
             + +
Sbjct: 134 HHALN 138


>gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 233

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ R      G+ V EA    +A E    +  P+ +V+D  +      
Sbjct: 7   KILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDK-PDIVVLDLGLPDTDGH 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + +  L    D   ++     GA+ ++ KPF  + L   +R      +
Sbjct: 66  TLLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVAL-RHR 124

Query: 123 SKDENQ 128
            + + Q
Sbjct: 125 LQQQGQ 130


>gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 57/132 (43%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+V+    +R++        G+ V+ A    +A E  E +   + ++ D  M    
Sbjct: 1   MINILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFE-DKHIDLVICDIMMPKVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R      ++ +  +  +   E    G   GA+ +++KP + + +   +  L 
Sbjct: 60  GYELVKDLRN--SNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALL 117

Query: 119 QMQKSKDENQFL 130
           +  +  +E++ +
Sbjct: 118 RRSRISNEHKLI 129


>gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 636

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD  + +  +         ++V           +       + +V+D  +  +   
Sbjct: 2   RVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYA-STFDYDLVVLDWMLPQLSGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  V +  L ++ +    I G  AGA+ +++KPF+ + L   +R L +   
Sbjct: 61  HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120

Query: 123 SKDE 126
            + E
Sbjct: 121 HETE 124



 Score = 97.6 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++VD      K    L + + F +   T+          ++LP+ +V D  M      
Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLF-NQVLPDLVVFDVEMPQINGF 568

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN----RETLRFAMRE 116
           E    +R       + + +L +  D  K       GA+ ++ KP +       L   + +
Sbjct: 569 ELARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATRLLNRLNQ 628

Query: 117 LPQMQK 122
              +++
Sbjct: 629 TADIRR 634


>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + K       D  ++V  AT      +F E       +++D  +  +   
Sbjct: 2   RILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEA-FSYKLILLDVMLPKLDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L  +      + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 61  SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRR 118


>gi|90414215|ref|ZP_01222196.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
 gi|90324765|gb|EAS41303.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
          Length = 488

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+ S   + + + +    GF V  A +  EA    E     + +++D  M  +  F
Sbjct: 361 TILLVEDSPSNQMIAKAILAKNGFNVATANNGKEAVAALE-NTSYDLILMDLQMPEMNGF 419

Query: 63  --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               ++R +     D+ +  +   V  +  +     G + FL KP N+  +   +     
Sbjct: 420 EACTYIRDLHNNKSDIPIIAMTANVSQQDQVQCLSVGMDDFLTKPINKIKMLEVLHHWLG 479

Query: 120 MQKSKD 125
              S  
Sbjct: 480 RNHSHK 485


>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
           tenjimariensis]
          Length = 234

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF V          E    +  P+  ++D  + G+  
Sbjct: 4   THVLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRAD-RPDIALLDVMLPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 63  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+V+    + +          + V          +        + +++D  +    
Sbjct: 1   MTNILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNY-DLIILDLMLPNIN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    VRQ        +  +  + D    + G   GA+ +++KPF  E L   +R + 
Sbjct: 60  GLEICRRVRQE---QSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVL 116

Query: 119 QMQKSKD 125
           + Q  KD
Sbjct: 117 RRQPQKD 123


>gi|324014608|gb|EGB83827.1| transcriptional regulatory protein OmpR [Escherichia coli MS 60-1]
          Length = 239

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L VD    +R +      + GF V    +  +  +        + +V+D  + G    
Sbjct: 6   KILGVDDDMRLRALLERYLTEQGFQVRSVANAEQ-MDRLLTRESFHLMVLDLMLPGEDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  +  + +    I G   GA+ ++ KPFN   L   +R + + Q 
Sbjct: 65  SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124

Query: 123 SK 124
           ++
Sbjct: 125 NE 126


>gi|317476823|ref|ZP_07936066.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
 gi|316906998|gb|EFV28709.1| response regulator receiver domain-containing protein [Bacteroides
            eggerthii 1_2_48FAA]
          Length = 1420

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +R   R +  D  + VFEA    EA        + ++++ D  M  +   
Sbjct: 1168 SILVVEDNADMRGYIRSILRDK-YNVFEAAHGAEALNILNSHSV-DFIISDLMMPVMDGI 1225

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V++    + +    L  +   E  +   R G + +LLKPF+   L   +  + + 
Sbjct: 1226 ELSRRVKENFAISHIPFLMLTAKTSQESRLESYRIGVDEYLLKPFDETLLLTRIENILEN 1285

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1286 RKRYQK 1291


>gi|317479509|ref|ZP_07938640.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904329|gb|EFV26152.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 875

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  +R   + L ++  F V +A    E      K  +P+ ++ D  M G+   
Sbjct: 629 TVLVIDDNADIRNYVKSLLSNE-FRVLDAADGTEGIRLAMK-YVPDVIISDVMMPGMDGV 686

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPFN + L   +R L   
Sbjct: 687 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFNSQLLLSRVRNLIAN 746

Query: 121 QKSKDE 126
           ++   +
Sbjct: 747 RRQLRQ 752


>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+  H + ++  H     GF +  A    E     +++   + +++D  +    
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSY-DLILLDIMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F+  +R+    +++ V  +  +        G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GMDFLKIIREK---SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|299139390|ref|ZP_07032565.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598659|gb|EFI54822.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 236

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 52/123 (42%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL+D    +  +        GF +  A +  +     +++     +++D  + G+  F
Sbjct: 7   RLLLIDDDRSLAALITEYCGSGGFSITAADTGEDGIRLAQQQ-YFLLIILDVMLPGIDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   ++  +  L      +  I G  +GA+ +L KPF  E L   ++ + +   
Sbjct: 66  -EVLRRIRYSSNTPILMLTTRGAAKDRIHGLESGADDYLPKPFQPEELLARIQSILRRVH 124

Query: 123 SKD 125
            ++
Sbjct: 125 PRE 127


>gi|218129958|ref|ZP_03458762.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697]
 gi|217988068|gb|EEC54393.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697]
          Length = 1420

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+V+ +  +R   R +  D  + VFEA    EA        + ++++ D  M  +   
Sbjct: 1168 SILVVEDNADMRGYIRSILRDK-YNVFEAAHGAEALNILNSHSV-DFIISDLMMPVMDGI 1225

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V++    + +    L  +   E  +   R G + +LLKPF+   L   +  + + 
Sbjct: 1226 ELSRRVKENFAISHIPFLMLTAKTSQESRLESYRIGVDEYLLKPFDETLLLTRIENILEN 1285

Query: 121  QKSKDE 126
            +K   +
Sbjct: 1286 RKRYQK 1291


>gi|167951072|ref|ZP_02538146.1| two-components system response regulator [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 220

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++ +  +           G++V  A S         +E + + +++D ++  +    
Sbjct: 3   ILVIEDNPDLVANLYDFLEPRGYVVDAAGSARGGL-HFVQEKVYDAIILDLTLPDMDGLE 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G D  V  L      +  + G  +GA+ +L+KPF  + L   ++ L +    
Sbjct: 62  VCKRLRDSGCDTPVLMLTARDTLDDKLEGFGSGADDYLVKPFAMQELDARLKALVRRVSG 121

Query: 124 KDENQFL 130
               + L
Sbjct: 122 DQSRELL 128


>gi|156742258|ref|YP_001432387.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233586|gb|ABU58369.1| response regulator receiver protein [Roseiflexus castenholzii DSM
           13941]
          Length = 263

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++++VD    +  +  H     G+         +A +     + P+ +++D  M  +   
Sbjct: 7   TIMVVDDDPAISTLISHQLRSLGYRTVCLRDGLQALQQM-AIIQPDLVLLDVMMPHMSGW 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     ++  +  L  +     +I G  AGA+ ++ KP+    L   +    + 
Sbjct: 66  DICRQIRA---CSEAPIILLTAKDADADVINGLNAGADDYVTKPYRIAQLHARIEAALRR 122


>gi|108760941|ref|YP_632415.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
           xanthus DK 1622]
 gi|34329419|gb|AAQ63912.1| mutant NtrC-like activator [Myxococcus xanthus]
 gi|108464821|gb|ABF90006.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
           xanthus DK 1622]
          Length = 471

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD     R+    + N+ G+ V EA +  EA      E  P  ++ D  M  +  
Sbjct: 4   QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARI-GEFSPAVVLTDVRMPQMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G+D     +      E  +   ++GA++FLLKP + + +   + ++ + +
Sbjct: 63  LTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLEKR 122

Query: 122 KSKDENQFL 130
             + E + L
Sbjct: 123 SLRQEAEAL 131


>gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51]
 gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  ++L D    +R V  H+  + G+    A    EA    E E  P+ +++D  M    
Sbjct: 1   MK-IMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAEN-PDLVILDVMMPKLN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R+   G++V +  L  + D      G +AGA+ +L+KPF+   L   +  L 
Sbjct: 59  GFDVCTQLRK--KGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALL 116

Query: 119 QMQKSK 124
           + ++ +
Sbjct: 117 RRREHQ 122


>gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +  +      G+    A    +  +   +  + + +V+D  +  + 
Sbjct: 1   MTLVLIIEDEAQLARAMQINLRAHGYQAITAGLGADGLKLAAQHPV-DIVVLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R +   + V V  L      E  +    AGA+ ++ KPF  + L   +R   + 
Sbjct: 60  GV-EVIRGIRGWSSVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRR 118

Query: 121 QKSKDE 126
             ++ E
Sbjct: 119 SPAQRE 124


>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 227

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + ++     N  G+    A +  +       E   + +++D  M  +  F
Sbjct: 4   TILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL--VAAENDIDLVLLDVMMPELSGF 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120
               R    G  V V  L    +    +AG   GAN ++ KPF  E L   +R L ++  
Sbjct: 62  EVLRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTT 121

Query: 121 QKSKDENQF 129
           Q + + NQ 
Sbjct: 122 QAAVETNQL 130


>gi|319782570|ref|YP_004142046.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168458|gb|ADV11996.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 242

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R + +   +  GF V  A    E  +        + +V+D  +       
Sbjct: 7   ILVVDDDREIRTLLQRYLDSQGFRVTAAADRRECEQRL-GSGQFDLIVLDVMLPDGSGLD 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         +  L    +    I G   GA+ +L KPFN   L   +R + +  
Sbjct: 66  ICRGLR--DRKPHTPIILLTALKEDVDRIIGLELGADDYLGKPFNPRELIARIRAVLRRS 123

Query: 122 KSKD 125
             ++
Sbjct: 124 TPEE 127


>gi|239502568|ref|ZP_04661878.1| AdeR [Acinetobacter baumannii AB900]
          Length = 242

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+  + +  +        G  V  A +  +A E        + +++D  +     
Sbjct: 13  KQILVVEDEYDIGDIIEQYLKREGMRVIRAMNGKQAIE-IHASQPIDLILLDIKLPELNG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E ++ +RQ        V  L         +   R GA+ F++KPFN   +   ++ + +
Sbjct: 72  WEVLSKIRQKA---QTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLR 128

Query: 120 MQKSKDE 126
                 +
Sbjct: 129 RTHQNQQ 135


>gi|160888745|ref|ZP_02069748.1| hypothetical protein BACUNI_01163 [Bacteroides uniformis ATCC 8492]
 gi|156861644|gb|EDO55075.1| hypothetical protein BACUNI_01163 [Bacteroides uniformis ATCC 8492]
          Length = 919

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  +R   + L ++  F V +A    E      K  +P+ ++ D  M G+   
Sbjct: 673 TVLVIDDNADIRNYVKSLLSNE-FRVLDAADGTEGIRLAMK-YVPDVIISDVMMPGMDGV 730

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPFN + L   +R L   
Sbjct: 731 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFNSQLLLSRVRNLIAN 790

Query: 121 QKSKDE 126
           ++   +
Sbjct: 791 RRQLRQ 796


>gi|94263976|ref|ZP_01287778.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455648|gb|EAT05830.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 362

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD +     + + + +   + V  AT+   A +       P+ +++D  M  +  
Sbjct: 6   KSVLVVDDTQTNIDILKGILSQ-DYTVKVATNGRLALKVAMSAKPPDLILLDVMMPDMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      ++ V ++  + + E    G   GA  ++ KP +   ++  ++   +
Sbjct: 65  YEVCRLLKADEKTFNIPVIFVTAKSEIEDEALGFTLGAADYITKPVSAPIVQARVKTHLE 124

Query: 120 MQKSKDENQFLDAI 133
           M    D  + L+++
Sbjct: 125 MY---DRRRLLESM 135


>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +    +      G++V+EA    EA E   K + PN +++D  + G+   
Sbjct: 10  TILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARK-INPNIVILDIMLPGMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              + +++    +   V  L    + +  + G   GA+ ++ KPF+ + L   +    +
Sbjct: 69  EVCSIIKKSIKTS---VIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIR 124


>gi|328542823|ref|YP_004302932.1| transcription regulator protein [polymorphum gilvum SL003B-26A1]
 gi|326412569|gb|ADZ69632.1| Putative transcription regulator protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 233

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LLLVD    +R +   +  D G+ V  A +  EA   C   L  + L++D  M G   L+
Sbjct: 14  LLLVDDDSRIRDLLSRVLRDSGYRVTSAANAAEA-RRCMAGLEFDLLILDVMMPGETGLD 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+      V +  L    D    IAG   GA+ +L KPF    L   +  + +  
Sbjct: 73  LARTIRRE---NTVPILMLTARSDAADRIAGLEVGADDYLAKPFEPRELMLRIAAILRRG 129

Query: 122 KSKDENQ 128
             +   +
Sbjct: 130 GQRRTER 136


>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +    +    + G+ V  A +  +A          + +++D  +    
Sbjct: 1   MK-ILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNY-DLVILDVMIPKIN 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R+        +  L  +   +  + G  AGA+ +L KPF    L   +R + 
Sbjct: 59  GLEVCRILRREKNPAY--IILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVL 116

Query: 119 QMQKSKDEN 127
           +      EN
Sbjct: 117 RRNSEDKEN 125


>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + ++Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|289662595|ref|ZP_06484176.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668461|ref|ZP_06489536.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 239

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 8   VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRTAMAQRRPDLIVLDVMMPGEDGLS 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 67  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 126

Query: 124 KDEN 127
            +E 
Sbjct: 127 SNEQ 130


>gi|167033148|ref|YP_001668379.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859636|gb|ABY98043.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 1149

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD                G +V    +  EA E  E+    + +++D  M  +  
Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ P    + +  +  +   +      +AGAN +L KP + + L   +R   
Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1143



 Score = 86.8 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++      ++   L ++ G+    A    E  E    + +P+ +++D  +     L 
Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAQGADEGFELA-AQYIPDAILLDMRLPDHSGLT 817

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117
            +  +++      + V+ +      E  +      GA  + +KP +RE L+     L
Sbjct: 818 VLQRLKEQAGTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 18/138 (13%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLV+   + R+    L  D    +       +A     +E + + ++ID  +  +L 
Sbjct: 879  KHILLVEDDDLQRESIARLIGDDDVEITAVAFAQDALALL-RENIYDCMIIDLKLPDMLG 937

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111
               +  +    + +   V           +   ++  +R+    GA        + E L 
Sbjct: 938  NELLKRMTAEDIRSFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 990

Query: 112  FAMRELPQMQKSKDENQF 129
              +       +S+  N+ 
Sbjct: 991  DEVTLFLHKVESQLSNER 1008


>gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 261

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 9/125 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +++V+ + ++ +          F V  AT   EA +   K  +P  +++D  ++      
Sbjct: 11  IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKH-VPGLIILDIVLDDGNGCD 69

Query: 62  FIAHVR------QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               +R      +     DV +  L    D E  + G RAGA+ +L KPF+   L F ++
Sbjct: 70  LCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIK 129

Query: 116 ELPQM 120
            + + 
Sbjct: 130 SILRR 134


>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
 gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
          Length = 232

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
 gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
 gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
 gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
 gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
 gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
 gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
 gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
 gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
 gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
 gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
 gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
 gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
 gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
 gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
 gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
 gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
 gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
 gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
 gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
 gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
 gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
 gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
 gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
 gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
 gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
 gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
 gi|383762|prf||1904198A vanR gene
          Length = 231

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 10/132 (7%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD  H +  +      +  + VF+  +  EA E C  +   +  ++D  + G   L
Sbjct: 4   KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALE-CIDKSEIDLAILDIMLPGTSGL 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  TICQKIRDKHTY---PIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119

Query: 121 QKS----KDENQ 128
            K     K++N+
Sbjct: 120 YKKFSGVKEQNE 131


>gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1067

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +L+VD + + R+V   +    G  V   +S  EA +  EK +  + + +D  M G+  F
Sbjct: 936  RVLVVDDNMVNRQVAYKMLQSMGCNVDVVSSGMEALDRIEK-VTYDMIFLDIMMPGMDGF 994

Query: 63   --IAHVRQMP-----LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
                 +R+           + +  +      E  +    +G + +L KP      R
Sbjct: 995  QVTKEIRERELKRSNGTKHIPIIAMTANAFKEDEVKCINSGMDDYLSKPIKITEFR 1050



 Score = 36.3 bits (84), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 24/138 (17%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE----LLPNYLVIDESMEG 58
            +LL++ +   R         +   +     V +A   CE         ++++ID +  G
Sbjct: 784 RVLLIERNANQRNFLTQQMGVWNIFLDSTDDVNDAIVMCEHAIAMLRPYSFIIIDLATVG 843

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLME------------VDFEKMIAGARAGANSFLLKPFN 106
               +   +                               +      ++G    + KP  
Sbjct: 844 NDALLLAQKLTEQSKA------SGHMLQLILLVPLKMRSPQLEEEARKSGFGEIVTKPIR 897

Query: 107 RETLRFAMREL--PQMQK 122
              L  +++ L   Q QK
Sbjct: 898 MSVLLDSLKSLSGLQRQK 915


>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 217

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +   N   +    A +  EA +  E     + +++D  +  + 
Sbjct: 1   MIKILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIE-NDSFDLILLDVMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F    +  PLG  + V +L  +      + G RAGA+ ++ KPF    L   +  + +
Sbjct: 60  GFTLLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLR 116


>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 256

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ +        A     +EL P+ +V+D  +  +   
Sbjct: 32  RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGAL-RAARELRPDAVVLDMMLPDMDGL 90

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      DV V +L  +   E+ +AG  AG + ++ KPF  E +   +R L +   
Sbjct: 91  SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 150

Query: 123 SKDE 126
           + D 
Sbjct: 151 AADR 154


>gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++    + +      +   F +  A    +  +   +E   + +++D  + G+  
Sbjct: 28  KRVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEW-DVILLDVMLPGLDG 86

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R +       +  L         + G  +GA+ ++ KPF  E L   +R + +
Sbjct: 87  IAVCQKIRSV---KKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFR 143

Query: 120 MQKSKD 125
            Q+ ++
Sbjct: 144 RQEEQE 149


>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 7/133 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  LL+V+    +  + +     +G+ V  A+   EA  + +     + +++D ++    
Sbjct: 1   MK-LLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEY-DVIILDLNLPKID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    +++ +  L      E  + G   GAN +L+KPF+   L   +R L 
Sbjct: 59  GIEVLKQIRQKD--SEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLI 116

Query: 119 QMQKSKDENQFLD 131
           + +  + EN  L 
Sbjct: 117 RRKFIQ-ENSMLS 128


>gi|154506010|ref|ZP_02042748.1| hypothetical protein RUMGNA_03552 [Ruminococcus gnavus ATCC 29149]
 gi|153793509|gb|EDN75929.1| hypothetical protein RUMGNA_03552 [Ruminococcus gnavus ATCC 29149]
          Length = 140

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +LL++    +R+  R L     + V EA +     E    E   + +++D  M G
Sbjct: 1   MKKEQVLLIEDDADIREGVRILLESENYCVEEAENGKSGLELLSDET--DLVILDIMMPG 58

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +R++   ++V V +L  +      + G  AG + +L KPF+   L   ++ 
Sbjct: 59  MSGLRTCEEIRKV---SNVPVLFLTAKAQESDKLIGLMAGGDDYLAKPFSYAELLGRVKA 115

Query: 117 LPQMQKSKD 125
           L +      
Sbjct: 116 LLRRYNIYR 124


>gi|146306862|ref|YP_001187327.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575063|gb|ABP84595.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 225

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVF---EATSVCEAREFCEKELLPNYLVIDESME 57
           M  LLL+D    + ++        GF V    EA +   A         P+ +V+D  + 
Sbjct: 1   MSRLLLIDDDQELCELLSSWLTQEGFQVTACHEAGNARRALAL----QAPDAVVLDVMLP 56

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                    +      ++ V  L    +    I G   GA+ +L KP +   L   +R +
Sbjct: 57  DGSGLELLKQLRSEHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAV 116

Query: 118 PQM 120
            + 
Sbjct: 117 LRR 119


>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGINGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|261213122|ref|ZP_05927406.1| chemotaxis regulator CheY [Vibrio sp. RC341]
 gi|260838187|gb|EEX64864.1| chemotaxis regulator CheY [Vibrio sp. RC341]
          Length = 119

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L VD S  +R++  H   D G+ V  A+   +A    +K    + ++ D +M   G
Sbjct: 1   MARVLAVDDSISIRQMVSHTLQDAGYEVETASDGRDALVKAQKS-RFDVIISDVNMPVMG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  VR         +  L  E   EK   G   GA  +L+KPFN ETL   ++ + 
Sbjct: 60  GFEFVKAVRLQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 119


>gi|238755886|ref|ZP_04617215.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
 gi|238705907|gb|EEP98295.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           ++V+    +R+  R      G+ VFE+ ++            P+ +++D  +        
Sbjct: 1   MIVEDEKEIRRFVRTALESEGWRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDGLT- 58

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
           ++R +   + + +  L      E  +A   AGA+ +L KPF    L   +R   +   + 
Sbjct: 59  YIRDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHGAA 118

Query: 125 DEN 127
            + 
Sbjct: 119 GQE 121


>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|253702066|ref|YP_003023255.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251776916|gb|ACT19497.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. M21]
          Length = 453

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D    +R+V  +     G+ V+ A       +    E  P  +V D  M G    
Sbjct: 4   KILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLFV-EKSPAVVVTDLKMPGKSGF 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E ++ +++        V  L      +  +   + GA  +L KPFNRE L+  + +  Q+
Sbjct: 63  EVLSAIKESS--PATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120

Query: 121 QKSKDENQFLDA 132
           Q   +EN+ L  
Sbjct: 121 QGLSEENRLLKE 132


>gi|17229732|ref|NP_486280.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17131331|dbj|BAB73939.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 196

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 5/135 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +R +   +     F V +A +        +KE +P+ ++ D +M    
Sbjct: 1   MTKILVIEDQEDIRSIIVEMLTAENFYVMDAENGQVGITMLQKE-IPDLIICDIAMPKID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +   R+ P    +   +L  +     +  G   GA+ +L+KPF R  L  A+    
Sbjct: 60  GYEVVTWSRENPETEAIPFIFLTAKASQNDIRQGIELGADDYLVKPFTRAELLGAITARL 119

Query: 119 QMQK--SKDENQFLD 131
           + Q+  ++   + L+
Sbjct: 120 EKQEIINRQTQKRLN 134


>gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 222

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +           G+ V       +A      E   + +V+D  + G+   
Sbjct: 2   RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPY-DLIVLDLGLPGMSGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    V  L     + + I G +AGA+ +L KPF+ E L+  ++ L +   
Sbjct: 61  EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 123 SKDENQFLDA 132
                  L++
Sbjct: 121 GMANQPTLES 130


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +         G+      +     +    E   + +++D  +  + 
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDEN-FDVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  +         ++G   GA+ +++KPF  E L   +R L + 
Sbjct: 60  GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118

Query: 121 QKSKDENQ 128
            + +++ Q
Sbjct: 119 IQIENDQQ 126


>gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 223

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+ + + +K+        G+    A++  EA    + E +   ++ D  M  + 
Sbjct: 1   MIKILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEV-QLIITDIMMPMMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R      +V +  +  +   E M  G   GA+ +++KP   + L   ++ L 
Sbjct: 60  GYQLIQELR--SAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALL 117

Query: 119 QMQKSKDENQFL 130
           +      ++Q +
Sbjct: 118 RRANIVAQHQLI 129


>gi|313204627|ref|YP_004043284.1| two component, sigma54 specific, transcriptional regulator, fis
           family [Paludibacter propionicigenes WB4]
 gi|312443943|gb|ADQ80299.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [Paludibacter propionicigenes WB4]
          Length = 383

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +R   + +       V  A +  +  E   +  + + +  D  M  + 
Sbjct: 1   MAKILVIDDERSIRNTLKDILEFEKHQVTLAENGKQGLEAA-QNAVFDLIFSDIKMPEMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     +  +  +  +    + E  +   + GA  F++KP +   L   +R   + 
Sbjct: 60  GIELLGHLHEISIEAPIVMISGHGNIETAVECIKKGAFDFIVKPIDLNRLLITVRNALER 119

Query: 121 QKSKDENQFLD 131
                E + L 
Sbjct: 120 NTLVTETKTLK 130


>gi|295090418|emb|CBK76525.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +L+VD    +    + +F+  G+  +  ATS   A +  E E  P+ +V+D  M  +  F
Sbjct: 6   ILIVDDETDLLDALQSIFSRAGYKYILTATSGKTALKIWE-EKQPDIIVLDVMMSDMDGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++++   + V +  L    + +    G   GA+ +LLKPF  + L F ++ + + 
Sbjct: 65  -EVLKEIRKTSKVPILMLTARGEADDKFTGFENGADDYLLKPFLPKELLFRVQAILKR 121


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    +           GF+V    +  +       E   + +++D  + G  
Sbjct: 1   MK-VLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEA-TENPFDVVILDIMLPGRS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R   +     V  L  +            GA+ +L KPF+   L   +R L 
Sbjct: 59  GYEVLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALV 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    + ++ + +  D G  V  A       +   +    +  ++D  +  +    
Sbjct: 3   ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDY-DLAILDLMLPDLDGVE 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              H+R         +  L      E  + G  AGA+ +L+KPF    L   +  L +  
Sbjct: 62  ICRHLRA--ARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRA 119

Query: 122 KSKD 125
           +  D
Sbjct: 120 RGTD 123


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +         G+      +     +    E   + +++D  +  + 
Sbjct: 1   MSRILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDEN-FDVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  +         ++G   GA+ +++KPF  E L   +R L + 
Sbjct: 60  GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118

Query: 121 QKSKDENQ 128
            + +++ Q
Sbjct: 119 IQIENDQQ 126


>gi|260587288|ref|ZP_05853201.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|331083607|ref|ZP_08332718.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542483|gb|EEX23052.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|330403818|gb|EGG83370.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 231

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +++V+    VR +         +   EA +   A         P+ +++D  +  
Sbjct: 1   MNKPLIMVVEDDAAVRNLITTTLETHEYRFQEAATGETAILEVATHN-PDVILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  ++++       +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IEVIQKIRTWAKTPIIVISARSEDIDKIEALDAGADDYLTKPFSVEELLARLRVTF 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    + +         G+ V       E       E + + +V+D  + G+   
Sbjct: 2   RLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRA-TEGVHDLVVLDIMLPGMNGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R    G DV V  L  +        G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  RVCAALRA--AGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ VF+A+   EA E  E+E + N +V+D  M  +  
Sbjct: 3   NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R     + + +  L  +V+    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  LEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119


>gi|167032462|ref|YP_001667693.1| histidine kinase [Pseudomonas putida GB-1]
 gi|166858950|gb|ABY97357.1| histidine kinase [Pseudomonas putida GB-1]
          Length = 785

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  AT   EA E   +    + +++D +M  +  +
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELL-QHDDFDLVLMDCNMPVMDGY 723

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ     ++ +  L      E+      AG N +L KPF RE L   +
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALI 777


>gi|16330974|ref|NP_441702.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653468|dbj|BAA18382.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 368

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 3/129 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    VR+    + +   + V  A           K+ LP+ ++ D  M    
Sbjct: 1   MPKILIIEDQLEVRQNIEDILSLEDYEVISAPDGETGLALA-KQHLPDLILCDVMMPRVT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +RQ P    +    L  + D      G   GA+ +L KPF  + L  A+    
Sbjct: 60  GFEVLMSLRQDPNLAVIPFILLTAKADHHAFRQGMELGADDYLTKPFTIDELLHAITTRL 119

Query: 119 QMQKSKDEN 127
                +   
Sbjct: 120 DRHYQRQAM 128


>gi|154246364|ref|YP_001417322.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160449|gb|ABS67665.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 240

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +VD    +R +        G+    A S    R   E+   P+ +V+D  M G     
Sbjct: 7   IAIVDDHRDIRDLVGKYLTQHGYRTSLADSAAALRRQLERGAAPDLVVLDVMMPGEDGLS 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R     TD+ V  L    +    I G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 67  LCRFLRS---TTDLPVILLTAMAEETDRIVGLEIGADDYVTKPFSPRELLARIKAVLRRV 123

Query: 122 KS 123
            S
Sbjct: 124 HS 125


>gi|150015084|ref|YP_001307338.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901549|gb|ABR32382.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R             VF+A    EA +  EKE   + +++D  M    
Sbjct: 1   MFNVLVVDDEKEIRDAIEIYLRGENLKVFKAEDGLEALDILEKEK-IHLIILDIMMPRFD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIRTCLKIRES-QNLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRR 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             LLL + + + +KV   +    G+ V  A +  EA    E+   P  +++D  M  V  F
Sbjct: 1482 RLLLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEAVAAHERSRYP-LILMDCQMPEVDGF 1540

Query: 63   --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               A +R+M   +    +  +              AG + ++ KP   + L+  +    
Sbjct: 1541 EATALIRKMEGRSAHTPIVAMTANAMQGDRERCLAAGMDDYIAKPVRPKELQAILDTWL 1599



 Score = 86.8 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57
              +LLVD    VR+  R      G     A S  EA E        +   +  +I+  + 
Sbjct: 1327 RRILLVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVELARTAAASQNPFDLALIELHLS 1386

Query: 58   GVLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
             +  F   A ++Q P    + +  L               G +++L KP  +  
Sbjct: 1387 DMDGFETAALLKQGPATAGIRLIILTTVGRRGDGQTARSIGIDAYLTKPLRQAQ 1440


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + +   N   +    A +  +A E  E     + +++D  +  + 
Sbjct: 1   MIKILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIE-NDSFDLILLDVMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F    +  PLG  + V +L  +      + G RAGA+ ++ KPF    L   +  + +
Sbjct: 60  GFTLLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLR 116


>gi|226356935|ref|YP_002786675.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226318925|gb|ACO46921.1| putative response regulator, SarP [Deinococcus deserti VCD115]
          Length = 344

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + K+   + +  G  V  ++   EA +   K   P+ ++ D  M  + 
Sbjct: 1   MPRILVVDDDAAILKLVSVILSRSGHEVRTSSHPVEALDLL-KVFTPDLIISDVVMPYMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LEF+  VR+    + +    L    +   +  G   GA+ +L KPF  + L  A+    
Sbjct: 60  GLEFLEKVREDEKLSALPFMLLSSHAERGDVRRGMNLGADDYLPKPFTPQELNVAIDARL 119

Query: 119 QMQKSKDENQ 128
           +      + +
Sbjct: 120 RRAGLNVQGE 129


>gi|169837195|ref|ZP_02870383.1| two-component response regulator [candidate division TM7
           single-cell isolate TM7a]
          Length = 205

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +         + V    +  +A E+       + +V D  + G+  F
Sbjct: 2   RILVVEDEQNLNDIIVKRLILEKYGVDTCFNGNDALEYIFSTEY-DVIVSDIMLPGIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L      E  + G   GA+ +L+KPF  + L   +R L + 
Sbjct: 61  EILKRIREKGIKTPVLLLTALDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRR 118


>gi|149918682|ref|ZP_01907170.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
 gi|149820523|gb|EDM79937.1| diguanylate cyclase (GGDEF domain) [Plesiocystis pacifica SIR-1]
          Length = 320

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D S + R   R+     G+ V EA    +A E   ++  P+ +++D  M     L
Sbjct: 7   KILVADDSSVERAAARNALEQAGYAVMEAVDGQQALEVFARD-RPDLVMLDVVMPRLTGL 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++    G  + V  +         + G R+GA+ +L KP++ E L   +  L + 
Sbjct: 66  ETCRILKAKAQGKYLPVIMVSTRNSVNARVEGLRSGADDYLGKPYDAEELCARVEALLRT 125

Query: 121 QKSKDENQ 128
           +K   + +
Sbjct: 126 RKVISDRE 133


>gi|126664194|ref|ZP_01735186.1| response regulator receiver domain protein [Flavobacteria bacterium
           BAL38]
 gi|126623726|gb|EAZ94422.1| response regulator receiver domain protein [Flavobacteria bacterium
           BAL38]
          Length = 120

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +     + F    + VF A    EA +  +    P+ +++D  M  V 
Sbjct: 1   MKKILIVDDEPNIVMTLEYTFKKSNYEVFIARDGQEALDILKTN-FPDIIILDIMMPMVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R+    T   V +L  +     +  G   GA+++L KPF+ + +   + EL 
Sbjct: 60  GFATLEQIRKDANLTHTKVMFLSAKNKESDIEKGLALGADAYLTKPFSIKKVVEKVEELL 119


>gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 237

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L++D    +R+         G+ V +A +  E  +    E + + +++D  +  +   
Sbjct: 14  RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDM-DLVILDIGLPDMEGH 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ    + V V  L +     + +     GAN ++ KPF  + L   +R L + 
Sbjct: 73  EVLEQLRQ---WSQVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLRT 129

Query: 121 Q 121
           +
Sbjct: 130 R 130


>gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +LLV+    +  + R      GF V              + L P   V+D ++ G    E
Sbjct: 11  VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARR-LRPVVCVLDIALPGLPGTE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R    G    V +L    D    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 70  ICRRLR--EAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRR 126


>gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFI 63
           +V+    +  + ++     G+ V  + +  E  E  +K L P+ +++D  +     +E  
Sbjct: 7   IVEDEQPIITLVKYNLEKEGYKVSSSDNGNEGIEDIKK-LFPDLVLLDWMLPDFSGVEIC 65

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             +++     ++ +  L  + + E  I G  +GA+ ++ KPF+   L   ++ L +  K
Sbjct: 66  KILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALLRRSK 124


>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           +L D    + +       + G+ V  A +  +A +   +E  P+  V+D  M  +  F  
Sbjct: 1   MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLA-REFRPHVAVLDVMMPEMNGFEV 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    ++ V  L  + D +  + G + GA+ +++KPF+   L   +    + Q
Sbjct: 60  CQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLRNQ 116


>gi|307824965|ref|ZP_07655187.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307734012|gb|EFO04867.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 659

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +     V        G+ +  A    E  +     + P+ +++D  M G+  F
Sbjct: 15  TILIVDDTPTNLGVVVESLESRGYRLVVAQDGMEGLQRA-AFVKPDLILLDVMMPGMDGF 73

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               H++      ++ V ++    + E  I G + G   ++ KP   + +   +     +
Sbjct: 74  EVCRHLKANADTAEIPVIFMTALAETEHKITGFKVGGVDYITKPMQIDEVIARVGTHLNL 133

Query: 121 QKSKDENQFLDA 132
           +  + + Q  +A
Sbjct: 134 KTMQRQLQVQNA 145


>gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 237

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+         GF+V          E       P+  ++D  + G+  
Sbjct: 4   THVLFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRAN-RPDIALLDVMVPGMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 63  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 203

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 19  HLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF--IAHVRQMPLGTDVF 76
              ++FG+   EA +  EA +  E +   +++V+D  M  +        +R+    +DV 
Sbjct: 1   MYLDNFGYEWGEAENGKEALKKLETDHY-DFVVLDIMMPEMDGLSVCKEIRK---TSDVP 56

Query: 77  VYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFLD 131
           + +L  + +    + G R GA+ +++KPF+   L   M  + +    +++ + + 
Sbjct: 57  IIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQ 111


>gi|256830761|ref|YP_003159489.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579937|gb|ACU91073.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 377

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD   +  ++   +    G+     TS  EA      E  P+ +++D  M       
Sbjct: 12  ILIVDDEPLNIRLLDIVLKKNGYRTLSCTSGPEA-RALAAEHSPDLILLDVLMPDEDGYA 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
             A ++Q    +D+ + ++    D    + G   G   F+ KPF +  +   ++   +  
Sbjct: 71  TCALLKQQSQTSDIPIIFISALTDTSSKVRGLEVGGVDFISKPFEKAEVLARVKVHLKLR 130

Query: 120 ---MQKSKDENQFLDAI 133
                  + + Q L  +
Sbjct: 131 FTYRALIEAQAQRLAQV 147


>gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
 gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D    +R + R    +  + V EA     A +    E  P   ++D  M  +   
Sbjct: 4   KILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAE-QPALCILDIMMPKIDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+    +++ V  L  +    + I G   GA+ +L KPFN       +    + 
Sbjct: 63  HVLQQIRKE---SNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRR 119


>gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 234

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +            V    S  EA E  + E   + +++D  + G+  F+
Sbjct: 8   ILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFE-RFDLIILDVMLPGIDGFV 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +   L   V V  L    D    IAG   GA+ +L KPFN +     ++ + + 
Sbjct: 67  VCKKVRELDARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRR 123


>gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
 gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
          Length = 220

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 57/130 (43%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+++   +++     L    G+ VF+A +  +  E  +K  + + +++D  M    
Sbjct: 1   MKTILIIEDDIMIQNALGELLRVSGYQVFQAYNGIDGVEKFKKNKV-DLILLDIMMPEKD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    VR+M   + V +  L    + +  +      A+ +++KP++   +   +  + 
Sbjct: 60  GFDVCREVREM---SQVPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIF 116

Query: 119 QMQKSKDENQ 128
           +     ++ +
Sbjct: 117 RRANVGNQQE 126


>gi|171059270|ref|YP_001791619.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Leptothrix cholodnii SP-6]
 gi|170776715|gb|ACB34854.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Leptothrix cholodnii SP-6]
          Length = 375

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +     V   L     + V  A S   A         P  +++D  M G+    
Sbjct: 6   ILIVDDNPENLTVLGELLRSH-YQVRAANSGPSALRLAALVPRPQLVLLDVMMPGMDGYE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R      D+ V +       E    G   GA  ++ KP     +   +R   +++
Sbjct: 65  VLRLLRADESTRDIPVIFTTSLDATEDEELGFTLGAVDYITKPLRPAIVLARVRTHLELK 124

Query: 122 KSKDENQ 128
           +++D  Q
Sbjct: 125 QARDRLQ 131


>gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R        + G  VF+A    +A    E +   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQD-IHLIIMDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|152994394|ref|YP_001339229.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinomonas sp. MWYL1]
 gi|150835318|gb|ABR69294.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinomonas sp. MWYL1]
          Length = 360

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD +     V     +D  + +  A +  +A         P+ +++D  M  +   
Sbjct: 19  TVLIVDDTPENIDVLVASLSDE-YTIKVALNGMKALSIASLSPRPDLILLDVMMPEMDGY 77

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P+  ++ + ++  + D +    G   GA  +++KP +   +R  +R     
Sbjct: 78  DVCERLKSNPVTANIPIIFVTAKHDIKDEEKGLSLGAVDYIIKPISPPIVRARVRTHL-- 135

Query: 121 QKSKDENQFLD 131
               D+N+ L 
Sbjct: 136 -ALYDQNRQLQ 145


>gi|78213360|ref|YP_382139.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78197819|gb|ABB35584.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 255

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     + LVD    +RK+      D G+ V     V +     E +  P+ +V+D  + 
Sbjct: 15  MSRDTMIWLVDDDPELRKMVGTYLIDQGYDVRSLCDVKQFEARLECQ-RPDLVVLDLMLP 73

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           G     A  R    G D+ V  L    D    I G   GA+ +L KPF    L   +  +
Sbjct: 74  GDDGLTALRRLRDAGDDLPVVMLTARADGVDRIIGLEQGADDYLAKPFLPRELTARIEAV 133

Query: 118 PQMQKS 123
            + + +
Sbjct: 134 LRRRNA 139


>gi|333007401|gb|EGK26881.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           flexneri VA-6]
          Length = 225

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R   R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRSFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|330974194|gb|EGH74260.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 229

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+       +        GF V  A +     +   ++  P+ +++D  +     
Sbjct: 4   KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + ++ VR     +D  V  +    D  + +   R GA+ +++KP+N   +   +  + +
Sbjct: 63  TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119

Query: 120 MQKSKDENQF 129
             +    N+ 
Sbjct: 120 RSQQSGNNER 129


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 9/135 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + +  R    D G+ V  A    E     +K+   + +++D  +  + 
Sbjct: 1   MSKILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRY-DLILLDIMLPKID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +++ V  +      E+ + G    A+ ++ KPF+   L   +  + 
Sbjct: 60  GFAVCELIRKE---SNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVL 116

Query: 119 QMQKS---KDENQFL 130
           +         ENQ L
Sbjct: 117 RRSGRGAKAGENQKL 131


>gi|320175885|gb|EFW50964.1| DNA-binding response regulator KdpE [Shigella dysenteriae CDC
           74-1112]
          Length = 225

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|309806615|ref|ZP_07700611.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|312870847|ref|ZP_07730952.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873582|ref|ZP_07733629.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875747|ref|ZP_07735742.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|308166920|gb|EFO69103.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|311088739|gb|EFQ47188.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090835|gb|EFQ49232.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093537|gb|EFQ51876.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 3008A-a]
          Length = 229

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      +  +    A    EA      +     +++D  M  + 
Sbjct: 1   MVKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMS 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++   ++V +  +         I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 61  GL-DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRR 119

Query: 121 QK 122
            +
Sbjct: 120 SE 121


>gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +++VD    + ++      + G+    A S  EA            +++D  M  + 
Sbjct: 1   MK-IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMT 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  ++++   +D+ +  +  +      I G   GA+ +++KPFN   +   +R L + 
Sbjct: 60  G-IDVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118

Query: 121 QKSK 124
            + K
Sbjct: 119 SQKK 122


>gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L V+    + +    +  D G+ V  A    +     E+ +  + LV+D  M G+    
Sbjct: 3   ILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIY-DLLVLDIMMPGMDGLS 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
                   G    V +L  +   E  + G  AGA+ +L+KPF  E L   +R L + Q  
Sbjct: 62  LVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQGK 121

Query: 124 KD 125
           ++
Sbjct: 122 QN 123


>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G+ V  A                +  V+D  +  +   
Sbjct: 7   RVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALA-TSTAYDAAVVDIMLPELDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     + + V +L      E  + G +AG + +L KPF    L   ++ L +   
Sbjct: 66  SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125

Query: 123 SKDENQFLDA 132
              E   L A
Sbjct: 126 RSPEATRLSA 135


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +  +++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX]
          Length = 222

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V       E  +   +    + LV+D  +  + 
Sbjct: 1   MTCVLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRA-RSGDIDLLVLDLGLPELD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G    +  L    D    + G  AGA+ ++ KPF    L   +R L + 
Sbjct: 60  GLEVARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119


>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R      GF    A    +  +    E   + +++D  + G  
Sbjct: 1   MKKILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEE-FDLILLDVMLPGKD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    ++ +  +  + +    I G   GA+ +++KPF+   L   +    
Sbjct: 60  GFKVCQEIRAV---KEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 SRYE 120


>gi|91975146|ref|YP_567805.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91681602|gb|ABE37904.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +RK+ R      G+ V EA++   A E  ++   P  +++D  +      
Sbjct: 7   KILIVDDEPPIRKLLRMGLGTQGYEVLEASNGKIALELLKQG--PALIILDLGLPDIQGH 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R       V +  L    D    +     GA+ +L KPF  + L   MR   + 
Sbjct: 65  ELLRMIRGR--NDSVPIVVLSSRGDEAGKVEALDLGADDYLTKPFGMDELLARMRAALRH 122

Query: 121 Q 121
           Q
Sbjct: 123 Q 123


>gi|67925918|ref|ZP_00519199.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
 gi|67852236|gb|EAM47714.1| Response regulator receiver [Crocosphaera watsonii WH 8501]
          Length = 157

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M ++LLV+ S   +K+   +    G+ V  A    +A E    E   + +V+D  M  + 
Sbjct: 37  MRAVLLVEDSPAQQKMISTILTKNGWQVMIAEDGIQALESI-NESSLDLIVLDIVMPKMN 95

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V +     + +      G + GA++++ KPF    L   +++L 
Sbjct: 96  GYEVCRRIKTNPKTQNVPIVMCSSKGEEFDRYWGMKQGADAYIAKPFEDVELIGTIQQLL 155

Query: 119 Q 119
           +
Sbjct: 156 R 156


>gi|329896811|ref|ZP_08271727.1| Adenylate cyclase [gamma proteobacterium IMCC3088]
 gi|328921566|gb|EGG28946.1| Adenylate cyclase [gamma proteobacterium IMCC3088]
          Length = 452

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD  +  R V   L +  G  V+ A S   A E    +   + +++D SM G+   
Sbjct: 100 SILVVDDQNDNRAVLNRLLSRVGHTVYTADSGEAALEQLSTQ-AIDVVLLDLSMPGMGGK 158

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  ++  P    + V  +    + + ++    AGA+ +L KPFN   L   +    + 
Sbjct: 159 TALTKIKADPKLRSIPVIVISGHQELDSVVECITAGADDYLFKPFNSVLLHARIAAGLER 218

Query: 121 QKSKDEN 127
           ++  D  
Sbjct: 219 KQWHDRE 225


>gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 227

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LV+    + K    L    GF V  A +  EA        L +  ++D ++    
Sbjct: 1   MTRIFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEA-SAMLAGNLFDLALVDIALPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++      + V +L    D   ++ G   GA+ ++ KPF    L   +R   
Sbjct: 60  GFTVCTEIKER---YQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAAL 116

Query: 119 QMQKSKDE 126
           + Q+   +
Sbjct: 117 RKQERAGQ 124


>gi|300866251|ref|ZP_07110963.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335770|emb|CBN56123.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 362

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++   ++R+    L +   F    A +     E   ++  P+ ++ D  M  + 
Sbjct: 1   MPKILVIEDEELIRENILELLDAEEFEALGAANGKIGVEMAAQQ-QPDLILCDVMMPELD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +A +R  PL   +   +L    +      G   GA+ ++ KP     L  A+    
Sbjct: 60  GYSVLAALRSHPLTATIPFIFLTARAEKADTRKGMELGADDYIPKPCTPAELLAAIATRL 119

Query: 119 QMQ 121
           Q Q
Sbjct: 120 QKQ 122


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  E  +  +++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|295693262|ref|YP_003601872.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031368|emb|CBL50847.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 180

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    + +V        G+ V    +  +A E   KE   + +++D  M  + 
Sbjct: 1   MK-ILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHA-KENSYDVIMLDIMMPVMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A  +    G   ++  L  + + +  + G  +GA+ +L KPF+ + L   +R   + 
Sbjct: 59  GITALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERR 118

Query: 121 Q 121
           +
Sbjct: 119 E 119


>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R +   Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 232

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL D    + ++        GF V  A     A      +   + +V+D  +  + 
Sbjct: 1   MPKLLLADDDTELCQLLHEYLTQEGFEVALAHDGATA-AKLILDHSFDLMVLDVMLPNLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++ +   + V +  L    D    I G   GA+ ++ KP N   L   +R + + 
Sbjct: 60  GF-DVLKTVRKESQVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRR 118

Query: 121 QKS 123
            ++
Sbjct: 119 TEN 121


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +           GF +++A    +A E    E   + +++D  M  + 
Sbjct: 1   MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEII-TENDIHLILMDIMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A V+      ++ +  +  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIKATVKIREE-RNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRR 118


>gi|218885321|ref|YP_002434642.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756275|gb|ACL07174.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 528

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL++D     R + R +  D G+ V EA S  E  E    +   N +++D  M G+ 
Sbjct: 1   MKRLLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHL-AQDRVNVVLLDMRMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R   +   + V  L         +   + GA  +L KP + E L   + +    
Sbjct: 60  GQETLARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDF 119

Query: 121 QKSKDENQFL 130
            +  +EN+ L
Sbjct: 120 GRLLEENENL 129


>gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL++    +R       +  G  V  A +  +  E   +E  P+ +V+D  + G+ 
Sbjct: 1   MPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGERESTD 125


>gi|182435566|ref|YP_001823285.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178464082|dbj|BAG18602.1| putative two-component system sensor kinase [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1840

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1720 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1779

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+MP    + +  L  +            GA+ ++ KP + + L   M +  
Sbjct: 1780 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1837


>gi|159184131|ref|NP_353073.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139468|gb|AAK85858.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 241

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V   T    A +       P   + D  M  + 
Sbjct: 1   MQTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARP-PQLAIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + +    + G + GA+ F+ KPF++  L   ++ + + 
Sbjct: 60  GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118

Query: 121 QKSKD 125
             S++
Sbjct: 119 ASSRE 123


>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 219

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G+ V        A +  + E   + +++D  +  +  F
Sbjct: 2   RILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEH-FDLVILDVGLPRMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   L +++ V  L      E  I G  AGA+ +L+KPF  + L+  +R L +   
Sbjct: 61  SVLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRRAS 120

Query: 123 SKD 125
            + 
Sbjct: 121 GRA 123


>gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 234

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++ +VD    +  +        G+ V    S        EK   P+ +++D  +      
Sbjct: 5   TVYVVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSE-PDIVILDIMLPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +DV +  L  + +    + G   G++ ++ KPF+   L   +R++ + 
Sbjct: 64  EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRR 120

Query: 121 QK 122
            K
Sbjct: 121 VK 122


>gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 1098

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 7/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ D   +  ++  +  +  G+ V  A    E     E     + L++D  M      
Sbjct: 694 KILIADDERVNLQLLSNHLSLQGYYVDTAKDGDEVLHKVESGNY-HLLILDMMMPRKSGY 752

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+     ++ V  L  +      +    +GAN +++KP  +  L    + L ++
Sbjct: 753 EVCQQLRKRFSLLELPVLILTAKNQEYDKVTAFDSGANDYIVKPCEKRELLSRTKTLIEL 812

Query: 121 ----QKSKDENQFLDAI 133
               +K K++ + LD +
Sbjct: 813 SLAVRKIKEQMRELDDV 829


>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 50/133 (37%), Gaps = 1/133 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++   ++ +  + L     F V    +  +  +   ++   + +++D  +  + 
Sbjct: 1   MSKILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQL-QQYPFDVVLLDLGLPMMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     L   + V  +      +  + G   GA+ +L+KP+  + L   +  L + 
Sbjct: 60  GMQVLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRR 119

Query: 121 QKSKDENQFLDAI 133
             +  + +    +
Sbjct: 120 SGALKQQKQSQTL 132


>gi|239933024|ref|ZP_04689977.1| two-component system sensory histidine kinase [Streptomyces
            ghanaensis ATCC 14672]
          Length = 1332

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +  +  +          +++D  M  +  
Sbjct: 1212 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNNPDVALVLMDVMMPELDG 1271

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R MP   ++ +  +  +           +GA+ ++ KP + + L   +R   
Sbjct: 1272 YAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1330



 Score = 34.4 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 7/61 (11%)

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA---G-ANSFLLKPFNRETLRFAMREL 117
            F+  +R       V V           +    RA   G A  FL    + + LR  +   
Sbjct: 1122 FLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGTALEFLS---SLDELRERIALH 1178

Query: 118  P 118
             
Sbjct: 1179 L 1179


>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 231

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      +  + VF+  +  EA E  +K  + +  ++D  +  V   
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  NICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPELDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHSSSEII 128


>gi|108761106|ref|YP_632371.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
           xanthus DK 1622]
 gi|108464986|gb|ABF90171.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
           xanthus DK 1622]
          Length = 450

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    VR          G  V  A    EA     ++ + + L+ D  M G+ 
Sbjct: 1   MARILVADDEEGVRSFLAEALEYEGHSVTTAADGEEAARLMARQGV-DLLLTDLRMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQ 119
                 +      DV V  L      E  +A  +AGA  FLLKP  +   LR  +    +
Sbjct: 60  GLTLLRKVREEQPDVEVVVLTAVGTVESAVAAMKAGAFDFLLKPVGSPAELRLTVARALE 119

Query: 120 MQKSKD 125
            +   +
Sbjct: 120 RRALLN 125


>gi|154246098|ref|YP_001417056.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160183|gb|ABS67399.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 261

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+VD    +RK+        GF V  A    E  E    +   +++V+D  +     
Sbjct: 27  THILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQ-RIDFVVLDLMLPDASG 85

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+    +R       + V  L    +    I G   GA+ +L KPFN   L   +R + +
Sbjct: 86  LDLCRALRNRSK---IPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLR 142

Query: 120 MQKSKD 125
              + +
Sbjct: 143 RTGAAE 148


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    +R++        GF V  A  + EA E  ++   P+ +V+D  + G    
Sbjct: 8   RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRP-PDVVVLDVMLPGADGF 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R   +  DV V +L      E  + G R G + ++ KPF+   +   ++ L + 
Sbjct: 67  EILQLLRARAV--DVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRR 124

Query: 121 QK 122
            +
Sbjct: 125 AR 126


>gi|237711729|ref|ZP_04542210.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|265753147|ref|ZP_06088716.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|229454424|gb|EEO60145.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|263236333|gb|EEZ21828.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1343

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1    MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
            M   +LLLV+ +  +R           F V  A +  EA +        + ++ D  M  
Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNH-IDLVISDIMMPV 1134

Query: 59   V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            +   E    ++       + V +L  + D E  I G + GA +++ KPF+   L+  +  
Sbjct: 1135 MNGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILS 1194

Query: 117  LPQMQKSKDE 126
            L   ++ + E
Sbjct: 1195 LLSNRRKERE 1204


>gi|190573243|ref|YP_001971088.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190011165|emb|CAQ44774.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 246

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V +A     A          + +V+D  M G     
Sbjct: 7   ILVVDDDSEIRQMLADYLQRNGLRVSQA-DGGRAMRALMDTHAVDLVVLDVMMPGEDGLS 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              ++R       V V  L    D    I G   GA+ ++ KPF+   L   +  + +  
Sbjct: 66  LCRNLRA-GKHRAVPVVLLTARDDETDRIIGLEMGADDYVTKPFSSRELLARINAVIRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 QMLPPN 130


>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
 gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
          Length = 247

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +  + R    + G+ V  A                + +V+D  + G    
Sbjct: 18  RVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGY-DAVVLDVMLPGFPGF 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R    G +V V  L      +  + G  +GA+ +L KPF+ E L   +R L + 
Sbjct: 77  ELCRRLR--ERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRR 134


>gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 249

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+   + R+         G+ V +             +   + +++D  + GV    
Sbjct: 6   ILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDS-MRKVFSQQTVDLILLDIRLPGVDGL- 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ---- 119
             +R++   ++V V  +  + D    I     GA+ ++ KPFN   L    + L +    
Sbjct: 64  QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123

Query: 120 -MQKSKDENQ 128
             + S+DENQ
Sbjct: 124 AREASEDENQ 133


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    +           G+ V       E       E   + +++D  + G+   
Sbjct: 2   RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRA-TEGPYDLVILDIMLPGMNGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R    G +V +  L  +        G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  RVCAALRA--AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +LLV+    +R+         GF V  A    E   +  +E+  +  +ID  +  +  +
Sbjct: 2   RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGL-YMGREVPFDVAIIDLGLPKMSGM 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E I  +R    G +  V  L     ++  + G + GA+ +L+KPF+ E L   +  L + 
Sbjct: 61  ELIKALR--DEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRR 118


>gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 245

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      + G+    A +  +A          + +++D  M  +   
Sbjct: 18  KILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +RQ+   + + +  L  +      I G   GA+ ++ KPFN   +   ++ L +  +
Sbjct: 78  -DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 123 SKDEN 127
           ++  N
Sbjct: 137 NQVTN 141


>gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp.
           ORS278]
 gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 8/130 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE-LLPNYLVIDESMEGVLEF 62
           LL+++    +R + R      GF V        A +        P+ +V+D  + G    
Sbjct: 7   LLIIEDDIEIRSLLRDHLAREGFRVD-VGDGGAALDRFRNTFGDPDLVVLDIMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V +  L  + D    I G   GA+ +L KPF+   L   +R + + 
Sbjct: 66  SICRRLRA---ASRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRR 122

Query: 121 QKSKD-ENQF 129
            +    EN+ 
Sbjct: 123 AEPAPLENRR 132


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  +L+V+    ++++ +       + V  A+   E      K+   + +++D  M  
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQS-FDLILLDVMMPN 59

Query: 59  VLEFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +  F     +R     ++V +  L    + E  + G   G + ++ KPF+   L   +  
Sbjct: 60  LNGFEVSKMIRSQ---SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEA 116

Query: 117 LPQMQKSKDENQFL 130
           + +    K+ N  L
Sbjct: 117 VLRRSYDKNVNNHL 130


>gi|303328169|ref|ZP_07358608.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3]
 gi|302861995|gb|EFL84930.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3]
          Length = 238

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           SLLL++ +  +           G+ +  A            E   + +V+D  + G+   
Sbjct: 4   SLLLIEDNEDILANLYAYLEPLGYELDCARHGRTGLSMAL-EGRFDCIVLDVMLPGLDGV 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++R+    + V V  L         + G  AGA+ +L+KPF  + L   +R L + 
Sbjct: 63  SLCRNLRE-EHHSAVPVLMLTARDTVADRVRGLEAGADDYLVKPFALKELEARIRALLRR 121

Query: 121 QKS 123
            + 
Sbjct: 122 GRL 124


>gi|283851785|ref|ZP_06369063.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572905|gb|EFC20887.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 310

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL + + I R   + L  + G  +  A    EA E    E   + +++D SM  +   
Sbjct: 189 KILLAEDNPINRLFLQELLRNEGHSITYAADGQEALEALRTE-AFDIVLMDISMPRMDGI 247

Query: 63  IAHVRQMPL-----GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
            A  R            + +  L             +AG + +L KP +   L+  +
Sbjct: 248 EATRRIRESVSGKINAKIPIVALTAHAFRVDAERFLKAGMDGYLSKPIDPAKLKEIL 304


>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
 gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      +  + VF+  +  EA E  +K  + +  ++D  +  V   
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  TICQKIRDKHTY---PIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 249

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    + ++      + G+ VF+A +  +     +KE   + +V+D  M G+  F
Sbjct: 22  NVLIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEK-IDLIVLDIMMPGIDGF 80

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+     ++ +  +  +      I G   GA+ +++KPFN       ++   + 
Sbjct: 81  QICMKIRKD---YNIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRR 137


>gi|158340437|ref|YP_001521793.1| response regulator receiver, CheY-like protein [Acaryochloris
           marina MBIC11017]
 gi|158310678|gb|ABW32292.1| response regulator receiver, CheY-like protein [Acaryochloris
           marina MBIC11017]
          Length = 410

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+ D       +   +    G+ +++A S  EA       +LP+ +++D +M  +   +
Sbjct: 145 ILMADDEPKNLALLTDVLEQEGYEIWQADSGAEAL-RVAGMVLPDLILLDINMPDMQGYD 203

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V ++    +    +     G + ++ KPFN   +   +    +++
Sbjct: 204 VCQQLKANAKTKLIPVIFVSALDETWDKVKAFSVGGSDYITKPFNTLEVIVRIENQLEIR 263

Query: 122 KSKDEN 127
           + +D+ 
Sbjct: 264 QIQDQM 269



 Score =  124 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 55/123 (44%), Gaps = 3/123 (2%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIA 64
           VD    +  +   +     + V++A+S  E  +   K +LP+ +++D +M  +       
Sbjct: 2   VDDQPNIMNLLTSIMEQDEYEVWQASSGAEGLQMAAK-VLPDLILLDVNMPDMDGYTVCQ 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
            ++  P  T + + ++    +    + G   G + ++ KPFN   +   + +  ++++ +
Sbjct: 61  QLKADPQTTAIPIIFVSALDETWDKVKGFSVGGSDYITKPFNTLEVIVRIEDQLKIRQIQ 120

Query: 125 DEN 127
           D+ 
Sbjct: 121 DQM 123



 Score =  122 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+VD       +   +    G+ +++A S  EA       +LP+ +++D +M  +   +
Sbjct: 291 ILMVDDEPKNLALLTDVLEHDGYEIWQADSGSEAL-RVAGMVLPDLILLDINMPDMQGYD 349

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++       + V ++    +    +     G + ++ KP     L   M+   Q+
Sbjct: 350 VCQQLKANAKTKLIPVIFVSALDETWDKVKAFSVGGSDYINKPIQIVELMARMKHQLQI 408


>gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
 gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
          Length = 1126

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           LL+ D   +  +V        G+ V  A    E  +  E+E      ++D  M G+   E
Sbjct: 721 LLVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELL-LLDVMMPGMSGYE 779

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R+    +++ +  L      +  I G  +GAN +L KPFN++ L   ++   +  
Sbjct: 780 VCQSLRETYSHSELPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLKAS 839

Query: 122 KSK---DENQFLD 131
           K++    EN  L 
Sbjct: 840 KAELFLSENDRLQ 852


>gi|89072110|ref|ZP_01158706.1| putaive two-component response regulator [Photobacterium sp. SKA34]
 gi|90580393|ref|ZP_01236199.1| putative two-component response regulator [Vibrio angustum S14]
 gi|89052211|gb|EAR57662.1| putaive two-component response regulator [Photobacterium sp. SKA34]
 gi|90438302|gb|EAS63487.1| putative two-component response regulator [Vibrio angustum S14]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +   K    + +++D  +  + 
Sbjct: 1   MKKILLVEDNREIAGIIFDFFESLGMELDFADNGELGLQLAMKNN-FDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R    G +  V  L    +   M+ G + GA+ ++ KPF+ + L   M  L + 
Sbjct: 60  GLTVCNRLRDAGNNTPVLMLTALDNKSDMLDGYKHGADDYMTKPFDLDILEARMNALVKR 119

Query: 121 QK 122
             
Sbjct: 120 YH 121


>gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 232

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   ++++D    +  +        GF    A+   E  E  E E  P  +V+D  M G+
Sbjct: 1   MKNRIIIIDDDPKLCALLEKCVTCDGFEAACASDGREGLEKLE-EGSPVLVVLDVMMPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   +R++   + V V  L    D    + G R GA+ +L KPF+       +  L +
Sbjct: 60  DGF-EVLRKIRETSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLVR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|237807962|ref|YP_002892402.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237500223|gb|ACQ92816.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 231

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++    +R+         GF VFEA ++            P+ +++D  +      
Sbjct: 7   NILIIEDEQQIRRYLGAALLSDGFKVFEADTLQRGL-IEAATRKPDLVILDLGLPDGDGN 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            FI  +RQ    + + +  L    D    +     GA+ +L+KPF    L   +R   + 
Sbjct: 66  QFIEEIRQ---WSQIPIIILSARSDERDKVKALNNGADDYLVKPFGIAELLARVRANLRR 122

Query: 121 QKSKDENQ 128
           + +  EN+
Sbjct: 123 RNADRENE 130


>gi|215433453|gb|ACJ66692.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
           fulvus HW-1]
          Length = 471

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD     R+    + N+ G+ V EA +  EA      E  P  ++ D  M  +  
Sbjct: 4   QRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARI-GEFSPAVVLTDVRMPQMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G+D     +      E  +   ++GA++FL+KP + + +   + ++ + +
Sbjct: 63  LTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLIKPLDADQVLVTLGKVLEKR 122

Query: 122 KSKDENQFL 130
             + E + L
Sbjct: 123 SLRQEAEAL 131


>gi|319951942|ref|YP_004163209.1| two component, sigma54 specific, transcriptional regulator
           [Cellulophaga algicola DSM 14237]
 gi|319420602|gb|ADV47711.1| putative two component, sigma54 specific, transcriptional regulator
           [Cellulophaga algicola DSM 14237]
          Length = 387

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+++    +R+V   + ++    + V EA    +  E  +KE   + ++ D  M  
Sbjct: 1   MSRILVIEDEAAIRRVLVKILSEESDTYTVEEAEDGLKGLEAVKKEDY-DLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  ++    +    D +  +   R GA  ++ KP +   L   +R   
Sbjct: 60  MDGVEVLEAAKKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNAL 119

Query: 119 QMQKSKDENQFLD 131
             ++   EN+ L 
Sbjct: 120 DRKELVVENKILK 132


>gi|242239998|ref|YP_002988179.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132055|gb|ACS86357.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 231

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +        ++ GF V  A     A +  + E     +V+D S+  +  F
Sbjct: 9   RLLLVEDHDELAHWLEKALSESGFAVDRAGDGMTAEQLLQLETY-TLMVLDVSLPKMDGF 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G ++ V  L    D    + G   GA+ +L KPF+   L   +R L +  +
Sbjct: 68  SVLARLRKRGQNLPVLLLTARTDVADRVRGLNLGADDYLAKPFDVAELEARLRALLRRSQ 127

Query: 123 SKDE 126
              +
Sbjct: 128 GLAQ 131


>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 227

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V        G+ V       EA          + +++D  M  +  +
Sbjct: 2   RVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEAL-LYIDGATYDIILMDIMMPKLNGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +         V +L  +   E  + G   GA+ +++KPF+ + L   +R L +   
Sbjct: 61  EVLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120

Query: 123 SKDENQFLDA 132
               N+   A
Sbjct: 121 GSVSNELRVA 130


>gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLV+    +R   +         V EA++  E  +    E  P   V+D  + G+ 
Sbjct: 1   MNKILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIEN-PKIAVLDVMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    +       + +  L  +      I G   GA+ +++KPFN   +   ++ L + 
Sbjct: 60  GFKVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRR 119

Query: 121 QKSKDENQF 129
              +D+++ 
Sbjct: 120 LGDEDKDKL 128


>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +  +        G  V  A       E  ++E  P+ +++D  M  + 
Sbjct: 1   MSKILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQE--PDLIILDIMMPKMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R   L     V +L  +      I G   G + ++ KPF    L   +    
Sbjct: 59  GFEVCQAIRDDVL---CPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANL 115

Query: 119 QMQKSK----DENQF 129
           + +K      +EN+ 
Sbjct: 116 RREKRSQYINEENKR 130


>gi|261856181|ref|YP_003263464.1| LuxR family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261836650|gb|ACX96417.1| two component transcriptional regulator, LuxR family
           [Halothiobacillus neapolitanus c2]
          Length = 292

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLVD +    +V        G+ V  +T    A +  +    P+ +++D  M G+  F
Sbjct: 10  TILLVDDAPDNLRVLHDALQQQGYRVLVSTDGQSALDSVQLMP-PDVIILDARMPGIDGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ V ++    D E ++ G +AG   ++ KP   E L   +    Q 
Sbjct: 69  ETCKRLKNDLTTRDIPVIFMTGLSDTEYIVQGFQAGGVDYVTKPVVIEELLVRITTHMQR 128

Query: 121 QKS 123
            + 
Sbjct: 129 AQL 131


>gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 227

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 15/144 (10%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++         +   +  S   A     +E     +++D  +    
Sbjct: 1   MSRILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALA-REQSFQAVLLDLMLPDGD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ    ++V +  +   VD    + G   GA+ ++ KPF+   L   ++ + 
Sbjct: 60  GMEVCKAIRQH---SNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVL 116

Query: 119 QM---------QKSKDENQFLDAI 133
           +           + + + +  +AI
Sbjct: 117 RRANPEPTEQEHELQLDEERYEAI 140


>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 224

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+    + K          +++  A       EF +     + +V+D  +  +   
Sbjct: 2   RILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQS-FEYDLIVLDVMLPKLNGI 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ   G  + V  L  +   +  + G  AGA+ +++KPF+   L   +R L + 
Sbjct: 61  NLCQRIRQ--AGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRR 118


>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETAL-EGEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|108758269|ref|YP_629388.1| sigma-54 dependent DNA-binding response regulator FrgC [Myxococcus
           xanthus DK 1622]
 gi|6578851|gb|AAF18103.1|AF204400_3 FrgC [Myxococcus xanthus]
 gi|108462149|gb|ABF87334.1| sigma-54 dependent DNA-binding response regulator FrgC [Myxococcus
           xanthus DK 1622]
          Length = 466

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLVD    V KV   L    G     A    EA      + + + +V D  M G+   
Sbjct: 8   TVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPV-DVVVSDVRMPGMDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                      DV V  L         +   +AGA  F+LKPF+RE + F +R+     +
Sbjct: 67  QVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRAQ 126

Query: 123 SKDENQF 129
            ++  Q 
Sbjct: 127 GEEARQQ 133


>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
 gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
          Length = 225

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +         F V       E       E   + +++D  +     +
Sbjct: 4   RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP-FDVVILDIMLPVHDGW 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G +  V  L    D E  + G   GA+ +L KPF+   L   +R L + + 
Sbjct: 63  EILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122

Query: 123 SKDENQF 129
                + 
Sbjct: 123 ESKSTKL 129


>gi|53713422|ref|YP_099414.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60681669|ref|YP_211813.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|253565409|ref|ZP_04842864.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265763688|ref|ZP_06092256.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52216287|dbj|BAD48880.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60493103|emb|CAH07884.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|251945688|gb|EES86095.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263256296|gb|EEZ27642.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301163212|emb|CBW22762.1| putative two component system histidine kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 375

 Score =  131 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       + + L  +  F +  A++  +A +  +KE  P+ +++D  M  +  F
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFNIVTASNGNQALDQVKKEN-PDLILLDVMMPDMSGF 69

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P    + + +L        ++ G + G N F+ KPFN+E L   +     +
Sbjct: 70  EVSQKLKADPEAAHIPIIFLTALNSTADIVKGFQVGGNDFISKPFNKEELIIRVSHQISL 129

Query: 121 QKSKD 125
             +K 
Sbjct: 130 VAAKR 134


>gi|332706441|ref|ZP_08426502.1| histidine kinase [Lyngbya majuscula 3L]
 gi|332354325|gb|EGJ33804.1| histidine kinase [Lyngbya majuscula 3L]
          Length = 357

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
           +S+L+VD       V   L    G+ +  A+   EA    EK + P+ +++D  M     
Sbjct: 5   NSILVVDDEPCGFDVIEALLFKEGYNLSYASCGQEALNGLEK-IQPDVILLDVMMPELDG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    ++  P    + +  +      E +     AGA+ FL KP +   LR  +R + +
Sbjct: 64  IEVCHRIKSHPKWHHIPIIIVTALNSKEDLARCLDAGADDFLGKPVSGIELRSRVRSMLR 123

Query: 120 MQKSKDEN 127
           ++K  DE 
Sbjct: 124 IKKQHDEL 131


>gi|319955728|ref|YP_004166995.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424388|gb|ADV51497.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 237

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +   +   F V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGIVLKDYLSMNDFDVVLAKNGMEGFEKFKKDNY-DICILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           +V + +L  +   E ++ G +AGA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124

Query: 122 KS 123
            S
Sbjct: 125 AS 126


>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
 gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
          Length = 231

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +  +      +  + VF+  +  EA E  +K  + +  ++D  +  V   
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKN-VLDLAILDIMLPDVSGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         +  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  TICQKIRDKYNY---PIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|220904043|ref|YP_002479355.1| Fis family two component sigma-54 specific transcriptional
           regulator [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868342|gb|ACL48677.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 453

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD     R++ R L  ++G+      +  EA   C +E   + +++D  M G+   
Sbjct: 8   KLLVVDDDRNHREMLRALLEEWGYAPVTVDNGEEAVALC-QESPFDLILMDVRMGGMSGI 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A          + V  +    D    +   +AGA  +L KP   + L+ A+        
Sbjct: 67  EATRAIKGYNPAIPVLIMTAYSDVANAVEALKAGAYDYLTKPLAFDALKLALERALDHAS 126

Query: 123 SKDENQFL 130
            +DE + L
Sbjct: 127 LRDEVRAL 134


>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|167840679|ref|ZP_02467363.1| DNA-binding heavy metal response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+         +    + GF+              + E   +  ++D  + G  
Sbjct: 1   MK-VLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENY-DLAILDVMLPGCD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   VR++       V +L      +  + G   G + +L KPF+   L   +R L + 
Sbjct: 59  GWTV-VRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117

Query: 121 QKSKD 125
            ++ D
Sbjct: 118 GQATD 122


>gi|124008550|ref|ZP_01693242.1| transcriptional regulatory protein RprY [Microscilla marina ATCC
           23134]
 gi|123985924|gb|EAY25781.1| transcriptional regulatory protein RprY [Microscilla marina ATCC
           23134]
          Length = 230

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 2/123 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L V+    +  V +       + V    +   A E  +++   +  + D  +  +
Sbjct: 1   MKAHILFVEDDASLALVTKDSLELRDYRVTHCANGQLALEQFQQDN-FDLCLFDVMLPQM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F    +   L  ++ + +L  +   E  IAG + GA+ ++ KPF+ E +   +    +
Sbjct: 60  DGFTLAEKVRTLNHEIPIIFLTAKAMQEDKIAGLKLGADDYITKPFSIEEVVLKIEVFLK 119

Query: 120 MQK 122
             +
Sbjct: 120 RSR 122


>gi|309389650|gb|ADO77530.1| response regulator receiver protein [Halanaerobium praevalens DSM
           2228]
          Length = 231

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R   +      G+ V  A +  +     ++E +P  +++D  M G+
Sbjct: 1   MKNKVLIVDDEKNIRLTLKTALKKAGYQVETAVNGEDGLSILKEEEIP-VILLDMKMPGM 59

Query: 60  LE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
               F+  +       +  V  +      E  +   + GA  +L KPF  E +   + ++
Sbjct: 60  DGIQFLKEIAND--NFETKVIMITGYGSVETAVETLKLGAVDYLRKPFKPEEIIGIVEDV 117

Query: 118 PQMQKSKDENQFLDA 132
            +  K ++  + +++
Sbjct: 118 FERYKVENSGEEVES 132


>gi|212695249|ref|ZP_03303377.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855]
 gi|237725832|ref|ZP_04556313.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|212662159|gb|EEB22733.1| hypothetical protein BACDOR_04789 [Bacteroides dorei DSM 17855]
 gi|229435640|gb|EEO45717.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1343

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 1    MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
            M   +LLLV+ +  +R           F V  A +  EA +        + ++ D  M  
Sbjct: 1077 MKGYTLLLVEDNESMRSFIFERLEVL-FTVETAVNGQEALDVLRSNH-IDLVISDIMMPV 1134

Query: 59   V--LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            +   E    ++       + V +L  + D E  I G + GA +++ KPF+   L+  +  
Sbjct: 1135 MNGYELCKEIKGDIDLCHIPVIFLTAKNDLESKINGLKIGAEAYVEKPFSFNYLKSQILS 1194

Query: 117  LPQMQKSKDE 126
            L   ++ + E
Sbjct: 1195 LLSNRRKERE 1204


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      + G+ V  A +  +A      E   +  V+D  +  V  F
Sbjct: 5   RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADA-ARLILEQEFDLAVLDIMLPDVDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R +       V  L         I G   GA+ +++KPF    L    +   + 
Sbjct: 64  -ELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRR 120


>gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A     ++   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC
           BAA-895]
 gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 56/130 (43%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++         +     +   +  ++  +   P+ +++D  + G    
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLQYVHQTP-PDLILLDLMLPGTDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   +DV +  +  +++    + G   GA+ ++ KP++   +   ++ + +  K
Sbjct: 71  TLC-REIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129

Query: 123 SKDENQFLDA 132
            + E Q LDA
Sbjct: 130 PQRELQQLDA 139


>gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R+  +  F   G+ + EAT+  +      +E  P+ +++D  + G+ 
Sbjct: 1   MKQILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKA-REQTPDMVILDIILPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ      + +  L         I G   GA+ +++KPFN   L      + 
Sbjct: 60  GFNVCKTLRQ--EFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAIL 117

Query: 119 QM 120
           + 
Sbjct: 118 KR 119


>gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 483

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+  R +    G +V EA +  E  E    +  P+ +++D  M  +   
Sbjct: 8   RILVVDDEERIRQAVRRVLETMGMVVMEAANGREGLERI-ADYKPDLVLVDLMMPVMDGM 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R       +    +      EK +   + GA+ FL KPF  + LR  +  + + 
Sbjct: 67  EMIGRARKSHASLAFVVITGYATLEKAVEAMKQGADDFLAKPFKPQELRLVIERVLKR 124


>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 234

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF+V  A       E    +  P+  ++D  + G+  
Sbjct: 4   THVLFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRAD-RPDIALLDVMVPGLDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 63  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|291448188|ref|ZP_06587578.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
 gi|291351135|gb|EFE78039.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
            15998]
          Length = 1819

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1699 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1758

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+MP    + +  L  +            GA+ ++ KP + + L   M +  
Sbjct: 1759 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1816


>gi|237730663|ref|ZP_04561144.1| DNA-binding transcriptional activator KdpE [Citrobacter sp. 30_2]
 gi|226906202|gb|EEH92120.1| DNA-binding transcriptional activator KdpE [Citrobacter sp. 30_2]
          Length = 225

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEADGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             S
Sbjct: 119 HAS 121


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +         + G+ V  A    E   F +     + +++D  +  +   
Sbjct: 2   RILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASY-DLIILDIMLPKIDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G    V  L  +   E  + G  AGA+ +L+KPF+ + L   +R L + 
Sbjct: 61  TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRR 118


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +  V      + G  +  A       E   K    + +++D  + G+ 
Sbjct: 1   MK-ILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHD-FDLIILDIMLSGMN 58

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     +V V  L      E +I G  +GA+ +L+KPF    L   +R L 
Sbjct: 59  GIQVCREIRK--GNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLV 116

Query: 119 QMQKSKDENQFLDAI 133
           +  K     +   +I
Sbjct: 117 RRSKVVSSPRSTQSI 131


>gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619]
 gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619]
          Length = 785

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G +V  AT   EA E  E+E   + +++D +M  +  +
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCVVQVATQGVEALERLEQED-FDLVLMDCNMPVMDGY 723

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ     ++ +  L      E+      AG N +L KPF RE L   +
Sbjct: 724 EASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALI 777


>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
 gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL++  H + ++  H     GF V  A    E     ++    + +++D  +    
Sbjct: 1   MQHILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNY-DAILLDIMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F+  +R+      V V  +  +        G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GMDFLKMIREQSK---VPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAI 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
 gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
          Length = 396

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD       +   +  +  + V  +    +A E     L+ + +++D  M      
Sbjct: 7   RILVVDDEEYNLMMLNEILREE-YDVSISLGGLDALELLASSLVVDLILLDVMMPDLDGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++     D  V ++      E    G R GA  ++ KPF    +   +R   ++
Sbjct: 66  EVCRRLKEDTRRGDTPVIFVTALSAGEDEERGLRLGAVDYITKPFKPSVVAARVRTHLRL 125

Query: 121 QKSKDENQFLDA 132
            + +   + + A
Sbjct: 126 HRQQRVLEGMVA 137


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    +           G+ V       E       E + + +++D  + G+   
Sbjct: 2   RLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMA-SEGVHDLVILDIMLPGMNGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R    G D+ +  L  +        G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  RVCAALRA--AGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 255

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  + +      G+ +  A    EA +       P+ LV+D  +  +   
Sbjct: 31  RVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANT-PDLLVLDIMLPDMDGL 89

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G      +L         + G  AG + ++ KPF+ E L   +R L + 
Sbjct: 90  GVLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRR 147


>gi|126172995|ref|YP_001049144.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153002077|ref|YP_001367758.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160876795|ref|YP_001556111.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974655|ref|YP_002359406.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410608|ref|ZP_07392226.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304701|ref|ZP_07584451.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996200|gb|ABN60275.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151366695|gb|ABS09695.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862317|gb|ABX50851.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499790|gb|ACK47983.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304351092|gb|EFM15492.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912103|gb|EFN42527.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315268997|gb|ADT95850.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 234

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    + +       D G+ V  A+    A E    E +P+ +++D  +     
Sbjct: 5   KHILVVEDDISLAEWISDYLLDHGYEVTVASQGDFALEMI-AEEIPDLVLLDVMLPVKNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     R    G    + ++   V+    I G   GA+ +L KP   + L   ++ L +
Sbjct: 64  FDVCKEARAFYAG---PILFMTACVEDGDEIRGLDVGADDYLTKPIRPQVLLARIKALLR 120

Query: 120 MQKSKDENQFL 130
               +++ Q L
Sbjct: 121 RVGDEEQKQQL 131


>gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
 gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
          Length = 231

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +RK+ R      G+ + EA +  EA      E  P+ +++D  +  +   
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEA-AALITEEKPDLILLDLGLPDISGH 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      ++ +  L    D   ++     GA+ +L KPF    L   +R      K
Sbjct: 66  DLLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVAL-RHK 124

Query: 123 SKDENQF 129
            + + + 
Sbjct: 125 LQQQGER 131


>gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 225

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    +    +   +  GF V  A+    A +  + E     L++D S+  +   
Sbjct: 2   RLLLVEDHPELLHWLQKALSSSGFAVDVASDGIVADQLLQTENY-ALLILDVSLPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              VR    G ++ V  L  + D  + + G  +GA+ +L KPF+ + L   +R L + 
Sbjct: 61  SLLVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLRR 118


>gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++  +        G+ V  A S  +A +   ++  P+ +V+D  M  +   
Sbjct: 19  RVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAA-RDFAPDAMVLDIMMPDLDGM 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G DV V +L  +      +AG  AG + ++ KPF+ E +   +R L + 
Sbjct: 78  AVLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRR 135


>gi|323138821|ref|ZP_08073885.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
 gi|322395969|gb|EFX98506.1| response regulator receiver modulated diguanylate cyclase
           [Methylocystis sp. ATCC 49242]
          Length = 457

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      K+     +   F V  AT+  EA E C ++   + +++D  M G+  F
Sbjct: 4   RVLIVDDLLPNIKLLEARLSAEYFDVVTATNGPEALELC-RDGRCDIVLLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  +         + G   GA+ FL KP +   L   +R L ++
Sbjct: 63  EVCTRLKADAATMHLPVVMVTALDQPADRVRGLECGADDFLTKPVDELALIARVRSLTRL 122

Query: 121 QKSKDENQ 128
           +   DE +
Sbjct: 123 KIMLDELR 130



 Score = 82.2 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLV-IDESMEGVLE 61
            +LLV+              D    V       EA     +      +V ++ +    L 
Sbjct: 157 RILLVEDRAGSSDRIVAALRDL-HDVEIEPHPQEALFRAAENGYELVIVSLNLTDFDALR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R +     + +  L    D  +++ G   G N ++++P +R  L   +R   + +
Sbjct: 216 LCSQLRSLERTRSIPILLLADLEDRPRILRGLDLGVNDYIVRPIDRNELVARVRTQLRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYADSLR 282


>gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1357

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM--EGVL 60
            ++++VD    +      +     + V    S  +A     +   P+ +V D  M     +
Sbjct: 1104 TVMVVDDDSNILDFLVKVL-GNDYFVISTDSGSQALNLL-RNNDPDLVVSDIMMADIDGI 1161

Query: 61   EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            E    ++     + + V  L         I G   GA++++ KPF+ + L+  +  L + 
Sbjct: 1162 ELCRRIKNDISTSHIPVILLTARTGISSKIEGFECGADAYIEKPFSPDQLKAQIFSLLR- 1220

Query: 121  QKSKDENQFLDA 132
              ++DE +   A
Sbjct: 1221 --TRDEIRRFYA 1230


>gi|288957299|ref|YP_003447640.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288909607|dbj|BAI71096.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 237

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L VD    +R++        G+ V  A     AR+  + E + + +V D  +       
Sbjct: 3   ILAVDDDEPIRELLASYLAGEGYRVTTAPDTASARQALDGEPV-DLVVCDLRLPDGDGL- 60

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             VRQ+   + + V  L  +      I G   GA+ +L KPFN   L   ++ + + 
Sbjct: 61  GLVRQIRTESQIPVIILSSKDQDVDRIVGLELGADDYLTKPFNPRELLARIKAVLRR 117


>gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
 gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
          Length = 1227

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L  D +  +R+    L +   + V       EA      E   + ++ D  M      
Sbjct: 625 RILFADDNSDLREHVVRLLSPA-YEVVAVPDGVEALRLAV-ETPFDLVLTDVMMPRLDGF 682

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R  P    V +  L       + +AG   GA+ +L KPF+ + L   +R   ++
Sbjct: 683 GLVAALRAEPATRHVPIVLLSARAGAAEEVAGLSTGADDYLTKPFSSQELVARVRANVEL 742

Query: 121 QKSKDE-NQFLDAI 133
            + + +  + L A+
Sbjct: 743 GQLRGQIIRRLRAL 756


>gi|270296880|ref|ZP_06203079.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479144|ref|ZP_07938284.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
 gi|270272867|gb|EFA18730.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904716|gb|EFV26530.1| response regulator receiver domain-containing protein [Bacteroides
           sp. 4_1_36]
          Length = 239

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +  + +       F++  A    E       +L P+ LV D  M  +  F
Sbjct: 5   TVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFF-DLRPDVLVADVMMPRMDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 64  EMVRRIRQTDKQTPVLFLTARSTINDVVEGFELGANDYLKKPFGMQELIIRIKALV 119


>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 229

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++ R       F V    S     +   +E   N +++D  +  + 
Sbjct: 1   MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDY-NLIILDIMLPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIRAV---KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|254413082|ref|ZP_05026854.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180246|gb|EDX75238.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 435

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+VD +    ++       +G+ V    +   A     K + P+ +++D  M  +    
Sbjct: 13  ILIVDDTADSLRLLEAALTRYGYEVRSTVNGSMAL-MAAKAVAPDLILLDIKMPDMNGYD 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + ++  P+  D+ + ++    +    +     G   ++ KPF  E +   +     ++
Sbjct: 72  VCSALKASPVTRDIPIIFISALDEVFDKVKAFALGGADYITKPFQFEEVLARVDHQLTIR 131

Query: 122 KSKDENQF 129
           +     + 
Sbjct: 132 QLTQGLEQ 139


>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 229

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF+         A     +E  P+ +++D  + G+
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAF-RENRPDIVLLDLMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R +   + V +  L  + D   ++ G  +GA+ +++KPF  + L   MR   +
Sbjct: 60  SGIDVA-RSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|88860455|ref|ZP_01135093.1| putative response regulator [Pseudoalteromonas tunicata D2]
 gi|88817653|gb|EAR27470.1| putative response regulator [Pseudoalteromonas tunicata D2]
          Length = 551

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD   + R +   +    G+ V    +   A +    +  P+ +++D  M      
Sbjct: 2   RILVVDDQQLNRTLLTFMLKAEGYEVESVENGQLALDIIP-DYQPDIILLDVLMPVLNGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++M     + + ++    D   +      G + FL KPF++  L   ++   + 
Sbjct: 61  EVAPKIKEMSQDVYLPIIFITALDDQNSLQRCLEVGGDDFLSKPFDKVILSAKIKAHSRT 120

Query: 121 QKSKD----ENQFLD 131
           ++       +NQ L+
Sbjct: 121 RELSKKAYQQNQLLE 135


>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 246

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF V  A     A +  E    P+ LV+D  + G   
Sbjct: 20  RRILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEA-WQPDLLVLDVMLPGFDG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    D   M+ G   GA+ ++ KPF+   +   +  L +
Sbjct: 79  LEVCRRVQAR---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLR 135

Query: 120 MQKSKD 125
             +   
Sbjct: 136 RVERAA 141


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+    +      +     + V       +  E+ +     + +++D  +  +   
Sbjct: 2   RILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSY-DLVLLDIELPLLDGI 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L    + +  + G  AGA+ +++KP +   L   +R L + 
Sbjct: 61  SLCHQLRSH--NFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118



 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +++VD    +    + L   +G          +  +  E    P+ LV+D  M     
Sbjct: 496 TRVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSH-PDLLVLDIEMPHLNG 554

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR  P    + V ++  + D +      +AGA+ +L KPF    L   +    +
Sbjct: 555 IELCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLK 614

Query: 120 MQKSKD 125
             ++  
Sbjct: 615 RTQNLA 620



 Score = 41.3 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 70  PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK----- 124
                +       + D  K +   R G ++FL KP   E     +R++ +   +      
Sbjct: 440 QQNPPIPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVIRDVFRQHYAINTRVM 499

Query: 125 ---DENQFLDAI 133
              D+ Q L AI
Sbjct: 500 IVDDDPQMLAAI 511


>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ VF+A+   EA E  E+E + N +V+D  M  +  
Sbjct: 3   NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R     + + +  L  +V+    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  LEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119


>gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +     +   + V  A     A E C  +  P+ +V+D ++     F
Sbjct: 5   KILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALE-CFDQFSPDLVVLDVNLPDTTGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I   ++M   T VF+  L         I G   GA+ ++ KPF    L   +R + + Q+
Sbjct: 64  ILC-QEMQSRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQR 122

Query: 123 SKDENQ 128
           S  +++
Sbjct: 123 SVADSE 128


>gi|18309439|ref|NP_561373.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144115|dbj|BAB80163.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 234

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE + +  V+D  M  +   
Sbjct: 5   NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEV-HLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|291441377|ref|ZP_06580767.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291344272|gb|EFE71228.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1334

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    GF V  A +  +  +          +++D  M  +  
Sbjct: 1214 RTILVVDDDARNLFALSGILELHGFRVLHAENGRKGIDQLVNNPDVALVLMDVMMPELDG 1273

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R MP   ++ +  +  +           +GA+ ++ KP + + L   +R   
Sbjct: 1274 YAATAEIRSMPRYAELPIIAVTAKAMPGDREKSLASGASDYVTKPVDTQDLIACVRRWL 1332



 Score = 34.0 bits (78), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 7/61 (11%)

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA---G-ANSFLLKPFNRETLRFAMREL 117
            F+  +R       V V           +    RA   G A  FL    + + LR  +   
Sbjct: 1124 FLEALRGDSALASVPVLVHSGHRADAAVEEALRARTEGTALEFLS---SLDELRERIALH 1180

Query: 118  P 118
             
Sbjct: 1181 L 1181


>gi|258620439|ref|ZP_05715477.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
 gi|258587318|gb|EEW12029.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
          Length = 228

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  +   +    GF + EA                + +++D  M  + 
Sbjct: 1   MAHILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAV--TDQIDLILLDVMMPKLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 59  GMETLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKS 123
            ++
Sbjct: 118 TQN 120


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G++V       +  E   +    + +++D  + G  
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSY-DLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GLEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDE 126
           + +++ ++
Sbjct: 117 RREENTEQ 124


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L++D    +  + +              +  +  +  +++     +V+D  M G+ 
Sbjct: 1   MNKILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEY-QLVVLDVMMPGMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   + ++     + +     + D    + G RAGA+ +L KPF+ + L   +  L + 
Sbjct: 60  GF-ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118


>gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 252

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R +      DFG    +A +  E       E   + +V+D  +      
Sbjct: 22  RILVVDDDSQIRSLLCDCLADFGMTTAQAGTGAE-MHLALGEGGFDLVVLDLMLPDDDGL 80

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +++ +  L    +    I G   GA+ +++KPF    L   ++ + + 
Sbjct: 81  NLCREIRA---TSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRR 137

Query: 121 QKSKDENQ 128
            +++ + +
Sbjct: 138 VRAQTQGR 145


>gi|54302690|ref|YP_132683.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9]
 gi|46916114|emb|CAG22883.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9]
          Length = 617

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+ S   + + + +    GF V  A +  EA    E     + +++D  M  +  F
Sbjct: 490 TILLVEDSPSNQMIAKAILAKNGFNVVTANNGKEAVAALENTNY-DLILMDLQMPEMNGF 548

Query: 63  --IAHVRQMPLGT-DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R +     D+ +  +   V  +  +     G + FL KP N+  +   +     
Sbjct: 549 EACTCIRNLHNNKSDIPIIAMTANVSQQDQVQCFSVGMDDFLTKPINKIKMLEVLHHWLG 608

Query: 120 MQKSKD 125
              S  
Sbjct: 609 RSHSHK 614


>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 225

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +         D  ++V  A      +E  E     + +++D  +  +   
Sbjct: 2   RILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVES-FSYDLILLDVMLPKMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G    +  L         I G  AGA+ +L+KPF+   L   +R L + 
Sbjct: 61  TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRR 118


>gi|298481877|ref|ZP_07000067.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|298272099|gb|EFI13670.1| DNA-binding response regulator [Bacteroides sp. D22]
          Length = 229

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + +++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKMDISSY--HLILLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+++    +R+       D G+   EA     A E    E  P+  +ID ++  +    
Sbjct: 3   VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFV-EHKPDLAIIDINLPKMSGLN 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +R     + + +  +      E  + G   GA+ ++ KPFN   L   ++ L 
Sbjct: 62  VCKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115


>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +    +     F ++   AT   +A          + L++D  +  +  F
Sbjct: 2   RILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPY-DLLILDVMLPSLDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + + +L    + +  + G   G + +L+KPF    L   +R L + +K
Sbjct: 61  EVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRREK 120

Query: 123 S 123
           S
Sbjct: 121 S 121


>gi|297621789|ref|YP_003709926.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila
           WSU 86-1044]
 gi|297377090|gb|ADI38920.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila
           WSU 86-1044]
          Length = 461

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D   I+R       +  GF V  A +  +      K+   + +  D  M  +   
Sbjct: 5   KILVIDDEEIIRTFIAETLSREGFEVSTAENGKKGIGQF-KDCSYDLVFTDMKMPDLTGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +   +     V  +      E  +   R GA ++L+KPF+ +T+   + +  + Q 
Sbjct: 64  EVLTKIKEVSPQTPVVVITAYGSIENAVEAMRYGAFNYLIKPFSPDTIEAVVEKAKEHQS 123

Query: 123 SKDENQFLDA 132
              ENQ+L  
Sbjct: 124 LITENQYLRE 133


>gi|295134954|ref|YP_003585630.1| response regulatory protein, sigma 54 related protein [Zunongwangia
           profunda SM-A87]
 gi|294982969|gb|ADF53434.1| response regulatory protein, sigma 54 related protein [Zunongwangia
           profunda SM-A87]
          Length = 388

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDF--GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +LL++    +R+V   + N+    + V EA       E  +KE   + ++ D  M  
Sbjct: 1   MSKILLIEDEAAIRRVLVKILNEENKDYNVTEAEDGLAGMELIKKEDY-DLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  ++    +    D +  +   R GA  ++ KP +   L  A+R   
Sbjct: 60  MDGVEVLEATSKIKPEIPFVMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLNAVRNAL 119

Query: 119 QMQKSKDENQFLD 131
             ++   EN  L 
Sbjct: 120 DRKQLVQENARLK 132


>gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
 gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           SLLL++    +R          G  V  A S  +  +   +E  P+ +V+D  + G+  F
Sbjct: 9   SLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLL-REQRPDLIVLDVMLPGIDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + + 
Sbjct: 68  EVCRRIR---RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124

Query: 121 QKSKDEN 127
            + +  +
Sbjct: 125 GERESSD 131


>gi|239944730|ref|ZP_04696667.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 15998]
 gi|239991194|ref|ZP_04711858.1| putative two-component system sensor kinase [Streptomyces roseosporus
            NRRL 11379]
          Length = 1809

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1689 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1748

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+MP    + +  L  +            GA+ ++ KP + + L   M +  
Sbjct: 1749 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1806


>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA          + +++D  M     
Sbjct: 4   RNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLH-QIDLMILDIMMPKRNG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 63  LEVCQQVREE---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLR 119

Query: 120 MQKSKD 125
               + 
Sbjct: 120 RSSFQQ 125


>gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 227

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 4/124 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+LLV+    +           G++V  A           K    + L++D  + G+  F
Sbjct: 4   SILLVEDHKELAATTGEYLEACGYIVDYAMDGISGLNLA-KNNQYDALILDVMLPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +RQ    +D+ +  L         + G  AGA+ +L+KPF+ E L   +  + + 
Sbjct: 63  TICQRIRQ-EAQSDIPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAIIRR 121

Query: 121 QKSK 124
            K +
Sbjct: 122 HKGE 125


>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 219

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    + +  R       + V        A      E      V+D  +  +   
Sbjct: 2   RILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHED-FALAVLDLGLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       V V  L         IAG  AGA+ +L+KPF+ + L+  +R L +   
Sbjct: 61  QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120

Query: 123 SKDE 126
           ++ +
Sbjct: 121 NRAQ 124


>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
 gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
          Length = 223

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++LL++    V    R      G+ V  A +  +  E   +    + +++D  + G    
Sbjct: 2   NILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNY-DVVLLDLMLPGIQGQ 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +   +  L      E+ + G + GA+ +L KPF+ + L   +  L + 
Sbjct: 61  GVCRKLRARK--SKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRR 118


>gi|146342861|ref|YP_001207909.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146195667|emb|CAL79694.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 243

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 2/130 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LLLVD    +R +        G+ V  A S  +AR      L  + L++D  M G   F 
Sbjct: 23  LLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKL-TGLHFDLLILDVMMPGESGFD 81

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R +   + V +  L    + E  I G + GA+ ++ KPF    L   +  + +    
Sbjct: 82  LA-RSIRTQSSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKRAAP 140

Query: 124 KDENQFLDAI 133
               + ++ I
Sbjct: 141 PPAEEVVEQI 150


>gi|86606312|ref|YP_475075.1| sensor histidine kinase/response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86554854|gb|ABC99812.1| sensor histidine kinase/response regulator [Synechococcus sp.
           JA-3-3Ab]
          Length = 409

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+ D     R + R+     G+ + EA S     E   +   P+ +++D  M  +  F 
Sbjct: 29  LLIADDDPSQRLLTRYALEREGYQLVEADSGLACLEAASR-YQPDMVLLDAVMPDLDGFE 87

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ---- 119
              R      D+ +  +    D   +     AGA+ ++ KP +   L+  +R L Q    
Sbjct: 88  CCRRLHAQNPDLPILIVTALEDETFVNEAFAAGASDYIPKPIHWSVLKRRLRHLLQANQA 147

Query: 120 MQKSKDENQFLDA 132
            ++ +  NQ L+A
Sbjct: 148 QRRLQQLNQELEA 160


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +          L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|330812291|ref|YP_004356753.1| response regulator, PleD/VieA family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380399|gb|AEA71749.1| putative response regulator, PleD/VieA family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 707

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD         R L     + V  A+S  EA      E   + +++D  M  +  F 
Sbjct: 15  LLIVDDYPENLLSMRALLQRQDWQVMTASSGVEALNLLL-EHDIDLVLLDVQMPDMDGFE 73

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R         + +L      +  +  G  +GA  +L KPF+ + L+  ++ L + 
Sbjct: 74  VARLMRGSQRTRLTPIIFLTANEQSQDAVIKGYASGAVDYLFKPFDPQILKPKVQALLEH 133

Query: 121 QKSKDENQFLD 131
           Q+++   Q L 
Sbjct: 134 QRNRRALQRLS 144


>gi|325298928|ref|YP_004258845.1| histidine kinase [Bacteroides salanitronis DSM 18170]
 gi|324318481|gb|ADY36372.1| histidine kinase [Bacteroides salanitronis DSM 18170]
          Length = 1469

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
            LLV+ +  +R   R +F    F + EA++  E  +  +K  +P+ ++ D  M G      
Sbjct: 1209 LLVEDNLELRAFLRSIFKAQ-FQIIEASNGTEGIDKAKKH-IPDIIISDIMMPGQDGIAL 1266

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +R     + + +  L  + D +  + G   G +S++ KPF+   L+  +  L   ++
Sbjct: 1267 TKELRHDVATSHIPIVLLTAKTDMDSKLQGMELGIDSYITKPFSAIYLKARVDNLLARRQ 1326

Query: 123  SKDE 126
               +
Sbjct: 1327 RLRQ 1330


>gi|288940945|ref|YP_003443185.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Allochromatium vinosum DSM 180]
 gi|288896317|gb|ADC62153.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Allochromatium vinosum DSM 180]
          Length = 372

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD S     V   L     + V  ATS  +A    +    P+ +++D  M  +  +
Sbjct: 7   TILIVDDSPENLAVLSELLQT-DYRVRAATSGDKALRVVKTAPKPDLILLDVMMPEMDGY 65

Query: 63  IA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R      D+ V ++      E  I G   GA  ++ KP     LR  +    ++
Sbjct: 66  EVFSRLRADSETRDIPVIFVTAMDSTEAEIRGLDVGAVDYIAKPIVPPILRARVHTQLEL 125

Query: 121 QKSKD 125
           ++++D
Sbjct: 126 KQARD 130


>gi|260223381|emb|CBA33890.1| hypothetical protein Csp_B21300 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 403

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 9/139 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD S  VR++   +    GF+V EA    E  +   +E  P+ ++ D  M  +   
Sbjct: 21  TILVVDDSVSVRQLTASVLRREGFVVLEAGDGREGLDTALRE-QPDVILCDIHMPVLDGW 79

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +   R         V  L  + D   +     AGA+ +L KP+ +  L  A+  L + 
Sbjct: 80  DLVREARSSESLGTTPVLMLTSDNDRVSVRRAMAAGADDYLTKPWTQAELLSAVTSLLEK 139

Query: 121 QKS------KDENQFLDAI 133
                    + + Q   A+
Sbjct: 140 ANRYKADADRAQEQLRSAV 158


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    + ++         + V  A                + +++D  + G+   
Sbjct: 4   NILVIEDQEEINELIALNLETLNYTVTRALDGDIGLN-LSLNTRFDLIILDVMLPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G    +  L  +      + G   GA+ +L KPF+   L+  +R L + 
Sbjct: 63  QICQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRR 120


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++ +  + +V ++     G+ V  A           +E  P+ +++D  +     
Sbjct: 3   QRILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSA-RENTPDLVILDLGLPDFDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++   + V +  L      ++ +    AGA+ ++ KPF+ E L   ++   + Q
Sbjct: 62  AEVA-RRLRKTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQ 120

Query: 122 K 122
           +
Sbjct: 121 Q 121


>gi|298208224|ref|YP_003716403.1| two component, sigma54 specific, transcriptional regulator, Fis
           family protein [Croceibacter atlanticus HTCC2559]
 gi|83848145|gb|EAP86015.1| two component, sigma54 specific, transcriptional regulator, Fis
           family protein [Croceibacter atlanticus HTCC2559]
          Length = 388

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+++    +R+V   + ++    + V EA       E   K+   + ++ D  M  
Sbjct: 1   MPKILIIEDEAAIRRVLTKILSEENDTYEVQEAEDGLSGIELI-KDNDFDLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  +  +  +    D +  +   R GA  ++ KP +   L   +R   
Sbjct: 60  MDGVEVLEAAKKIKPETPIVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRIAL 119

Query: 119 QMQKSKDENQFLD 131
             ++   EN+ L 
Sbjct: 120 DRKELVVENKRLK 132


>gi|313204235|ref|YP_004042892.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
 gi|312443551|gb|ADQ79907.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
          Length = 229

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G++V  A S  EA +      + N L++D  M  V  F
Sbjct: 5   RILVVDDEEDLCEILQFNLETEGYLVDVAYSAEEALKK--DISIYNLLLLDVMMGEVSGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+ P   ++ + +L  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMARILRENPKMANIPIIFLTAKDSETDRLTGFNIGADDYISKPFSIREVLARVKAVIRR 122


>gi|301064766|ref|ZP_07205146.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2]
 gi|300441141|gb|EFK05526.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2]
          Length = 453

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+     R++ R    D G+ V  A    +A     +E   + ++ D  M G+   
Sbjct: 5   NILVVEDGKSQREMLRDFLKDEGYPVTAAEDGKDALSRL-QEDCFDLVLTDYKMPGMDGM 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   L  +V V  +      E  +   +AGA  ++ KP + + L+  +  +   + 
Sbjct: 64  ALLKAGKELNPEVDVVVMTAFGTVETAVNAMKAGAADYISKPIDLDELQLIIERIAGRRT 123

Query: 123 SKDENQFLD 131
              EN+ L 
Sbjct: 124 IVRENRLLK 132


>gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+++    +R+       D G+   EA     A E  E E  P+  +ID ++  +    
Sbjct: 3   VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFE-EHKPDLAIIDLNLPKMSGLD 61

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +R     + + +  +      E  + G   GA+ ++ KPFN   L   ++ L 
Sbjct: 62  VCKAIR---TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115


>gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1778

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1658 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 1717

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 1718 ATTTAIRRMPQFAGLPIIALTAKAMKGDREKAIGSGASDYVTKPVDPDHLLSVMEQWMR 1776


>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 227

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD    + ++   +    GF          A +    +  P+ +++D  + G    
Sbjct: 4   RVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTF-HDTQPDLVLLDLMLPGKDGT 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V +  L  + D   ++AG  AGA+ ++ KPF  + L   +R   + 
Sbjct: 63  VVCREIRRESG---VPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRR 119

Query: 121 QK 122
            +
Sbjct: 120 VE 121


>gi|291326456|ref|ZP_06124598.2| KDP operon transcriptional regulatory protein KdpE [Providencia
           rettgeri DSM 1131]
 gi|291314289|gb|EFE54742.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rettgeri DSM 1131]
          Length = 239

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    +R+  R      G+ VFEA +             P+ L++D  +       
Sbjct: 18  ILVIEDEKEIRRFVRLALEGEGWKVFEAENYHRGL-IESGTRQPDLLILDLGLPDGDGL- 75

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +R +   + + +  L    +  + +A   AGA+ +L KPF    L   +R   + 
Sbjct: 76  DLIRDLRQWSSIPIIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRR 132


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESM 56
             ++L+V+           +    G  V  A +  EA E  E+     E   + +++D  M
Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071

Query: 57   EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +  F  +A +R+ P    + +  L  +   +       AGAN ++ KP + E L   +
Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131

Query: 115  R 115
            R
Sbjct: 1132 R 1132



 Score = 91.4 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++      ++   L ++ GF    A++  +       E  P+ +V+D ++     L
Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAAL-EYGPSAVVLDMNLPDFSGL 803

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +  +++ P    + V+ + +    + M      GA  + LKP  RE L  A+
Sbjct: 804 GVLDQLKRNPATRHIPVHVVSV---ADYMQEAMERGAIGYALKPVKREELEQAL 854



 Score = 75.6 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+     R+   HL    G  +  A +  +A +   K    + +V+D  +    
Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLL-KGSTFDCVVMDLHLPDLN 923

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94
             E +  + +    +   V                R
Sbjct: 924 GYELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959


>gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEG-- 58
            +LLV+    +R          GF V        A +F   +     + +++D  + G  
Sbjct: 13  RILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         +  L  + +    + G   GA+ +L KPF    L    R L 
Sbjct: 73  GLELCRKIRNDEDY--TPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALI 130

Query: 119 QMQKSKDE 126
           +  K   +
Sbjct: 131 RRSKRNKK 138


>gi|116750232|ref|YP_846919.1| two component sigma54 specific Fis family transcriptional regulator
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699296|gb|ABK18484.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Syntrophobacter fumaroxidans MPOB]
          Length = 450

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   IVR+     F   G+    A     A E        + + +D  M  V  F
Sbjct: 6   KVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMV-AGKDYDLVFLDIKMPDVSGF 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         V  +      E  +   + GA+ +L+KPF+ + L   +  L Q +K
Sbjct: 65  EVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQKK 124

Query: 123 SKDENQFLDA 132
             DEN  L  
Sbjct: 125 IVDENAMLRE 134


>gi|284048297|ref|YP_003398636.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952518|gb|ADB47321.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 226

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    +      +    G  V        A +   + +  + ++ D  M    
Sbjct: 1   MK-VLLAEDEKAMSMALCAVLEHSGCQVDPVYDGQAAVDKARQNIY-DAMIFDIMMPVKD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A       G    V  L  + + +  I G  AGA+ +L KPF    L   +R L + 
Sbjct: 59  GITALTELRQEGDRTPVIMLTAKAEVDDRITGLDAGADDYLTKPFAMGELLARLRSLTRR 118

Query: 121 QKSKDEN 127
           Q+  + N
Sbjct: 119 QEDFNRN 125


>gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1798

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +    G  V  A +  E  E  E+      +++D  M  +  
Sbjct: 1676 QKVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDG 1735

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                + +R+MP    + +  L  +           +GA+ ++ KP + + L   M 
Sbjct: 1736 YATTSAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLAVME 1791


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +  R    + G++V  A       E        + +V+D  +  +   
Sbjct: 2   RILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDY-DLIVLDVLLPELDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G    V  L      +  + G  AGA+ +L+KPF+   L   +R L + 
Sbjct: 61  SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRR 118


>gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19]
 gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19]
          Length = 226

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    + +  +   +D G++V  A    EA  F       + +++D  +  +   
Sbjct: 2   RILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEA-HFLGDTEPYDCIILDLGLPKIDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    V  L     +   ++G  AGA+ +L KPF+ E L   +R L +   
Sbjct: 61  SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 123 SKDE 126
              +
Sbjct: 121 GHAQ 124


>gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 224

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+       +   +    G+ V  A +   A E  + E   + ++ D  M    
Sbjct: 1   MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSE-QFDLVLSDIMMPQVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +F   +R+      + + ++    D      G  +G + +++KP N   L   ++ L 
Sbjct: 60  GYQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALL 117

Query: 119 QMQKSKDEN 127
           +  K   +N
Sbjct: 118 RRAKITADN 126


>gi|326776200|ref|ZP_08235465.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
 gi|326656533|gb|EGE41379.1| GAF sensor hybrid histidine kinase [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1821

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1701 KVLIVDDDIRNVFALTSVLEQHGLAVLYAENGREGIEVLEQHDDVTVVLMDIMMPEMDGY 1760

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+MP    + +  L  +            GA+ ++ KP + + L   M +  
Sbjct: 1761 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDPDHLLAVMEQWM 1818


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +    + K+         + V        A ++       + +++D  M     L
Sbjct: 2   RILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYL-AGAEYDVVILDIMMPKKDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ      V V  L  +   E  + G  AGAN +L+KPF  E L   +R L + 
Sbjct: 61  SVLREIRQ--KNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118

Query: 121 QKSKD 125
            +  +
Sbjct: 119 PEKSE 123


>gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 234

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++ +VD    +  +        G+ V    +     E   K   P+ +++D  +      
Sbjct: 5   TVYVVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSE-PDIVILDIMLPDIDGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    +DV +  L  + +    + G   G++ ++ KPF+   L   ++++ + 
Sbjct: 64  EICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
 gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
          Length = 227

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LL +    +      L     + V        A     +  + +  ++D  M  +  F
Sbjct: 2   RILLAEDEKRMAAAIVALLKQEKYDVDHMADGVSAL-LALESNMYDIAILDVMMPKMNGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + +  L  +   +  + G   GA+ +L KPF+   L   +R L +   
Sbjct: 61  EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGRRSS 120

Query: 123 S 123
           +
Sbjct: 121 N 121


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + +         G+ V +A       +    E   + +V+D  +  +  
Sbjct: 3   RKILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHA-DLIVLDVMLPRLNG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R    G +V +  L         ++G  AGA+ ++ KPF  E L   +R   + +
Sbjct: 62  LEVLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRK 121

Query: 122 KSKDEN 127
            +  + 
Sbjct: 122 STDRQE 127


>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
 gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +    R    + G+ V  A    +A    E+E   + +++D  +  +   
Sbjct: 2   RILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPY-DAVILDLGLPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R       V V  L     + + + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  SVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRR 118


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LL+++    + +  +    +  F V  A       E        +  +ID  +     +
Sbjct: 2   RLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDY-DLCLIDWMLPKLSGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+   G+ V V +L      + ++ G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 61  EVCRQLRK--AGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQ 118


>gi|118579804|ref|YP_901054.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
 gi|118502514|gb|ABK98996.1| response regulator receiver modulated diguanylate cyclase
           [Pelobacter propionicus DSM 2379]
          Length = 454

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 1/133 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+     R +   L    G+ V  A+S  E  +        + +V D  M GV 
Sbjct: 1   MRRILVVEDDRFFRDLFYDLLVGQGYDVDRASSGEEGLDRL-STYAFDLVVTDLVMPGVD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         V  +    + E  I   + GA  + +KP N +    ++ +  + 
Sbjct: 60  GMDILARARENDPSADVIMVTGNANLESAIFALKHGARDYFVKPINPDEFLHSVAQCLEQ 119

Query: 121 QKSKDENQFLDAI 133
           ++  DEN+ L ++
Sbjct: 120 RRILDENEELKSM 132


>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 222

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    +    +    +  F V  A       +        + +++D  + G   +
Sbjct: 2   RILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEY-DLMIVDWMIPGISGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+   G+ V + +L  +   E ++ G  AGAN ++ KPF  E L   +R   + 
Sbjct: 61  EVCRQVRK--AGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRR 118


>gi|323191046|gb|EFZ76311.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli RN587/1]
          Length = 225

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 238

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
             +LL+D    + K+   +    GF  +F+A +  E  + C+ E  P+ +V+D  M  + 
Sbjct: 8   RKILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEK-PDIVVLDIMMPDMD 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + +   + V V +L  + D    I     GA+ ++ KPF+ + + F ++   + 
Sbjct: 67  GFEVC-KNIRNFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRR 125


>gi|284039451|ref|YP_003389381.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283818744|gb|ADB40582.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 663

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +++V+ +  +R        +  + V  A S        + E LP+ ++ D  M G+    
Sbjct: 416 VVVVEDNDELRTFLAEELTNH-YRVLTAASGERGWTMIQTE-LPDVVISDVMMPGMDGYA 473

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P    + V  L  +   +  +AG + GA+ +L KPF  E L   +R L   Q
Sbjct: 474 LTQLIKTTPATDHIAVILLTAKAASDSRLAGLQQGADDYLTKPFVIEELVLRLRNLLARQ 533

Query: 122 KSKD 125
           +   
Sbjct: 534 QRLR 537



 Score = 94.9 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)

Query: 2   DSLLLVDSSHIV--RKVGRHLFN-DFG-FMVFEATSVCEAREFCEKELLPNYLVIDESME 57
             +L++D    +    + R       G +    A    EA    + E   + L++D +M 
Sbjct: 3   TKILVIDDEPDIEPLLLQRFWLTIREGIYQFKFARGGYEAISLIKAEPDYDVLLVDINMR 62

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +           L  +     +    D + +      GA  F+ KP N + L   + + 
Sbjct: 63  DMDGLTLLSYLPDLLPNGRAVMVSAYGDMDNIRTAMNRGAFDFVCKPINFKDLELTVEKT 122

Query: 118 PQMQKSKDENQF 129
            +      E+  
Sbjct: 123 ARHVHQLRESAR 134


>gi|329962208|ref|ZP_08300214.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328530316|gb|EGF57193.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1352

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+VD +       +   + + F V  A+    A +     L+P+ +V D  M  +    
Sbjct: 1106 VLIVDDNEDFIAFMKDSLSLY-FSVQSASDGAAAWKMIP-GLMPDLVVSDLMMPEMDGNE 1163

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                V+      ++    L  +   E  + G   GA+ ++ KPFN E L   MR+L  + 
Sbjct: 1164 LCRLVKTDKCTRNIPFILLTAKQSVENKVEGLTIGADDYVTKPFNMEVLILRMRKLIDLS 1223

Query: 122  KSKDENQFLD 131
                    +D
Sbjct: 1224 SRSKLRTRID 1233


>gi|329955010|ref|ZP_08295991.1| putative transcriptional regulatory protein RprY [Bacteroides
           clarus YIT 12056]
 gi|328526300|gb|EGF53315.1| putative transcriptional regulatory protein RprY [Bacteroides
           clarus YIT 12056]
          Length = 238

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +  + +       F +  A    E       +L P+ LV D  M  +  F
Sbjct: 5   KVLLVEDEETLAMIIKDTLEGQNFTIHTAADGEEGLRRFF-DLRPDVLVADVMMPRMDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V +L        ++ G   GAN +L KPF  + L   ++ L   
Sbjct: 64  EMVRRIRQTDKHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALAGR 121


>gi|302392131|ref|YP_003827951.1| response regulator receiver protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204208|gb|ADL12886.1| response regulator receiver protein [Acetohalobium arabaticum DSM
           5501]
          Length = 119

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+ +  +  V R    + G+ V   ++  +A E    E  P+ +++D  +  + 
Sbjct: 1   MNKILVVEDNKNIITVLRICLQNAGYEVKTVSNGVKAVETAF-EWKPDLILLDIKIPKMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     ++   +  +  +  L  + + E +      GA  ++ KP   + L   + +  
Sbjct: 60  GFLVCETLKDEEVTANTPIIMLSAKAEEENIKKAYNLGAEGYITKPIEPKRLLAEIDKYL 119


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD + + +KV   +    G+ V  A +  EA     +   P  + +D  M  +  
Sbjct: 815 QRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVCRHQYP-LVFMDCQMPELDG 873

Query: 62  F--IAHVRQMP-LGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R     GT + +  +             +AG + F+ KP   + LR  +    
Sbjct: 874 LETTRLIRSQEQAGTHLPIIAMTANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWL 933



 Score = 90.6 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESME 57
             + LVD +   R + ++  + +      A     A              +  +ID  M 
Sbjct: 666 RRVCLVDDNPTNRSLLQYHVSGWNMHHESAVDAPSALALLRQAAADGTPFDLAIIDIHMP 725

Query: 58  --GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
             G L+    +++ P      +  L         IA   AGA+++L KP     L   +R
Sbjct: 726 DIGGLQLCRLIKEDPAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIR 785

Query: 116 ELPQMQKSKD 125
            +   + S +
Sbjct: 786 LILGRKDSDE 795


>gi|296125343|ref|YP_003632595.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Brachyspira murdochii DSM 12563]
 gi|296017159|gb|ADG70396.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Brachyspira murdochii DSM 12563]
          Length = 444

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L++D    +R   +      G+ V  A +  +  E   K    + ++ D  M    
Sbjct: 1   MPKILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIETVYKGG-IDLVITDLKMPEKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             EF+  +  +     + V  L    + E  +   R GA  F+ KPFN + +   +    
Sbjct: 60  GEEFLKDI--LEFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARAL 117

Query: 119 QMQKSKDENQFLD 131
           + +  K  N+ L+
Sbjct: 118 ESKNIKKTNETLE 130


>gi|225386432|ref|ZP_03756196.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme
           DSM 15981]
 gi|225047463|gb|EEG57709.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme
           DSM 15981]
          Length = 121

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++         +         EA      +  PN +++D  + G+  
Sbjct: 5   QRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFP-DFKPNLVLLDLMLPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V +  L  + +    + G   GA+ +++KPF+ + L   ++ + +
Sbjct: 64  YQVCRELR---TSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|198276323|ref|ZP_03208854.1| hypothetical protein BACPLE_02518 [Bacteroides plebeius DSM 17135]
 gi|198270765|gb|EDY95035.1| hypothetical protein BACPLE_02518 [Bacteroides plebeius DSM 17135]
          Length = 517

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD +  +R+    L +   + V  A +  EA +   +  +P+ +V D  M  +   
Sbjct: 269 RVLIVDDNQDLREYLHQLLS-VRYQVSCAENGKEAWDSILQN-MPDLVVSDVMMPVMDGI 326

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +++Q    + + V  L  +   E  + G  +GA+ +L KPF+ + +   +  + + 
Sbjct: 327 QLCRNIKQNLSTSHIPVILLTAKAASEDYVEGLESGADVYLEKPFSGDVINAQIASIFRN 386

Query: 121 QKSKDEN 127
           ++   ++
Sbjct: 387 REGMKKD 393


>gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
 gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
          Length = 235

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R        + G+ V+ AT+  E  E   K    +  ++D  M  +   
Sbjct: 4   TILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHE-IHLAIVDIMMPVMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++      D  + +L  + +    I G   G + ++ KPF    L   +    +  +
Sbjct: 63  TMTMKLRQKY-DFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYE 121

Query: 123 S 123
            
Sbjct: 122 Q 122


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G++V       +  E    E   + +++D  + G  
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAAL-EKNYDLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R         +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GLEVCRRLRA---TKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDE 126
           + +++ ++
Sbjct: 117 RREENTEQ 124


>gi|110638364|ref|YP_678573.1| response regulatory protein, sigma 54 related [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281045|gb|ABG59231.1| response regulatory protein, sigma 54 related protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 384

 Score =  131 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +R     +     + V EA    E  +   +    + ++ D  M  + 
Sbjct: 1   MPKILIIDDERSIRSTLTEILEYEKYTVEEAKDGEEGLKMILENDY-DVVLCDIKMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G D+    +      E  I   R GA  F+ KP +   L  ++R     
Sbjct: 60  GMEVLEKVYTSGKDIPFIMISAHGSIETAIDATRKGAYDFITKPPDLNRLLVSVRNAMDR 119

Query: 121 QKSKDENQFLD 131
                E + L 
Sbjct: 120 SNLVTETKTLK 130


>gi|329920981|ref|ZP_08277509.1| response regulator receiver domain protein [Lactobacillus iners
           SPIN 1401G]
 gi|328935257|gb|EGG31737.1| response regulator receiver domain protein [Lactobacillus iners
           SPIN 1401G]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      +  +    A    EA      +     +++D  M  + 
Sbjct: 1   MVKVLVVDDDKEIVELLSIYLKNENYDPIVACDGREALTKFRMDPSITCIILDIMMPEMS 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++   ++V +  +         I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 61  GL-DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRR 119

Query: 121 QK 122
            +
Sbjct: 120 SE 121


>gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
 gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
          Length = 1400

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+ +  + +    L + + + V  A    E  E   K   P+ +V D  M  +   E
Sbjct: 579 VLVVEDNPEMNRFIAELLSKY-YFVVTAFDGIEGIEK-TKAFTPDLIVTDCMMPKMSGDE 636

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R      ++ +  L  + D    +   + G + ++ KPF+ E L   +  L  M+
Sbjct: 637 MVEKLRSDEQYDNIPIILLTAKADENLRVRLLQNGVSDYVNKPFSSEELVARVVNLMTMK 696

Query: 122 KSKD--ENQFLDA 132
           K+K   + +   A
Sbjct: 697 KAKQFLQEELSSA 709



 Score = 67.1 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFC--EKELLPNYLVIDESME-- 57
            S++LVD       +   +    G   +     V +A +F     +  P+ ++ D +M   
Sbjct: 1227 SIMLVDDLEETNLLFSSMLYKLGARRIDTFQRVADAYQFLCDPNKPQPDIILSDLTMPFE 1286

Query: 58   GVLEFIAHVR----QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFN 106
                 +  +R      P    + +  L   V         ++G +    KP N
Sbjct: 1287 DGYSMVRKLRDREKINPQNKVIPIIALTASVSSYDKEKVLKSGFDLHCPKPVN 1339


>gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    +      +     + V    +  +A ++   +   +  ++D  M  +   
Sbjct: 2   RLLLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDY-DGAILDVMMPKMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +      +  V  L  + + E  + G  +GA+ +L KPF  + L   +R + + Q
Sbjct: 61  TVVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQ 119


>gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 4/134 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ + +++    +R + +     FG+ V       +A    E +  P   V D  + G+ 
Sbjct: 1   MELIYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESD-QPALAVFDLMLPGMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+     D+ +  L  +      +AG   GA+ ++ KPF    L   +R L 
Sbjct: 60  GLTAIRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLL 119

Query: 119 QMQ-KSKDENQFLD 131
           +   + + E+  L+
Sbjct: 120 RRSTRDQAESNELN 133


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    ++ + +    D  + V  +    E  E  +     + +++D  +  + 
Sbjct: 1   MKKILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTY-DLIILDIMLPKIS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    + V +  L    D +  I G    A+ ++ KPF+ + L   +  + 
Sbjct: 60  GFAVCEMIRKE---SHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 9/134 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +VD    +R +        G+      +  E  +       P+  V+D  + G+  F 
Sbjct: 7   IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNP-PDMWVLDIMLPGMDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM- 120
               +R       V +  +  +      I G   G++ +++KPF+   L   ++      
Sbjct: 66  LCRRIRAEAE---VPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRW 122

Query: 121 -QKSKDENQ-FLDA 132
            + ++ EN   L A
Sbjct: 123 YKFNRAENVPRLAA 136


>gi|220925821|ref|YP_002501123.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950428|gb|ACL60820.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +R +     +  GF V  A SV EA     ++ +P  +++D  +    
Sbjct: 1   MTSVLVVEDDSDIRGMLARGLSAEGFSVNLAGSVDEALAAA-RDRVPEAVLLDIMLPDGS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G    + +L  + +    + G   GA+ +++KPF  + L   +R   
Sbjct: 60  GHDVCRSLR--EGGYPGAILFLSAKDEVSDRVDGLAVGADDYIVKPFAFDELLARLRTHL 117

Query: 119 QMQKSKDENQFL 130
           Q +++  E + L
Sbjct: 118 QRRRAAGEPRTL 129


>gi|153815040|ref|ZP_01967708.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756]
 gi|331088614|ref|ZP_08337525.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847608|gb|EDK24526.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756]
 gi|330407571|gb|EGG87071.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 45/117 (38%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+++    ++     +     + V  A +  +  E   +   P+ +++D  +  +   
Sbjct: 5   SVLIIEDEKNIQTFMGKVLKRHDYQVLYADTGKQGLEMI-RSRCPDLILLDLGLPDMDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +R +       +  +       + +A    GA+ ++ KPF    L   +R   +
Sbjct: 63  CSIIRDVRTWASTPIIVISARTAEREKVAALDLGADDYITKPFGTSELLARIRASLR 119


>gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 4/130 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    ++LV+    +           G+ V  A    EA E   KE     +++D  +  
Sbjct: 1   MKKAVIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIF-KEKDITLILLDWMLPI 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R++   ++V +  +        +      G + ++ KPF  E L   +R + 
Sbjct: 60  YDGLTV-LRRIRQSSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVL 118

Query: 119 QMQKSKDENQ 128
           +    K   +
Sbjct: 119 RRLGQKKAEK 128


>gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLL++    +R       +  G  V  A +  +  +   +E  P+ +V+D  + G+  F 
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGIDGFE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + +  
Sbjct: 69  VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRG 125

Query: 122 KSKDEN 127
           + +  +
Sbjct: 126 EREATD 131


>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+      +  R   ++ GF+V  A    +           + L++D  +  +  +
Sbjct: 2   KILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDY-DLLILDVMLPRMDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G ++ V +L      E  + G   GA+ +L+KPF    L   +R L +  K
Sbjct: 61  ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120

Query: 123 SKDENQFLDA 132
           SK+      A
Sbjct: 121 SKEPETLKAA 130


>gi|203288189|ref|YP_002223204.1| response regulatory protein [Borrelia recurrentis A1]
 gi|201085409|gb|ACH94983.1| response regulatory protein [Borrelia recurrentis A1]
          Length = 451

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+ D    +R+       + G+ VF A+   EA E  + E   + ++ D  M  + 
Sbjct: 1   MSKLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEK-IDAIISDLRMPQIS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  V+      ++    L      +  +   R GA  FL KP + E L   ++   
Sbjct: 60  GEELLKIVK--DRNLNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRAL 117

Query: 119 QMQKSKDENQFLD 131
           + +  K +   L 
Sbjct: 118 KKRNDKTQQNVLQ 130


>gi|254424516|ref|ZP_05038234.1| Stage II sporulation protein E [Synechococcus sp. PCC 7335]
 gi|196192005|gb|EDX86969.1| Stage II sporulation protein E [Synechococcus sp. PCC 7335]
          Length = 422

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 8/135 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV---L 60
           +LL+D    + +  + L    G+ V  A             L P+ ++ D  + G    +
Sbjct: 31  ILLIDDDPYILQGLQRLLQKHGYRVETANDADSGLHKAI-HLAPSVVICDLLLPGGSSGI 89

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ- 119
           +    ++Q P         +    D    +    AGA+  L+KP +   L   +    + 
Sbjct: 90  DICCQIKQDPQLATTAFLIMTSHSDLANRVEALEAGADDLLIKPIDTAELVARVNSGLRL 149

Query: 120 ---MQKSKDENQFLD 131
              MQ  + + + L+
Sbjct: 150 HKLMQALRAQTRRLE 164


>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
           abscessus]
          Length = 227

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +           G+ V    +  +A   C +E  P+ +V+D  + G+  
Sbjct: 5   RRILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHC-RENPPDLMVLDVMLPGLDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                RQ+     + V  L        M+ G   GA+ +L KPF+   L   +  L + 
Sbjct: 64  LEVC-RQVQAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRR 121


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V        G+ V    +  +  +  E+E   + +++D  +  +   
Sbjct: 5   KILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEES-FDLVLLDVMLPELSGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     T   +  +         ++G   GAN ++ KPF+ E L   +R   ++  
Sbjct: 64  EVLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123

Query: 123 SKDENQFLD 131
           ++ + +  +
Sbjct: 124 NEQQEKETE 132


>gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 246

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             L+VD    + +V         F V  A S  +A     +E+ P+ +++D ++ G+   
Sbjct: 13  RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQA-REIDPDVVILDLALPGIDGV 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   +D +V  L         I G   GA+ ++ KPF+   L   +R + +  +
Sbjct: 72  EVC-RQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPR 130


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LL++    +  + ++     GF +    +   A E C +++ P+ +++D  +    
Sbjct: 6   MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELC-RQVRPDLILLDIMLPDSD 64

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    +R+ P    + V +L         I G   GAN +++KPF    L   ++   
Sbjct: 65  GLDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIK--L 122

Query: 119 QMQKSKDENQFLDA 132
           Q +      + L+A
Sbjct: 123 QFRNQATPARLLEA 136


>gi|322385260|ref|ZP_08058906.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270683|gb|EFX53597.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 232

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    E  +   K+ + + ++ D  M  +  
Sbjct: 3   KTILLVDDEMDILDIQKRYLMQEGYHVLVARDGVEGLDLFRKKSV-DLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIAPDQPFLFTTAKTSDQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 HRGGEIEQIE 131


>gi|313498283|gb|ADR59649.1| Multi-sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 1149

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD                G +V    +  EA E  E+    + +++D  M  +  
Sbjct: 1025 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1084

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ P    + +  +  +   +      +AGAN +L KP + + L   +R   
Sbjct: 1085 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1143



 Score = 86.8 bits (215), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++      ++   L ++ G+    A    E  E    + +P+ +++D  +     L 
Sbjct: 759 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA-AQYIPDAILLDMRLPDHSGLT 817

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117
            +  +++      + V+ +      E  +      GA  + +KP +RE L+     L
Sbjct: 818 VLQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 870



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLV+   + R+    L  D    +       +A     + +  + ++ID  +  +L 
Sbjct: 879  KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY-DCMIIDLKLPDMLG 937

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111
               +  +    +     V           +   ++  +R+    GA        + E L 
Sbjct: 938  NELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 990

Query: 112  FAMRELPQMQKSKDENQF 129
              +       +S+  N+ 
Sbjct: 991  DEVTLFLHKVESQLSNER 1008


>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    + K+         F +  A S  EA    E E   +++V+D  M  +  
Sbjct: 3   KTILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALE-ENHIDFIVLDIVMPDMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R      +V + +L         I G   GA+ ++ KPF+ + L   ++   +
Sbjct: 62  LDVCRSIRNS---YNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFR 118

Query: 120 M 120
            
Sbjct: 119 K 119


>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++++V+    + +V        G+     T    A E     + P  +++D  + G+ 
Sbjct: 1   MRTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQL-TTVQPALILLDVMLPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R++   +   V  L  + +    + G  +GA+ +++KPF    +   ++ + + 
Sbjct: 60  GW-EVLREVRNRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRR 118


>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF+         A     ++  P+ +++D  + G+
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAF-RDNRPDIVLLDLMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R +   + V +  L  + D   ++ G  +GA+ +++KPF  + L   MR   +
Sbjct: 60  SGIDVA-RAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|209523595|ref|ZP_03272149.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209496000|gb|EDZ96301.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 356

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+VD       V   L +D  + +   ++   A    +  L PN +++D  M  +   
Sbjct: 7   SILIVDDDPDNFDVIETLLSDQNYQLHYTSNGTRAIASLDI-LQPNLILLDVMMPDMDGQ 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++ +     + +  +      E +      GA+ F+ KP NR  L   +  + ++
Sbjct: 66  QVCRAIKDIRKWQTLPIIMVTALDSKEDLARCLETGADDFISKPINRVELVARVNSMLRI 125

Query: 121 QKSKDENQFLDAI 133
           +   D+   L+AI
Sbjct: 126 KSQYDD---LEAI 135


>gi|254410317|ref|ZP_05024096.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182523|gb|EDX77508.1| GGDEF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 331

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 10/138 (7%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R V R      G+ V E     +   FC  E LP+ +++D  M  +  F 
Sbjct: 13  ILIVDDEKTLRLVLRRAMEQEGYRVSEVGDGHQCLAFC-TEQLPDIILLDAMMPVMDGFT 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP--- 118
             A +++        V  +    + E +     AGA  ++ KP +   LR  +R L    
Sbjct: 72  CCAQLQERFGQKCPPVLMITGLNNQESVDRAFEAGATDYITKPIHWAVLRQRVRRLLHTH 131

Query: 119 ----QMQKSKDENQFLDA 132
               ++ +  ++ + L A
Sbjct: 132 WVMAELHRKIEQERVLKA 149


>gi|168204365|ref|ZP_02630370.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170664057|gb|EDT16740.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 234

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE   +  V+D  M  +   
Sbjct: 5   NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ + +A +     E  EK    + +++D  +  + 
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGE-IDLILLDIMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +        GF V  A S  +A      E   +  ++D  +  +  F
Sbjct: 4   RILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADA-AKAILEQEFDLALLDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R +       V  L      +  I G   GA+ +++KPF    L   +    + 
Sbjct: 63  -ELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRR 119


>gi|88608688|ref|YP_506396.1| response regulator PleD [Neorickettsia sennetsu str. Miyayama]
 gi|88600857|gb|ABD46325.1| response regulator/GGDEF domain protein [Neorickettsia sennetsu
           str. Miyayama]
          Length = 456

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      K+         + V  A+S   A E   K+  P+ +++D  M  +  F 
Sbjct: 5   ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELA-KQHQPDVILLDVMMPEMDGFE 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  +    D E  + G  +GA+ FL+KP    TL   ++ L + +
Sbjct: 64  TCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLFIRIKSLLRFK 123

Query: 122 KSKDENQF 129
              DE + 
Sbjct: 124 TVLDEVRL 131



 Score = 46.0 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 47  PNYLVIDESME-GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEK---MIAGARAGANSFLL 102
            + L+++ S+   +L   + ++       + +  +    D +    +      G N ++ 
Sbjct: 196 FDVLIVNISLSKDLLRLCSAIKSHLKTRSIPIMAI--VDDEDDESLITEITELGINDYIC 253

Query: 103 KPFNRETLRFAMRELPQMQKSKD 125
            P N+      +    + +K +D
Sbjct: 254 VPINKSEFIARVTTQVKRKKYQD 276


>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+         +    + GF+              + E   +  ++D  + G  
Sbjct: 1   MK-VLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENY-DLAILDVMLPGCD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   VR++       V +L      +  + G   G + +L KPF+   L   +R L + 
Sbjct: 59  GWTV-VRELRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117

Query: 121 QKSKD 125
            +S D
Sbjct: 118 GQSSD 122


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +LLV+    +           GF+V    +  +       E   + +++D  + G  
Sbjct: 1   MK-VLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEA-TENPFDIVILDIMLPGRS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E +  +R   +     V  L  +            GA+ +L KPF+   L   +R L 
Sbjct: 59  GYEVLRRMRSNNVW--TPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALV 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|327403396|ref|YP_004344234.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327318904|gb|AEA43396.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LL +    + ++ +      G+ V  A +   A E    +   ++ + D  M  +  
Sbjct: 5   RSILLAEDDDNLGQLLQTFLKAKGYQVELARNGKHAYEKY-TDGHFDFCIFDVMMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F        +   V + +L  +   E  + G  +GA+ ++ KPF  E L   +  + + 
Sbjct: 64  FTLAKEVRLIDPKVPILFLTAKAMKEDKLEGFESGADDYMTKPFTMEELLARIEAILRR 122


>gi|315653104|ref|ZP_07906029.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|315489469|gb|EFU79106.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 245

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      +  +    A    EA      +     +++D  M  +   
Sbjct: 19  KVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMSGL 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   ++V +  +         I G   GA+ ++ KPFN   +   +R L +  +
Sbjct: 79  -DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSE 137


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+ +  + +    +  D  F V  A +  +      + +  + +++D  +  +  F
Sbjct: 2   RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIY-DAILLDVMLPEMDGF 59

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      +  V +L      E  + G   G + +++KPF    L+  +R L +   
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 123 SKDENQFL 130
           S    Q +
Sbjct: 120 SLTTKQTI 127


>gi|258514099|ref|YP_003190321.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum acetoxidans DSM 771]
 gi|257777804|gb|ACV61698.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfotomaculum acetoxidans DSM 771]
          Length = 448

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D    +        +  G+ V  +T   +      +E+ P+ +++D  +  +   
Sbjct: 4   RILVIDDEEKMCWALDRALSHEGYQVITSTEGLQGIALA-QEIEPSIVILDLWLPDIDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  +   +   + V  L      E  I   + GAN ++ KPF  + L+  +++   + +
Sbjct: 63  EALRKIKEINAGMPVIMLTAHGTIETAIEAMKLGANDYITKPFKLDELKVLLKQALHVHQ 122

Query: 123 SKDENQFL 130
            + E  FL
Sbjct: 123 LETEVDFL 130


>gi|239817851|ref|YP_002946761.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804428|gb|ACS21495.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 249

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +       F  FG+ +  A    E           +  ++D  +  + 
Sbjct: 18  MPRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGP-FDAAILDVMLPEMD 76

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+    +D+ +  L    +    + G   GA+ ++ KPF    L   ++ + 
Sbjct: 77  GFALCREIRKE---SDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTIL 133

Query: 119 QMQKS 123
           + Q+S
Sbjct: 134 RRQRS 138


>gi|153873769|ref|ZP_02002241.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
 gi|152069768|gb|EDN67762.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Beggiatoa sp. PS]
          Length = 173

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME---GV 59
           +LL+VD +    +V         F +  A +  +A E  E+E LP+ +++D  M      
Sbjct: 10  TLLIVDDTPENIRVLFDFLIAHDFRILVAENGEDALENAEEE-LPDLILLDVMMPAGIDG 68

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++      D+ V ++    D    +     GA  ++ KPF +E +   +     
Sbjct: 69  FETCRLLKDNAQTQDIPVIFMTALSDTLDKVKAFELGAVDYVTKPFQQEEVLARINTHLT 128

Query: 120 MQKSKDENQ 128
           ++K + + Q
Sbjct: 129 IRKLQKKLQ 137


>gi|94308987|ref|YP_582197.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93352839|gb|ABF06928.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +R+  R      G  V EA ++            P+ +++D  +      
Sbjct: 8   TVLLVEDEPHIRRFVRESLQSEGCTVHEADTLKRGL-IDAGTRQPDVVILDLGLPDGDGM 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
              +R+M   T+V V  L         IA   AGA+ +L KPF    L   +R L +  
Sbjct: 67  T-LIREMRTWTEVPVLVLSARTGEADKIAALDAGADDYLTKPFGVGELVARVRVLLRRH 124


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +L+VD + I R V + +    GF V  A +  +A E  +     + +++D  M  +  F 
Sbjct: 989  ILVVDDNEINRIVAKEILQSEGFQVSLAENGRQAVEKIQSG-QFDLVLMDCEMPEMDGFA 1047

Query: 63   -IAHVRQ-----MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                +R       P   ++ +  L  +           AG N +++KP NR  L   + +
Sbjct: 1048 ATRMIRNLAENGHPELANLPIVALTAQAVLGDKERCLAAGMNGYVMKPVNRSELIDTIVD 1107

Query: 117  LPQMQKSK-DENQFLD 131
                + S   E   L 
Sbjct: 1108 CLSRKDSSVAEMDLLS 1123



 Score = 76.0 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 7/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
            +L VD +H+  +V +     +G  V  A +   A    E    + +     ++D  M  
Sbjct: 841 RVLAVDDNHMNLQVIKEQLQSWGVEVSTAGNGRRALALLEDAAKRNVPYQLAILDHLMPE 900

Query: 59  VLE--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +        +    +  +  +  L             +      L KP  +  L  A+  
Sbjct: 901 LDGLRLAHLINDHQMLHETRLLMLTSYEHTIPHAELKKLEMV-CLPKPVRQTRLLDALVA 959

Query: 117 LPQMQKSKDENQFLD 131
           L   +  K + + ++
Sbjct: 960 LTGERSPKQKVEKVE 974


>gi|118578946|ref|YP_900196.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118501656|gb|ABK98138.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 236

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 1   MDS------LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDE 54
           M+       ++LV+    + +       + G  +    +  +A E  + E   + +++D 
Sbjct: 1   MNRDTEKPHIMLVEDEIHLARGICFNLEEDGCRISHFATGEKALEALQFEH-FDLIILDV 59

Query: 55  SMEGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRF 112
            + G+  F     VR+M     V +  L    +    + G   GA+ +L KPFN      
Sbjct: 60  MLPGMDGFQVCQSVRRMDG--RVPILMLTARSEESDRVHGLETGADDYLTKPFNLVEFLL 117

Query: 113 AMRELPQM 120
            ++ + + 
Sbjct: 118 RVKGMLRR 125


>gi|330897949|gb|EGH29368.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330982029|gb|EGH80132.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+       +        GF V  A +     +   ++  P+ +++D  +     
Sbjct: 4   KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + ++ VR     +D  V  +    D  + +   R GA+ +++KP+N   +   +  + +
Sbjct: 63  TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119

Query: 120 MQKSKDENQF 129
             +    N+ 
Sbjct: 120 RSQQNGSNER 129


>gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    +      + +  G+ V +A +  E         +P+ +++D  +  +   
Sbjct: 6   TVLIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSH-VPDLILLDLGLPDIDG- 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           I  ++ +   +   V  +       + +A    GA+ +++KPF    L   +R   +
Sbjct: 64  IEILKNLRQWSKTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMR 120


>gi|262409339|ref|ZP_06085882.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_22]
 gi|262352791|gb|EEZ01888.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_22]
          Length = 941

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D +  +R   R L +   + V EA    E      K  +P+ ++ D  M G+   
Sbjct: 695 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 752

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPF+ + L   +R L   
Sbjct: 753 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 812

Query: 121 QKSKDE 126
            +   +
Sbjct: 813 HRRLKQ 818


>gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 234

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC--EKELLPNYLVIDESMEG-- 58
            LLLV+    V      +    GF V  A +  EA +            +++D  +    
Sbjct: 2   RLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGLPDQD 61

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+    T   V  +    D    I G   GA+ +++KP++   L   +  + 
Sbjct: 62  GYEVCGKIRKR---TSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVA 118

Query: 119 QMQKSKDE 126
           +   + DE
Sbjct: 119 RRTGATDE 126


>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 250

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LLVD    +  +         F  +  A +  E      K    + +++D  +  +  
Sbjct: 18  KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLI-KNHPFDIILLDVMLPDIDG 76

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     T+  + ++         + G   G + ++ KPFN   +   +    +
Sbjct: 77  FELCRQIRN---YTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLR 133

Query: 120 MQKSKDE 126
            Q    E
Sbjct: 134 RQHMTQE 140


>gi|223936913|ref|ZP_03628822.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [bacterium Ellin514]
 gi|223894482|gb|EEF60934.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [bacterium Ellin514]
          Length = 291

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R   + + +D G+ V    S  EA     +E     ++ D  + G+  + 
Sbjct: 8   VLVVDDEKNMRLSLKTVLSDEGYAVRPVESAEEALNVLAQEEFL-LVITDARLGGISGYE 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +      ++ +  +      +  +   +AGA  +L KPF  E L  A+    +  + 
Sbjct: 67  LIGKVHARWPELPILMITAYATPKLAVEAIKAGAFDYLAKPFAPEELLHAVARCSERHRL 126

Query: 124 KDENQFLDA 132
             +N  L A
Sbjct: 127 MHQNATLRA 135


>gi|209964315|ref|YP_002297230.1| transcriptional regulatory protein YycF [Rhodospirillum centenum
           SW]
 gi|209957781|gb|ACI98417.1| transcriptional regulatory protein YycF [Rhodospirillum centenum
           SW]
          Length = 141

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            S+L+ D    +      +    GF V   T+         +E  P+ +++D  M     
Sbjct: 14  RSILVADDEPSIVLSLEFILKKAGFRVRVVTTGGAVLPAMTEET-PDLVLLDAMMPERDG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +    +R  P  + + V  L       +   G   GA+ ++ KPF+   L   +R   
Sbjct: 73  YDVCQEIRSNPAWSAIPVIMLTARSREVERQKGLALGASDYVTKPFSTRELVETVRRHL 131


>gi|187920088|ref|YP_001889119.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN]
 gi|187718526|gb|ACD19749.1| multi-sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN]
          Length = 1195

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LL +          H+    G  +  A +  EA E  E     + +++D  M  +  
Sbjct: 1074 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1133

Query: 62   FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A   +R+ P    + +  L  +           AGA+ ++ KP + + L    R   +
Sbjct: 1134 LTAMGEIRRDPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1193

Query: 120  MQ 121
             +
Sbjct: 1194 QR 1195



 Score = 78.7 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           ++ V+      ++ R L ++  F    A+S         +++ P  +++D  +     L 
Sbjct: 808 IIAVEDDAAFAEILRDLTHELDFDFVHASSAASGLALV-RDMRPAAVLLDVGLPDRSGLT 866

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  PL   + ++ +      +        GA  + LKP  R T+  A+R L    
Sbjct: 867 VLEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARSTMEAAIRRLEARL 923

Query: 122 KSK 124
           + +
Sbjct: 924 QQR 926



 Score = 69.5 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              +L+++    +R+  R L       +    ++ EA E+  K    + +V D ++     
Sbjct: 928  KRVLVIEDDAPMRESIRALLQSENTEIVAVATLTEALEYLGK-FSFDCVVTDLALPDGTG 986

Query: 60   LEFIAHVRQMPLGTDVFVYYLLME---VDFEKMIA 91
             + +  +        + V          + E  + 
Sbjct: 987  YDLLERLAANTAHAALPVIVYTGRMLSDEEEHRLR 1021


>gi|166362770|ref|YP_001655043.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
 gi|159027464|emb|CAO89429.1| ycf29 [Microcystis aeruginosa PCC 7806]
 gi|166085143|dbj|BAF99850.1| two component transcriptional regulator [Microcystis aeruginosa
           NIES-843]
          Length = 218

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ D    +R   +      G+ V  A++  EA    +    P+ LV D  M  +    
Sbjct: 5   ILIADDDPGIRLAVKDYLELAGYSVVAASNGLEALNLLDT-YHPHLLVSDIKMPRLDGYS 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  VRQ P    + V +L      E+ I G + G + +L KPF  E L+  +R L +  
Sbjct: 64  LVTKVRQQPEFRLLPVIFLTERGSTEERIRGYQVGCDIYLPKPFEMEELKAVIRNLLERS 123

Query: 122 KSKDENQF 129
           +     + 
Sbjct: 124 QMVQSERQ 131


>gi|157375453|ref|YP_001474053.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
 gi|157317827|gb|ABV36925.1| response regulator receiver protein [Shewanella sediminis HAW-EB3]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD   I R++ +      G  V  A +  EA    E E LP+ +++D  M  + 
Sbjct: 1   MSKVLVVDDDLIFRELLKEALECEGHEVISAQNGMEALSILECE-LPDIILLDIMMPKLD 59

Query: 61  EF-IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F +   R+      + V  +    + ++ I G   GA+ FL KPF+ + L   M  L +
Sbjct: 60  GFGLLAARKD----QIPVIVISAIDNEDERIKGYELGADDFLTKPFSIKELLVRMTALQR 115

Query: 120 MQKS-KDEN 127
             +  + EN
Sbjct: 116 RVELTRAEN 124


>gi|312131403|ref|YP_003998743.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311907949|gb|ADQ18390.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 2/127 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  SLLL +    + ++ +      GF V  A +  +A +        +  ++D  M   
Sbjct: 1   MKISLLLAEDDPNLGELLQDYLTAKGFQVTLAVNGEQAFDLFCLNEY-HLCILDVMMPKK 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F            + + +L  +   E  + G   GA+ +L KPF  E L   ++ + +
Sbjct: 60  DGFSLAKDIRLHNEFIPIIFLTAKSMKEDTLKGFEVGADDYLTKPFLMEELLVRIKAIIK 119

Query: 120 MQKSKDE 126
             + K+E
Sbjct: 120 RTQGKEE 126


>gi|297156766|gb|ADI06478.1| two-component system sensor kinase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1814

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1694 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1753

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               A +R+MP    + +  L  +          +AGA+ ++ KP + + L   M +  
Sbjct: 1754 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIQAGASDYVTKPVDTDHLLAVMEQWM 1811


>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 4   RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 63  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 121


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ + +A +     E  EK    + +++D  +  + 
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEA-DLVLLDIMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|125717941|ref|YP_001035074.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125497858|gb|ABN44524.1| Two-component response transcriptional regulator (CheY-like
           receiver domain and a winged-helix DNA-binding domains),
           putative [Streptococcus sanguinis SK36]
          Length = 232

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    E  +   K+ + + ++ D  M  +  
Sbjct: 3   KTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSV-DLIITDIMMPNMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 62  YDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 121

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 122 HRGGEIEQIE 131


>gi|49474886|ref|YP_032927.1| transcriptional regulator [Bartonella henselae str. Houston-1]
 gi|49237691|emb|CAF26878.1| Transcriptional regulator [Bartonella henselae str. Houston-1]
          Length = 240

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 STRNQ 131


>gi|28898757|ref|NP_798362.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153837817|ref|ZP_01990484.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|260364169|ref|ZP_05776875.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260877252|ref|ZP_05889607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260897802|ref|ZP_05906298.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|260901569|ref|ZP_05909964.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806975|dbj|BAC60246.1| putaive two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149748838|gb|EDM59677.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|308087625|gb|EFO37320.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308090337|gb|EFO40032.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308110905|gb|EFO48445.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308115230|gb|EFO52770.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|328474683|gb|EGF45488.1| putative two-component response regulator [Vibrio parahaemolyticus
           10329]
          Length = 225

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ +  +  +    F   G  +  A +     +        + +++D  +  + 
Sbjct: 1   MKRVLLVEDNREIAGMLFDYFECAGMQLDYADNGELGLKLAMDN-AFDIILLDLMLPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  V  L      + M+ G + GA+ +L KPF+ + L   M  L + 
Sbjct: 60  GLTLCNKLRDAGNNTPVLMLTALDSRDDMLKGFQHGADDYLTKPFDLDILEARMTALIKR 119

Query: 121 QK 122
            +
Sbjct: 120 YR 121


>gi|172057018|ref|YP_001813478.1| response regulator receiver modulated serine phosphatase
           [Exiguobacterium sibiricum 255-15]
 gi|171989539|gb|ACB60461.1| response regulator receiver modulated serine phosphatase
           [Exiguobacterium sibiricum 255-15]
          Length = 367

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP---NYLVIDESMEG- 58
           S+L+VD       +   L  + G+ V +A S  EA E  E  L     + +++D  M G 
Sbjct: 2   SILVVDDEFTNLMILERLLENEGYDVVKAMSGEEALELMEDPLFIETLDVVLLDVEMPGI 61

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R+     ++ +  +    + E +  G  AGA+ +  KP  +  L   +R  
Sbjct: 62  SGIDATRLIRKRFGLDELPIVIVSGRSNEEDIADGLDAGASDYTTKPIRKTELLARVRNA 121

Query: 118 PQMQKSKDENQFLDAI 133
             ++++ D  +  + +
Sbjct: 122 MSLKQAIDARKRYEKV 137


>gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
 gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
          Length = 239

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           + +VD    +R +        G+      +  E  +       P+  V+D  + G+  F 
Sbjct: 7   IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNP-PDMWVLDIMLPGMDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R       V +  +  +      I G   G++ +++KPF+   L   ++     
Sbjct: 66  LCRRIRAEAE---VPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSR 121


>gi|299147501|ref|ZP_07040566.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514779|gb|EFI38663.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1333

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++ +  VR+    LF+   ++++EA    E      KE LP+ ++ D  M     
Sbjct: 1086 KSLLIIEDNEDVREYICSLFSSR-YIIYEAGDGEEGVRIA-KEQLPDLVISDVMMPVKDG 1143

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL-P 118
            F     +R       + +  L  + +   ++ G+ +GA+ +++KPFN E L+  +  L  
Sbjct: 1144 FACCREIRGRQETAHIPILLLTAKSEDTDILQGSYSGADDYMMKPFNPEVLKTKVDNLIL 1203

Query: 119  QMQKSKD 125
            Q ++ K 
Sbjct: 1204 QRERLKR 1210


>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+  H + ++  H     GF +  A    E     +++   + +++D  +    
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSY-DLILLDIMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F+  +R+    +++ V  +  +        G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GMDFLKIIREK---SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 242

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +   +    G       S  +A +   KE   + ++ID  M G+  F
Sbjct: 12  KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEP-FDLVLIDIMMPGMDGF 70

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A++RQ+   TD  + +L  +     ++ G   GA+ +++KPF    L   +R   +
Sbjct: 71  ELCANLRQV---TDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLR 126


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD    +  V  +     G+ V  A    EA +  E    P+ +V+D  +      
Sbjct: 4   KILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEV-YKPHIVVLDLMLPVINGY 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +     G ++ +  L  + D    I G   GA+ ++ KPF+   L   ++ L + 
Sbjct: 63  DVCKRL----EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRR 118


>gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
 gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
          Length = 246

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+V+    +  +     +  G+ V       EA +    E + + +V+D ++ G   +
Sbjct: 22  RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAE-MYDLIVLDLNLPGVDGM 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+     +  V  L         I G  AGAN ++ KPF+ + L   +R L + 
Sbjct: 81  EILRELRKEDE--ETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRR 138

Query: 121 QKSKD 125
           +  + 
Sbjct: 139 KFIQK 143


>gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 233

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD +  +    +     + + V    S  EA          + +++D  MEG+  
Sbjct: 4   KKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNN-FDLIILDIMMEGIDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               + +R      D  + ++  +   E  I     G + ++ KPF+ + L+  +    +
Sbjct: 63  MELCSMIRDR---VDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLR 119

Query: 120 MQKSKDENQF 129
            ++    N+ 
Sbjct: 120 REERIRSNER 129


>gi|168206898|ref|ZP_02632903.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
           JGS1987]
 gi|170661686|gb|EDT14369.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
           JGS1987]
          Length = 237

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L+++    +R           +    A +  +          P+ +++D  +  +
Sbjct: 1   MKPSILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGM-ILAISKRPDIIILDLGLPDM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  ++++   ++  +  +    +    I     GA+ +L KPF+ + L   +R   +
Sbjct: 60  DG-IEIIKKVREWSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIR 118

Query: 120 M 120
            
Sbjct: 119 K 119


>gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +    +    +  F V       E           + +V+D  +  +  F
Sbjct: 2   RILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAY-DLVVLDIMLPLMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G  +    L  +   E  + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRR 118


>gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHASSEII 128


>gi|330954699|gb|EGH54959.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+       +        GF V  A +     +   ++  P+ +++D  +     
Sbjct: 4   KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + ++ VR     +D  V  +    D  + +   R GA+ +++KP+N   +   +  + +
Sbjct: 63  TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119

Query: 120 MQKSKDENQF 129
             +    N+ 
Sbjct: 120 RSQQNGNNER 129


>gi|315651479|ref|ZP_07904502.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
 gi|315486299|gb|EFU76658.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    +  +        G  V  A       +   K+  P+ +++D  M    
Sbjct: 1   MSRILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLARKQ--PDLIILDIMMPKAD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R   L     + +L         I G   G + +++KPF  + L   +    
Sbjct: 59  GFEVCNAIRDDVL---CPIIFLSARQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANL 115

Query: 119 QMQKSKD 125
           + +K   
Sbjct: 116 RREKRSQ 122


>gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 235

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    ++K+ + +F + G+ V          +        + +V+D  +  +  
Sbjct: 12  TQILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRY-SAVVLDLVLPNIFG 70

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++      D+ V  +    D    +     GA+ ++ KPF+   L   ++   +
Sbjct: 71  RDVCKTIKSEQE--DMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMR 128

Query: 120 MQK 122
            ++
Sbjct: 129 RRQ 131


>gi|322436044|ref|YP_004218256.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321163771|gb|ADW69476.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 238

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    +R+      +  GF + EA S  EA          + +++D +M G+    
Sbjct: 11  VLLVEDDRSIRRGLFATLSAMGFALGEAESGEEALLKLHVLPY-DAVLMDLNMPGMGGIE 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           A  R       + +  + +    E  I    AGA+ F+ KPF    L   +R   + Q+
Sbjct: 70  ACRRVRKEYPHISILVVTVRDREEDKIEALDAGADDFVTKPFKMGELAARIRSAVRRQR 128


>gi|239908512|ref|YP_002955254.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
 gi|239798379|dbj|BAH77368.1| response regulator receiver protein [Desulfovibrio magneticus RS-1]
          Length = 380

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDF-GFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  +L+ D + I R+V +       G+ V EA +  +A +  E    P+ +++D  M G 
Sbjct: 1   MTQVLIADDNAIFREVLKRHVASLFGYDVIEAATGLDAVDLAET-RHPDLILLDLVMPGL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E I  +R  P   DV + +L  E D         AGAN F+ KP++R  L   +   
Sbjct: 60  DGIEVIRRIRANPRLADVPIIFLSAETDRRVWAEALSAGANDFMPKPYHRSELAARINLH 119

Query: 118 PQMQKSKDENQF 129
            ++     E + 
Sbjct: 120 LKLASLGQELRR 131


>gi|225012590|ref|ZP_03703025.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
 gi|225003123|gb|EEG41098.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-2A]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    + ++ R+     G+ +F A+   EA +  +KE LP+ +++D  M     +
Sbjct: 7   KILLVDDEPDIIEIVRYNLEQVGYQIFSASDGLEALKVADKE-LPHLIILDVMMPNLNGI 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ     +  + +L    +    +A    GA+ ++ KP   + L   ++ L + 
Sbjct: 66  ETCEKLRQDDRFLNTIIMFLTARGEDYSFVAAFDVGADDYVTKPIKPKVLVSKVKGLLRR 125


>gi|222147052|ref|YP_002548009.1| two component response regulator [Agrobacterium vitis S4]
 gi|221734042|gb|ACM35005.1| two component response regulator [Agrobacterium vitis S4]
          Length = 240

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V   T    A +       P   + D  M  + 
Sbjct: 1   MQTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARP-PQLAIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + +    + G + GA+ F+ KPF++  L   ++ + + 
Sbjct: 60  GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118

Query: 121 QKSKD 125
             +++
Sbjct: 119 AANRE 123


>gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    + ++      + GF V        A  + EKE + +  V+D  +  +  F
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V  L  + +    I G   GA+ ++ KPFN   +   ++   +  +
Sbjct: 63  -QLLQNIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121

Query: 123 SKDE 126
             ++
Sbjct: 122 RYNQ 125


>gi|119483261|ref|ZP_01618675.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119458028|gb|EAW39150.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 381

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +LLVD       V   L  D G+ V    S  +A +  +    P  +++D  M  +    
Sbjct: 13  ILLVDDELNNLAVLSALLIDQGYTVRRVLSGQKALDLMKSNQPPALVLLDIMMPEMDGYQ 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V +L    D +  + G   G   ++ KPF    +   ++    ++
Sbjct: 73  VCQKMKSDEKTRGIAVIFLSALDDVKNKVKGFEVGGADYITKPFESLEVITRVQHQLGLR 132

Query: 122 KSKD----ENQFLDAI 133
           K +     E Q  +++
Sbjct: 133 KLQQQIKIEAQLRESL 148


>gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana]
          Length = 240

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 STRNQ 131


>gi|51598676|ref|YP_072864.1| response regulatory protein [Borrelia garinii PBi]
 gi|51573247|gb|AAU07272.1| response regulatory protein [Borrelia garinii PBi]
          Length = 307

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+VD S     +  ++     + V  AT+  +A +  EK+  P+ +++D  +     
Sbjct: 15  QKLLIVDDSPTNLDLLVNILQGA-YEVEVATNGLDALKQVEKDS-PDLILLDIGLPDING 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P   ++ V ++      +  + G   G   ++LKPFN   +   ++   +
Sbjct: 73  YEVCRKLKSDPDTKEIPVIFISSRGSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLE 132

Query: 120 MQKSKD 125
           +++ +D
Sbjct: 133 LKRLRD 138


>gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            +L+VD    + K+         F  + +AT+  EA +   KE   N +++D  +     
Sbjct: 5   KILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQ-LTKEKTFNLILLDIMLPDISG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+    TD  + ++         + G   G + ++ KPFN   +   ++ + +
Sbjct: 64  FELCTEIRRN---TDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILR 120

Query: 120 MQKSKDENQ 128
            QK  + ++
Sbjct: 121 RQKMYERSE 129


>gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ +      G+ V       +  +        + +++D  + G  
Sbjct: 1   MKQILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTY-DLIIVDLMLPGKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   VR++    ++ +  +    +    I G   GA+ +L KPF+   L   ++     
Sbjct: 60  GY-EIVREVREKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLR 118

Query: 121 QKSKDENQ 128
            +    N+
Sbjct: 119 YERLSGNR 126


>gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+   I+ +       +    V  A     A E   K+   + +++D ++ G  
Sbjct: 1   MKNILLVEDDAILSRNISDALLEENMQVEFAYDGNIA-EKMLKKTNFDCVILDVNLPGKN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 + R     T   V  L    + E  I G   GA+ +L KPF    L   ++ L 
Sbjct: 60  GYKICKNFR--SYNTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLL 117

Query: 119 QMQKSKDENQF 129
           +  ++  +N+F
Sbjct: 118 KRSENLGKNEF 128


>gi|291570514|dbj|BAI92786.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 356

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD       V   L +D  + +   ++   A    +  L PN +++D  M  +  
Sbjct: 6   TSILIVDDDPDNFDVIETLLSDQNYQLHYTSNGTRAIASLDI-LQPNLILLDVMMPDMDG 64

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++ +     + +  +      E +    + GA+ F+ KP NR  L   +  + +
Sbjct: 65  QQVCRAIKDIRKWQTLPIIMVTALDSKEDLARCLQTGADDFISKPINRVELVARVNSMLR 124

Query: 120 MQKSKDENQFLDAI 133
           ++   D+   L+AI
Sbjct: 125 IKSQYDD---LEAI 135


>gi|283788574|ref|YP_003368439.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282952028|emb|CBG91757.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+ LV+    +     ++    GF V        A E   +   P+  ++D  +  +  F
Sbjct: 5   SVWLVEDEQGIADTLIYMLQQEGFTVEAFERGLPALER-SRHQCPDVAILDVGLPDISGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +     + V +L    D    + G   GA+ ++ KPF+   +   +R L +  K
Sbjct: 64  ELCRRLLERHPSLPVLFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    ++++ +       + V  A+   E  +   K+   + +++D  M  +  F 
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQS-FDLILLDVMMPNLNGFE 71

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              + +   +++ +  L    + +  + G   G + ++ KPF+   L   +  + +    
Sbjct: 72  VA-KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 124 KDENQFL 130
           +     L
Sbjct: 131 QSTENHL 137


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 3/119 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LL + +           +  GF V  A +  EA +  ++   P+ +++D  M  +    
Sbjct: 1704 ILLAEDNEANIITLTDYLHSKGFRVVLARNGIEAVQQAKQHT-PDVILMDIQMPEMDGLE 1762

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + +  +              AGA  ++ KP   + L   + +    
Sbjct: 1763 STRQIRADSGLPRMPIIAVTALAMPGDREKCLAAGATEYMAKPIRLKKLVTLIEQYLHR 1821



 Score = 73.7 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 5    LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
            L+V+ S            + G  V          +   ++  P+ +++D  +      E 
Sbjct: 1575 LVVEDSDASANHIARYLGELGITVLIHPQGEGTIDTV-QQFNPDVIILDILLPHISGWEV 1633

Query: 63   IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +  +++      + V    +    +        GA  +LLKP +R  L+  + +L 
Sbjct: 1634 LVQLKENSATQSIPVV---VVSVVDDPTQALELGAADYLLKPVSRPQLQSVLSQLF 1686


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|146280681|ref|YP_001170834.1| osmolarity response regulator [Pseudomonas stutzeri A1501]
 gi|145568886|gb|ABP77992.1| two-component response regulator OmpR [Pseudomonas stutzeri A1501]
 gi|327478949|gb|AEA82259.1| osmolarity response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 244

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 1/122 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R++     ++ G+ V    +  +  +      L   +V+D  M G    
Sbjct: 12  KILIVDDDARLRRLLERFLDEQGYRVRTVENTEQ-MDRLLSRELFQLVVLDLMMPGEDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  R       + +  L  + D    I G   GA+ +L KPFN   L   +R + + Q 
Sbjct: 71  SACRRLREANNQIPIIMLTAKGDEASRIQGLEQGADDYLAKPFNPRELLARIRAVLRRQA 130

Query: 123 SK 124
            +
Sbjct: 131 PQ 132


>gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +      + +D  +              CE  L  + +++D  + G+   
Sbjct: 2   NILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLY-DAVIMDGMLPGMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R       + V  L         + G  AGA+ ++ KPF    L   +R L + Q
Sbjct: 61  EVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQ 119


>gi|237715036|ref|ZP_04545517.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262409016|ref|ZP_06085561.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294645619|ref|ZP_06723312.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294809922|ref|ZP_06768596.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444869|gb|EEO50660.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262353227|gb|EEZ02322.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292639064|gb|EFF57389.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294442768|gb|EFG11561.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295087844|emb|CBK69367.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bacteroides
           xylanisolvens XB1A]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +    + G+ V  A S  EA +        + +++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEAMKMDISSY--HLILLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++      V + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMANILKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR 122


>gi|218665330|ref|YP_002424618.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218517543|gb|ACK78129.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 236

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R +       FGF V   +   +  E    E   + +V+D  +     
Sbjct: 7   KQILVVDDDLRLRGLVESHLQGFGFGVRGMSDGRQ-IESLLAEAPVDLIVLDLGLPHEDG 65

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +RQ     DV +  L    D    I G   GA+ +L KPF+   L   ++ + +
Sbjct: 66  LQICRRLRQH---HDVPILMLTARGDEVDRILGLEMGADDYLAKPFHPRELVARIQAILR 122

Query: 120 MQKSKDE 126
             +  D 
Sbjct: 123 RVRGADR 129


>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+V+    + ++ +      GF V    +  +             +++D  +  V 
Sbjct: 1   MDKILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYK-LIILDLMLPNVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR+     ++ V  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKRVREE---KNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQKSK-----DENQFLD 131
              +        EN+ ++
Sbjct: 117 ARYERLIGTGMKENEMIE 134


>gi|89899892|ref|YP_522363.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344629|gb|ABD68832.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 239

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  LL+V+   ++R          G  V  A+    A +   +    + +++D  +    
Sbjct: 1   MSHLLIVEDDELLRDALGAQLTQAGHTVTPASDGERA-QALLESNRFDGVILDLGLPKVS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +R+      + V  L      E  + G  AGA+ +L KPF+   L+  +  + 
Sbjct: 60  GMEVLRWLRKR--LPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAML 117

Query: 119 QMQKS 123
           +  + 
Sbjct: 118 RRARL 122


>gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+      K+   +     +  F A    +A    E++   + +++D  M  + 
Sbjct: 1   MFNILIVEDDANTTKLICAVLKRGNYNCFTARDGLDALSMMERQ-YFDLIILDLMMPRMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R   +G +  +  +  + + +    G   G + ++ KPF+ + + F ++ L 
Sbjct: 60  GYQLCKELR--DVGENTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALL 117

Query: 119 QMQKSKDENQF 129
           +  +  +E++ 
Sbjct: 118 RRAQIVNEHKL 128


>gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           +++L+VD    + ++ R    +  F V  A    EA    ++    + +V+D  M G   
Sbjct: 5   NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQH-AIHCMVLDIMMPGQNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     + V + +L    D    I G   G + +++K  +   +   ++ + +
Sbjct: 64  FELCRRIRAE---SHVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 120

Query: 120 MQKSKD--ENQFLD 131
              ++   E + LD
Sbjct: 121 RSATRQPVEGRVLD 134


>gi|237713754|ref|ZP_04544235.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|229446201|gb|EEO51992.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
          Length = 926

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D +  +R   R L +   + V EA    E      K  +P+ ++ D  M G+   
Sbjct: 680 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 737

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPF+ + L   +R L   
Sbjct: 738 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 797

Query: 121 QKSKDE 126
            +   +
Sbjct: 798 HRRLKQ 803


>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 962

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+ +    +R+V   +     F+V  A       E   +    + +++D  M  +  F
Sbjct: 841 RLLIAEDDATIRQVLAAMLQKLQFVVDFAEDGETVVEKWRQGEY-DLILMDVQMPRLDGF 899

Query: 63  --IAHVRQMPL--GTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                +R+     G  + +  +      E       AG + ++ KP N +     ++
Sbjct: 900 QATRAIREQEQEQGARIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKVK 956


>gi|197118968|ref|YP_002139395.1| sigma-54-dependent transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197088328|gb|ACH39599.1| sigma-54-dependent transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 457

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 2/133 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +R+    L    G++V +A +  +A   C  E     ++ D  M G+
Sbjct: 1   MRARILVVDDELSMREFLSILLEGEGYLVDQAENAEDAL-RCMGEQRYEMVISDVLMPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R      +  V  +      E+ +   + GA  ++ KPF  E ++  +R   +
Sbjct: 60  GGIELLSRIKSESPETAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEVKVLVRNALE 119

Query: 120 MQKSKDENQFLDA 132
            Q    EN+ L A
Sbjct: 120 KQSLVQENKRLKA 132


>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +         G+ V  A+           +  P+ +++D  + G+    
Sbjct: 11  ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQN-PDLVLLDWMLPGISGLE 69

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R    G  V V  +    +     AG  AGA+ +++KPF+ + L   +R   +  + 
Sbjct: 70  ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129

Query: 124 KDENQF 129
             + Q 
Sbjct: 130 SRDGQL 135


>gi|75910180|ref|YP_324476.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75703905|gb|ABA23581.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 431

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 2/124 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L VD +    +V     ++  F V+ A S  +A +  E +LLP+ +++D  M G+  F 
Sbjct: 21  ILAVDDNPNNLQVLSSFLDNSSFEVWAARSGEKALQRLENDLLPDLILLDVMMPGMDGFE 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V ++    + E  + G + GA  ++ KPF  E +   +    +++
Sbjct: 81  TCQRLKSDQRFCDIPVVFMTALSETEDKVKGFQLGAVDYITKPFQHEEVLVRIEHQLKLR 140

Query: 122 KSKD 125
               
Sbjct: 141 HLTA 144


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  +         F V       EA E+       + +++D  M  + 
Sbjct: 1   MK-ILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDY-DVIILDVMMPKMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +  V  L      ++ I G   GA+ +L+KPF+   L   +R L + 
Sbjct: 59  GYEVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118

Query: 121 QKSKDENQF 129
           +     N+ 
Sbjct: 119 KYGNISNEL 127


>gi|28210358|ref|NP_781302.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani
           E88]
 gi|28202795|gb|AAO35239.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani
           E88]
          Length = 220

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L +D    +  + +      G  V   ++     +  +K L  + +++D  M  + 
Sbjct: 1   MACILAIDDEEGILTIIKSALEKEGHNVTTVSNPTCLLK--DKYLKYDLILLDVMMPEID 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R +    D  + +L  +   + ++ G   G + ++ KPF    LR  +    
Sbjct: 59  GFSLCKEIRNL---VDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHL 115

Query: 119 QMQKSKDEN 127
           + +  + +N
Sbjct: 116 RREHREKQN 124


>gi|89091823|ref|ZP_01164778.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92]
 gi|89083558|gb|EAR62775.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92]
          Length = 235

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+VD    + ++        G+++  A +  EA E  ++      +++D  M G   
Sbjct: 4   QRLLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGRTG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE +  +R       + V  L    +    I G   GA+ +L KP N   L   +R + +
Sbjct: 64  LELLQQIR---PKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLR 120

Query: 120 MQKSKDE 126
             + +  
Sbjct: 121 RAEPQQR 127


>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++     +  GF+        EA E   K++ P+ +++D  + G   
Sbjct: 5   QQVLVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEA-EAAIKQVNPDCVILDLMLPGKDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    + V +  L   VD    + G   GA+ ++ KPF+   +   ++ L +
Sbjct: 64  LSICKDVRK---FSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLR 120

Query: 120 MQKS 123
               
Sbjct: 121 RAAL 124


>gi|329926298|ref|ZP_08280817.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328939333|gb|EGG35690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 1050

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L VD   +  ++   + +   + +    S  EA E    +   + L+ D  M  +   
Sbjct: 720 RILAVDDDPVNLRILAGILSAEPYNLNVVASAAEALELLGSQPW-DLLIADVMMPEMSGY 778

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+    +++ V  L    +   + AG ++GAN ++ KP +   LR+ +  L  +
Sbjct: 779 ELTRTVRERFNASELPVLLLTARGESADVYAGFQSGANDYVTKPVDPVELRYRIHSLITL 838

Query: 121 QKSKDENQFLDA 132
           + + D+   ++A
Sbjct: 839 KHTVDDRLRMEA 850


>gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V    +  +  E   K+   +  ++D  M  +  
Sbjct: 3   QKILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDK-FDICLLDVMMPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    +   +  +V   Y+  +   E M  G   GA+ +++KPF+ E L   ++ +    
Sbjct: 62  FTLGKKIREIDGNVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAILSRS 121

Query: 122 KSKD 125
           K ++
Sbjct: 122 KHEE 125


>gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 234

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           + +VD    + ++        G+ V    +     E   K   P+ +++D  +      E
Sbjct: 6   VYVVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSE-PDIVILDIMLPDIDGYE 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R+    +DV +  L  + +    + G   G++ ++ KPF+   L   ++++ + 
Sbjct: 65  ICKRIRKN---SDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRR 120


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLV+    +    +      G+ +  A    EA E  E +   + +++D  +     +
Sbjct: 5   RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEY-DLILLDIMIPNLNGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    + V +  L  + D    + G  AGAN +L KPF  E L   +R   + 
Sbjct: 64  EVCRRIRQ---FSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERD 120

Query: 121 QKSKDE 126
           +  K++
Sbjct: 121 KALKNQ 126


>gi|170749613|ref|YP_001755873.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170656135|gb|ACB25190.1| GAF sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1936

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             ++LVD                G  V  A +  +     +     + ++ID  M G+  +
Sbjct: 1795 RVILVDDDLRNIFSLTSALEQHGLEVLFAENGQDGIALLQTNPNIDAMLIDIMMPGMDGY 1854

Query: 63   I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +R       + +  +  +           AGA+ ++ KP + + L   +R     
Sbjct: 1855 ETMRAIRAQSAFRSLPLIAVTAKAMKGDREKCLDAGASDYVSKPIDMDQLLAVLRVQLAR 1914

Query: 121  Q 121
            +
Sbjct: 1915 R 1915



 Score = 93.3 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            +L+V+   +   V   L  + GF    A     A     +   P+ + +D  +  +    
Sbjct: 1530 VLIVEDDAMFASVLLELARERGFKGLIAQDGAGALSLAHR-FKPHAITLDIGLPDMDGWA 1588

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
             +  ++       + ++ + +  +      G RAGA  FL KP  RE L  A+  
Sbjct: 1589 LLDLLKNDARTRHIPIHVISVNDE---KKRGLRAGAFGFLEKPVEREGLMRALER 1640



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLLV+     R     L ++    +F   +   A E        +  +ID  +   G 
Sbjct: 1650 RNLLLVEDDENQRASITALLDEEDVKIFGVGTATAALEAL-TGGRFDCAIIDLGLPDIGG 1708

Query: 60   LEFIAHVRQMPLGTDVFVYYLLME 83
             E I  +R    G ++ +      
Sbjct: 1709 SELIERIRATQEGEELPIIVYTGR 1732


>gi|153003413|ref|YP_001377738.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152026986|gb|ABS24754.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 1816

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 3/130 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
              +L+VD           L    G  V  A +     E  +     + +++D  M     
Sbjct: 1686 KKILIVDDDVRNVFAITALLEQHGASVVYAENGRRGLEVLKANPGVDLVLMDVMMPELDG 1745

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP- 118
             E +  +R +P    + +  L  +           +GA+ ++ KP   E +   +R    
Sbjct: 1746 YETMRAIRHLPEFERLPIIALTAKAMKGDREKCVESGASDYVTKPVKAEQILSLLRVWLY 1805

Query: 119  QMQKSKDENQ 128
            +  + + E +
Sbjct: 1806 RRPEPRGEAR 1815


>gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 2/132 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+         R    + G++V         +   E E   + LV+D  + G  
Sbjct: 1   MMRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V +L    D    + G   GA+ +L KPF+   L   ++ + + 
Sbjct: 60  GWT-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRR 118

Query: 121 QKSKDENQFLDA 132
            + +D N    A
Sbjct: 119 GQPRDSNTLRVA 130


>gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 1140

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +LLVD +  +R     L       V               E LP+ ++ D  M       
Sbjct: 631 VLLVDDNADLRDYIARLLAPQ-HDVRVVPDGQA-ALEAVAEALPDLVITDVMMPRLDGFG 688

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R+ P   ++ V  L      E  + G  AGA+ +L+KPF+   L   +     + 
Sbjct: 689 LLRALRENPRTRELPVIMLSARAGEEARVQGLMAGADDYLVKPFSARELLAKVGAHLALA 748

Query: 122 KSKDE 126
           + + E
Sbjct: 749 RLRRE 753


>gi|332559683|ref|ZP_08414005.1| response regulator receiver protein [Rhodobacter sphaeroides WS8N]
 gi|332277395|gb|EGJ22710.1| response regulator receiver protein [Rhodobacter sphaeroides WS8N]
          Length = 418

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S   R++       +G+ V EA +  EA   C+   + + ++ D  M G+  
Sbjct: 14  RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALCQGGDV-DIVLSDWMMPGMSG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
           LE    +R +P     +   L       +++ G   GA+ +L+KP   + LR  +R    
Sbjct: 73  LELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAPDELRARLRAGER 132

Query: 117 LPQMQ-KSKDENQFLD 131
           +  MQ +  D+NQ L+
Sbjct: 133 VLSMQAELVDKNQLLE 148


>gi|301060591|ref|ZP_07201426.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2]
 gi|300445294|gb|EFK09224.1| sigma-54 interaction domain protein [delta proteobacterium NaphS2]
          Length = 449

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+VD    +R+  +    + G+ V  A     A    E     + +++D  M G+ 
Sbjct: 4   MPSILVVDDEAAIRESLKDWLMEDGYGVALAADGKTAVAMVE-GSQYDVILLDLKMPGMD 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     +  D  +  +      +  +   + GA  +L+KPF+ + +   ++++   
Sbjct: 63  GLETMRCIKEISPDSEILMMTAYASVDTAVQAMKEGAFDYLVKPFDPDEVELQIKKIVAH 122

Query: 121 QKSKDENQFL 130
           ++ + EN  L
Sbjct: 123 REMRFENIML 132


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESM 56
             ++L+V+           +    G  V  A +  EA E  E+     E   + +++D  M
Sbjct: 1012 RTILVVEDDVRNVFALSSVLEPTGARVEIARNGREALEALERSNAAGESAVDLVLMDIMM 1071

Query: 57   EGVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
              +  F  +A +R+ P    + +  L  +   +       AGAN ++ KP + E L   +
Sbjct: 1072 PEMDGFAAMAEIRRRPEWRRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1131

Query: 115  R 115
            R
Sbjct: 1132 R 1132



 Score = 91.0 bits (226), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+++      ++   L ++ GF    A++  +       E  P+ +V+D ++     L
Sbjct: 745 TILVIEDDPRFARILCDLAHEMGFQCVIASTGSDGLAAAL-EYGPSAVVLDMNLPDFSGL 803

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             +  +++ P    + V+ + +    + M      GA  + LKP  RE L  A+
Sbjct: 804 GVLDQLKRNPATRHIPVHVVSV---ADYMQEAMERGAIGYALKPVKREELEQAL 854



 Score = 75.2 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+     R+   HL    G  +  A +  +A +   K    + +V+D  +    
Sbjct: 865 MRRVLVVEDDARQRESVHHLLATDGVEIVGAATARQALDLL-KGSTFDCVVMDLHLPDLN 923

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94
             E +  + +    +   V                R
Sbjct: 924 GYELLQQMAEQEEVSFPPVIVYTGRNLSRDEEQQLR 959


>gi|126463630|ref|YP_001044744.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105294|gb|ABN77972.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 418

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S   R++       +G+ V EA +  EA   C K    + ++ D  M G+  
Sbjct: 14  RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALC-KGGDVDIVLSDWMMPGMSG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
           LE    +R +P     +   L       +++ G   GA+ +L+KP   + LR  +R    
Sbjct: 73  LELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAPDELRARLRAGER 132

Query: 117 LPQMQ-KSKDENQFLD 131
           +  MQ +  D+NQ L+
Sbjct: 133 VLSMQAELVDKNQLLE 148


>gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
 gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
          Length = 238

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    +RK+        G++V EAT+  +  E  +     + +++D  +  +   
Sbjct: 4   RVLVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDY-SCVLLDVHLPMLNGK 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R+        V  +  + D +  + G   GA+ +++KPF+   L   +  + Q 
Sbjct: 63  TILAELRK---TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQR 119

Query: 121 QK 122
            K
Sbjct: 120 TK 121


>gi|312959224|ref|ZP_07773742.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           fluorescens WH6]
 gi|311286484|gb|EFQ65047.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
           fluorescens WH6]
          Length = 465

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +  +        G  VF A +   A +  E+E   + ++ D  M G+   
Sbjct: 4   NILVVDDEPKLCDLLASALGQNGIQVFIAGNGLHALKVLEQED-IDLVISDWRMPGMDGP 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A ++       V V  +      +  +   R GA  ++ KPF+ + L   + +  Q 
Sbjct: 63  ALLAEIKVR--YPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 120

Query: 121 QKSKDENQFLDA 132
           +    +N  L A
Sbjct: 121 RDILRDNARLRA 132


>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+  H + ++  H     GF +  A    E     ++    + +++D  +    
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSY-DLVLLDIMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F+  +R+    ++V V  +  +        G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GMDFLKIIREK---SNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|228942401|ref|ZP_04104939.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975334|ref|ZP_04135890.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981970|ref|ZP_04142264.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777731|gb|EEM26004.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784316|gb|EEM32339.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817242|gb|EEM63329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 219

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIA 64
           VD    +R + R      G+ V  A    EA E   +   P+ L++D  +      E + 
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTDGYELLR 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + +  K  
Sbjct: 60  LFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117

Query: 125 D 125
           +
Sbjct: 118 E 118


>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 236

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + 
Sbjct: 73  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +  +      GF VF A +  EA E           ++D  M  +  
Sbjct: 14  NSILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 73  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 129

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 130 RYTYFNQN 137


>gi|256829655|ref|YP_003158383.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578831|gb|ACU89967.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 979

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVLE 61
            +LLVD +   ++V   +  D G +   A +  EA +  E+   P + +++D +M  +  
Sbjct: 852 RVLLVDDNLFNQEVACAILEDVGAVTAVAFNGLEALQRLEEAKDPYDVVLMDMAMPVMDG 911

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R M    D+ +  +          A   AG +  L KP +       +R   +
Sbjct: 912 LEASRRIRSMEKYRDLPIIAMTANAMKGDREACLAAGMSDHLAKPIDITEFYAVLRRCVR 971



 Score = 76.8 bits (189), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 6/116 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKEL-LPNYLVIDESMEGVLE- 61
           +L+VD +    +         GF      S  +A     ++    + +++D  M  +   
Sbjct: 707 VLVVDDNPAALQSLVLCVTRLGFACEAVGSGQQALTAMLRDPGRFSLVILDWDMPELDGP 766

Query: 62  -FIAHVRQMPLGTDVFVY--YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
             ++ +R   L  DV V    L    D +        GA   L+KP     L  A+
Sbjct: 767 TTLSRLRATGLPDDVPVLLAALSCHEDPQGR-EIRDIGAAGQLIKPVTTFGLLDAI 821


>gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 221

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+++    +  + +     + + VF   +   A E   KEL P+ +++D  +    
Sbjct: 1   MNKVLIIEDDKEICFMIKDHLEKYNYQVFFTFTGANALERV-KELTPDLIILDLMLPFIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM-REL 117
             E I  +R+    ++V V  +  +      +   R GA+ +L KPF+ + L   + R L
Sbjct: 60  GDELIRTIRK---FSNVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNL 116

Query: 118 PQMQK 122
            + QK
Sbjct: 117 LRSQK 121


>gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4]
          Length = 224

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   +       + +++D  +  +   
Sbjct: 2   RILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEG-HYLGDTEPYDAVILDIGLPTMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  + V  L     +   ++G  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRR 118


>gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family
           [Pseudomonas fluorescens Pf0-1]
          Length = 241

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+VD    +  + +  F   G+ V  A    EA      +  P+ +++D  + G   L
Sbjct: 8   RLLIVDDDGEILSLLKKFFVQHGYQVDVAAHG-EAMWAAIAQARPDTIILDLMLPGEGGL 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR       + +  L    +    I G   GA+ +L KPF  + L   +R L + 
Sbjct: 67  SLCQKVRAQMG---IPIIMLTAMAELSDRIVGLELGADDYLTKPFAPQELLARVRALQRR 123


>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
 gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
          Length = 276

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  + +   +  G+ V  A    EA    +K + P+ LV+D  +  V   
Sbjct: 52  RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDK-VGPDVLVLDIMLPDVDGL 110

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R           +L         + G  +GA+ ++ KPF+ E L   +R L +   
Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170

Query: 123 SKDE 126
             + 
Sbjct: 171 HLER 174


>gi|117918934|ref|YP_868126.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. ANA-3]
 gi|117611266|gb|ABK46720.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella sp. ANA-3]
          Length = 350

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LL+VD +    ++   + +D  + +  ATS  +A +      LP  +++D  M  +  F 
Sbjct: 10  LLVVDDTPDNIQIIHGILSDQ-YTIRAATSGEKALKLASTHPLPELILLDVMMPEMDGFE 68

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +++ P+ + + V ++  + D      G   GA  ++ KP +   L+   +    + 
Sbjct: 69  TCRRLKRDPITSKIPVIFVTAKTDTIDEQTGFELGAVDYISKPISPAVLKVRTQTHLALS 128

Query: 122 KSKDENQFL 130
               + + L
Sbjct: 129 NQARQLEAL 137


>gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 242

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    +  +        G     A    EA     +   P+ L++D  M  +    
Sbjct: 16  VLIAEDEAEIADILAAYLQRHGLRSLHAADGREALAM-HQAFKPDLLLLDVQMPQLDGWQ 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            ++ +R      D  V  L         + G R GA+ +++KPFN   +   ++ + +  
Sbjct: 75  VLSEIRARG---DTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRRT 131

Query: 122 KS 123
           ++
Sbjct: 132 QA 133


>gi|329960508|ref|ZP_08298896.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
 gi|328532738|gb|EGF59525.1| response regulator receiver domain protein [Bacteroides fluxus YIT
           12057]
          Length = 375

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD       + + L  +  F +  A++  +A E  +KE  P+ +++D  M      
Sbjct: 11  KILIVDDVMSNVLLLKVLLTNEKFTIATASNGRQALEQVDKEN-PDLILLDVMMPDLSGF 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P   ++ + +L        ++ G + GAN F+ KPFN+E L   +     +
Sbjct: 70  EVAQQLKANPATAEIPIIFLTALNSTADIVKGFQVGANDFISKPFNKEELIIRVTHQISL 129

Query: 121 QKSKD 125
             +K 
Sbjct: 130 VAAKR 134


>gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 234

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +R        +  + V  A    +A E        + +++D  M  V   
Sbjct: 5   KILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNE-IHLVIMDLMMPNVTGE 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM-- 120
            A ++     + V +  L  + +    + G   GA+ ++ KPFN   L   +    +   
Sbjct: 64  EAILKIREK-SYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLY 122

Query: 121 -QKSKDENQF 129
             +SK+EN+ 
Sbjct: 123 KYQSKEENER 132


>gi|290352249|dbj|BAI78835.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 146

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 251

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +           GF V  A    +       E     ++ D  + G+   
Sbjct: 30  RILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVI-DVMLPGMDGL 88

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R+  +  +  +  L  +   E  + G   G++ ++ KPF+   L   ++ L + 
Sbjct: 89  KVIEELRRRKV--NTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRR 146

Query: 121 QKSKDENQFLD 131
             S  E   L 
Sbjct: 147 STSASEPTRLS 157


>gi|281425218|ref|ZP_06256131.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella oris F0302]
 gi|281400684|gb|EFB31515.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella oris F0302]
          Length = 1295

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            S+L+VD +             +   VF A    EA     ++  P+ +V D  M  +   
Sbjct: 1032 SVLVVDDNTDFLGFLHTSLQTYFRRVFRARDGKEALCLLRQQ-QPDLVVSDVMMPVMDGY 1090

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +++    + + V  L  + D E    G + GA++++ KPF+ E L   +    + 
Sbjct: 1091 QLCQTIKEDIEISHIPVVLLTAKSDAESQTIGYKLGADAYIAKPFDIELLLSVIEMQLRR 1150

Query: 121  QKSKDE 126
            ++   +
Sbjct: 1151 RELFRQ 1156


>gi|260222414|emb|CBA31954.1| Chemotaxis protein cheY [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 134

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L VD S  +RK+        G+ V EA    +A E  + +   + ++ D++M    
Sbjct: 15  MPLILAVDDSPSMRKMVSFTLTGAGYQVVEAVDGQDAYEKAQTQT-FDLVLTDQNMPRLD 73

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L     +R+ P      +  L  E       AG  AGA  +L+KPF+   L   ++++ 
Sbjct: 74  GLGLTRKLREHPQFKTTPILMLTTESSDLMKQAGRAAGATGWLVKPFDPAKLLDVIKKVI 133

Query: 119 Q 119
           +
Sbjct: 134 R 134


>gi|258516238|ref|YP_003192460.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779943|gb|ACV63837.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 232

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +++ D    +R++ +      G+ V +A +  +  +   ++   + L++D  M      
Sbjct: 5   KIMVADDEERIRRLVKMYLEKEGYEVGQAINGEDVLKQLGQDASWDLLLLDLMMPETDGW 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    +D+ +  L    D    + G   GA+ ++LKPF+   L   ++ L + 
Sbjct: 65  QVCRELRKK---SDIPIIMLTARGDEIDRVLGLELGADDYVLKPFSPRELVARIKALLRR 121

Query: 121 QKSKD 125
            + K 
Sbjct: 122 VRRKQ 126


>gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +         D GF V  A    EA    +K    + L++D S++   
Sbjct: 1   MPKILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKY-DLLLVDISLKDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F   +  R+     D+ V +L    D   ++ G   GA+ +++KPF    L   +R+  
Sbjct: 60  GFAVCSAAREN---NDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKAL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+++  H +RK+ +  F   GF VFE     +  E   K    + +++D  +  +   
Sbjct: 2   NILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVF-KNNNIDIVILDIMIPYLDGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V +  L  + + E  + G   GA+ ++ KPF+ + L   ++ L + 
Sbjct: 61  KVCKSIR---DLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKR 117


>gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
 gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL+D    +  + ++     G  V  A    E      +E  P+ +++D  M  + 
Sbjct: 1   MSKILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALARQE--PDLILLDIMMPDMN 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R   L     + +L  +      I     G + F+ KPF    L   +    
Sbjct: 59  GFEVCRAIRDQIL---CPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANL 115

Query: 119 QMQKSKDEN 127
           + ++   EN
Sbjct: 116 RREQRSQEN 124


>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
            ++L++D    + ++      + G+ +++A    EA          + +++D  M     
Sbjct: 4   RNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHML-SLYQIDLMILDIMMPKRNG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    VR+      V +  L  + +    I G   GA+ +++KPFN   L   ++ L +
Sbjct: 63  LEVCQQVREE---NTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLR 119

Query: 120 MQKSKD 125
               + 
Sbjct: 120 RSSFQQ 125


>gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +LLV+    +  + +      G F V       E  +   K+   +  ++D  M   
Sbjct: 1   MKRILLVEDDPNLGLLLQDYLQLKGKFDVVLCADGEEGLKAFSKQE-FDLCILDVMMPKK 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F        +  +V + +   +   E   +    G + ++ KPF  E L   +  L +
Sbjct: 60  DGFTLGKEIRKINQEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALLK 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|198277154|ref|ZP_03209685.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135]
 gi|198269652|gb|EDY93922.1| hypothetical protein BACPLE_03362 [Bacteroides plebeius DSM 17135]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+MV  A S  EA +   +    N +++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLEMEGYMVDTANSAEEALKL--ELPRYNLILLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++     ++ + ++  +      + G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMMKKNKDTQNIPIIFITAKDTENDTLTGFNLGADDYISKPFSLREVIMRVKAVLRR 122


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    + ++ +       +      +  EA E  E+E   + + +D  M  V  
Sbjct: 19  RRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETY-DLIFLDVMMPFVDG 77

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R     +DV +  +      + ++ G R GA+ ++ KPF        +  + +
Sbjct: 78  FDACERIRAK---SDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILR 134

Query: 120 MQKSKD 125
               + 
Sbjct: 135 RVDMQK 140


>gi|218246085|ref|YP_002371456.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|257059134|ref|YP_003137022.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
 gi|218166563|gb|ACK65300.1| response regulator receiver protein [Cyanothece sp. PCC 8801]
 gi|256589300|gb|ACV00187.1| response regulator receiver protein [Cyanothece sp. PCC 8802]
          Length = 122

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D S   R++   L  D GF V  A    +A E   +E L + +++D  M  + 
Sbjct: 1   MTTILVTDDSTAQRELIAGLLVDNGFSVITAIDGEQALEKV-QETLFDLIILDVVMPKLN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++ P   ++ V     +          + GAN +++KPF+   L   +++L 
Sbjct: 60  GFQTCRKLKEDPKTQNIPVILCSTKNTDVDRYWAKKQGANEYIVKPFSPNELIEKVQQLL 119


>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ VF+A+   EA E  E+E + N +V+D  M  +  
Sbjct: 3   NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R     + + +  L  +V+    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  LEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119


>gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis]
 gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +     ++ G+MV  A     A    ++   P+ +++D  M G+  F 
Sbjct: 1   ILIVDDTPDNLALLSDALDEVGYMVLVALDGLSALNRIQR-RRPDLILLDAMMPGLDGFE 59

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++      D+ V ++    D E ++ G  AG   ++ KP N E +   +    +  
Sbjct: 60  TCQRIKADAATADIPVLFMTALTDSEHVVKGFAAGGIDYVTKPINTEEVLARVASHLRTA 119

Query: 122 KSKDENQ 128
           +     +
Sbjct: 120 RILQTAR 126


>gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
 gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
          Length = 247

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    +  V  +     G+ V  A    +     + +  P+ +++D  +      
Sbjct: 5   KVLIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKT-PDLVILDLMLPVVDGH 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R      D+ +  L  + +    + G   GA+ ++ KPF+ + L   ++ L + 
Sbjct: 64  EVCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKALVRR 123

Query: 121 QKSKD 125
           ++  D
Sbjct: 124 KRGAD 128


>gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R+         GF V EA++  +A     + +  + +++D +M G+   
Sbjct: 6   KVLVVEDDAGIRQSLFETLGALGFAVGEASNGEDAMLRL-RMVNYDAVLLDINMPGMGGK 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + V  L +  + + ++    AGA  ++ KPF    L   +R + +   
Sbjct: 65  ETCRRICQSYPHLPVVMLTVRDEEDDIVEALDAGAFDYVTKPFQIRELTARLRAVIRRSH 124


>gi|291548314|emb|CBL21422.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 222

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGASAILEASSHN-PDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ ++ KPF+ E L   +R   
Sbjct: 60  MEGV-EVIKKIRTWSNMPIIVISARSEDMDKIEALDAGADDYITKPFSVEELLARIRVSQ 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|257094697|ref|YP_003168338.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047221|gb|ACV36409.1| response regulator receiver protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 122

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+ D    +      L    GF V  A    EA      E  P+ +++D  M  +  
Sbjct: 3   KKILIADDEQNIVISIEFLLRREGFEVLVAGDGEEALARVRAE-RPDLVLLDVMMPRMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           F     +R  P  +   +  L  +    ++  G   GA+ ++ KPF+ + L   +R+L 
Sbjct: 62  FDVCQALRADPDLSGTRILMLTAKGRDTEVSKGLGLGADGYMTKPFSTKELLAEVRKLL 120


>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 233

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 1   MD--SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M   ++L+VD    +         +  + VF+  S   A E C K+   +  ++D  +  
Sbjct: 1   MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALE-CVKQEQIDLAILDVMLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F   ++++    +  V  L  +      I G   GA+ ++ KPF    L   ++   
Sbjct: 60  IDGF-EILKEIRKDHNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|226947054|ref|YP_002802127.1| response regulator with metal dependent phosphohydrolase activity
           (two-component) [Azotobacter vinelandii DJ]
 gi|226721981|gb|ACO81152.1| response regulator with metal dependent phosphohydrolase activity
           (two-component) [Azotobacter vinelandii DJ]
          Length = 347

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 4/132 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  ++L+VD       +   +          A +   A      +  P+ +++D  M G 
Sbjct: 1   MKATILVVDDVPENIDIFVEILAPH-HRTKVALNGERALRIARSDNPPDLILLDVMMPGL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
              +    ++  P    + V ++    +      G   GA  ++ KP +       +R  
Sbjct: 60  SGYQVCERLKADPDTRAIPVIFVTAMSETADEQRGLELGAVDYITKPISPPIALARVRTH 119

Query: 118 PQMQKSKDENQF 129
             + + + E   
Sbjct: 120 LALHRQRQELAR 131


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLV+   ++R+  +     +G+ V  A       E  + +  P   V+D  +     +
Sbjct: 6   RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQAD-APQVAVLDVMLPNLDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     + V V  L    D   ++ G  AGA+ +++KPF+   L   +R + + 
Sbjct: 65  ELCRRIR---GCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRR 121

Query: 121 QKSK 124
            + +
Sbjct: 122 LRRE 125


>gi|283851819|ref|ZP_06369096.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio sp. FW1012B]
 gi|283572735|gb|EFC20718.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio sp. FW1012B]
          Length = 453

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L VD    + +V        G+ V  A    EA E   K  +   ++ D  M G+  
Sbjct: 9   KTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVK-LVISDIRMPGMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G  + + +L         +   + GA  +L KPF+ + L   + E+    
Sbjct: 68  MRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFARA 127

Query: 122 KSKDENQFLD 131
              D  +  D
Sbjct: 128 AGNDATRERD 137


>gi|228911099|ref|ZP_04074906.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923993|ref|ZP_04087270.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835792|gb|EEM81156.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848603|gb|EEM93450.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 219

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIA 64
           VD    +R + R      G+ V  A    EA E   +   P+ L++D  +      E + 
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTDGYELLR 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + +  K  
Sbjct: 60  LFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117

Query: 125 D 125
           +
Sbjct: 118 E 118


>gi|256830591|ref|YP_003159319.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579767|gb|ACU90903.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 410

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L +D    VR+   +   DFG+ V +A    +  E       P+ +++D  M  +    
Sbjct: 9   VLTIDDDQAVRESLANFLEDFGYEVLQAGDGQQGLEVFAAN-RPDLILVDLRMPRMDGLQ 67

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELPQMQK 122
              R   L     +  +    D   ++   R GA  +L+KP  +   L  ++    +  +
Sbjct: 68  VLARVQELSPQTPIMVISGAGDIRDVVEALRRGAWDYLVKPIQDMNILLHSVETCLERAR 127

Query: 123 SKDEN 127
            + +N
Sbjct: 128 LQRQN 132


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++ +  + +V ++     G+ V  A           +E  P+ +V+D  +     
Sbjct: 3   QRILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSA-REHAPDLVVLDLGLPDFDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++   + V +  L      ++ +    AGA+ ++ KPF+ E L   ++   + Q
Sbjct: 62  AEVA-RRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQ 120

Query: 122 K 122
           +
Sbjct: 121 Q 121


>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 237

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +  + V+++ +   A E+ E E L +  ++D  +  +  F
Sbjct: 4   KVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKL-DLAILDVMLPDIDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        V  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  QICKKIREKYTY---PVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRR 119

Query: 121 QK 122
            K
Sbjct: 120 YK 121


>gi|224541825|ref|ZP_03682364.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525248|gb|EEF94353.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM
           15897]
          Length = 236

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+   ++R + +  F    + V EA    +A     ++   + +++D  M G+ 
Sbjct: 17  MYKLLVVEDEVLIRDIIKEYFAARDYEVIEAVDGYDALNKVNQD--IDMVLLDIMMPGMD 74

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    +      D+ + ++    + + M+ G   GA+ ++ KPF    L    + +   
Sbjct: 75  GYETCKKIREKY-DMPIIFISALSETDNMLDGYHVGADDYITKPFKPSVLYAKCQAILNR 133

Query: 121 -QKSKDENQFL 130
            +K+K E++ +
Sbjct: 134 SKKTKKEDKEI 144


>gi|254425159|ref|ZP_05038877.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196192648|gb|EDX87612.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 380

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFG-FMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            +L VD       +   +  D   + +        A E       P+ +++D  M G   
Sbjct: 7   RILAVDDVPDNLFILESILADINEYDITCVEDGKTAIEKVVASP-PDLILLDVMMPGIDG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+      + +  +    D   +  G  +GA+ F+ KPF+ + L   +R L +
Sbjct: 66  YEVTRRIRENKSLPYIPILLVTAH-DHSSLAEGLDSGADDFIRKPFDIDELMARVRSLIR 124

Query: 120 MQKSKDEN 127
           ++ S DE 
Sbjct: 125 LKHSLDEQ 132


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
 gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+      +  R    + GF+V  A    E  +   +E     +++D  +  +  +
Sbjct: 2   KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESY-ELVILDVMLPLLDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R++    D  V +L    + E  + G   GA+ +L+KPF+   L   +R L + 
Sbjct: 61  -QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR 117


>gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 233

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    +  +   +E+LP+ ++ D  M      
Sbjct: 8   RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDGWQKA-QEMLPDLVISDVMMPRCDGY 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             +  +R+        V +L  +        G  AG + ++ KPF+ E L
Sbjct: 67  GLLKRMREDERLGGTPVIFLTAKGMTADRTEGYLAGVDDYIPKPFDPEEL 116


>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 240

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 6/117 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + KV        G+ V        A +   +E  P+ +V+D  + G+   
Sbjct: 14  RVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAA-REDEPDVVVLDLMLPGLDGV 72

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R     +D +V  L    +    + G   GA+ +L KPF+   L   +  +
Sbjct: 73  EVCRRLRA---FSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAM 126


>gi|114320304|ref|YP_741987.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226698|gb|ABI56497.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 247

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 4/124 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD    +R++        G           A     +    + L++D  + G   L
Sbjct: 4   NILIVDDDPGLRELLVDYLGQNGLEARAVPDG-TALWPALEAGPVDLLILDLMLPGDDGL 62

Query: 61  EFIAHVRQ-MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           E    +R        + V  L    +    I G   GA+ +L KPFN   L   +R L +
Sbjct: 63  ELCGQLRAADAPWRTLPVIMLTARGEETDRIVGLELGADDYLPKPFNPRELLARIRGLLR 122

Query: 120 MQKS 123
             + 
Sbjct: 123 RSRM 126


>gi|329849017|ref|ZP_08264045.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum
           C19]
 gi|328844080|gb|EGF93649.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum
           C19]
          Length = 252

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL++D    +R + +   ++    V        A          + LV+D  M G    
Sbjct: 8   RLLVLDDDAEMRALLQRYLSENHHQVRAVPD-ASALYRLLARESFDLLVLDLMMPGEDGL 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +    G  + +  L    D    + G   GA+ +L KPF    L   +  + + Q
Sbjct: 67  AVCRKLRGEGQMIPIIMLTARGDPVDRVLGLEMGADDYLAKPFLPRELLARIEAVRRRQ 125


>gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  +      G+    A    +A +       P  +V+D  M  +   
Sbjct: 12  RILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKV-GSYDPELIVLDVLMPRMDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
            A  R    G  + +  L         + G  AGA+ +L+KPF  + 
Sbjct: 71  TAARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDE 117


>gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++   ++ +  + +  + GF     +   E      K    + L++D  + G+ 
Sbjct: 1   MK-ILVIEDEFLLSESVKSILTEHGFEADTVSDGAEGL-IYAKSGAYDLLILDVMLPGMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +       + +  L    +    + G  AGA+ +L KPF+   L   +  L + 
Sbjct: 59  GIALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNALLRR 118

Query: 121 QKSK 124
           Q ++
Sbjct: 119 QGAE 122


>gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 7   RILIIEDEIKIATYLVKGLKESGYQAECIHLGLQGLEMLKRDQY-DLLILDVMLPDIDGW 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 66  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 122

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 123 QQYLQENEL 131


>gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLL++    +R       +  G  V  A +  +  E   +E  P+ +V+D  + G+  F 
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLPGIDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + +  
Sbjct: 66  VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRG 122

Query: 122 KSKDEN 127
           + +  +
Sbjct: 123 ERESTD 128


>gi|126662822|ref|ZP_01733821.1| two-component system response regulator [Flavobacteria bacterium
           BAL38]
 gi|126626201|gb|EAZ96890.1| two-component system response regulator [Flavobacteria bacterium
           BAL38]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+    +  +         F V    +  EA +   KE   +  V+D  +  +  
Sbjct: 4   KRILYVEDDETLAFLTADNLEQH-FDVTHCNNGKEAFQLFCKET-FDLCVLDIMLPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           ++ + +L  +   E  I G + GA+ +L+KP++ E L   +       
Sbjct: 62  FEIATEIRKRNQEIPIIFLSAKTMKEDRIKGLKLGADDYLVKPYSIEELILKIEIFLNRS 121

Query: 122 KSKDENQ 128
           +   +N+
Sbjct: 122 QKSADNK 128


>gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803]
 gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61
            LLLV+    +  V         ++V        A  + ++  +     + D  + G+  
Sbjct: 2   RLLLVEDEPDLGMVLEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +     + + +  L  +      + G  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121

Query: 122 KSKDENQF 129
                 Q 
Sbjct: 122 PELQPQQL 129


>gi|134299411|ref|YP_001112907.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum reducens MI-1]
 gi|134052111|gb|ABO50082.1| response regulator receiver modulated diguanylate cyclase
           [Desulfotomaculum reducens MI-1]
          Length = 419

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++L+VD    + +  +      GF V EATS  EA    +++ + + ++ID  M      
Sbjct: 128 TVLVVDDDATLVQAVKERLTLDGFEVLEATSAREAVSILKRKQVIDLMIIDIVMPEGNGF 187

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R+  +  D  + ++  E   +K + G + GA+ +++KP + + +   ++ +   
Sbjct: 188 ELCAKIRKEKVYEDTPIIFMTAETSLDKKLEGFKIGADDYVVKPISLDEIAAKVQAIVNR 247

Query: 121 QKSKD 125
            +   
Sbjct: 248 TRRYK 252


>gi|148547224|ref|YP_001267326.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511282|gb|ABQ78142.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1155

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD                G +V    +  EA E  E+    + +++D  M  +  
Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ P    + +  +  +   +      +AGAN +L KP + + L   +R   
Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149



 Score = 86.8 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++      ++   L ++ G+    A    E  E    + +P+ +++D  +     L 
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA-AQYIPDAILLDMRLPDHSGLT 823

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117
            +  +++      + V+ +      E  +      GA  + +KP +RE L+     L
Sbjct: 824 VLQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876



 Score = 62.1 bits (151), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLV+   + R+    L  D    +       +A     + +  + ++ID  +  +L 
Sbjct: 885  KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY-DCMIIDLKLPDMLG 943

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111
               +  +    +     V           +   ++  +R+    GA        + E L 
Sbjct: 944  NELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 996

Query: 112  FAMRELPQMQKSKDENQF 129
              +       +S+  N+ 
Sbjct: 997  DEVTLFLHKVESQLSNER 1014


>gi|332712423|ref|ZP_08432350.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348897|gb|EGJ28510.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 518

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+ D     R + R +  + G+ V +     +       EL P+ +++D  M  +  F 
Sbjct: 11  ILVADDDKQTRIMLRTIMENEGYNVEDVGDGQQCL-AAYTELKPDIVLLDAMMPVMDGFM 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A ++++       V  +    D   +    + GA  ++ KP     LR  +R L +  
Sbjct: 70  CCAQIQKLLKNESTPVLMITGLNDQASVDWAFQVGATDYITKPIQPSVLRKRVRRLIEAN 129

Query: 122 KSKDENQFLD 131
           +++   +  +
Sbjct: 130 RAEKTLRERE 139


>gi|330808379|ref|YP_004352841.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376487|gb|AEA67837.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 773

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+ + + + V + +    G  V  A    EA +  E + + + +++D +M  +  +
Sbjct: 651 RVLLVEDNPVNQLVAKGMLVKLGCEVTVAAHGGEALDQLE-QRVFDLVLMDCNMPVMDGY 709

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114
                +RQ    +D+ +  L      E+      AG N +L KPF RE L   +
Sbjct: 710 EASRQIRQSGRWSDLPIVALTANAMPEERERCRAAGMNDYLSKPFRREELAAVL 763


>gi|251790356|ref|YP_003005077.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247538977|gb|ACT07598.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 245

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    + ++ R      G     A    +A E     + P+ +++D  M  V    
Sbjct: 18  VLIAEDEPEIAEILRAYLTRNGLRTLHAADGRQALE-LHLSMKPDLVLLDVQMPLVDGWQ 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            ++ +R      D  V  L         + G R GA+ +++KPFN   +   ++ + +  
Sbjct: 77  VLSGIRLRG---DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVQAVLRRA 133

Query: 122 KSKDENQ 128
             + E Q
Sbjct: 134 GLRAERQ 140


>gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 220

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    + ++ +    + GF+V   ++   A E+   E     +V+D  + G    
Sbjct: 2   RLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENY-EVIVLDLMLPGKDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G    V  L  +   E  I G  AGA+ +L KPF+ + L   ++ L +   
Sbjct: 61  SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120

Query: 123 S 123
           +
Sbjct: 121 N 121


>gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL +    + +         G+ V    +   A +        + +V+D  +  + 
Sbjct: 1   MTHVLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHAGAA---DLVVLDLGLPDMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G    V  L    D   ++ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 58  GLEVARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRR 117


>gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D    +  +   L ++ G+ V+EA S  E+ E  E     +  ++D  +  + 
Sbjct: 1   MAKILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIE-NNKIDLAILDVMLPDIS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R+        V  L         I G   GA+ +++KPFN   +   ++   
Sbjct: 60  GFDVLQSIREKQFF---PVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQL 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRYQ 120


>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 220

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+    + +         G+ +             + E   + +++D  +  +   
Sbjct: 2   RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHET-FDLVILDLGLPRMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V  L      +  IAG  AGA+ +L+KPF+   L+  +R L + 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR 118


>gi|304408861|ref|ZP_07390482.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307302864|ref|ZP_07582619.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|304352682|gb|EFM17079.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306913224|gb|EFN43646.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 4/120 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   +            G  V  A +  +    C +   P+ +V+D  M  + 
Sbjct: 1   MSKILLVDDDPLFSMWLADALGTQGHEVACAENGVDGL-ACIESFAPDIIVLDLVMPQMN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++         V  +    + +  I G   GA+ FL KPF+ + L   +R L + 
Sbjct: 60  GF-ELLKARE--CSTPVLMISARDNEDDRITGYELGADDFLSKPFSIKELFVRLRALERR 116


>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++  + + +V +      G+ V +  +  +A     +E  P+ +++D  +    
Sbjct: 1   MANILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMF-RETQPDLVLLDIMLPEKN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++++   +   V  L    +    + G   GA+ ++ KPF  + +   +R + + 
Sbjct: 60  GWT-ILKEIRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRR 118


>gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 240

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR + +       + V  A     A    E +  P+ +++D ++   + F
Sbjct: 7   KILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFE-QFNPDLVILDVNLPDAIGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               + M     VFV  L    D    I G   GA+ +L KPF    L   +  + + Q+
Sbjct: 66  -NLCQDMQSRNGVFVLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQR 124

Query: 123 --SKDENQFL 130
             +  E + L
Sbjct: 125 VVTTAEQKRL 134


>gi|304316235|ref|YP_003851380.1| Fis family transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777737|gb|ADL68296.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 453

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+ D    +R   +    + G+++ EA +   A    E  +  + +++D  M    
Sbjct: 1   MRHILVADDEKNMRWALKKALFNDGYVIDEAENGAVALNKFESSIY-DLIILDIKMPEVN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +R      D+ V  +    + +  I   + GA  ++ KPF+   L+  + +  
Sbjct: 60  GIDVLKTIR--EKDKDIPVIVITAYGEIDTAIQAIKLGAVDYIQKPFDINELKLTIGKAL 117

Query: 119 QMQKSKDENQFLDA 132
           ++   K+E +FL  
Sbjct: 118 EITNLKEEVKFLRE 131


>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
 gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
          Length = 242

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 14  NSILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+   L   ++   +
Sbjct: 73  IELCRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLR 129

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 130 RYTYFNQN 137


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESME--G 58
           +++LLV+    +            + +  AT   +A +  E      N +++D  +    
Sbjct: 14  NTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLD 73

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  +RQ     D+ +  +         +AG  AGA+ ++ KPF  E L   +R + 
Sbjct: 74  GLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVML 130

Query: 119 QMQKSKD 125
           +  +++ 
Sbjct: 131 RHSQNQA 137


>gi|153004709|ref|YP_001379034.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter sp. Fw109-5]
 gi|152028282|gb|ABS26050.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. Fw109-5]
          Length = 459

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD   ++R          G+ V  A S  +A E       P+ +++D  + G+   
Sbjct: 7   RVLVVDDEKLIRWSVAERLQRSGYEVISAESGEQALELIAANP-PDVMLLDVKLPGIDGV 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R +    D+ V  +      +  +   + GA  FL+KPF  + L  A+       +
Sbjct: 66  QTLQRALAENADLIVLMMSAHSTVDVAVEAMKHGAVDFLVKPFPFQALDAAVERAIATAR 125

Query: 123 SKDENQFLDA 132
           ++ +   L +
Sbjct: 126 TRRQITALAS 135


>gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+      ++ + +    G+ VF A +   A E  +K+   + +V+D  M  + 
Sbjct: 1   MFQILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQH-IDLIVLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R      +  +  +  +   E    G  AG + +++KP N + +   ++ L 
Sbjct: 60  GYEFTKQLR--GSNDNTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALL 117

Query: 119 QMQKSKDENQF 129
           +  K  +E++ 
Sbjct: 118 RRAKIVNEHKL 128


>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 244

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++        G+ V  A +  +A +   +E  P+ +V+D  +      
Sbjct: 20  RVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAA-REFQPDAVVLDMMLPDFDGM 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R       V V +L  +   E  +AG  AG + ++ KPF+ E +   +R L + 
Sbjct: 79  EVLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRR 136


>gi|107028368|ref|YP_625463.1| two component AraC family transcriptional regulator [Burkholderia
           cenocepacia AU 1054]
 gi|105897532|gb|ABF80490.1| two component transcriptional regulator, AraC family [Burkholderia
           cenocepacia AU 1054]
          Length = 277

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD      ++   +       +  A    +A    +  + P+ +++D  M  +  F 
Sbjct: 22  ILIVDDRPNDLRLLTEILRTARCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +   P    + V  L    D E  IAG   GA  +++KPF    +   +R   +  
Sbjct: 81  ASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIVKPFEPAEVIARIRNHLKRT 140

Query: 122 KSKD 125
           +   
Sbjct: 141 RRSQ 144


>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+V+    +      L    GF          A    E+    + +++D  + G+     
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGA-DIVLLDVMLPGMSGTDV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R       V V  +         + G   GA+ ++ KP++   L   +R + + 
Sbjct: 61  CKQLRAKSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 115


>gi|171058147|ref|YP_001790496.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Leptothrix cholodnii SP-6]
 gi|170775592|gb|ACB33731.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Leptothrix cholodnii SP-6]
          Length = 364

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD       V   L     + V  ATS             P+ +++D  M G+   
Sbjct: 8   TVLIVDDDVDNLFVLTELLRPH-YRVLAATSGPACLRMANGAPRPDLILLDVMMPGLDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R+ P   DV V +L    D      G R GAN ++ KP     +   +R   + 
Sbjct: 67  AVLARLRENPCTHDVPVVFLTALSDPSDEDRGLRLGANDYITKPLKPAIVLARVRTQLEA 126

Query: 121 QKSK----DENQFLDA 132
           ++++    D N  L+A
Sbjct: 127 KQARDWMTDRNAALEA 142


>gi|168212632|ref|ZP_02638257.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715801|gb|EDT27983.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 234

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE   +  V+D  M  +   
Sbjct: 5   NILVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 232

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|159897999|ref|YP_001544246.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891038|gb|ABX04118.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 345

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D   + R     +    G+ +  A +          ELLP+ +++D  M  +  F
Sbjct: 6   TILIIDDLAVARASMNAVLQGEGYHLVFAENGLSGIAQAL-ELLPDTILLDVMMPDMDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R  PL  ++ V  +    D E  + G RAGA+ FL KP +   L+  ++ + ++
Sbjct: 65  EVCRQIRANPLLAEIPVVMVTALDDRESRLQGLRAGADDFLSKPIDSLELKTRLQTITRL 124

Query: 121 ---QKSKDENQFLDAI 133
              ++ +DE + ++ +
Sbjct: 125 NRYRRLQDERRQVERL 140


>gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1932

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +   +   V  A +  E     E     + +++D  M  +  
Sbjct: 1812 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTSDIDVVLMDVMMPEMDG 1871

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R+      + +  L  +           AGA+ ++ KP + E L   +R    
Sbjct: 1872 YETMQLIRKKEQFKALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWLY 1931

Query: 120  M 120
             
Sbjct: 1932 R 1932



 Score = 99.5 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      ++   +    GF V  A S     +   K+  P  +++D  +  +    
Sbjct: 1546 LLIIEDDVNFARILVDMARQHGFQVLTAQSGTAGLKLA-KDFQPMAILLDIRLPEMDGWT 1604

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             +  ++  P    + V+ + +    E    G + GA ++L KP   E +      +R   
Sbjct: 1605 VLDRLKHDPTTRHIPVHIMTV---EEGRQRGLQLGAIAYLQKPVTSEAISEALDKIRGFV 1661

Query: 119  QMQ 121
            + +
Sbjct: 1662 ERR 1664



 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +LL+V+   + R+    L  +         +   A E    +   + LV+D  +  +  
Sbjct: 1666 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQ-QFDCLVLDLGLPDMTG 1724

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E +  +++   G  + +         +      R  A + ++K   + E L  
Sbjct: 1725 FELMEQIKREANGATLPIIVYTGREISKNQETELRRIAETIIVKDVRSPERLLD 1778


>gi|319954447|ref|YP_004165714.1| transcriptional regulator, crp/fnr family [Cellulophaga algicola
           DSM 14237]
 gi|319423107|gb|ADV50216.1| transcriptional regulator, Crp/Fnr family [Cellulophaga algicola
           DSM 14237]
          Length = 355

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +  VR++   +     + V  A       E   K   P+ ++ D  M  + 
Sbjct: 1   MKKILLIEDNLDVREMTAEILELENYEVATAEKGKIGIEKA-KSFAPDLILCDIMMPIMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            +     + +          +L  + +   +  G   GA+ +L KPF  + L  A+  
Sbjct: 60  GYEVFEQLSKDHSTASTPFIFLTAKSERSDLRKGMTMGADDYLTKPFEAQDLIEAIEA 117


>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 242

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+VD    +R+         GF V  A     A        + + +V+D SM G+   
Sbjct: 9   RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGV-DAVVLDVSMPGISGV 67

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G DV V  L    D    IAG  AGA+ +++KPF+   L   +R L +  +
Sbjct: 68  DVVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGR 127


>gi|220906813|ref|YP_002482124.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863424|gb|ACL43763.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1977

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 3/117 (2%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
            +LL + +              G+ V  A +  EA +   +   P+ +++D  M GV    
Sbjct: 1859 ILLAEDNEANISTISSYLKAKGYRVLVAKNGQEAID-LGQAAQPDLILMDIQMPGVDGLS 1917

Query: 63   -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             I  +RQ P    + +  L              AGAN +L KP     L   +++L 
Sbjct: 1918 AIQQLRQAPSSAHLPIIALTALAMNGDRDRCLAAGANEYLSKPVKLSQLVILIQQLL 1974


>gi|220911753|ref|YP_002487062.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858631|gb|ACL38973.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 254

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+++  H +R++ R +    GF V  A+S  E      K + P+ + +D  +  +  F  
Sbjct: 8   LVIEDDHDIRELVRTVLTQAGFDVTVASSGAEGV-LVAKTISPDVITLDLGLPDIDGFEV 66

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             RQ+   +D ++  L    +    + G  +GA+ +L KPF    LR  +  + +  +S 
Sbjct: 67  S-RQIREFSDAYIVMLTARTEELDTLIGLESGADDYLTKPFRPRELRARVAAMMRRPRSA 125

Query: 125 DE 126
            E
Sbjct: 126 AE 127


>gi|110633701|ref|YP_673909.1| response regulator PleD [Mesorhizobium sp. BNC1]
 gi|110284685|gb|ABG62744.1| response regulator receiver modulated diguanylate cyclase
           [Chelativorans sp. BNC1]
          Length = 457

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      ++         + V  A S  +A + CE     + +++D  M G+  F
Sbjct: 4   RILVVDDVPANLRLLEARLLAEYYDVVTARSGPDAIDICESSK-IDVVLLDVMMPGMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  PL T + V  +         + G  AGA+ FL KP N   L   ++ L ++
Sbjct: 63  EVCRRLKADPLTTHIPVIMITALDQPSDRVRGLEAGADDFLTKPVNDLQLLTRVKSLTRL 122

Query: 121 QKSKDENQFLDA 132
           +   DE +   A
Sbjct: 123 KALTDELRLRAA 134



 Score = 74.1 bits (182), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESMEGVLE 61
           S+LL+D      +    +  D  F +       E      E+      +         L 
Sbjct: 157 SVLLIDEDKAAGRQLARMLQDH-FALDAVDDPQEGLVRAAERSYECIIVSSSFVAYDPLR 215

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             + +R M     V +     E D   +I G     N ++L+P  R+ L   +R   + +
Sbjct: 216 LCSQLRAMDRTRLVPIILFAGEGDETVIIRGLELAVNDYVLRPVERQELIARLRTQIRRK 275

Query: 122 KSKDENQ 128
           +  D  +
Sbjct: 276 RYNDSLR 282


>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L V+   ++R+  +      GF V       +  E       P+  ++D  + G+   
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAG-APDIALLDVMVPGMDGV 96

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + + 
Sbjct: 97  SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153


>gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHASSEII 128


>gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
 gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thermosipho africanus TCF52B]
          Length = 222

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R + +      G+ V EA S+ + R+        + +++D  +    
Sbjct: 1   MKRILIVEDDLSIRNILKKYLKSHGYEVDEAGSIVDFRKKLY-NDKFDLVLLDIMLPDGF 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D+ V  +         I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  SINELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARIKSYFRR 119

Query: 121 QKSKDE 126
               +E
Sbjct: 120 VSKNNE 125


>gi|42526008|ref|NP_971106.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
 gi|41816058|gb|AAS10987.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
          Length = 369

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 24/140 (17%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+V+    +    R      G+ V  A     A E  E +  P+ L++D  +    
Sbjct: 1   MNKVLIVEDDEGIADFLRFELEHEGYSVLHAGDGRTALELFESDT-PDILLLDIMLPQLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF------------- 105
            LE +  +R+    + V V  L    +    ++G  +GA+ +L KPF             
Sbjct: 60  GLEVLRRIRK---TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIGASNLDERLPV 116

Query: 106 -----NRETLRFAMRELPQM 120
                + + L      L   
Sbjct: 117 TDKGDDFDELAKTFNNLLSR 136


>gi|116686364|ref|YP_839611.1| two component AraC family transcriptional regulator [Burkholderia
           cenocepacia HI2424]
 gi|170734973|ref|YP_001774087.1| two component AraC family transcriptional regulator [Burkholderia
           cenocepacia MC0-3]
 gi|116652079|gb|ABK12718.1| two component transcriptional regulator, AraC family [Burkholderia
           cenocepacia HI2424]
 gi|169821011|gb|ACA95592.1| two component transcriptional regulator, AraC family [Burkholderia
           cenocepacia MC0-3]
          Length = 277

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD      ++   +       +  A    +A    +  + P+ +++D  M  +  F 
Sbjct: 22  ILIVDDRPNDLRLLTEILRTARCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +   P    + V  L    D E  IAG   GA  +++KPF    +   +R   +  
Sbjct: 81  ASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIVKPFEPAEVIARIRNHLKRT 140

Query: 122 KSKD 125
           +   
Sbjct: 141 RRSQ 144


>gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316]
 gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
           18RS21]
 gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR
 gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR
 gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae]
 gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
           18RS21]
 gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 224

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +  + L  D G+ V  A    +  E+    L  + +++D  +      
Sbjct: 2   RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLY-DLVLLDIMLPKRSGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G +  + +L  +      + G   GA+ ++ KPF  + L   +R   +   
Sbjct: 61  SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120

Query: 123 SKDENQF 129
               NQ 
Sbjct: 121 LIRANQL 127


>gi|331087248|ref|ZP_08336318.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408934|gb|EGG88395.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ V +A    EA +  +   + + L+ID  M  + 
Sbjct: 1   MFNVLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEV-DLLIIDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 60  GIRATLKIREKNS-LPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRR 118


>gi|326332294|ref|ZP_08198574.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
 gi|325950000|gb|EGD42060.1| sensor histidine kinase/response regulator [Nocardioidaceae bacterium
            Broad-1]
          Length = 1786

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD                G  V  A S     E  ++E   + +++D  M G+  
Sbjct: 1667 RRILIVDDDVRNVFALTSALEQHGIDVLYAESGEAGIEALQREPGVDLVLMDIMMPGMDG 1726

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R +P    + +  L  +           AGA+ ++ KP +   L    R   
Sbjct: 1727 LTAMRLIRDIPQFKSLPMIALTAKAMTGDREDSLAAGASEYITKPVDVADLLSLFRVWL 1785



 Score = 37.9 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 27   MVFEA--TSVCEAREFCEKELLPNYLVIDESM-EGVLEFIAHVRQMPLGTDVFVYY 79
             V     +S  EA +    +   + +V+D  + EG  + +  +R      D+ V  
Sbjct: 1548 EVETVFGSSPEEA-QAVLADREVDCVVLDLPLAEGGFDVLRWMRTHKRSKDIPVVL 1602


>gi|325912950|ref|ZP_08175324.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 60-B]
 gi|325477764|gb|EGC80902.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 60-B]
          Length = 245

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      +  +    A    EA      +     +++D  M  +   
Sbjct: 19  KVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMSGL 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   ++V +  +         I G   GA+ ++ KPFN   +   +R L +  +
Sbjct: 79  -DLIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSE 137


>gi|283834020|ref|ZP_06353761.1| KDP operon transcriptional regulatory protein KdpE [Citrobacter
           youngae ATCC 29220]
 gi|291070158|gb|EFE08267.1| KDP operon transcriptional regulatory protein KdpE [Citrobacter
           youngae ATCC 29220]
          Length = 225

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEADGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             S
Sbjct: 119 HAS 121


>gi|242280723|ref|YP_002992852.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
 gi|242123617|gb|ACS81313.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfovibrio salexigens DSM 2638]
          Length = 335

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 5/136 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L VD      +V R +  +  + +  A +   A +   K  +P+ +++D  M    
Sbjct: 2   MKKILCVDDEPNNLQVLRQILKEH-YQLIFAPNGTRALDAAAKH-MPDMVLLDIMMPDIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   D+ + ++    + +    G   GA  ++ KP +   +   ++   
Sbjct: 60  GYEVCEKLKADPRTKDITIIFVTAMSEVKDEAYGFDVGAVDYIQKPVSGAVVLRRVQTHL 119

Query: 119 QMQKSKD-ENQFLDAI 133
            + + ++ E    DAI
Sbjct: 120 NLVRVQELEKSQRDAI 135


>gi|115374136|ref|ZP_01461423.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
 gi|310820905|ref|YP_003953263.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
 gi|115368803|gb|EAU67751.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
 gi|309393977|gb|ADO71436.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
          Length = 547

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           MD +  L+VD    VR     L    G+ V  A++  +A E  E     + +++D  M  
Sbjct: 1   MDRIAVLVVDDEESVRTFLGELLGGAGYQVRCASNGAQALEMLE-GGSFDAVLLDVVMPE 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       R    G +  V  L      +  +   + GA+ +L KPF  + L   +    
Sbjct: 60  MSGLEVLRRYRSSGGNAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELEDVLARAL 119

Query: 119 QMQKSKDE 126
             +    +
Sbjct: 120 GTRAPARQ 127


>gi|94264871|ref|ZP_01288646.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454692|gb|EAT04957.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 362

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL- 60
            S+L+VD +     + + + +   + V  AT+   A +       P+ +++D  M  +  
Sbjct: 6   KSVLVVDDTQTNIDILKGILSQ-DYTVKVATNGRLALKVAMSAKPPDLILLDVMMPDMDD 64

Query: 61  -EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++      ++ V ++  + + E    G   GA  ++ KP +   ++  ++   +
Sbjct: 65  YEVCRLLKADEKTFNIPVIFVTAKSEIEDEALGFTLGAADYITKPVSAPIVQARVKTHLE 124

Query: 120 MQKSKDENQFLDAI 133
           M    D  + L+++
Sbjct: 125 MY---DRRRLLESM 135


>gi|26990466|ref|NP_745891.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985438|gb|AAN69355.1|AE016572_11 sensor histidine kinase/response regulator [Pseudomonas putida
            KT2440]
          Length = 1155

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD                G +V    +  EA E  E+    + +++D  M  +  
Sbjct: 1031 RKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDG 1090

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +RQ P    + +  +  +   +      +AGAN +L KP + + L   +R   
Sbjct: 1091 FEATRLIRQQPRWRKLPIIAVTAKAMKDDQQRCLQAGANDYLAKPIDLDRLFSLIRVWL 1149



 Score = 86.8 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+++      ++   L ++ G+    A    E  E    + +P+ +++D  +     L 
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELA-AQYIPDAILLDMRLPDHSGLT 823

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIA-GARAGANSFLLKPFNRETLRFAMREL 117
            +  +++      + V+ +      E  +      GA  + +KP +RE L+     L
Sbjct: 824 VLQRLKEQASTRHIPVHIIS----VEDRVEAAMHMGAVGYAVKPTSREELKEVFARL 876



 Score = 61.7 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLV+   + R+    L  D    +       +A     + +  + ++ID  +  +L 
Sbjct: 885  KHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIY-DCMIIDLKLPDMLG 943

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEV----DFEKMIAGARA----GANSFLLKPFNRETLR 111
               +  +    +     V           +   ++  +R+    GA        + E L 
Sbjct: 944  NELLKRMTAEDIRAFPPVIVYTGRNLTREEEADLLKYSRSIIIKGAR-------SPERLL 996

Query: 112  FAMRELPQMQKSKDENQF 129
              +       +S+  N+ 
Sbjct: 997  DEVTLFLHKVESQLSNER 1014


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
             L+VD    + +V         F V  A +  +A     ++L P+ +++D  +     L
Sbjct: 18  RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAI-AVARDLDPDVVILDIGLPSIDGL 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L         + G   GA+ ++ KPF+   L   +R + + 
Sbjct: 77  EVCRQLR---TFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRR 133

Query: 121 QK 122
            +
Sbjct: 134 PR 135


>gi|302189715|ref|ZP_07266388.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+       +        GF V  A +     +   ++  P+ +++D  +     
Sbjct: 4   KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + ++ VR     +D  V  +    D  + +   R GA+ +++KP+N   +   +  + +
Sbjct: 63  TDVLSAVR---RCSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLR 119

Query: 120 MQKSKDENQF 129
             +    N+ 
Sbjct: 120 RSQQNGNNER 129


>gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 219

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +R +        G  V EA    EA +F       + +V+D  +      
Sbjct: 4   KVLVVEDDPGIRMLVATTLQSAGLAVLEARDGVEAMDFI---PEADLVVLDVGLPRQSGW 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ      + V  L    D    + G  +GA+ +L KPF+   L   ++ L + 
Sbjct: 61  EVLEAIRQNFG--QLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALLRR 118


>gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
 gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
          Length = 237

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L++D    +R+         G+ V +A +  E  +    E + + +++D  +  +   
Sbjct: 14  RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDM-DLVILDIGLPDMEGH 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ    + V V  L +     + +     GAN ++ KPF  + L   +R L + 
Sbjct: 73  EVLEQLRQ---WSQVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLRT 129

Query: 121 Q 121
           +
Sbjct: 130 R 130


>gi|218246197|ref|YP_002371568.1| response regulator receiver modulated PAS/PAC sensor-containing
           diguanylate cyclase/phosphodiesterase [Cyanothece sp.
           PCC 8801]
 gi|218166675|gb|ACK65412.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Cyanothece sp. PCC 8801]
          Length = 715

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD      ++ R      G+ V    +   A    +  +  + +++D  +      E
Sbjct: 9   LLIVDDLPDNLRLLRDTLQGQGYKVRSCITGMMALRAAKAAVT-DLILLDIKLPDYDGYE 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V +L    +    + G   G   ++ KPF  E +   +     +Q
Sbjct: 68  ICRRLKADEQTAHIPVIFLSALNETFDKVQGFTVGGADYITKPFQIEEVLARVATHLSIQ 127

Query: 122 KSKDENQ 128
           + +   Q
Sbjct: 128 RLQTSLQ 134


>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF+         A     +E  P+ +++D  + G+
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAF-RESRPDIVLLDLMLPGM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R +   + V +  L  + D   ++ G  +GA+ +++KPF  + L   MR   +
Sbjct: 60  SGIDVA-RSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLR 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|118593336|ref|ZP_01550720.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434014|gb|EAV40671.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 239

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R++   +    GF + +A S  +  +   + + P+ +V+D  + G    
Sbjct: 7   TILIVDDDPEIRRLVGDVLRKEGFGIEQAMSGRD-MDAVLERVKPDAVVLDLMLPGEDGL 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       + + +L    D    + G   GA+ +++KPF        +R L + 
Sbjct: 66  SICRRLRADDT---LPILFLSARGDEVDRVVGLEIGADDYIVKPFAPREFVARVRALLRR 122

Query: 121 QKSKDE 126
                +
Sbjct: 123 SGQGRQ 128


>gi|21241501|ref|NP_641083.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106847|gb|AAM35619.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 239

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +RK+     +  G+ V  A +V E       +  P+ +V+D  M G     
Sbjct: 8   VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAE-MRSVMAQRRPDLIVLDVMMPGEDGLS 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A            V  L    +    I G   GA+ +L KP N   L   +R L +  ++
Sbjct: 67  AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 126

Query: 124 KDEN 127
            +E 
Sbjct: 127 SNEQ 130


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 3/118 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLVD + I   +   +    G  V  A +  E  E  E E   + +++D  M      
Sbjct: 789 KILLVDDNEINLYMMEAILLAAGAEVTLAENGQECLERLE-ESSYDLILMDVQMPVLDGY 847

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           E    +R+      + +  +      + +     AG N  + KPF  E L  ++ +  
Sbjct: 848 ETTRRIRKDEKYRALPIIAITANALSDDIEKCFEAGMNDHVAKPFKIEELDASIAKCL 905


>gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 237

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    + ++        G+ V  A +  +A+   ++ +LP+ +++D  + G  
Sbjct: 1   MSHVLVVEDESAIAELISINLRHAGYEVTVAATADQAQAAVDR-VLPDLVLVDWMLPGQS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+     R      ++ +  L    +    IAG  AGA+ +L KPF+ + L   MR + 
Sbjct: 60  GLQLARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMRAVL 119

Query: 119 QMQKSKD 125
           + +  + 
Sbjct: 120 RRKAPEA 126


>gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 231

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+VD    +     +     G+ V  A    EA E  E    P+ +V+D  M    
Sbjct: 1   MTKVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVES-FDPDVMVLDVMMPRLS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +     R++       +  L ++ D    + G   GA+ ++ KPF+   +   ++ L 
Sbjct: 60  GYDVC---RKLEDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALS 116

Query: 119 QMQK 122
           +  +
Sbjct: 117 RRSR 120


>gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 227

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR+  R   +  G+ V  A    EA E    E  P+ +V+D  M  +   
Sbjct: 2   RILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAE-RPDLMVLDVMMPRLDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
               R    G D+ +  L       + ++G  AGA+ +L KPF  E 
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEE 107


>gi|294788403|ref|ZP_06753646.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC
           29453]
 gi|294483834|gb|EFG31518.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC
           29453]
          Length = 228

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 6/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAR-EFCEKELLPNYLVIDESME-- 57
           M  +LLVD    + ++        G  V           E        + +++D  M   
Sbjct: 1   MSRVLLVDDDDTLTELLAEYLTAEGLEVNRMPDGESGVKEILHSGNSYDVVILDSMMPKM 60

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           G L+ +  VR       + +  L  + D    I G   GA+ ++ KP     L   +  +
Sbjct: 61  GGLDVLKTVRAQSK---IPIIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAI 117

Query: 118 PQMQK 122
            +  +
Sbjct: 118 LRRAQ 122


>gi|283778608|ref|YP_003369363.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Pirellula staleyi DSM 6068]
 gi|283437061|gb|ADB15503.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Pirellula staleyi DSM 6068]
          Length = 347

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+ D   +  ++  H     G+ V  A +  EA    ++   P  ++ D  M  + 
Sbjct: 1   MK-ILIADDDDLALEMLEHTLRRAGYEVETARNGREALARLKQVDAPRLVISDWEMPEMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E  A +R     + ++   L      E+++ G  AGA+ F+ KPFN   L   +R   
Sbjct: 60  GIELCAAIRSGGFDSYIYAILLTSHARPEEIVQGMSAGADDFVAKPFNTAELLVRIRAGA 119

Query: 119 QMQKSKDENQFLDAI 133
           ++   +     + A+
Sbjct: 120 RILSLETREMAIFAL 134


>gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + ++  +     G+    A    EA +   K   P+ +++D  M     +
Sbjct: 9   KILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKA-KVFRPDLIMLDIMMPNKNGI 67

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R++P   D  V +L    D +  I G   GA+ ++ KP   + L   +  L + 
Sbjct: 68  DTCREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRR 127


>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 224

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  +  +   
Sbjct: 2   RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATY-DLIVLDIMIPRIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         V  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119


>gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 224

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +  + +    D GF V  A           +E  P+ +++D  +  + 
Sbjct: 1   MKRILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRL-REAPPDLVILDLGLPDLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++ +G +V +  L      E+ +     GA+ +++KPF+   L   ++   + 
Sbjct: 60  GGEVA-RRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRH 118

Query: 121 QKSKDE 126
           ++  ++
Sbjct: 119 REGGEQ 124


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ + +A +     E  EK    + +++D  +  + 
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGE-IDLILLDIMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|28900003|ref|NP_799658.1| putative transcriptional regulator CpxR [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838791|ref|ZP_01991458.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           AQ3810]
 gi|260362138|ref|ZP_05775133.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           K5030]
 gi|260880582|ref|ZP_05892937.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896323|ref|ZP_05904819.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           Peru-466]
 gi|260899738|ref|ZP_05908133.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           AQ4037]
 gi|27597185|dbj|BAC55119.1| probable two-component response regulator [Vibrio parahaemolyticus]
 gi|28808286|dbj|BAC61491.1| putative transcriptional regulator CpxR [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747771|gb|EDM58665.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           AQ3810]
 gi|308085158|gb|EFO34853.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           Peru-466]
 gi|308092714|gb|EFO42409.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           AN-5034]
 gi|308110410|gb|EFO47950.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           AQ4037]
 gi|308114648|gb|EFO52188.1| transcriptional regulatory protein CpxR [Vibrio parahaemolyticus
           K5030]
 gi|328469988|gb|EGF40899.1| putative transcriptional regulator CpxR [Vibrio parahaemolyticus
           10329]
          Length = 221

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  D G+ V        A ++ EK  + + +++D  +  + 
Sbjct: 1   MSRVLIVDDDVPLCELLEVVLQDEGYTVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GMQVARRICQRFA-TPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRR 118

Query: 121 QKSKDENQFL 130
              + + Q +
Sbjct: 119 VGLERQRQTI 128


>gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 223

 Score =  131 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R + R       + V  A S  EA          + +++D  +     F 
Sbjct: 3   ILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEAL-KLHATQSFDLIILDLMLPDTTGFD 61

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +      D+ +  L         I G + GA+ ++ KPFN   L   ++ L + 
Sbjct: 62  LIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKR 118


>gi|284038429|ref|YP_003388359.1| Crp/Fnr family transcriptional regulator [Spirosoma linguale DSM
           74]
 gi|283817722|gb|ADB39560.1| transcriptional regulator, Crp/Fnr family [Spirosoma linguale DSM
           74]
          Length = 348

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++LL++ +  +R+    +    G+ V  A +     E       P+ ++ D  M    
Sbjct: 1   MKTILLIEDNEAIRENTAEILELTGYTVETAENGKLGVEKALA-RKPDLVICDIMMPVLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +    + P  + V   +L  + +   +  G   GA+ +L KPF+   L  A+    
Sbjct: 60  GYGVLHIFNKNPQLSGVPFIFLTAKTERNDLRKGMELGADDYLTKPFDESELLSAIEGRL 119

Query: 119 QM 120
             
Sbjct: 120 NR 121


>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
 gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +  V      +  + V +  +  EA   C +    +  ++D  +  +  F
Sbjct: 2   NILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALN-CIETTKIDLALLDVMLPDIDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L  +VD+   I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 61  EILKRIREKY-TFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117


>gi|194292019|ref|YP_002007926.1| response regulator in two-component regulatory system ompr family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225923|emb|CAQ71870.1| Response regulator in two-component regulatory system ompR family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 246

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G  V  A +  E R   +K  + + +V+D  + G     
Sbjct: 7   ILIVDDDREIRELVAAYLERSGMRVSLAANGREMRAALDKGSV-DLVVLDLMLPGEDGLA 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R      ++ V  L    +    I G   GA+ +L+KPF    L   +R + +  
Sbjct: 66  LCRDLRAGER-RNLPVLMLTARNEEADRILGLEMGADDYLVKPFAARELLARIRSVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|163814295|ref|ZP_02205684.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759]
 gi|158449930|gb|EDP26925.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759]
          Length = 244

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    +R +        G+ V EA    EA E        + +V+D  M      
Sbjct: 17  KVLVVDDEQDIRTLLNIYLKRLGYEVVEAADGVEAVETVRANSDIDLIVMDIMMPKLSGT 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+    + V V +L  +            G + FL KPF +      +  L + 
Sbjct: 77  EACEQIRE---FSSVPVLFLTAKTKEPDQNEAYVVGGDDFLPKPFTQNDFNRKVNALIRR 133

Query: 121 QKSKDENQFLDA 132
            +       +DA
Sbjct: 134 YRVYRGKSEVDA 145


>gi|149375903|ref|ZP_01893670.1| sensory box protein [Marinobacter algicola DG893]
 gi|149359783|gb|EDM48240.1| sensory box protein [Marinobacter algicola DG893]
          Length = 740

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD      +V         + +  ATS  +A    +K   P+ L++D  M  +   
Sbjct: 24  RVMVVDDEPTNIRVLSEALKS-DYDIIVATSAEQALRLLDKGERPHLLLLDIMMPDMDGL 82

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q      + V ++   +D      G  AGA  F+ KP N  ++R  +R    +
Sbjct: 83  EMCRRLKQRQELQHIPVIFITALMDTGSEEKGFEAGAVDFIRKPINIPSVRARVRTHISL 142

Query: 121 QKSKDENQFLD 131
           +   D    L+
Sbjct: 143 KGMLDHMVELN 153


>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    + ++        GF      +  EA E   +   P+ +++D  + G   
Sbjct: 5   QQILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEA-EDAIRTKTPDCVILDLMLPGKDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+    + V +  L   VD    + G   GA+ ++ KPF+   +   ++ + +
Sbjct: 64  LSICKDVRK---FSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|309803486|ref|ZP_07697579.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164370|gb|EFO66624.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 11V1-d]
          Length = 229

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 1/122 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++      +  +    A    EA      +     +++D  M  + 
Sbjct: 1   MVKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREALTKFRMDPSITCIILDIMMPEMS 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++   ++V +  +         I G   GA+ ++ KPFN   +   +R L + 
Sbjct: 61  GL-DFIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRR 119

Query: 121 QK 122
            +
Sbjct: 120 SE 121


>gi|301630365|ref|XP_002944292.1| PREDICTED: acetoacetate metabolism regulatory protein AtoC-like,
           partial [Xenopus (Silurana) tropicalis]
          Length = 467

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +  +     +  G  VF A +   A +  E+E   + ++ D  M G+   
Sbjct: 38  NVLVVDDEPKLCDLLSSALSQSGIQVFTAGNGLHALKVLEQED-IDLVISDWRMPGMDGP 96

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A ++       + V  +      +  +   R GA  ++ KPF+ + L   + +  Q 
Sbjct: 97  ALLAEIKVR--YPHLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 154

Query: 121 QKSKDENQFLDA 132
           +    +N  + A
Sbjct: 155 RDIMRDNARMRA 166


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+V+    + +         G++V +A    +  E    E   + +++D  +     +
Sbjct: 5   KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNEN-FDLIILDVMLPSLNGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ      V V  L  + +    + G   GA+ ++ KPF  E L   +R   + 
Sbjct: 64  EVLRRLRQNSE---VPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKH 120

Query: 121 QK 122
           ++
Sbjct: 121 KR 122


>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + +++D  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLDLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|288935841|ref|YP_003439900.1| response regulator receiver modulated serine phosphatase
           [Klebsiella variicola At-22]
 gi|290509868|ref|ZP_06549239.1| response regulator [Klebsiella sp. 1_1_55]
 gi|288890550|gb|ADC58868.1| response regulator receiver modulated serine phosphatase
           [Klebsiella variicola At-22]
 gi|289779262|gb|EFD87259.1| response regulator [Klebsiella sp. 1_1_55]
          Length = 404

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ S + R++   +   +G++V EA +   A    E + + + ++ D  M  +  
Sbjct: 4   QHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPV-SLVISDWEMPEMNG 62

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VR+   G  V++  L    D   +  G  AGA+ FL KP  +  LR  +    +
Sbjct: 63  LTLCREVRRRQFGHYVYLILLTAREDPGDLTQGFAAGADDFLSKPVEQSELRARLHAGAR 122

Query: 120 MQKSKDEN-----QFLDAI 133
           +   + +      +  +A+
Sbjct: 123 ILSLEADLAARNTRLSEAL 141


>gi|317054508|ref|YP_004118533.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316952503|gb|ADU71977.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 261

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    + +         G+    + S         K   P+ +++D  + G   
Sbjct: 27  THILIVEDDAEISRSLATFLQAKGYTATTSDSAEAGL-LFLKTHAPDLILLDLMLPGESG 85

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           L+F   +R         +  +    D    + G   GA+ +++KPF+   L   +R + +
Sbjct: 86  LDFCRKIRS---PDSPPIIMVTALDDPIDNVVGLELGADDYVIKPFDLNVLLARIRAVLR 142

Query: 120 MQKSKDENQ 128
              + +  Q
Sbjct: 143 RTSAIETAQ 151


>gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 228

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFND-FGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            ++L+VD  + +R+     F    GF + +A +  E     E E  P+ +++D  M  + 
Sbjct: 5   KTILIVDDDNDLREALAEQFERHEGFSIIQAHNATEGMNLAEAEK-PDLVILDVEMPDMD 63

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+   G  V V  L  +     M+ G  +GAN ++ KPF    L   +R   
Sbjct: 64  GRDACKLMRKH--GLRVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAHL 121

Query: 119 Q 119
           +
Sbjct: 122 R 122


>gi|330941199|gb|EGH44073.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 229

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+       +        GF V  A +     +   ++  P+ +++D  +     
Sbjct: 4   KRILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDM-HRQWKPDLILLDVMLPLVSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + ++ VR     +D  V  +    D  + +   R GA+ +++KP+N   +   +  + +
Sbjct: 63  TDVLSAVR---RCSDTPVIMVTAMGDEPEKLCALRYGADDYVVKPYNPREVVARVHAVLR 119

Query: 120 MQKSKDENQF 129
             +    N+ 
Sbjct: 120 RSQQNGNNER 129


>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 230

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +  +      + GF V +A +  +A +  E E   + +++D  +E +  F
Sbjct: 4   KIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAEN-FDLMILDIMLEDMDGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+        +  L   +D    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 63  SVCKKIREKHYF---PIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRR 119

Query: 121 QKSKDENQFLD 131
            +  ++ + + 
Sbjct: 120 SQKYNKTEKIK 130


>gi|295687869|ref|YP_003591562.1| response regulator receiver protein [Caulobacter segnis ATCC 21756]
 gi|295429772|gb|ADG08944.1| response regulator receiver protein [Caulobacter segnis ATCC 21756]
          Length = 121

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L VD S  +R   +   +  G+ V EA +  E  +        + +V D +M  + 
Sbjct: 1   MSAILTVDDSASIRAAIKIALSSEGYNVTEAANGAEGLDKASAGG-FDLIVTDLNMPVMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R  P G  V + +L  E D +       AGA  +L KPF  + L   ++++ 
Sbjct: 60  GLTMIRQLRARPAGAGVPIIFLTTESDADVKAEAKAAGATGWLTKPFEPDQLVRVVKKVL 119


>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 236

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    ++ +     N   + V    +  +A ++       + +V+D  + G+   
Sbjct: 14  RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATY-DLIVLDIMIPGIDGL 72

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               R         +  L  +   +  + G   GA+ +L+KPF  + L   +R L + +
Sbjct: 73  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 131


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD +     +   +    G  V    S  +A E   K   P+ +++D  M G+  F
Sbjct: 9   RIMIVDDTPANLNLLMDMLLKKGHQVVAFPSGQQALEAASKTP-PDLILLDIRMPGMDGF 67

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++Q P   D+ V ++    D    +     G   ++ KPF  E +   +    ++
Sbjct: 68  EVCRKLKQDPDLQDIPVIFISALQDVSDKVQAYNTGGVDYVSKPFQPEEVYARVETHLRL 127

Query: 121 QKSKDENQ 128
            +   E++
Sbjct: 128 NRLLRESE 135



 Score =  103 bits (259), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+ +   + R     +    G  V       +           + +++D  + G    
Sbjct: 522 RILIAEDDSLSRIFFEKILQGEGHRVESVEHGDQVMSRLAMNDY-DCILMDIELPGIRGD 580

Query: 61  EFIAHVRQMPLG---TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           E    +R         D+ ++ +             +AG + +L KP   +  R A ++ 
Sbjct: 581 EITTRIRAADNLGAKKDIPIFAVTAYTQPGDREHFLKAGMDDYLPKPLGIQEFREAFKKH 640


>gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
 gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+       + G+ V  A +  E  E  E     +  ++D  M  +   
Sbjct: 4   TILVVEDEQGIREAIGIYMKNQGYNVILAANGKEGLEKIETND-IHLAIVDIMMPVMDG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I+ V +     D  + +L  + +    I G   GA+ ++ KPF    L   +R   +  +
Sbjct: 62  ISMVMEARKHHDFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRRYE 121

Query: 123 S 123
            
Sbjct: 122 Q 122


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 18/147 (12%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L++D +    ++   L    G+ V   T         +    P+ +++D +M  +   E
Sbjct: 8   ILVIDDTPENLQLLTRLLTAQGYKVRSVTKGSTGCRAAQSAP-PDLVLLDVNMPEMNGYE 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ-- 119
               ++  P   D+ V ++    D  + +     G   ++ KPF  E +   +       
Sbjct: 67  VCQQLKARPETQDIPVIFISAHEDVLEKVKAFSMGGVDYITKPFQVEEVLARVEHHLTIQ 126

Query: 120 -------------MQKSKDENQFLDAI 133
                         Q+ ++  Q L A+
Sbjct: 127 RLQRQLQHQNAQLQQEIQEREQVLQAL 153


>gi|160884454|ref|ZP_02065457.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483]
 gi|237718085|ref|ZP_04548566.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174656|ref|ZP_05761068.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293369752|ref|ZP_06616328.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299145993|ref|ZP_07039061.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
 gi|315922919|ref|ZP_07919159.1| two-component system response regulator [Bacteroides sp. D2]
 gi|156110193|gb|EDO11938.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483]
 gi|229452506|gb|EEO58297.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292635174|gb|EFF53690.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298516484|gb|EFI40365.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
 gi|313696794|gb|EFS33629.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 231

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +  + +    +  F++  A    E       EL P+ LV D  M  +  F
Sbjct: 7   TVLLVEDEQTLAMIIKDTLEENDFIIHTANDGEEGLSLFF-ELHPDVLVADVMMPKMDGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R         V +L        ++ G   GAN +L KPF  + L   ++ L     
Sbjct: 66  EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGIQELIIRIKALMGKAF 125

Query: 123 SKDENQ 128
              EN+
Sbjct: 126 LFTENK 131


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ + +A +     E  EK+   + +++D  +  + 
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEA-DLVLLDIMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 222

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+    +    +    +  F V  A +     E        + L++D  + G   +
Sbjct: 2   RILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSY-DLLLLDWMLPGISGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E     R+    +D  + +L  +   ++ I G ++GAN ++ KPF+ E L   +R   + 
Sbjct: 61  ELTRQFRKQ--FSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRA 118

Query: 121 QKSKDE 126
           +K   E
Sbjct: 119 KKGAKE 124


>gi|88603985|ref|YP_504163.1| response regulator receiver domain-containing protein
           [Methanospirillum hungatei JF-1]
 gi|88189447|gb|ABD42444.1| response regulator receiver domain protein (CheY-like)
           [Methanospirillum hungatei JF-1]
          Length = 436

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+V+ +    +  RHL    G  V  + +  EA E  E E  P+ ++ D  M  +    
Sbjct: 11  ILIVEDNRTQAEYLRHLLEKRGHQVTVSQNGFEALERIE-EKRPDIILTDVMMPDMDGYT 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               V+Q     D+ V  +        +I G  AGA++F++KP++ E +   +  + Q +
Sbjct: 70  LCKTVKQHEKFHDIPVILVTHLYSPVDVIKGLEAGADNFIIKPYDPEYIFSRITGIMQAK 129

Query: 122 K 122
            
Sbjct: 130 N 130


>gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
          Length = 233

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+++    ++++        G++V  A    E  E   K    + +++D  +    
Sbjct: 10  MNKILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSY-DVVLLDLMLPKKS 68

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E     R++   TD  +     + +    +     GAN ++ KPF  E L   +R + 
Sbjct: 69  GKELCQEFRKL---TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVT 125

Query: 119 QMQKSKDENQ 128
           + +++  + Q
Sbjct: 126 RNRETSSDKQ 135


>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + ++++  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLNLMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+      +     E    +   + +++D  +  +  
Sbjct: 4   KKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDY-DLILLDLMLPELDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D  +  +         +AG   GA+ ++ KPF  E L   +R   + +
Sbjct: 63  FEVA-RRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121

Query: 122 K 122
           +
Sbjct: 122 E 122


>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
 gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
          Length = 229

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            + LV+    +     +     GF V        A E       P+  ++D  +  +  F
Sbjct: 5   RIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAA-AHQAPDVAILDVGLPDISGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R +     + V +L    D    + G   GA+ ++ KPF+   +   +R + + 
Sbjct: 64  ELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121


>gi|227494938|ref|ZP_03925254.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831390|gb|EEH63773.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 226

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M +++LV+    + +      +  G+ V    +   A    E     +  ++D  +  + 
Sbjct: 1   MTTVILVEDDSAIAEPLARALSREGYDVRSHDTGAAALTEVEAA---DLFILDLGLPDMD 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     LG    +  L    D   M+ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 58  GLDVARHVRKLGKTTPILILTARADEIDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117

Query: 121 QKSKDENQFLDA 132
             S++  + L A
Sbjct: 118 IGSEEPEEDLVA 129


>gi|197303952|ref|ZP_03168984.1| hypothetical protein RUMLAC_02689 [Ruminococcus lactaris ATCC
           29176]
 gi|197296920|gb|EDY31488.1| hypothetical protein RUMLAC_02689 [Ruminococcus lactaris ATCC
           29176]
          Length = 236

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+++    ++   R +     + V  A +  E       +  P+ +++D  +  +   
Sbjct: 5   SILIIEDEKNIQTFMRKILIRHDYRVLCADTGTEGLSLIRSQC-PDLVLLDLGLPDMNG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +   + + +  +       + +     GA+ ++ KPF    L   +R   +   
Sbjct: 63  NQIIRDVRTWSSIPIIVISARSAEREKVQALDLGADDYITKPFGTSELLARIRTSLRHSN 122

Query: 123 SKDENQFL 130
               +Q L
Sbjct: 123 RMHTDQEL 130


>gi|220928356|ref|YP_002505265.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998684|gb|ACL75285.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 231

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R++    F   G+ V  A+   E  E  ++      +++D  M  +  
Sbjct: 4   KNMLVVDDDEDIREMIGTYFTREGYKVCFASDGKEGLELAKQNNY-AIILLDVMMPQMDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +   +  + L +D  V  L  + +    + G   G + +L+KPF+   L   ++ + + 
Sbjct: 63  YT-MLANLRLFSDTPVILLTAKGEQMSKVKGFTKGCDDYLVKPFDFAELSLRIQAILKR 120


>gi|110803699|ref|YP_697777.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684200|gb|ABG87570.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 234

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE   +  V+D  M  +   
Sbjct: 5   NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRERY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
 gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LL++   +VR+         G  V  A +  +          P  +V+D  + G+ 
Sbjct: 1   MAAILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAP-PELVVLDLMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R +     V V  L    D   ++ G  AGA+ +++KP     L   +R + + 
Sbjct: 60  GFEVC-RGIRAAGPVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRR 118


>gi|77458313|ref|YP_347818.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382316|gb|ABA73829.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++  +     G          + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLEANTV-DLIVLDIMMPGDDGLL 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         +  L    D    I G   GA+ +L KPF    L   +  + +  
Sbjct: 66  LCRELRS-GKHKATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 228

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       +  ++V  A    E   F       + +++D  +  +   
Sbjct: 2   RILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEG-HFLGDTEPYDAVILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118


>gi|119488980|ref|ZP_01621915.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Lyngbya sp. PCC 8106]
 gi|119454936|gb|EAW36079.1| Putative diguanylate phosphodiesterase (EAL domain) with Response
           Regulator Receiver modulation [Lyngbya sp. PCC 8106]
          Length = 234

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 3/124 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +R     L     +    A    +  E   KE+ P+ ++ D  M G  
Sbjct: 1   MKKILVIEDDEPIRMSILELLMIEQYQGIGAEDGYQGLELA-KEVQPDLIICDIMMPGFD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  ++Q     ++   +L  + +      G   GA+ ++ KPF    L  A++   
Sbjct: 60  GYAVLNELQQESGTANIPFIFLTAKTERHDQRMGMELGADDYITKPFTTTELLEAVKTRL 119

Query: 119 QMQK 122
           + Q+
Sbjct: 120 KKQQ 123


>gi|303257821|ref|ZP_07343831.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|330998757|ref|ZP_08322485.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302859424|gb|EFL82505.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|329576254|gb|EGG57770.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 237

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R++        GF V  A S   A E+  K    + +++D  M  +  
Sbjct: 5   TTILIVDDESKIRRLLSRSLEAEGFDVAVADSAMSASEYL-KNGHCDLIILDYMMPEIDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F+A +R+      + V  L    +  K       GA+ +++KPF+ E +   +R + +
Sbjct: 64  MAFLAELRKKSS---IPVIMLSAREEIAKKTQALELGADDYVVKPFSIEEMTARIRAILR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 237

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           LL +    +R          G+ V       EA     +   P+ LV+D  M G+     
Sbjct: 2   LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTP-PDILVLDVMMPGIDGLQV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R    G    +  L   V+    IAG  AGA+ +++KPF+ E +   +R L + 
Sbjct: 61  CRVLRA--EGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116


>gi|291446359|ref|ZP_06585749.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349306|gb|EFE76210.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 247

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L+V+    +R+  +     +G+ V  A       E        + L++D  +     +
Sbjct: 17  SVLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAH-DLLILDVMLPALDGI 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+      V V  +    D   ++AG  AGA+ +++KP +   +   +R L + 
Sbjct: 76  GLCHRIREESP---VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 132


>gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 228

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           LLL++    +R       +  G  V  A +  +  E   +E  P+ +V+D  + G+  F 
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELL-REQRPDLVVLDVMLPGIDGFE 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + +  
Sbjct: 66  VCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRG 122

Query: 122 KSKDEN 127
           + +  +
Sbjct: 123 ERESTD 128


>gi|239834699|ref|ZP_04683027.1| Regulatory protein virG [Ochrobactrum intermedium LMG 3301]
 gi|239822762|gb|EEQ94331.1| Regulatory protein virG [Ochrobactrum intermedium LMG 3301]
          Length = 248

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A    + R F E   + + +V+D  M G     
Sbjct: 9   ILIVDDDREIRELVSSYLKKNGLRTSVAADGRQMRTFLEANAV-DLIVLDVMMPGDDGLV 67

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       V V  L    D    I G   GA+ +++KPF    L   ++ + +  
Sbjct: 68  LCRELRS-GKHRSVPVLLLTARSDEMDRIIGLEMGADDYIVKPFAARELLARIKAVLRRT 126

Query: 122 KSKDEN 127
           +    N
Sbjct: 127 RMLPPN 132


>gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 230

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +   +    GF V  AT+  EA      E  P  +V+D  +     F
Sbjct: 6   RVLVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRA-GESHPRLVVLDVLLPDGDGF 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R    G ++ + +L         IAG   G + ++ KPF+ E L   +R + + 
Sbjct: 65  EVCRTLRA--AGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRR 122


>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 242

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 14  NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQIAILDIMMPQMDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 73  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 129

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 130 RYTYFNQN 137


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +V +      G+    A +  EA E  E     + +++D  +  +   
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFE-NGNWDLILLDVMLPNISGL 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R       + +  L         ++G   GA+ ++ KPF  E L   +R   ++  
Sbjct: 63  EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122

Query: 123 SKDENQ 128
              E +
Sbjct: 123 VVKEEE 128


>gi|109898565|ref|YP_661820.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Pseudoalteromonas atlantica T6c]
 gi|109700846|gb|ABG40766.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Pseudoalteromonas atlantica T6c]
          Length = 331

 Score =  131 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD      +V + +  D  + +  A S  EA    E++ LP+ +++D  M G+  
Sbjct: 9   QKVLIVDDEPANLRVLKRILGDL-YRLSFAKSGEEALRLVERD-LPDLILLDVMMPGMTG 66

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++       + V ++    D      G   GA  ++ KP +   ++  +R    
Sbjct: 67  FEVCKSLKDSRQTRAIPVMFVTALNDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHLS 126

Query: 120 MQKSKDENQF 129
           + ++ DE + 
Sbjct: 127 LVQA-DELRR 135


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L V+   ++R+  +      GF V       +  E       P+  ++D  + G+   
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAG-APDIALLDVMVPGMDGV 96

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + + 
Sbjct: 97  SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153


>gi|298244853|ref|ZP_06968659.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Ktedonobacter racemifer DSM 44963]
 gi|297552334|gb|EFH86199.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Ktedonobacter racemifer DSM 44963]
          Length = 465

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 1/128 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +           G+ V+ A+         +K    + +++D  +  +    
Sbjct: 5   ILIVDDEPHLPHQLARYLRKRGYDVYTASDGEAGLRELQKNT-IDLVLLDLRLPKLSGLE 63

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R      ++ V  L    D +  +   + GA+ ++LK F+ E L   ++        
Sbjct: 64  VLRRIREHEAELPVVILTAYGDVQTAVEAMKLGASDYILKGFDLEELLLVVKRALDTSAM 123

Query: 124 KDENQFLD 131
             E + L 
Sbjct: 124 SRELRQLK 131


>gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
 gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
          Length = 1227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L  D +  +R+    L +   + V       EA      E   + ++ D  M      
Sbjct: 625 RILFADDNSDLREHVVRLLSPA-YEVVAVPDGVEALRLAV-ETPFDLVLTDVMMPRLDGF 682

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +A +R  P    V +  L       + +AG   GA+ +L KPF+ + L   +R   ++
Sbjct: 683 GLVAALRAEPATRHVPIVLLSARAGAAEEVAGLSTGADDYLTKPFSSQELVARVRANVEL 742

Query: 121 QKSKDE-NQFLDAI 133
            + + +  + L A+
Sbjct: 743 GQLRGQIIRRLRAL 756


>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ VF+A+   EA E  E+E + N +V+D  M  +  
Sbjct: 3   NNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEV-NLMVLDIMMPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R     + + +  L  +V+    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  LEVCKRARQKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119


>gi|169343028|ref|ZP_02864056.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298937|gb|EDS81011.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 234

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE   +  V+D  M  +   
Sbjct: 5   NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +R+         GF V  A+    A   CE    P+ LV+D  + G   
Sbjct: 4   RRVLVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASS-PDVLVLDVMLPGYDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R       V V  L    D   M+ G   GA+ +L KPF+   L   +  L +  
Sbjct: 63  LEVCRRVQASRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRA 121

Query: 122 KSKDE 126
               E
Sbjct: 122 DRAQE 126


>gi|330502123|ref|YP_004378992.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328916409|gb|AEB57240.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 244

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L+ +    +  +        G     A+   +A     + L P+ L++D  M  +    
Sbjct: 18  VLIAEDEAEIADILIAYLQRSGLRTQHASDGQQALAM-HQSLKPDLLLLDVQMPVLDGWK 76

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            ++ +R      D  V  L         + G R GA+ +++KPFN   +   ++ + +  
Sbjct: 77  VLSEIRSRG---DTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRRT 133

Query: 122 KSKD 125
           ++  
Sbjct: 134 RASA 137


>gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ D    +            + V +A +  +A +    E   + +++D  M  +   
Sbjct: 5   NVLVCDDDRAIVDALEVYLRQENYEVIKAYTGKQALKAL-AEQKIHLILLDVMMPEMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A V+      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  SATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRR 120


>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+++    + +         G+MV +        E        + +++D  +     +
Sbjct: 5   KILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERA-TGGKFDLIILDVMLPSLNGM 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +RQ+       V  L  + +    + G   GA+ ++ KPF  E L   +R + + 
Sbjct: 64  EVLRRLRQVSE---TPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKR 120

Query: 121 QKSKDENQ 128
           +K  +  +
Sbjct: 121 RKPANHKR 128


>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +   ++     H     G+ V        A      E   + +++D  +  V  F
Sbjct: 2   RILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDGF 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                       V V  L         + G   GA+ +++KPF+   L   +R L + 
Sbjct: 62  SVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRR 119


>gi|237723330|ref|ZP_04553811.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229447852|gb|EEO53643.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 960

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L++D +  +R     L +   + V EA    E      K  +P+ ++ D  M G+    
Sbjct: 715 VLIIDDNADIRLYVHGLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGMDGIE 772

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + V  L      E+ I G   GA+S++ KPF+ + L   +R L    
Sbjct: 773 CCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDSH 832

Query: 122 KSKDE 126
           +   +
Sbjct: 833 RRLKQ 837


>gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1]
 gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1]
          Length = 251

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +R++              A    EA      E  P+ +++D +M    
Sbjct: 20  MPQVLVVDDDPHIRELLVFALEKARLSARVAEDG-EAALAAVAEQAPDLVILDINMPRLD 78

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R      D+ + +L    D    + G   G + +++KPF+   +   ++ + 
Sbjct: 79  GLEVCRRLRAQG---DLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAIL 135

Query: 119 QMQKSKDENQ 128
           +  + + E +
Sbjct: 136 RRVRGRAEPR 145


>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         R    + G++V             E E   + LV+D  + G   +
Sbjct: 2   RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDY-DLLVLDVMLPGQDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V +L    D    + G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 61  T-LLQNLRRSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQ 119

Query: 123 SKDENQFLDA 132
            ++ N    A
Sbjct: 120 PRESNTLRVA 129


>gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58]
          Length = 221

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +    R      G+ V  AT   +   F       + +V+D  +  +   
Sbjct: 2   RLLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDG-HFLGSTESYDAVVLDLGLPTIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L     +   +AG  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRR 118


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+      +     E    +   + +++D  +  +  
Sbjct: 4   KKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDY-DLILLDLMLPELDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D  +  +         +AG   GA+ ++ KPF  E L   +R   + +
Sbjct: 63  FEVA-RRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121

Query: 122 K 122
           +
Sbjct: 122 E 122


>gi|1705849|sp|Q07783|CHVI_RHIRD RecName: Full=Transcriptional regulatory protein ChvI
 gi|304125|gb|AAA03553.1| putative [Agrobacterium tumefaciens]
          Length = 241

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V   T    A +       P   + D  M  + 
Sbjct: 1   MQTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARP-PQLAIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + +    + G + GA+ F+ KPF++  L   ++ + + 
Sbjct: 60  GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118

Query: 121 QKSKD 125
             S++
Sbjct: 119 ASSRE 123


>gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 229

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    +  + R   N  G+ V       +A E   ++  P+ +++D  +     
Sbjct: 3   QHILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVE-WIRDNTPDLILLDLMLPVKDG 61

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 VRQ    ++V +  +  +VD    + G   GA+ ++ KPF+   +   +R + +
Sbjct: 62  HTICQEVRQ---FSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLR 118

Query: 120 MQK 122
            Q+
Sbjct: 119 RQE 121


>gi|332706274|ref|ZP_08426342.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
 gi|332354979|gb|EGJ34451.1| two component transcriptional regulator, LuxR family [Lyngbya
           majuscula 3L]
          Length = 215

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LLL+D    +  + +      G+ V  A    EA +  E + +P+ ++ D  M  +  
Sbjct: 10  QKLLLIDDDPNLILLVKDYLEFRGYEVMTAEHGKEALDILE-QDIPDMIICDVMMPEMDG 68

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  VR     + + V +L  +   +  I G   GA+ +++KPF  E L   +    +
Sbjct: 69  YTLVEKVRDDSRTSCIPVLFLSAKGQSQDRIKGLNKGADIYMVKPFEPEELVAQVESCLK 128

Query: 120 M 120
            
Sbjct: 129 Q 129


>gi|329939932|ref|ZP_08289214.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
 gi|329300758|gb|EGG44654.1| sensory histidine kinase [Streptomyces griseoaurantiacus M045]
          Length = 646

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 526 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVAVVLMDIMMPEMDGY 585

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R+MP    + +  L  +           +GA+ ++ KP + + L   M +  +
Sbjct: 586 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIESGASDYVTKPVDPDHLLSVMNQWMR 644


>gi|317485002|ref|ZP_07943885.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923740|gb|EFV44943.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 247

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +R V   L  DFG+ V  A S  EA E       P  +V D  M G+   
Sbjct: 6   RVLLVDDEPGIRHVLGALIRDFGYDVHTAESAREALEAFTANPFP-IVVTDIRMPGMDGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      D  V  +    D +  +   R GA  F+ KP N + L  +++   +   
Sbjct: 65  ALLERVRNQNPDTQVVMITGHGDMDNAVECLRLGAADFIAKPVNDDLLEHSLKRAAEQYS 124

Query: 123 SKDENQF 129
            +++ + 
Sbjct: 125 LREQIRR 131


>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+    +  + +    + G +V  A      ++   +    + L+ D  +    
Sbjct: 1   MK-ILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDY-DLLISDIILPLLS 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R      ++ V  L      +  + G  AGA+ +L+KPF+   L   +R + 
Sbjct: 59  GIELCREIRM--AKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVM 116

Query: 119 QMQK 122
             + 
Sbjct: 117 NRKN 120


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+VD    + ++   +    G       S  +     E    P+ +++D  + G+     
Sbjct: 2   LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFES-FRPDLVLLDLMLPGMDGMSV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     + V +  L  + D   ++AG  AGA+ +L KPF    L   ++   +   
Sbjct: 61  CRQIRA---TSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTD 117

Query: 123 SKDE 126
              E
Sbjct: 118 QLGE 121


>gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 7   RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIEGW 65

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 66  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 122

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 123 QQYLQENEL 131


>gi|168208958|ref|ZP_02634583.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170712748|gb|EDT24930.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 234

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE   +  V+D  M  +   
Sbjct: 5   NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPELDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 123 SKDENQFL 130
               ++ +
Sbjct: 121 GHSSSEII 128


>gi|156740851|ref|YP_001430980.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus castenholzii DSM 13941]
 gi|156232179|gb|ABU56962.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus castenholzii DSM 13941]
          Length = 508

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+V+   +V      L +  GF V  A +  EA +  +     + ++ D  M  +   
Sbjct: 13  RVLIVEDDPMVSSFCARLLHMKGFAVKTACNGREALDILQTHP-FDLVLTDLQMPEMGGM 71

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     D            +      + GA  +L KPF+ + L   +R   + 
Sbjct: 72  ALLRELREHYADLDA--IMFTAYATVDTAREALKLGAFDYLTKPFSVDELERTVRRAVEW 129

Query: 121 QKSKDENQFLDAI 133
           ++ + E Q L  +
Sbjct: 130 RRVRQERQRLSEV 142


>gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+  + +  +  +     G  V  A +  +A E        + +++D  +     
Sbjct: 13  KVILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIE-LHASQPIDLILLDIKLPELNG 71

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E +  +RQ        V  L         +   R GA+ F++KPFN   +   ++ + +
Sbjct: 72  WEVLNKIRQKA---QTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLR 128

Query: 120 MQK 122
             +
Sbjct: 129 RTQ 131


>gi|82775964|ref|YP_402311.1| DNA-binding transcriptional activator KdpE [Shigella dysenteriae
           Sd197]
 gi|309786352|ref|ZP_07680978.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           dysenteriae 1617]
 gi|81240112|gb|ABB60822.1| regulator of kdp operon [Shigella dysenteriae Sd197]
 gi|308925746|gb|EFP71227.1| KDP operon transcriptional regulatory protein kdpE [Shigella
           dysenteriae 1617]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  VFEA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  MR   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARMRVALRR 118

Query: 121 QKSKD 125
             +  
Sbjct: 119 HSATA 123


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+  L+VD    +            F  +  T+  EA  F +     +  ++D  M G+ 
Sbjct: 1   MNRCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLD-NHQVDIAIVDIMMHGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     D+ V  L              +G + +L KPF  + L F ++ + 
Sbjct: 60  GFELCHMIKED---YDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVL 116

Query: 119 QMQKSKDENQF 129
           +      + + 
Sbjct: 117 RRYHIHTDEKL 127


>gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 234

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|326801872|ref|YP_004319691.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
 gi|326552636|gb|ADZ81021.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingobacterium sp. 21]
          Length = 528

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
           +L  D    +R+    L     + V    +   A E   K   P+ ++ D  M G+    
Sbjct: 43  VLFADDDANMREYVSCLLKTQ-YRVTVVQNGIMALELA-KTTQPDLILSDIIMPGMDGIQ 100

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +RQ P   D+ +  L +       I    AGA+ +L+KPF    L   ++    ++
Sbjct: 101 LLQALRQDPRTQDIPLILLSIRASQASKIDSFDAGADDYLVKPFTPPELLARIKAHITLK 160

Query: 122 KSKDE 126
           +++++
Sbjct: 161 RTRNQ 165


>gi|325663729|ref|ZP_08152133.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470222|gb|EGC73455.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         G+ V +A    EA +  +   + + L+ID  M  + 
Sbjct: 1   MFNVLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEV-DLLIIDVMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + + +  L  + +    I G   GA+ +L KPFN   L   ++   + 
Sbjct: 60  GIRATLKIREKNS-LPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRR 118


>gi|315182011|gb|ADT88924.1| response regulator receiver protein [Vibrio furnissii NCTC 11218]
          Length = 315

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD      ++   L     + V  ATS  +A   C +E  P+ +++D  M  +  +
Sbjct: 17  TVLVVDDQPTNIQLIYQLLKKE-YDVLMATSGQQALAVC-REHKPDLILMDVLMPDMNGW 74

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P    + V ++    D +   A   AGA  FL KP N  TL+  +R    +
Sbjct: 75  DTCQTLKRDPDIATIPVIFVTALTDQDDENACWDAGAVDFLQKPINANTLKHRVRAHLTL 134

Query: 121 QKSKDENQFLD 131
           +   D  + L 
Sbjct: 135 KHQSDLLRSLA 145


>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++ +      GF+   A    E           + +V+D  +  +  +
Sbjct: 2   KILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMAL-NGPFDVIVLDILLPKLTGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G+ + V  L      E  + G   GA+ +L KPF+   L   ++ L +  +
Sbjct: 61  QVLEKIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRAQ 120


>gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 6/118 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    + +  +    D GF++  A    EA     KEL P+ +++D  + G    E
Sbjct: 11  ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLA-KELNPSIIILDIMLPGINGYE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             + +++     +  +  L  + D +  + G   GA+ +++KPF+ + L   +    +
Sbjct: 70  VCSEIKK---WVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR 124


>gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 236

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +RK  R      G+   EA +  +          P+ +++D  +  +   
Sbjct: 6   RIVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGK-PDLVILDLGLPDMRG- 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +R +   + V V  L ++   E+ I    AGA+ ++ KPF    L   +R   +
Sbjct: 64  ADVLRAIREWSSVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALR 120


>gi|291288614|ref|YP_003505430.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885774|gb|ADD69474.1| response regulator receiver protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 121

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD +  +R++        G+ V +A    +A +  + E   N +V D +M  + 
Sbjct: 1   MKKILIVDDAITMRQLVAATLKASGYDVVDARDGVDALKKLDAEGRFNLIVSDVNMPNMD 60

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F+  V+         V  L  E        G +AGA ++++KPF    L   ++++ 
Sbjct: 61  GITFLKEVKASSKHKFTPVIMLTTESQAGIKEEGRKAGAKAWIVKPFKPNDLLAVVKKII 120


>gi|110799947|ref|YP_694916.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168216455|ref|ZP_02642080.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624595|ref|ZP_02952377.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674594|gb|ABG83581.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|177910199|gb|EDT72587.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381505|gb|EDT78984.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 234

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    + +       + G+ VF+ ++  E  E  EKE   +  V+D  M  +   
Sbjct: 5   NVLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEE-IHLAVVDIMMPKMDGA 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      D  +  L  + +    I G   GA+ ++ KPFN   L   +    + 
Sbjct: 64  TMVMKIRESY-DFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRR 120


>gi|15604292|ref|NP_220808.1| PETR protein (ompR) [Rickettsia prowazekii str. Madrid E]
 gi|3860984|emb|CAA14884.1| PETR PROTEIN (ompR) [Rickettsia prowazekii]
 gi|292572041|gb|ADE29956.1| PetR [Rickettsia prowazekii Rp22]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+VD    +  + +   N   F+V  A SV EA+   +     + +++D  +     L+
Sbjct: 8   ILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNY-DLIILDVMLPRITGLD 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F   +R    G ++ +  L    +    + G  AGA+ ++ KPF    L   +  L    
Sbjct: 67  FATTIR--DAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNY 124

Query: 122 KSKDE 126
             K E
Sbjct: 125 NFKKE 129


>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++ +  R      GF V        A      E   + +++D  +     +
Sbjct: 15  RILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETY-DLMLLDLGLPKRDGV 73

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R    G  + V  +         + G  AGA+ +L+KPF+ + L   MR L + 
Sbjct: 74  DVLRTLRSR--GHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRR 131

Query: 121 QKSKDE 126
           Q  + E
Sbjct: 132 QSGRSE 137


>gi|310821327|ref|YP_003953685.1| sigma-54 dependent DNA-binding response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|309394399|gb|ADO71858.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella
           aurantiaca DW4/3-1]
          Length = 478

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L++D    +RKV   +    G+ V  A +  +      K    + +V D  M   G
Sbjct: 1   MTKVLVLDDEANLRKVLAAMLRREGYDVTVAENGEQGLAEFHKNGA-DIVVTDLVMPKVG 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  V       DV V  +      +  +   +AGA  ++ KPF +  L   + +  
Sbjct: 60  GMEVLRSV--NAANPDVPVIIITAHGTVDSAVEAIKAGAFDYITKPFEQSELSAVIAKAS 117

Query: 119 QMQKSKDE 126
           +  +S   
Sbjct: 118 KAHESARR 125


>gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 1   MDS-LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +LLV+    + ++ R      GF V    S   A E    E  P   V+D  +  +
Sbjct: 1   MSRPILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSEN-PVLAVLDLMLPDL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               A  R++   TD+ V  L  +   E+ +AG   GA+ +++KPF+   L   ++ + +
Sbjct: 60  SG-EAVCRELTASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVLK 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R +   +    G+    A    +A E  EKE   + ++ D  M  + 
Sbjct: 1   MFNVLVVEDDKDLRGLFCTILTKNGYKAISAEDGEKALEILEKE-YVDLVISDIMMPNMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           ++ +  +  +  F     G   G + +++KP +   +   +  L + 
Sbjct: 60  GFELTKALREANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRR 119

Query: 121 QKSKDENQF 129
            +  +E + 
Sbjct: 120 AQIINERKQ 128


>gi|229593072|ref|YP_002875191.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
 gi|229364938|emb|CAY53042.1| putative GGDEF/EAL domain regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 701

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD         R L     + V  A S  EA E   K  + + +++D  M G+  F 
Sbjct: 14  LLVVDDYPENLVSMRALLQREDWQVVTAGSGVEALELLLKHDV-DLVLLDVKMPGMDGFE 72

Query: 64  --AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R         + +L         ++ G  +GA  +L KPF+   L+  ++ L + 
Sbjct: 73  VARLMRGNQRTRMTPIIFLSANAQSPAAVLEGYASGAIDYLFKPFDPHILKPKVQALLEH 132

Query: 121 QKSKDENQFLD 131
           Q+++   Q L 
Sbjct: 133 QRNRRALQRLS 143


>gi|255656291|ref|ZP_05401700.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450268|ref|ZP_06892029.1| response regulator VanR [Clostridium difficile NAP08]
 gi|296878683|ref|ZP_06902688.1| response regulator VanR [Clostridium difficile NAP07]
 gi|296261031|gb|EFH07865.1| response regulator VanR [Clostridium difficile NAP08]
 gi|296430490|gb|EFH16332.1| response regulator VanR [Clostridium difficile NAP07]
          Length = 238

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +            F V +A    EA +    E     +++D  M  +  
Sbjct: 3   QNILVVDDDREIVDAIEFYLKPDNFNVLKAYDGLEALDILI-ENDIKLIIMDVMMPNLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      ++ +  L  + +    + G   GA+ ++ KPFN   L   ++   + 
Sbjct: 62  LKTTLKIREK-RNIPIILLSAKSEDMDKVIGLNMGADDYITKPFNPLELTARVKSQLRR 119


>gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ VF+A    EA +  EKE + + +V+D  M  +  
Sbjct: 3   NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEV-HLMVLDVMMPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           F    +      ++ +  L  + +    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  FEVCSKVRERY-NIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119


>gi|167552883|ref|ZP_02346634.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322559|gb|EDZ10398.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HAA 121


>gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
 gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
          Length = 235

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R + R   ++ GF    A     A +        + +V+D  M G    
Sbjct: 7   RVIVVDDDPELRTLLRRFLSEHGFETR-AVDGGTALDRELSRSPADAIVLDLMMSGEDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G    +  L    D    I G   GA+ +L KPF    L   +  + +  +
Sbjct: 66  AICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRRTR 125


>gi|16764072|ref|NP_459687.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167992974|ref|ZP_02574069.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168240550|ref|ZP_02665482.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168820174|ref|ZP_02832174.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194447594|ref|YP_002044734.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197263948|ref|ZP_03164022.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|238911647|ref|ZP_04655484.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16419210|gb|AAL19646.1| response regulator in two-component regulatory system with KdpD
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194405898|gb|ACF66117.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197242203|gb|EDY24823.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205328901|gb|EDZ15665.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205340109|gb|EDZ26873.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205343178|gb|EDZ29942.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|261245967|emb|CBG23769.1| KDP operon transcriptional regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992440|gb|ACY87325.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157295|emb|CBW16783.1| KDP operon transcriptional regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911728|dbj|BAJ35702.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320084970|emb|CBY94759.1| Transcriptional regulatory protein yycF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226279|gb|EFX51330.1| DNA-binding response regulator KdpE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129013|gb|ADX16443.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987639|gb|AEF06622.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HAA 121


>gi|23014626|ref|ZP_00054433.1| COG2208: Serine phosphatase RsbU, regulator of sigma subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 572

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 3/130 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV- 59
             +L+V+   + R +     +  G+    A       E    +    + +++D  M  + 
Sbjct: 12  TRILIVEDERLNRLLLETALDHGGYAWVSAEDGQAGWEILVADPAGFDLILLDWRMPRMS 71

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  ++      D+ V       + E ++ G +AG + +L KP N + L   + +  
Sbjct: 72  GMELLVKIKADERLRDLPVVMQTAYAEPEDVVKGIKAGVSYYLAKPLNLQVLMSVVAQAV 131

Query: 119 QMQKSKDENQ 128
           +  ++    Q
Sbjct: 132 REYEALRRLQ 141


>gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2]
          Length = 297

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 1   MDSL----LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M+++    L+VD S     +     N  GF    A +  +A    EK + P+ +++D  M
Sbjct: 1   MNNISDVVLVVDDSPESLGMLNVALNTQGFTALVALNGIQALAIVEK-VKPDVVLLDAVM 59

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
             +  F    R   +  +  + ++    + + ++ G  AG   ++ KP + + +   ++ 
Sbjct: 60  PEMDGFETCKRLKKILPNTPIIFMTGLTEIDDVVKGFDAGGIDYVTKPISPDEVIARIKT 119

Query: 117 LPQMQKS 123
             Q  K 
Sbjct: 120 HIQTAKL 126


>gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+    + ++ +      G+ V  AT+  E  E        + +++D  M  +  
Sbjct: 3   QQILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSY-DLILVDWMMPEMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I H+R     +DV +  +  + +    + G +  A+ +L KPF+ E L+  +R   +
Sbjct: 62  LSMIEHIRLQ---SDVPIIMISAKSNESDKVTGLQD-ADDYLAKPFSLEELKARVRSQIR 117

Query: 120 M 120
            
Sbjct: 118 R 118


>gi|332655191|ref|ZP_08420932.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
 gi|332516051|gb|EGJ45660.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 13/135 (9%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKPLILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVLEASSHN-PDIILLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +       R     +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  IDGVEVIHRVRS-WSNLPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRV-- 116

Query: 119 QMQKSKDENQFLDAI 133
                    + L A+
Sbjct: 117 -------TQRRLAAL 124


>gi|298386943|ref|ZP_06996497.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298260093|gb|EFI02963.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1330

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLLV+ +  +            F V  A +  EA E        + ++ D  M  +   
Sbjct: 1061 TLLLVEDNESMLTFILERLQ-ENFTVETAMNGIEALEILRSGH-IDLIISDIMMPVMDGY 1118

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + + +L  + D +  I G + GA +++ KPF+   L+  +  L   
Sbjct: 1119 QLCKEVKSDMELSHIPIIFLTAKNDIDSKINGLKYGAEAYVEKPFSFNYLKEQVLSLLDN 1178

Query: 121  QKSKDE 126
            ++ + E
Sbjct: 1179 RRRERE 1184


>gi|294805989|ref|ZP_06764856.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294446871|gb|EFG15471.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 945

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D +  +R   R L +   + V EA    E      K  +P+ ++ D  M G+   
Sbjct: 699 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 756

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPF+ + L   +R L   
Sbjct: 757 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 816

Query: 121 QKSKDE 126
            +   +
Sbjct: 817 HRRLKQ 822


>gi|251791589|ref|YP_003006310.1| DNA-binding transcriptional regulator CpxR [Dickeya zeae Ech1591]
 gi|247540210|gb|ACT08831.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + R L    GF V  A    +A    +  +    L I    +  +
Sbjct: 1   MNKILLVDDDRELTSLLRELLEMEGFNVVVAHDGEQALSVLDDSVDLLLLDIMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  VRQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKEVRQR---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLDA 132
               D+ Q  +A
Sbjct: 118 SNWTDQQQAGEA 129


>gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein
           [Oxalobacter formigenes HOxBLS]
 gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein
           [Oxalobacter formigenes HOxBLS]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  +R          G          +A      +   + +++D  + G+ 
Sbjct: 1   MAKILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQS-FDLIILDIMLPGMD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G +  V +L      +  I G   GA+ +L+KPF+   L   +  + 
Sbjct: 60  GLDLCRELRAR--GNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAIL 117

Query: 119 QMQK 122
           +  K
Sbjct: 118 RRVK 121


>gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
           BAA-613]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +     R++   +  + G+    A    EA +  +   + + +++D  M G+ 
Sbjct: 1   MFQILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHV-DLVILDIMMPGMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R       + +  +  +   E    G   G + ++ KP + E +   +R L 
Sbjct: 60  GYEFTRQLRATDYT--LPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALL 117

Query: 119 QMQKSKDENQ 128
           +  +  +E +
Sbjct: 118 RRAQIVNERR 127


>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1287

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 3/117 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVLE 61
             +LLV+ + + R +   L    G  +  A + CEA      E  P + +++D  M G+  
Sbjct: 939  RILLVEDNEMNRTLAVELLRRRGAQIDSAVNGCEALARILHEAAPYDIVLMDLQMPGMDG 998

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
                  +R     + + +  +      E+       G N +L KP N   +   +RE
Sbjct: 999  YEATRKIRADLRFSALPIIAVTAHAMVEERDRCREVGMNGYLTKPLNVPEMINLIRE 1055


>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++      +  +      G+ V  +    +   F  +    + L++D  + G+  +
Sbjct: 2   RILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGL-FVAQSSEFDLLILDVMLPGIDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R+    + V V +L      E  + G   GA+ +L+KPF+   L   +R L +   
Sbjct: 61  -SFIRRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTP 119

Query: 123 SKDEN 127
            + ++
Sbjct: 120 MRQQD 124


>gi|116074985|ref|ZP_01472246.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116068207|gb|EAU73960.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 236

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +VD    +R++      D G+ V   + V +     E +  P+ +V+D  M G     
Sbjct: 2   IWVVDDDPDLRQMVGTYLIDQGYDVRCLSDVKQFEARLEFQ-RPDLVVLDLMMPGDDGLT 60

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
           A  R    G D+ V  L    +    I G   GA+ +L KPF    L   +  + + + S
Sbjct: 61  ALRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLGKPFLPRELSARIDAVLRRRSS 120


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD S + R+V      D G  V  A +  +A +    +   + +++D  M  +  
Sbjct: 879 KKVLIVDDSILNREVASEFLLDVGIQVSTANNGQQALDMI-NQYHYDLVLMDVQMPVMDG 937

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 +R+ PL   + +  +      +       AG N  L KP + + L   +    
Sbjct: 938 LTATKQLRKNPLHKQLPIIAMTAHASADDYRRSLDAGMNDHLNKPIDHQLLYLTVTRWI 996



 Score = 74.8 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 7/113 (6%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCE----KELLPNYLVIDESMEG 58
             L+VD + + R+V   +    G  V          +  E    K+   + + +D ++ G
Sbjct: 728 RALVVDDNAMAREVLADILTSLGLEVTTVADGYAGIDELEKACSKQTPYDVVFLDWNIPG 787

Query: 59  VLEFI---AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRE 108
           +          R + +     +  +      +             + KP +  
Sbjct: 788 INGVETASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDAS 840


>gi|226945001|ref|YP_002800074.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719928|gb|ACO79099.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 310

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++L+VD   +       +       V  A+    A      E LP+ +++D  M G   
Sbjct: 15  QTVLIVDDLPVNLAFVAGVLEAE-CEVIAASDGTSALRLA-AEALPDLILLDVRMPGIGG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++   L   + V +L    D +    G   GA  +++KPFN   LR  +R   +
Sbjct: 73  FEVCRRLKASALTAPIPVIFLTSLSDPDDEAEGLEIGAIDYIVKPFNAPVLRARVRNHLR 132

Query: 120 MQKSKDENQFLD 131
           + +  +  + + 
Sbjct: 133 LARQHELLERMA 144


>gi|313675771|ref|YP_004053767.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312942469|gb|ADR21659.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 4/126 (3%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     LLL +    +  + +      GF V        A   C +    + L++D  M 
Sbjct: 1   MKKEYQLLLAEDEPSLGLILKESLESRGFKVDHCEDGEAAW-KCYQAKEYDLLILDVMMP 59

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F    +       + + +L  +     ++ G   G N ++ KPF+ E L   ++ L
Sbjct: 60  KLDGFSLAQKVRKADGYIPIIFLTAKSTTNDVVEGFEKGGNDYIKKPFSMEELIVRVKAL 119

Query: 118 PQMQKS 123
            + + +
Sbjct: 120 LERKSN 125


>gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +R +        G+ V    S     +      +P+ +++D  + G    
Sbjct: 5   RVLLVEDDRDIRSLLVDFLGGEGYDVEAVGSGAL-MDRALMRGMPDLVILDIMLPGEDGL 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L  + D    I G   GA+ +L KPFN   L   +R L + 
Sbjct: 64  SICRRLRTKSR---VPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRR 120


>gi|288925422|ref|ZP_06419356.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288337893|gb|EFC76245.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 948

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+ S +V +          + +F A       E    +L+P+ ++ D  M  +  
Sbjct: 679 TRVLIVEDSAMVAEYIGQQLGGK-YRLFYAADGESGWEKAL-QLVPDIIITDVMMPRLDG 736

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+  L   V V  +  +V  E  + G  AGA+++L KPF+ + L   +  L +
Sbjct: 737 CLLCRRIRRSDLLGHVPVVMVTAKVTHEDKMQGLEAGADAYLEKPFHGDELNRRVERLLE 796

Query: 120 MQKSKDENQFLDAI 133
            Q+   + + L  +
Sbjct: 797 QQQLMRK-KLLAEL 809


>gi|218514071|ref|ZP_03510911.1| two-component response regulator protein [Rhizobium etli 8C-3]
          Length = 138

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +       + G++V +A    E   F       + +++D  +  +   
Sbjct: 2   RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEG-HFLGDTEPYDAIILDIGLPEMDGV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +    G  V V  L     +   +AG  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  TELEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118


>gi|254418366|ref|ZP_05032090.1| Sigma-54 interaction domain family [Brevundimonas sp. BAL3]
 gi|196184543|gb|EDX79519.1| Sigma-54 interaction domain family [Brevundimonas sp. BAL3]
          Length = 482

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD     R++ + +    G+ V  A    EA +   +    + L++D  M  +  
Sbjct: 3   KTVLVVDDDPTQRRLLQAVLERDGYAVVHAAGGGEAIDRMLRGGGADMLLLDMVMPEMSG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G    V  L      + ++   +AGA  F +KP   E L   +R   +M 
Sbjct: 63  LECLAELRSAGVTTPVIVLTANGGIDTVVKAMQAGAQDFFVKPVGPERLLVGVRNALKMT 122

Query: 122 KSKDENQFL 130
           +   E   L
Sbjct: 123 QLTAEVGRL 131


>gi|197295084|ref|YP_002153625.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944563|emb|CAR57167.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 277

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD      ++   +       +  A    +A    +  + P+ +++D  M  +  F 
Sbjct: 22  ILIVDDRPNDLRLLTEILRAAQCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +   P    + V  L    D E  IAG   GA  +++KPF    +   +R   +  
Sbjct: 81  ASRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGALDYIVKPFEPAEVIARIRNHLKRG 140

Query: 122 KSKD 125
           +   
Sbjct: 141 RRSQ 144


>gi|78060490|ref|YP_367065.1| two component AraC family transcriptional regulator [Burkholderia
           sp. 383]
 gi|77965040|gb|ABB06421.1| two component transcriptional regulator, AraC family [Burkholderia
           sp. 383]
          Length = 278

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD      ++   +       +  A    +A    +  + P+ +++D  M  +  F 
Sbjct: 22  ILVVDDRPNDLRLLTEILRAARCRISVAFDGLQAYHRAQA-IAPDLILMDVRMPRMDGFA 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +   P    + V  L    D E  IAG   GA  +++KPF    +   +R   +  
Sbjct: 81  ACRLLASTPSTQSIPVIILTAAGDLEDRIAGLETGAIDYIIKPFEPTEVLARIRNHLKRA 140

Query: 122 KSKD 125
           +   
Sbjct: 141 RRSQ 144


>gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
 gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
          Length = 244

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+++    +      +     + V  A +  EA      +  P+ +++D  +  +   
Sbjct: 6   TVLIIEDEKNILTFVSKVLKKHEYKVLCADTGKEALSLIGSQC-PDIILLDLGLPDIDG- 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +R++   +   +  +      ++ +A    GA+ ++ KPF    L   +R   +
Sbjct: 64  SSIIREVRAWSSTPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSLR 120


>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
 gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LLV+  H + ++  H     GF +  A    E     ++    + +++D  +    
Sbjct: 1   MQRILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSY-DLVLLDIMLPKLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++F+  +R+    +++ V  +  +        G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GMDFLKIIREK---SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAI 116

Query: 119 QMQKSKDENQF 129
           +        + 
Sbjct: 117 RRATQYSAEEL 127


>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+ V    +  E  E    E   + ++++  +  +  
Sbjct: 3   KKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETAL-EKEFDLILLELMLPEMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++      ++  +        ++AG   GA+ +++KPF  E L   +R + + Q
Sbjct: 62  FEVT-RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQ 120

Query: 122 KSKDENQ 128
             + E +
Sbjct: 121 DIESEKK 127


>gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
 gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKE--LLPNYLVIDESMEGVL 60
            +L+ D    + ++     ++ G+ V +A +  +A  + + +       +++D  M  V 
Sbjct: 2   RILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKVD 61

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      +  V  L  +   +  I G  +GA+ ++ KPFN   +   ++ + + 
Sbjct: 62  GMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILRR 121

Query: 121 QKSKDEN 127
           Q +  + 
Sbjct: 122 QSTYQKE 128


>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L++D    + ++      + G+ VF+A +  +      +E   + +V+D  M G+ 
Sbjct: 1   MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEK-IHVVVLDVMMPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++      ++ +  L  +      I G   GA+ +++KPFN   L   ++   + 
Sbjct: 60  GFQVCMKIRKDY-NIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRR 118


>gi|17231588|ref|NP_488136.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133231|dbj|BAB75795.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 356

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           S+L++D       V   L +   + +  A+   +A         P+ +++D  M     +
Sbjct: 6   SILVIDDEPDNFDVVETLLDGENYQLHYASGGQQAIARL-SSFQPDVILLDVMMPHLDGI 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    V +  +      E +     AGA+ F+ KP N   LR  +  + ++
Sbjct: 65  EVCRRIKADPQWQAVPIIIVTALTAKEDLAHCLNAGADDFISKPLNSVELRARVNSMLRI 124

Query: 121 QKSKDENQFL 130
           ++  D  Q L
Sbjct: 125 KQQHDNLQGL 134


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+    +RK+           V EA    EA    E+E   + +++D  +      
Sbjct: 5   RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQY-DLIIVDIMLPEYDGW 63

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R+    ++V +  L    +    + G   G + ++ KPF+ + L   ++ L + 
Sbjct: 64  TICKRIREK---SNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKR 120

Query: 121 QKSKDENQFL 130
              +   + L
Sbjct: 121 SNRQLSTETL 130


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L V+   ++R+  +      GF V       +  E       P+  ++D  + G+   
Sbjct: 12  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVA-APDIALLDVMVPGMDGV 70

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + + 
Sbjct: 71  SLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEF 62
           L+VD    + ++   +    GF          A     +   P+ +++D  + G    E 
Sbjct: 2   LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIF-RSTSPDLVLLDVMLPGKDGTEV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R       V V  L  + D   ++ G  +GA+ ++ KPF  + L   +R   +   
Sbjct: 61  CRQIRAESG---VPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTD 117

Query: 123 SKDENQF 129
                + 
Sbjct: 118 EPAPERL 124


>gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
 gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
 gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL +    + K    +     + V        A ++ E +   + +V+D  M  V   
Sbjct: 2   RLLLAEDERALSKALTAILERNNYSVDAVYDGQSALDYLEADNY-DGVVLDIMMPKVDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G  + +  L  + + +  + G  AGAN +L KPF+ + L   +R + + Q 
Sbjct: 61  TVLRKVRERGNLIPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAITRAQT 120

Query: 123 SKD 125
           ++ 
Sbjct: 121 AQA 123


>gi|109897915|ref|YP_661170.1| response regulator receiver protein [Pseudoalteromonas atlantica
           T6c]
 gi|109700196|gb|ABG40116.1| response regulator receiver protein [Pseudoalteromonas atlantica
           T6c]
          Length = 548

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +L+VD   + R +  H+    G+   +EA S  EA    ++ + P  +++D  M+ +  
Sbjct: 2   RILIVDDDSLNRFLLLHMLEQKGYVDCYEAESGHEAVSLAKR-INPELVLLDVMMDDMNG 60

Query: 62  FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +     +++      + + ++    D E ++     G + F+ KPFN+  L   +    +
Sbjct: 61  YEVAPILKEQAGDIYLPIIFITALDDEESLVRCLEVGGDDFVAKPFNKTILAAKISAHAR 120

Query: 120 MQKSK----DENQFL 130
            ++      ++NQ L
Sbjct: 121 TRELSKKSYEQNQQL 135


>gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    + +    L     + V  A    EA ++       + ++ D  M    
Sbjct: 1   MK-VLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQY-DVIISDIMMPQLD 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L  ++++R   +     V  L  +   E  + G  AGA+ +L+KPF  + L   +R + 
Sbjct: 59  GLGVLSYLRNHQI--KTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVML 116

Query: 119 QMQKSKD 125
           +    ++
Sbjct: 117 RRNNREN 123


>gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 234

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +RK  R      G+ V EA +  E          P+ LV+D  +  +   
Sbjct: 9   TILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNK-PDLLVLDLGLPDMDG- 66

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R+    + V V  L +     + +     GAN ++ KPF  +     +R L +   
Sbjct: 67  QQVLREFREWSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALLRQAP 126

Query: 123 SKDENQ 128
           + +  +
Sbjct: 127 AGEAQE 132


>gi|302342973|ref|YP_003807502.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM
           2075]
 gi|301639586|gb|ADK84908.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfarculus baarsii DSM 2075]
          Length = 456

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD     R + R    D G+ V +A     A    E E +   +++D+ M  +  
Sbjct: 6   QTVLVVDDERGHRLMLRAHLEDAGYRVIDAADGEAALVQLESEPV-ELVLMDQVMPRMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R      ++ V  +      +  +   + GA+ +L KP + E +   +    +  
Sbjct: 65  LSALKRVKAQRPELPVLMMTAFGSIDNAVTALKEGADDYLTKPLDVEEVLIKVGRRLEQA 124

Query: 122 KSKDENQ 128
           +   + +
Sbjct: 125 RLARQVE 131


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +  R      G+ V  A +  +A  +  +      +V+D  + G+ 
Sbjct: 1   MVRILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPY-AAIVLDIMLPGLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +    R    G    +  L  +   +  I     GA+ FL KPF+   L   +R L + 
Sbjct: 60  GYRVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRR 119


>gi|256830477|ref|YP_003159205.1| Fis family two component sigma5-4 specific transcriptional
           regulator [Desulfomicrobium baculatum DSM 4028]
 gi|256579653|gb|ACU90789.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfomicrobium baculatum DSM 4028]
          Length = 454

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D     R + R +  D GF V EA +          + + + +++D  M G+   
Sbjct: 6   TVLVIDDEPAHRLMVRVVLGDAGFKVLEADNGSSGLTTLRAKPV-DVVLLDMRMPGMSGL 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G    V  L    +    +   + GA  +L KP + + L   +++  +  +
Sbjct: 65  DVLQKMHEEGIATPVIMLTAFGNVSSAVESMKIGAWDYLTKPTDNDELLAVVKKAAEHVR 124

Query: 123 SKDENQFLD 131
              EN+ L 
Sbjct: 125 LTRENRDLK 133


>gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         R    + G++V         +   E E   + LV+D  + G   +
Sbjct: 2   RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V +L    D    + G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 61  T-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119

Query: 123 SKDENQFLDA 132
            +D N    A
Sbjct: 120 PRDSNTLRAA 129


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ V +A +     E  E+    + +++D  +  + 
Sbjct: 1   MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEA-DLIILDVMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   ++V +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 236

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            ++LLV+    + +       +  + V       EA +       P+ +++D  + G   
Sbjct: 8   TTILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTK-PDLVLLDIMLPGKDG 66

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    VR         +  +    D    + G   GAN ++ KP     L   ++ L +
Sbjct: 67  FEVCKEVRASYPN---PILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLK 123

Query: 120 MQKSKDE 126
              + D+
Sbjct: 124 NTAAADK 130


>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQIAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator
           [Dechloromonas aromatica RCB]
 gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dechloromonas aromatica RCB]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         R    + GF+V  A    +       E   +  V+D  + G+  +
Sbjct: 2   KILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAY-DLAVLDVMLPGIDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G D+ V +L    D E  + G   GA+ +L+KPF    L   +R L +   
Sbjct: 61  QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 123 SKDENQFLDA 132
              E+  L+A
Sbjct: 121 KAKESDLLNA 130


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|118579149|ref|YP_900399.1| two component sigma54 specific Fis family transcriptional regulator
           [Pelobacter propionicus DSM 2379]
 gi|118501859|gb|ABK98341.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Pelobacter propionicus DSM 2379]
          Length = 456

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD  + +R     +  D GF+V  A S  EA E    E +P+ +++D  M G+  
Sbjct: 3   KLILVVDDENDIRTSLTGILEDEGFLVSCAASGVEALENVCHE-IPDIVLLDIWMPGLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +   L   + V  +      E  +   + GA  F+ KP + + +   +    +M 
Sbjct: 62  LETLEKLKQLFPHLTVIMISGHGTIETAVRATKLGAFDFIEKPLSLDKVLITVNNALRMG 121

Query: 122 KSKDENQFL 130
           + + EN+ L
Sbjct: 122 ELRVENEEL 130


>gi|332715676|ref|YP_004443142.1| putative two-component response regulator protein [Agrobacterium
           sp. H13-3]
 gi|325062361|gb|ADY66051.1| probable two-component response regulator protein [Agrobacterium
           sp. H13-3]
          Length = 246

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A    +           + +V+D  M G     
Sbjct: 7   ILVVDDDREIRELVSSYLKKNGLRTSVAADGRQ-MRSFLDGNTVDLIVLDVMMPGDDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R         V  L    D    I G   GA+ +L KPF    L   ++ + +  
Sbjct: 66  LCRELRA-GKHKTTPVLMLTARDDEMDRIIGLEMGADDYLSKPFAARELLARIKAILRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|300920765|ref|ZP_07137169.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 115-1]
 gi|300412266|gb|EFJ95576.1| KDP operon transcriptional regulatory protein KdpE [Escherichia
           coli MS 115-1]
          Length = 208

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + V V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HSA 121


>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +       D G+ V  A    E   F  +    + +V+D  +  +   
Sbjct: 2   RLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEG-HFLGETEPYDAIVLDIGLPKMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G  + V  L     +   + G  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  SVLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120

Query: 123 SKDENQF 129
               ++ 
Sbjct: 121 GHAASEL 127


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    ++++ +       + V  A+   E  +   K+   + +++D  M  +  F 
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQS-FDLILLDVMMPNLNGFE 71

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              + +   +++ +  L    + +  + G   G + ++ KPF+   L   +  + +    
Sbjct: 72  VA-KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 124 KDENQFL 130
           +     L
Sbjct: 131 QSTENHL 137


>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
 gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
          Length = 242

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 14  NSILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+   L   ++   +
Sbjct: 73  IELCRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLR 129

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 130 RYTYFNQN 137


>gi|258406488|ref|YP_003199230.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfohalobium retbaense DSM 5692]
 gi|257798715|gb|ACV69652.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Desulfohalobium retbaense DSM 5692]
          Length = 370

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +     +   +     + V  AT    A EF     LP+ +++D  M G+  F
Sbjct: 8   TVLVVDDAEANVDILVDIL-GNDYDVAVATDGPSALEFAFAA-LPDLILLDIMMPGMDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++      D+ + ++    D    I G + G   FL KP     ++  +    ++
Sbjct: 66  EVCRQLKATEATKDIPIVFVTALGDPRSEIHGLKLGGVDFLSKPLTPAIVKARVHNHLEL 125

Query: 121 QKSK----DENQFLD 131
           ++++    D+N+ L+
Sbjct: 126 KQARAALHDQNKRLE 140


>gi|224026196|ref|ZP_03644562.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
 gi|224019432|gb|EEF77430.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 6/133 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++ +      G+ V  A S  EA +        N L++D  M  +  F
Sbjct: 5   RILVVDDEEDLCEILKFNLEMEGYQVDTANSAEEALKL--DLPSYNLLLLDVMMGEISGF 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              + +++      + + ++  +      I G   GA+ ++ KPF+   +   ++ + + 
Sbjct: 63  KMASMMKKNKDTAGIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122

Query: 121 QKS--KDENQFLD 131
             +    E + L 
Sbjct: 123 TANVQTREQEQLQ 135


>gi|189463223|ref|ZP_03012008.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136]
 gi|189430202|gb|EDU99186.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+  + +R++  H      ++V +A     A +  E +   + +++D  +    
Sbjct: 1   MK-ILIVEDDNDLREITTHSLEKERYVVSQAPDYRTALQKIE-DYDYDCILLDIMLPDGN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                     LG    V  L  +   E  + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 59  GLDLLAELHALGKHTNVIILSAKASLEDKVNGLDLGADDYLPKPFHLAELHARIKSLLRR 118

Query: 121 QKSKDENQF 129
           +  + E + 
Sbjct: 119 KLREGERKL 127


>gi|146308781|ref|YP_001189246.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576982|gb|ABP86514.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 802

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 3/111 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+ + I + V R +    G+ V  A +  EA +    E + + +++D  M  +  F
Sbjct: 672 TVLIVEDNAINQLVTRGMLLKLGYRVRTADNGAEALDLLRSETV-DAVLLDCQMPVMDGF 730

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
                +R +P   +V V  +              AG + +L KP   E LR
Sbjct: 731 ATCRALRALPGCAEVPVLAITAHSHSGDRERCLAAGMSDYLAKPMKFEELR 781


>gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 251

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             L+VD    + +V     N   F      +  +A     ++  P+ +++D  + G+   
Sbjct: 19  RALVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAV-AVARDFDPDVVILDLGLPGMDGL 77

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R     +D +V  L         I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 78  EVCRRLR---TFSDAYVVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRR 134

Query: 121 QKSKDENQ 128
            ++  E +
Sbjct: 135 PRATPERE 142


>gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
 gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile]
 gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +           GF +++A    +A E    E   + +++D  M  + 
Sbjct: 1   MYNILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEII-TENDIHLILMDIMMPKLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A V+      ++ +  +  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 60  GIKATVKIREE-RNIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRR 118


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    + +  R      G  V   T      +   +E   + +++D  +  +   +
Sbjct: 12  ILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQ-VSEEQEVDLVILDLMLPDIDGMV 70

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R     + + +  L    + ++ + G + GA+ +++KPF+ + L   +  + + 
Sbjct: 71  VCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRR 127


>gi|215445178|ref|ZP_03431930.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T85]
 gi|289757111|ref|ZP_06516489.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294995216|ref|ZP_06800907.1| transcriptional regulator kdpE [Mycobacterium tuberculosis 210]
 gi|289712675|gb|EFD76687.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|326904745|gb|EGE51678.1| transcriptional regulator kdpE [Mycobacterium tuberculosis W-148]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L++D    + +  R      G+ V  A++   A      E  P+ +++D  +  + 
Sbjct: 1   MTLVLVIDDEPQILRALRINLTVRGYQVITASTGAGAL-RAAAEHPPDVVILDLGLPDMS 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ +  +R         V  L    D    +    AGA+ ++ KPF  +     +R   
Sbjct: 60  SIDVLGGLR---GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAV 116

Query: 119 QMQKSKDENQF 129
           +   +  E + 
Sbjct: 117 RRNTAAAELEQ 127


>gi|163748821|ref|ZP_02156073.1| CheY-like receiver protein [Shewanella benthica KT99]
 gi|161331595|gb|EDQ02400.1| CheY-like receiver protein [Shewanella benthica KT99]
          Length = 120

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L VD S  +R++        GF V EA +  EA +  ++    + ++ D +M  + 
Sbjct: 1   MKQILAVDDSASMRQMVCFTLKTAGFDVTEACNGDEALKAAQQSEY-DLVISDVNMPIMD 59

Query: 61  EFI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++  +P      +  L  E   EK   G  AGA  +++KPFN + L   +R++ 
Sbjct: 60  GLTLIRNLLTLPNYKFTPLLMLTTESGTEKKQEGRSAGATGWIVKPFNPDQLLATVRKVL 119


>gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 498

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +R+    +       V  A +  EA E   +E   + L++D  M G+ 
Sbjct: 7   MK-ILVVDDEKDIREGCVRVLRRLDCEVSMAANGHEALELLGRE-FFDVLLLDLKMPGID 64

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  ++Q     D+ V  +      E  I   + GA  F+ KPF+   LR  +    
Sbjct: 65  GMDVLREIQQQE--RDILVIVITGFATVETAIEAMKQGAYDFIPKPFDPAQLRIVVERAL 122

Query: 119 QMQKSKDENQFLD 131
              +   E + L 
Sbjct: 123 DKIRLIHETEQLA 135


>gi|57864907|gb|AAW57081.1| 2-component response regulator [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+ D    VR   +     + + V  A +  EA         P+ L+ D  M       
Sbjct: 5   ILIADDDPGVRLAVKDYLELYSYSVITAKNGQEALSLLVA-YRPHLLISDIKMPQKDGYT 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            + ++RQ+P    + V +L       + I G   G + +L KPF  E L+  +R L +  
Sbjct: 64  LVRYIRQLPEFRLLPVIFLTERDSTGERIQGYEVGCDVYLPKPFEMEELKAVVRNLLERT 123

Query: 122 KS 123
           + 
Sbjct: 124 QM 125


>gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1917

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +   +   V  A +  E     E     + +++D  M  +  
Sbjct: 1797 KKVLIVDDDVRNIFALTSMLERYQMQVIYAENGREGISLLENTQDIDVVLMDVMMPEMDG 1856

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R+      + +  L  +           AGA+ ++ KP + E L   +R    
Sbjct: 1857 YETMQLIRKKEQFRALPIIALTAKAMQGDRDQCIAAGASDYIAKPVDTEQLLSLLRVWLY 1916

Query: 120  M 120
             
Sbjct: 1917 R 1917



 Score = 97.2 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+++      ++   +    GF V  A +     +   K+  P  +++D  +  +    
Sbjct: 1531 LLIIEDDVNFARILVDMARQHGFQVLSAQTGTAGLKLA-KDFQPMAILLDIRLPEMDGWT 1589

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRELP 118
             +  ++  P    + V+ + +    E    G + GA ++L KP   E +      +R   
Sbjct: 1590 VLDRLKHDPTTRHIPVHIMTV---EEGRQRGLQLGAIAYLQKPVTSEAISEALDKIRGFV 1646

Query: 119  QMQ 121
            + +
Sbjct: 1647 ERR 1649



 Score = 70.6 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +LL+V+   + R+    L  +         +   A E    +   + LV+D  +  +  
Sbjct: 1651 KNLLVVEDDELQRQSIVELIGNSDVATVAVGTGAAALEAIRTQ-QFDCLVLDLGLPDMTG 1709

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E +  +++   G  + +         +      R  A + ++K   + E L  
Sbjct: 1710 FELMEQIKREANGATLPIIVYTGREISKTQETELRRIAETIIVKDVRSPERLLD 1763


>gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 720

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+ + I  +V + +    G+ +  AT   +A + C  E   + +++D  M  +   
Sbjct: 604 KILIVEDNEINAEVVKVMLEGAGYQIVIATDGEKALQACIFEQY-DLILMDMHMPVMDGI 662

Query: 63  IAHVRQMPLGTDV-FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            A  +          +  L      E       AG N F+ KP  ++ L   ++   +
Sbjct: 663 TATQKLRREMNFTNPIIALSANAFVEDREHCIEAGMNDFISKPVEKQALLATIKRHIK 720



 Score = 47.5 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 21/136 (15%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FI 63
           +VD     R+  +H+    G +     +  +           + L++D SM  +     +
Sbjct: 474 IVDDLQTSREYIQHIVTSLGCLPNTFDNAEDFL--ASDISQFDVLLLDLSMPEITGVDVV 531

Query: 64  AHVRQMPLGTDVFVYYLLM---EVDFEKMIAGARAGANSFL----LKPFNRETL---RFA 113
             +R   L     +  +      +D    +          +     KP  R+ L      
Sbjct: 532 ETLRDRQLSKLPHIIIVSAVIEHLDCSTSVR-------DLIWRTHAKPIVRQELESDLKK 584

Query: 114 MRELPQMQKSKDENQF 129
           ++     Q +  E + 
Sbjct: 585 LQNFYSRQHTSIEEEQ 600


>gi|124268769|ref|YP_001022773.1| two component LuxR family transcriptional regulator [Methylibium
           petroleiphilum PM1]
 gi|124261544|gb|ABM96538.1| two component transcriptional regulator, LuxR family [Methylibium
           petroleiphilum PM1]
          Length = 306

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD +     +      D G+ V  A     A +   + ++P+ +++D  M G+  F 
Sbjct: 17  VLVVDDAPSSLGMLCDTLEDAGYTVLIARDGEAALQRL-RLVVPDVILLDAMMPGMSGFE 75

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++  P  T + V ++    +   ++ G   G   +++KP     +   +    +  
Sbjct: 76  TCRVLKADPALTHIPVIFMTGLSETAHVVEGFACGGVDYVVKPIRAPEVLARLHTHARNA 135

Query: 122 KSKDENQ 128
           +     +
Sbjct: 136 RITRLAR 142


>gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 236

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD    +      +    G++V  A           +    + L++D  + G   L
Sbjct: 8   RILLVDDEAELTDPLSRVLIREGYIVDAAYHGING-SQLAQIGTYDLLILDWMLPGKTGL 66

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R+        V +L  +   +  + G  AGA+ +L+KPF    L   +R L + 
Sbjct: 67  EICQELRRQAKT--TPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRR 124


>gi|270263749|ref|ZP_06192018.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042633|gb|EFA15728.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +R+  R      G  VFE+ ++            P+ +++D  +     
Sbjct: 6   TNILIVEDEKEIRRFVRIALESEGLRVFESETLQRGLIEAGT-RKPDLIILDLGLPDGDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             +++R +   + + V  L      E  IA   AGA+ +L KPF    L   +R   +  
Sbjct: 65  L-SYIRDLRQWSAIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRH 123

Query: 122 KSKDENQFL 130
               +   L
Sbjct: 124 SGSQQESPL 132


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    + +         G+ V  A    E       E   + +V+D  + G+   
Sbjct: 2   RLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRA-TEGGYDLIVLDIMLPGMNGY 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A +R    G D  +  L  +        G   GA+ +L KPF+   LR  ++ L + 
Sbjct: 61  RVCAALRA--AGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRR 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|150375913|ref|YP_001312509.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
 gi|150030460|gb|ABR62576.1| response regulator receiver protein [Sinorhizobium medicae WSM419]
          Length = 121

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ + + R +     +  GF V  A +     E    E  P+ +++D S+  + 
Sbjct: 1   MTRILLVEDNEMNRDMLSRRLSRRGFEVLIAENGQAGVELAASEK-PDLILMDMSLPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  PL + + V  L             +AG + +  KP +   L   + +L 
Sbjct: 60  GWEATRRIKADPLTSAIPVIALTAHAMASDREMALKAGCDDYDSKPVDLPQLVRKIEQLL 119


>gi|94263432|ref|ZP_01287245.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|94271768|ref|ZP_01292012.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450346|gb|EAT01573.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456162|gb|EAT06301.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 461

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +R+  + L  + G  V  A     A     +E   + L+ D  M    
Sbjct: 1   MGRILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQED-FDLLISDIRMPPPN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +   RQ+    ++ V  +      +  +   + GA  +L KPF  + ++  +    
Sbjct: 60  GLELLDQARQLQ--PELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTAL 117

Query: 119 QMQKSKDE 126
             ++   E
Sbjct: 118 SSRRQLPE 125


>gi|86606795|ref|YP_475558.1| sensor histindine kinase/response regulator [Synechococcus sp.
           JA-3-3Ab]
 gi|86555337|gb|ABD00295.1| sensor histindine kinase/response regulator [Synechococcus sp.
           JA-3-3Ab]
          Length = 942

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           +LL+V+ S  VR+         GF V +A    EA E  ++ +    ++ D  M      
Sbjct: 810 TLLVVEDSVNVRRFLAMTLERAGFRVEQARDGQEALEHLQRGIPIRAVITDIEMPRLDGF 869

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             +A +R  PL   + V  L      +      R GA+++L KPF  + L   +R+L Q
Sbjct: 870 GLLAQIRAHPLYDQLPVVMLTSRSGEKHRQLAQRLGASAYLSKPFQEQELIQKLRQLLQ 928


>gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
 gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri]
 gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
          Length = 221

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ +    +  V        G+ V  A +  EA E   KE   + +++D  M     L
Sbjct: 2   RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQA-KENAYDVIILDIMMPVKSGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R    G   ++  L    + +  + G  AGA+ +L KPF+ + L   +R   + 
Sbjct: 61  EALKEIRA--TGNRTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRR 118


>gi|150017040|ref|YP_001309294.1| signal transduction histidine kinase, LytS [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903505|gb|ABR34338.1| signal transduction histidine kinase, LytS [Clostridium
           beijerinckii NCIMB 8052]
          Length = 1032

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +LLVD      KV + +F D  +    A +   A E  +K    + +++D  M G    
Sbjct: 704 KILLVDDDVCNIKVLQEIFYDSNYETLVAYNGVNALELVKKHKDISIVLLDVMMPGLSGY 763

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +R+     ++ +  L +    + +  G  AGAN FL KPFN   L+  +  L +M
Sbjct: 764 DVCKRIRKEYKLFELPILLLTVRSTPDDIALGFEAGANDFLTKPFNFMELKARVTTLQKM 823

Query: 121 QKSKDENQFLDAI 133
           + +  E   ++ +
Sbjct: 824 RIAVKEALKMETV 836


>gi|329909927|ref|ZP_08275148.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546366|gb|EGF31380.1| DNA-binding response regulator, LuxR family [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 204

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD       V     ++ G++V  AT    A E     + P+ +++D  M G+  F 
Sbjct: 11  ILIVDDVPDNLAVLSDALDEAGYLVLVATDGAGALERLGY-VTPHLILLDAVMPGMDGFE 69

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +R +P  + + V ++    + E ++ G   G N +++KP     +   +    +
Sbjct: 70  TCRRIRALPGASHIPVIFMTGLTETEHVVRGFEVGGNDYVIKPLQPREVIARIVAQLR 127


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ V    +  EA E  + E   + +++D ++ G+ 
Sbjct: 1   MK-ILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPY-DLILLDLNLPGID 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                       ++  V  L         I G  AGA+ +L+KPF    L   +R L + 
Sbjct: 59  GLELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRR 118

Query: 121 QKSKDE 126
           + ++ E
Sbjct: 119 EYTQGE 124


>gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    + ++ R       F V       E    C KE   + L++D  +  + 
Sbjct: 1   MKKILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLN-CLKENEFDLLILDIMLPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F + +R +    D+ +  +  + +    I G   GA+ ++ KPF+   L   ++   + 
Sbjct: 60  GF-SILRSIQDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKN 118

Query: 121 QK 122
            +
Sbjct: 119 YE 120


>gi|241664604|ref|YP_002982964.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309780574|ref|ZP_07675321.1| KDP operon transcriptional regulatory protein KdpE [Ralstonia sp.
           5_7_47FAA]
 gi|240866631|gb|ACS64292.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308920729|gb|EFP66379.1| KDP operon transcriptional regulatory protein KdpE [Ralstonia sp.
           5_7_47FAA]
          Length = 234

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +R+  R    + G  V EA  V            P+ +++D  +      
Sbjct: 11  TVLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGT-RQPDAVILDLGLPDGDGM 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   T+V V  L   VD    I    AGA+ +L KPF    L   +R L +   
Sbjct: 70  -QLIRELRTWTEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHA 128

Query: 123 SKDEN 127
            + E+
Sbjct: 129 KRGED 133


>gi|196229923|ref|ZP_03128787.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226249|gb|EDY20755.1| GAF sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1947

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 2/121 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD           +  +    +  AT+  +A E  E     + +++D  M  +  
Sbjct: 1827 RKVLIVDDDARNIFALSIVLENQEMNIISATNGRQAIELIENTPDLSMVLMDIMMPEMDG 1886

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     +R       + +  L  +           AGA+ ++ KP N + L   +R    
Sbjct: 1887 YETMRRIRNNARFRSLPILALTAKAMKGDREKCLEAGASDYIAKPVNTDQLLSLLRVWLH 1946

Query: 120  M 120
             
Sbjct: 1947 R 1947



 Score = 78.7 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
            LL+V+      +V   L  D GF    A     A     ++ LP  + +D  +  +L + 
Sbjct: 1561 LLIVEDDPHYARVLLGLARDKGFKGLVAMRGQHALTLA-RQFLPTAITLDIFLPDMLGWT 1619

Query: 64   AH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                ++  P    + V  +      E+   G   GA S+++KP   E L  A   +
Sbjct: 1620 VLNNLKLDPNTRHIPVQIIS---LDEERQHGLSHGAFSYMVKPATTEDLDVAFERI 1672



 Score = 72.5 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LL+V+ + + R+    L       +    +  EA +    +   +  V+D  +  +  
Sbjct: 1681 KRLLVVEDNDLERQSIVELLGHDDIEITTVGTGSEALQELLDKP-FDCGVLDLRLPDMSG 1739

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRF 112
             E +  ++      DV +     +    +  +  +  A S +LK   + E L  
Sbjct: 1740 FELLDRIQAESNLRDVPIVVFTGKELSREEESHLKTVAKSIVLKDVRSPERLLD 1793


>gi|170727651|ref|YP_001761677.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella woodyi ATCC 51908]
 gi|169812998|gb|ACA87582.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Shewanella woodyi ATCC 51908]
          Length = 343

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+VD +     V   +  D  + V  A +   A +       P+ +++D  M+G    
Sbjct: 10  TVLVVDDTPENIDVLAGVLRDL-YKVKVARNGEIALKITRSPSPPDLILLDVMMDGIDGY 68

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++      + + ++  ++  E  + G   GA  ++ KP +   +   ++    +
Sbjct: 69  EVCRQLKEDHSTRHIPIIFVTAKIAQEDEVKGFELGAVDYISKPISPAIVLSRVKTHLAL 128

Query: 121 QKSKDENQF 129
                E   
Sbjct: 129 YNQNRELDR 137


>gi|70733064|ref|YP_262837.1| response regulator/sensory box/GGDEF domain/EAL domain-containing
           protein [Pseudomonas fluorescens Pf-5]
 gi|68347363|gb|AAY94969.1| response regulator/sensory box/GGDEF domain/EAL domain protein
           [Pseudomonas fluorescens Pf-5]
          Length = 707

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           +LL+VD         R L     + V  A S  EA     +  + + +++D  M G+  F
Sbjct: 14  TLLIVDDYPENLLSMRALLQRQDWQVMTAASGVEALGLLLEHEV-DLVLLDVQMPGMDGF 72

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMI-AGARAGANSFLLKPFNRETLRFAMRELPQ 119
                +R         + +L      +  +  G  +GA  +L KPF+ + L+  ++ L +
Sbjct: 73  EVARLMRGSQRTRLTPIIFLTANEQSQDAVIKGYASGAVDYLFKPFDPQILKPKVQALLE 132

Query: 120 MQKSKDENQFLD 131
            Q+++   Q L 
Sbjct: 133 HQRNRRALQHLS 144


>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
 gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +       D G++V  A    E   F       + +V+D  +  +   
Sbjct: 2   RLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEG-HFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                    G  + V  L     +   + G  AGA+ ++ KPF+ E +   MR L +   
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120

Query: 123 SKDENQF 129
              +++ 
Sbjct: 121 GHAQSEL 127


>gi|327470096|gb|EGF15560.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 237

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    E  E   K+ + + ++ D  M  +  
Sbjct: 8   KTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSV-DLIITDIMMPNMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 67  YDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 126

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 127 HRGGEIEQIE 136


>gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +           G+ V   T   +A +       P+  + D  M  + 
Sbjct: 1   MPTIALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANP-PDLAIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + +    + G + GA+ F+ KPF++  L   ++ + + 
Sbjct: 60  GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRR 118

Query: 121 QKSKD 125
              K+
Sbjct: 119 ANPKE 123


>gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1187

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+ D                G  V  AT   EA    +       +++D  M  +  
Sbjct: 1065 KTVLIADDDVRNIFSMTKSLEKHGMKVISATDGKEALHQLDSHPETAIVLMDMMMPEMDG 1124

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +   A +RQ P    + V  +  +           AGA+ ++ KP + + L   +R   
Sbjct: 1125 YESTARIRQHPHFKHLPVIAVTAKAMLGDREKCIAAGASDYISKPVDIDQLTSLLRVWL 1183



 Score = 74.5 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+      K         G+    A           ++  P  +++D  +      E
Sbjct: 799 VLIVEDDTAFGKALLGFTRKRGYKGIVAVRGDHGIALA-QQYQPVAILLDIQLPVKDGWE 857

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  ++       + V+ +      E        GA  F+ KP   + ++   ++L
Sbjct: 858 VMEELKSNSATRHIPVHIMS---SMEVKRESRMKGAVDFINKPIAMDQMKQMFQKL 910



 Score = 54.0 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              +L+V+ +    +   +    F      A SV E+ +   K    + +++D  +     
Sbjct: 919  KKVLIVEENARHAQALSYFLETFKVSSAIAGSVNESVDAL-KNKEVDCVIMDMGIPDKNA 977

Query: 60   LEFIAHVRQMPLGTDVFVYYLLME---VDFEKMIA 91
             E +  ++  P   D+ +     +      E  I 
Sbjct: 978  YEMLETIKHNPGLEDLPIIIFTGKHLSSGEESRIR 1012


>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1131

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LLVD           L  +    V  A+   EA +    +   + +++D  M  +  
Sbjct: 1011 KTVLLVDDDMRNVFSISTLLEENKLTVITASDGQEAIDTLISQSQIDLVLMDIMMPVMDG 1070

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       + +  L  +           AGA+ ++ KP +   L   M    
Sbjct: 1071 YEATRKIRAENRFAKLPIIALTAKAMPGDREKCLEAGASDYITKPLDVNQLLSVMHTWM 1129



 Score = 63.7 bits (155), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+++       V +      G+    A    E   +  +   P  +++D  +  +     
Sbjct: 744 LIIEDDARFASVVQDFARTKGYKTLVALQGDEGLAYARR-YEPTAIILDLHLPALDGISV 802

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
           +  ++     + + V+ +    + + ++     GA ++L KP  ++ L  A   +
Sbjct: 803 LKLLKDDKKLSSIPVHVMSASDEQQLVLP----GALAYLQKPLTKQDLEDAFTRI 853


>gi|253687608|ref|YP_003016798.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754186|gb|ACT12262.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+  R      G  VF+A ++            P+ +++D  +      
Sbjct: 4   TILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGL-LEAATRKPDLIILDLGLPDGDG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I ++R +   + + V  L    D +  I    AGA+ +L KPF    L   +R   +   
Sbjct: 62  IDYIRDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRRHS 121

Query: 123 SKDEN 127
              + 
Sbjct: 122 HTQQE 126


>gi|194367392|ref|YP_002030002.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350196|gb|ACF53319.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 235

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    +R          G+ V  A     A +   +   P+ +++D  M G    
Sbjct: 6   RVIVVDDDASIRDAIADCLLLHGYQVRVAA-GAMALDMLLQAERPDVIILDWMMPGEDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + +  L         + G   GA+ +L KPF+   L   +R L + 
Sbjct: 65  SVCRRLQARA----IPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLRR 120

Query: 121 QKSKDEN 127
           Q      
Sbjct: 121 QDKLRTQ 127


>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF+V  A     A +  E    P+ L++D  + G   
Sbjct: 19  RRVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEA-WQPDLLILDIMLPGFDG 77

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    D   M+ G   GA+ ++ KPF+   L   +  L +
Sbjct: 78  LEVCRRVQAQ---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLR 134

Query: 120 MQK 122
             +
Sbjct: 135 RVE 137


>gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 2   RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIEGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 118 QQYLQENEL 126


>gi|319407929|emb|CBI81583.1| transcriptional regulator BatR [Bartonella schoenbuchensis R1]
          Length = 240

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 NARNQ 131


>gi|294643137|ref|ZP_06720968.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292641520|gb|EFF59707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 947

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L++D +  +R   R L +   + V EA    E      K  +P+ ++ D  M G+   
Sbjct: 701 SVLVIDDNADIRSYVRRLLHT-DYTVIEAADGSEGIRKAMK-YVPDLIISDVMMPGIDGI 758

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPF+ + L   +R L   
Sbjct: 759 ECCRRLKSELQTCHIPVILLTACSLDEQRIQGYDGGADSYISKPFSSQLLLARVRNLIDS 818

Query: 121 QKSKDE 126
            +   +
Sbjct: 819 HRRLKQ 824


>gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +R          GF V E  +  +A E  E+  + + +++D  + G+ 
Sbjct: 1   MTTILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNV-DIVILDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     D+ +  L   V  +  + G   GA+ ++ KPF+   L   ++ L 
Sbjct: 60  GFRVCKSIRKNNE--DIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLL 117

Query: 119 QM-QKSKDENQFL 130
           +  QK+K + + +
Sbjct: 118 RRIQKNKKDLELI 130


>gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
 gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AB058]
 gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+++    +         + G+         +  E  +++   + L++D  +  +   
Sbjct: 2   RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQY-DLLILDVMLPDIEGW 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +RQ    + + V +L  +      + G   GA+ +L KPF+   L   ++ L + 
Sbjct: 61  SVLQVLRQ---FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRR 117

Query: 121 QKSKDENQF 129
           Q+   EN+ 
Sbjct: 118 QQYLQENEL 126


>gi|171060214|ref|YP_001792563.1| response regulator receiver modulated diguanylate cyclase
           [Leptothrix cholodnii SP-6]
 gi|170777659|gb|ACB35798.1| response regulator receiver modulated diguanylate cyclase
           [Leptothrix cholodnii SP-6]
          Length = 322

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             LL+VD   I  +    +F      VF ATS  +A   C     P+ +++D  M G+  
Sbjct: 23  RRLLIVDDQPINIQALYQVF-AADHQVFMATSGPQALALCLS-KQPDLVLLDVMMPGMDG 80

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     ++  P   D+ V ++    D      G   GA  F+ KP N   +R  +R    
Sbjct: 81  FEVCRRLKADPATADIPVIFVTAHSDEAAETLGLDVGAVDFISKPINPNIVRARVRTHVT 140

Query: 120 MQKSKDENQ 128
           ++   D  +
Sbjct: 141 LKAQSDLLR 149


>gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
 gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            LL+V+    +  +     +  G+ V       EA +    E + + +V+D ++ G   +
Sbjct: 22  RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAE-MYDLIVLDLNLPGVDGM 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+     +  V  L         I G  AGAN ++ KPF+ + L   +R L + 
Sbjct: 81  EILRELRKEDE--ETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRR 138

Query: 121 QKSKD 125
           +  + 
Sbjct: 139 KFIQK 143


>gi|119488888|ref|ZP_01621850.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119455049|gb|EAW36191.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 657

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+L+VD + I   +   +    G+ V  A S   A    +    P+ +++D  M  +  
Sbjct: 11  KSILVVDDTPINLTLLTRMLTTQGYEVRVAPSGVLALRSVQMSP-PDLILLDIMMPEMDG 69

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F   ++      ++ + +L    D    +     G   ++ KPF    +   +   
Sbjct: 70  YHFCRLLKDQAETREIPIIFLSALDDASDKVKAFEMGGVDYITKPFQLTEVLARIENH 127


>gi|121596078|ref|YP_987974.1| response regulator receiver protein [Acidovorax sp. JS42]
 gi|222112234|ref|YP_002554498.1| response regulator receiver protein [Acidovorax ebreus TPSY]
 gi|120608158|gb|ABM43898.1| response regulator receiver protein [Acidovorax sp. JS42]
 gi|221731678|gb|ACM34498.1| response regulator receiver protein [Acidovorax ebreus TPSY]
          Length = 120

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L VD S  +RK+        G+ V EA    +A E  E     + ++ D++M    
Sbjct: 1   MQSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKAETHD-IHLVLADQNMPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+ P    + +  L  E   +   AG  AGA  +L+KPF+   L   ++++ 
Sbjct: 60  GIGLTRKLREHPRFKSIPILILTTESSDQMKQAGRSAGATGWLVKPFDPTRLIEVIQKVI 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|71909509|ref|YP_287096.1| response regulator receiver [Dechloromonas aromatica RCB]
 gi|71849130|gb|AAZ48626.1| Response regulator receiver [Dechloromonas aromatica RCB]
          Length = 121

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD S   R     +    G+ V  A +  E     +    P+ +++D  M G+  
Sbjct: 4   KNILVVDDSPTERFFTVDVLTKAGYQVSTAETGEEGIAKAKATK-PDLILMDVVMPGLNG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                 + +      + +     +      I G R GA  +L+KP N E L   +  L
Sbjct: 63  YQATRTLTRDEETKGIPIIVCTSKGQETDKIWGLRQGAIDYLVKPLNPEELLQRIAAL 120


>gi|323492751|ref|ZP_08097895.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG
           20546]
 gi|323313126|gb|EGA66246.1| transcriptional regulatory protein CpxR [Vibrio brasiliensis LMG
           20546]
          Length = 221

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    +  +   +    G++V        A ++ EK+ + + +++D  +  + 
Sbjct: 1   MSRILVVDDDIELCHLLLDVLEAEGYLVECVHCGESALKYLEKKTV-DLVLLDVMLPKLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R++       +  L    D E ++ G ++GA+ ++ KPF    L   ++ + + 
Sbjct: 60  GM-QVARKICQRFATPILMLTALNDEESILDGYQSGADQYIAKPFKVPELLTRIKAIFRR 118

Query: 121 QKSKDENQ 128
              + + Q
Sbjct: 119 VGLEKQRQ 126


>gi|319404967|emb|CBI78569.1| transcriptional regulator BatR [Bartonella sp. AR 15-3]
          Length = 240

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 2/125 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +++LVD    +           G+ V   T    A +       P+  + D  M  +  
Sbjct: 9   QTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHP-PHLAIFDIKMPRMDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R++   +D+ V +L  + D    + G + GA+ F+ KPF++  L   ++ + +  
Sbjct: 68  M-ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126

Query: 122 KSKDE 126
            ++++
Sbjct: 127 HARNQ 131


>gi|319795485|ref|YP_004157125.1| two component LuxR family transcriptional regulator [Variovorax
           paradoxus EPS]
 gi|315597948|gb|ADU39014.1| two component transcriptional regulator, LuxR family [Variovorax
           paradoxus EPS]
          Length = 340

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD       V     ++ G+ V  AT+  +A +    +  P+ +++D  M G+  F 
Sbjct: 26  VLIVDDVPDNLAVLHDALDESGYTVLIATNGEQALQRA-AQARPDIVLLDAMMPGIDGFE 84

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       + + ++    + E ++A   AG   ++ KP   + +   M    Q  
Sbjct: 85  VARRLKADAATAHIPIVFMTGLTETEHLVAALEAGGVDYVTKPIKPKEVLARMNVHLQGA 144

Query: 122 KSKDENQF 129
           +   ++  
Sbjct: 145 RRARQDAR 152


>gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    + +       + GF    A       +        + +++D ++     
Sbjct: 5   KKILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPY-DLILLDLNLPELNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E  + VR+      + +  L    + E  I G   GA+ +L+KPF+   L   +    +
Sbjct: 64  YEVCSEVRKRK--PSIPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIK 121

Query: 120 M 120
            
Sbjct: 122 R 122


>gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M S+L+++    + ++ R      G+         +  E     +    +++D  +    
Sbjct: 1   MRSVLIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIY-EVIIVDLMLPDKN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E I  VR       + +  +  + +    I G   GA+ +L KPF+   L   ++   
Sbjct: 60  GYEIIKAVRNRFE---IPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHI 116

Query: 119 QMQKSKD 125
              +   
Sbjct: 117 NRYERLK 123


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +RK+      + G+ V +A    E  E   K  + + +V+D  M  +   
Sbjct: 14  TILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDV-HLIVLDIMMPKIDGI 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++     + +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 73  HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129


>gi|227329793|ref|ZP_03833817.1| DNA-binding transcriptional activator KdpE [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+  R      G  VF+A ++            P+ +++D  +      
Sbjct: 4   TILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGL-LEAATRKPDLIILDLGLPDGNG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I ++R +   + + V  L    D +  I    AGA+ +L KPF    L   +R   +   
Sbjct: 62  IDYIRDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRRHS 121

Query: 123 SKDEN 127
           +  + 
Sbjct: 122 NTQQE 126


>gi|219685410|ref|ZP_03540228.1| response regulatory protein [Borrelia garinii Far04]
 gi|219672966|gb|EED29987.1| response regulatory protein [Borrelia garinii Far04]
          Length = 305

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+VD S     +  ++     + V  AT+  +A +  EK+  P+ +++D  +     
Sbjct: 13  QKLLIVDDSPTNLDLLVNILQGA-YEVEVATNGLDALKQVEKDN-PDLILLDIGLPDING 70

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P   ++ V ++      +  + G   G   ++LKPFN   +   ++   +
Sbjct: 71  YEVCRKLKSDPDTKEIPVIFISSRGSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLE 130

Query: 120 MQKSKD 125
           +++ +D
Sbjct: 131 LKRLRD 136


>gi|171059133|ref|YP_001791482.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Leptothrix cholodnii SP-6]
 gi|170776578|gb|ACB34717.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Leptothrix cholodnii SP-6]
          Length = 377

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD       V   L    G+ V  A S   A  +  +   P+ +++D  M  +   
Sbjct: 14  TILIVDDMPTNLAVIGALLQANGYRVLAAQSGEAALRYAARSPAPDLVLLDVVMPTMDGY 73

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+ P    + V +L +  +      G   GA  ++ KP     +   +R     
Sbjct: 74  EVLRRLREEPATALLPVVFLTVLGEPSDEELGLSLGAADYISKPIQPAIVLARVRTQIDA 133

Query: 121 QKSKDENQ 128
            ++++  +
Sbjct: 134 ARARELLR 141


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ + +A +     E  EK    + +++D  +  + 
Sbjct: 1   MVKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEA-DLVLLDIMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
 gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
          Length = 221

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +    ++ +        G     A    +A     K    +  ++D  M  + 
Sbjct: 1   MAIVLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTIL-KNTPVDLAILDIMMPHLD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F      R+M    ++ + +L  +   +  + G   GA+ ++ KPF+ + L   +  L 
Sbjct: 60  GFSVCKIAREM---YNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALL 116

Query: 119 QMQKSKDENQFL 130
           +   S++  + L
Sbjct: 117 RRSSSENTPETL 128


>gi|161615074|ref|YP_001589039.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|198244488|ref|YP_002214684.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205351980|ref|YP_002225781.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207856160|ref|YP_002242811.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|161364438|gb|ABX68206.1| hypothetical protein SPAB_02834 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|197939004|gb|ACH76337.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271761|emb|CAR36595.1| KDP operon transcriptional regulatory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206707963|emb|CAR32252.1| KDP operon transcriptional regulatory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326622440|gb|EGE28785.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326627020|gb|EGE33363.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 225

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HAA 121


>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 238

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G+ V  A +   A +        + +V+D  +  +   
Sbjct: 2   RILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDY-DLVVLDRMLPDMDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +         V  L      +  + G   GA+ +L+KPF    L   +R L + 
Sbjct: 61  QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR 118


>gi|332290136|ref|YP_004420988.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
 gi|330433032|gb|AEC18091.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
          Length = 220

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+   ++  V      D  + V    +   A    + +   + +++D  +     L
Sbjct: 2   RVLLVEDDPMIANVLSANLKDASYAVDWVENGELALTAVKSQPY-DLVLLDLGLPKKDGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +A +RQ        +  L    D    + G   GA+ +++KPF+   L   +R   + 
Sbjct: 61  EVLAQLRQQQFSF--PIIILTARDDLPSRLQGLDGGADDYIIKPFDMAELLARIRVALRK 118

Query: 121 Q 121
           Q
Sbjct: 119 Q 119


>gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 219

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         R    + G++V         +   E E   + LV+D  + G   +
Sbjct: 2   RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEY-DLLVLDVMLPGQDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V +L    D    + G   GA+ +L KPF+   L   ++ + +  +
Sbjct: 61  T-LLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119

Query: 123 SKDENQFLDA 132
            +D N    A
Sbjct: 120 PRDSNTLRAA 129


>gi|291549941|emb|CBL26203.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A     A         P+ +++D  +  
Sbjct: 1   MNKSLILVVEDDTSVRNLITTTLKTHEYRYLTAPDGQSAI-LETSSHNPDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  IDGV-EIIKKIRTWSNMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QMQKSKDENQFLDAI 133
           +      +    +A+
Sbjct: 119 RRLSMMQKVSPAEAV 133


>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
 gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
          Length = 250

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + K            V  A    EA +   +E   + +++D ++    
Sbjct: 20  MIHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQKL-QERPYDLVLLDITLPDGS 78

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  V++        V +L    D   ++ G   GA  ++ KPF    L   +R + 
Sbjct: 79  GYSVCNAVKRD---YQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVL 135

Query: 119 QMQKSKDENQFLDAI 133
           +  K +   + +  +
Sbjct: 136 RHTKRQSNIERVQDL 150


>gi|229130510|ref|ZP_04259466.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228652849|gb|EEL08731.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
          Length = 219

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 7   VDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLEFIA 64
           VD    +R + R      G+ V  A    EA E   +   P+ L++D  +      E + 
Sbjct: 2   VDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG--PDVLILDVMLPDTDGYELLR 59

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R+     D+ V  L  +      + G + GA+ ++ KPFN   L   ++ + +  K  
Sbjct: 60  LFRERD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKT 117

Query: 125 D 125
           +
Sbjct: 118 E 118


>gi|227114743|ref|ZP_03828399.1| DNA-binding transcriptional activator KdpE [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+  R      G  VF+A ++            P+ +++D  +      
Sbjct: 4   TILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGL-LEAATRKPDLIILDLGLPDGNG- 61

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I ++R +   + + V  L    D +  I    AGA+ +L KPF    L   +R   +   
Sbjct: 62  IDYIRDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRRHS 121

Query: 123 SKDEN 127
           +  + 
Sbjct: 122 NTQQE 126


>gi|255283852|ref|ZP_05348407.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255265573|gb|EET58778.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 240

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    +    +      G+ V       E   F  KE   + +++D  + G+   
Sbjct: 16  RILMIEDDKKLCASVKFQLEKQGYAVDVCHDGEEGL-FLMKERAHDCVLLDRMLPGMDGL 74

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                    G    V  L    D +  +AG   GA+ +++KPF  E L   +R   + 
Sbjct: 75  SVLKNARISGVRTPVILLTALGDLQDKVAGLDMGADDYIVKPFAFEELTARIRSTLRR 132


>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+++    + ++ R  F   GF V    +  E  +    E   + +++D  + G+  
Sbjct: 3   TRILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDY-SLIIVDLQLPGMNG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E  +H+R+     +V +  +  + +    I     GA+ ++ KPF+   L    +    
Sbjct: 62  YELCSHIRKN---KEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLM 118

Query: 120 M 120
            
Sbjct: 119 R 119


>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 232

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|329956927|ref|ZP_08297495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328523684|gb|EGF50776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 868

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D +  +R   + L +   + V +A           K  +P+ ++ D  M G+   
Sbjct: 622 TVLVIDDNADIRHYVKALLSKE-YRVLDAADGAAGIRLAMK-YVPDVIISDVMMPGMDGL 679

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++       + V  L      E+ I G   GA+S++ KPFN + L   +R L   
Sbjct: 680 ECCRRLKGELQTCHIPVILLTACSLDEQRIQGYEGGADSYISKPFNSQLLLSRIRNLITN 739

Query: 121 QKSKDE 126
            +   +
Sbjct: 740 HRQLKQ 745


>gi|296155941|ref|ZP_06838780.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893447|gb|EFG73226.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1188

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++LL +          H+    G  +  A +  EA E  E     + +++D  M  +  
Sbjct: 1067 RTILLAEDDVRNIFALSHVLEPLGAKLQIARNGREALEALENGPEVHLILMDIMMPEMDG 1126

Query: 62   FIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              A   +R+ P    + +  L  +           AGA+ ++ KP + + L    R   +
Sbjct: 1127 LTAMGEIRRNPRFAHLPIIALTAKAMANDRTRCLEAGADDYVSKPIDVDKLVALCRVWLR 1186

Query: 120  MQ 121
             +
Sbjct: 1187 QR 1188



 Score = 77.2 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           ++ V+      ++ R L ++  F    A+          +++ P  +++D  +     L 
Sbjct: 801 IVAVEDDLAFAEILRDLTHELDFDFVHASDAASGLALV-RDMRPAAVLLDVGLPDRSGLT 859

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  ++  PL   + ++ +      +        GA  + LKP  R T+  A+R L    
Sbjct: 860 VLEWLKNDPLTRHIPIHIVSA---TDHADKALHLGAIGYTLKPTARGTMEAAIRRLEARL 916

Query: 122 KSK 124
           + +
Sbjct: 917 QQR 919



 Score = 67.5 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
              +L+++    +R+  R L       +    ++ EA  +  K +  + +V D ++     
Sbjct: 921  KRVLVIEDDAPMRESIRALLQSENTEIVAVATLAEALAYLAK-VTFDCVVTDLALPDGTG 979

Query: 60   LEFIAHVRQMPLGTDVFVYYLLME---VDFEKMIA 91
             + +  +    +   + V          D E  + 
Sbjct: 980  YDLLERLATNTVHVSLPVIVYTGRMLSDDEEHRLR 1014


>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LE 61
           +L+V+    V    +      G+ V  A +  E  E          L++D  + G+  L+
Sbjct: 6   ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEAT-LLILDVMLPGMTGLD 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R    G  V V  L      E  +AG + GA+ +L KPF  E L   +  L +  
Sbjct: 65  LCQSLRA--EGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRG 122

Query: 122 KSKD 125
           + + 
Sbjct: 123 REQR 126


>gi|239996276|ref|ZP_04716800.1| putative response regulator [Alteromonas macleodii ATCC 27126]
          Length = 403

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  +L+VD   I R +  ++  + G+    EA    EA +    E  P+ +++D  M G+
Sbjct: 1   MK-ILIVDDEAINRTLLTNMLYNAGYKECIEAVDGVEAIKKFTHEK-PDLVLLDVVMPGL 58

Query: 60  LEFIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R++  G  + + ++    D E ++     G N F  KPF+R  L   +R  
Sbjct: 59  SGFDVAPKIRKLAKGPYLPILFITALEDKESLVRCLEVGGNDFATKPFDRHILIAKIRAH 118

Query: 118 PQMQKSKDENQF 129
            +++   +  + 
Sbjct: 119 LKIRALSEHIEQ 130


>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             L+V+    +    R +  D G+ V  A                + +V+D  +  +  F
Sbjct: 2   RALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALV-WEYDVIVLDWMLPRLSGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++Q+       V  L         + G   GA+ +L+KPF+R  L   +R L +   
Sbjct: 61  -DLLKQLRTKKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119

Query: 123 SKDE 126
            + E
Sbjct: 120 GESE 123


>gi|168215939|ref|ZP_02641564.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC
           8239]
 gi|182381840|gb|EDT79319.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC
           8239]
          Length = 237

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+++    +R           +    A +  +          P+ +++D  +  +   I
Sbjct: 5   ILVIEDEKAIRNFVTATLEINSYQCHTAFNGSQGM-ILAISKRPDIIILDLGLPDMDG-I 62

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             ++++   ++  +  +    +    I     GA+ +L KPF+ + L   +R   + 
Sbjct: 63  EIIKKVREWSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRK 119


>gi|126699934|ref|YP_001088831.1| two-component response regulator [Clostridium difficile 630]
 gi|255101465|ref|ZP_05330442.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307338|ref|ZP_05351509.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115251371|emb|CAJ69203.1| Two-component response regulator [Clostridium difficile]
          Length = 238

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +            F V +A    EA +    E     +++D  M  +  
Sbjct: 3   QNILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILI-ENDIKLIIMDVMMPNLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 62  LKTTLKIREK-RNIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRR 119


>gi|114778037|ref|ZP_01452937.1| type IV pilus biogenesis protein PilB [Mariprofundus ferrooxydans
           PV-1]
 gi|114551643|gb|EAU54196.1| type IV pilus biogenesis protein PilB [Mariprofundus ferrooxydans
           PV-1]
          Length = 732

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            ++L+VD S  VR +   + +  G+ V +A    +A +  ++ + P+ ++ D  M  +  
Sbjct: 602 QTVLVVDDSSSVRNLVEFVLDADGYKVLQAEDGQQAWDMLQR-MKPSLVLTDCEMPNMTG 660

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E +  +R+     DV V  L      E  + G +AGA  ++ KP     L+  +R+   
Sbjct: 661 MELLKQMREQDRFDDVPVILLTARRSEEDEVQGLKAGAADYIGKPVEPLKLQARVRKTLS 720

Query: 120 MQK 122
           + +
Sbjct: 721 LYE 723


>gi|86132961|ref|ZP_01051551.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85816479|gb|EAQ37667.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 243

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL----PNYLVIDESME 57
           +++LL +       + +       F V       EA     K        +  V D  M 
Sbjct: 5   NNILLAEDDFDFGSILKQYLEIHNFEVTWCKDGEEAHNAFAKAHSEGVTYDICVFDVMMP 64

Query: 58  GVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
            +  F    + + +  +V   +L      E  I G + GA+ +++KPF  + L   +  +
Sbjct: 65  KMDGFTLAEKVISINPEVPFVFLTARKMKEDRIQGLKLGADDYIVKPFEADILVLRLTNI 124

Query: 118 PQMQK 122
            +  +
Sbjct: 125 LKRSR 129


>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+  H + ++ +      GF V            C KE   + L++D  + G+ 
Sbjct: 1   MKRILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLN-CIKEEEFDLLILDIMLPGID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++++    D+ +  +  + +    I G   GA+ ++ KPF+   L   +      
Sbjct: 60  GF-EILKRVRDVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISK 118

Query: 121 QKSKD 125
            +   
Sbjct: 119 YERLK 123


>gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
 gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
          Length = 263

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  + +   +  G+ V  A    EA    +K + P+ LV+D  +  V   
Sbjct: 39  RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDK-VGPDVLVLDIMLPDVDGL 97

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R           +L         + G  +GA+ ++ KPF+ E L   +R L +   
Sbjct: 98  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 157

Query: 123 SKDE 126
             + 
Sbjct: 158 HLER 161


>gi|253996017|ref|YP_003048081.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylotenera mobilis JLW8]
 gi|253982696|gb|ACT47554.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Methylotenera mobilis JLW8]
          Length = 332

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 54/128 (42%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      KV + +  D  + +  A +  +A E  + E  P  +++D  M  +  F
Sbjct: 11  KVLIVDDEPFNLKVLKQILQDH-YRLSFAKNGMDALELVKTE-QPQLILLDVMMPDMTGF 68

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++  P   ++ V ++    D      G   GA  ++ KP     ++  ++    +
Sbjct: 69  EVCAKLKADPNTQNIPVIFVTALSDENDEATGLTHGAVDYITKPVYPAVVKARVKTHLSL 128

Query: 121 QKSKDENQ 128
            ++++  +
Sbjct: 129 VRAENLQR 136


>gi|221640705|ref|YP_002526967.1| response regulator receiver protein [Rhodobacter sphaeroides KD131]
 gi|221161486|gb|ACM02466.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131]
          Length = 418

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L+VD S   R++       +G+ V EA +  EA   C+   + + ++ D  M G+  
Sbjct: 14  RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALCQGGDV-DIVLSDWMMPGMSG 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---E 116
           LE    +R +P     +   L       +++ G   GA+ +L+KP   + LR  +R    
Sbjct: 73  LELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAPDELRARLRAGER 132

Query: 117 LPQMQ-KSKDENQFLD 131
           +  MQ +  D+NQ L+
Sbjct: 133 VLSMQAELVDKNQLLE 148


>gi|51702437|gb|AAU08791.1| RisA [Bordetella ansorpii]
          Length = 210

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 13  VRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLG 72
           +R + R   ++ GF VF A    E  +  ++E   + LV+D  + G        R     
Sbjct: 1   LRDLLRRYLSEQGFNVFVAEDAKEMGKLWQREH-FDLLVLDLMLPGEDGLSICRRLRGGH 59

Query: 73  TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125
            +  +  L  + +    I G   GA+ +L KPFN   L   +  + + + +++
Sbjct: 60  DNTPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEE 112


>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++     +  G+    A           +E + + +++D  + G+   
Sbjct: 2   RVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDV-DVVLLDIMLPGLDGR 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R       + V  L    + E  +    AGA+ +L KPF  E L   +R L + 
Sbjct: 61  EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRR 118


>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 229

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GFM         A     ++  P+ +++D  + G+
Sbjct: 1   MRARVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAF-RDNRPDIVLLDLMLPGM 59

Query: 60  --LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++    +R       V +  L  + D   ++ G  +GA+ +++KPF  + L   MR  
Sbjct: 60  SGIDVARAIRAESG---VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRAR 116

Query: 118 PQM 120
            + 
Sbjct: 117 LRR 119


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +           GF         +A     +E   + +++D  +  + 
Sbjct: 1   MSRILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQED-FDLIILDVGLPDID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            F    +    G    V  L         +AG   GA+ ++ KPF+ E L   +R   +
Sbjct: 60  GFEVLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118


>gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 1/120 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    ++          G+ V  A       E        + +++D  + G  
Sbjct: 1   MSNILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRG-EAAALTGQHDLIILDIMLPGRD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    R    G +  V  L        ++AG R GA+ ++ KPF+   L   +  L + 
Sbjct: 60  GFSVCSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRR 119


>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ +      GF V    +     +    E   N +++D  +  V 
Sbjct: 1   MSKILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNED-FNLIILDLMLPNVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR+     +  +  +  + +    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKKVREK---KNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|253688514|ref|YP_003017704.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755092|gb|ACT13168.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+++ +  +       F   G+++ +A           +    + +++D  +  + 
Sbjct: 1   MTRLLIIEDNPELVANLYEFFEPLGYVLDDARDGATGLRMATQNDY-DAILLDLMLPRLD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ      V V  L      +  + G   GA+ +L+KPF+ + L   ++ L 
Sbjct: 60  GMTLCRKLRQEFQNP-VPVLMLTARDPIDDRVQGLALGADDYLVKPFSLKELDARIKALV 118

Query: 119 QMQKSKD 125
           +  + + 
Sbjct: 119 RRSQGRQ 125


>gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +++VD    + ++      + G+    A S  EA            +++D  M G  
Sbjct: 1   MK-IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPGIT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            ++ I  +R+    +D+ +  +  +      I G   GA+ +++KPFN   +   +R L 
Sbjct: 60  GIDVIKELRKD---SDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLL 116

Query: 119 QMQKSK 124
           +  + K
Sbjct: 117 RRSQKK 122


>gi|225028586|ref|ZP_03717778.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353]
 gi|224954068|gb|EEG35277.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353]
          Length = 233

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKTVVLVVEDDRPIRNLIVTTLKMHDYKYLTAKNGASAIMEASSHH-PDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    +GA+ ++ KPF+ E L   +R   
Sbjct: 60  MEGV-DVIKKIRTWSNMPIIVISARSEDSDKIEALDSGADDYITKPFSVEELLARIRVTQ 118

Query: 119 QMQKSKDENQFLDA 132
           +        +  +A
Sbjct: 119 RRLAIIQAGEEQEA 132


>gi|150003880|ref|YP_001298624.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|149932304|gb|ABR39002.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
          Length = 227

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+ +  LLV+    +  + +    +  F++  A    E      ++  P+ LV D  M  
Sbjct: 1   MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQK-PDVLVADVMMPR 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 60  MDGFEMVRRIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119

Query: 119 QMQKSKDE 126
                + E
Sbjct: 120 HKAFVEKE 127


>gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  + R    + G+ V +A S  EA          + +++D  + G+ 
Sbjct: 1   MKKILVVEDDLNINNMLREALEEAGYEVVQAYSGTEAM-LNVGMTEFDLILLDLMLPGMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++         V  L  + + +  +     GA+ ++ KPF  + L   +    + 
Sbjct: 60  G-EEFLKLFNKKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRR 118

Query: 121 -----QKSKDE 126
                +KS+DE
Sbjct: 119 VNRNIEKSQDE 129


>gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 916

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD              +    V  A +  EA+E   +    + +++D  M  +  +
Sbjct: 794 RVLVVDDDMRNVFAITAALEEQEIEVLFAGNGREAQEILMQTPGIDLVLMDIMMPEMDGY 853

Query: 63  IAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A   +R+MP    + +  L  +          +AGA+ ++ KP +   L   MR     
Sbjct: 854 EAMQSIRKMPEYEKIPIIALTAKAMKGDRDKCLQAGASDYISKPLDINQLLSLMRVWLYR 913

Query: 121 Q 121
           +
Sbjct: 914 K 914


>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 222

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 1/127 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +       D G++V  A    E   F       + +V+D  +  +   
Sbjct: 2   RILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEG-HFLGDTEPYDAIVLDIGLPQMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R    G  + V  L     +   +AG  AGA+ ++ KPF+ E +   +R L +   
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120

Query: 123 SKDENQF 129
               ++ 
Sbjct: 121 GHASSEL 127


>gi|332096243|gb|EGJ01246.1| acetoacetate metabolism regulatory protein atoC domain protein
           [Shigella dysenteriae 155-74]
          Length = 133

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           + +L+VD    VR++    F   GF    A +   A      ++ P+ +++D  M  +  
Sbjct: 5   NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-ADIHPDVVLMDIRMPEMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A        T   V  +    + E  +   R GA  +++KPF+ + L   ++   Q+Q
Sbjct: 64  IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123

Query: 122 KSKDENQFL 130
             K E + L
Sbjct: 124 SMKKEIRHL 132


>gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 243

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    + +         G+ V ++ +  EA E        + +++D  + G   LE
Sbjct: 5   ILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNH-FDLILLDIMLPGLNGLE 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  + +        V  L         ++G  AGA  ++ KPF  E L   +R   ++ 
Sbjct: 64  VLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVALKLY 123

Query: 122 KSKDE 126
           ++++ 
Sbjct: 124 EARNR 128


>gi|197302733|ref|ZP_03167787.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
 gi|197298315|gb|EDY32861.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
          Length = 244

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +      +  G+ + +A    EA    EKE + N L++D  M  + 
Sbjct: 14  MYNILVCDDDKEIVEAIDIYLSQEGYHILKAYDGVEALNILEKEKV-NLLILDVMMPKLD 72

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              A ++     + V +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 73  GIRATLKIRETNS-VPIIILSAKSEDSDKILGLNIGADDYVTKPFNPLELVARVKSQLRR 131

Query: 121 QK 122
             
Sbjct: 132 YN 133


>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           +++L+VD    + ++ R    +  F V  A    EA    ++  +   ++ D  M G   
Sbjct: 5   NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVL-DIMMPGQNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R       V + +L    D    I G   G + +++K  +   +   ++ + +
Sbjct: 64  FELCRRIRAESP---VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLR 120

Query: 120 MQKSKD--ENQFLD 131
              ++   E + LD
Sbjct: 121 RSATRRPMEERVLD 134


>gi|166366087|ref|YP_001658360.1| CheY family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166088460|dbj|BAG03168.1| two-component response regulator CheY subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 121

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +LLV+ S   R++   L  + G  V  AT   EA E  ++   P+ +V+D  M  + 
Sbjct: 1   MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRAN-PDLVVLDIVMPRMN 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    ++  P   +V V    ++ +      G + GA+++++KPF      + +++L 
Sbjct: 60  GYEVCRRLKSDPKTKNVPVVICSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|51245645|ref|YP_065529.1| two-component system sensory/regulatory protein [Desulfotalea
            psychrophila LSv54]
 gi|50876682|emb|CAG36522.1| related to two-component system sensory/regulatory protein (hybrid
            family) [Desulfotalea psychrophila LSv54]
          Length = 1358

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           +  + G  +  A    E  E  +++   + +++D  M  +  
Sbjct: 1239 RKILLVDDDMRNVFALSSVLEERGINIVVARDGIECLEKLKEQDHFDAVLMDIMMPRMDG 1298

Query: 62   FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+      + +  L  +           AGA+ +L KP + + L   +R   
Sbjct: 1299 YEAMQEIRKNIQHKKLPIIALTAKAMKGDRSKCIEAGASDYLAKPVDADKLISMLRVWL 1357



 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             SLL+++      +V R +  D GF    A+         +    P+ +++D  + G+  
Sbjct: 971  KSLLIIEDDENFSRVLRDIGRDRGFACILASDGETGLALAD-HYTPSAIILDIGLPGIDG 1029

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL---RFAMRE 116
               +  ++       + V+++             R GA  +L KP + E +      +  
Sbjct: 1030 WTVMERLKDNSKLRHIPVHFMSASDSSMD---AMRMGAIGYLTKPVSMEKVEETLAKLEN 1086

Query: 117  LPQM 120
            +   
Sbjct: 1087 VISR 1090



 Score = 67.5 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 7/138 (5%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
              LLLV+   I R+    L  +         S   A     +E   + +++D  +  +  
Sbjct: 1093 KRLLLVEDDKIQRESIIELIGNSDVKTTAVDSGAGAILELNRERY-DCMILDLGLGDMSG 1151

Query: 60   LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPF-NRETLRFAMRELP 118
             E +  +RQ      + +         +   A     A + ++K   + E L        
Sbjct: 1152 FELLEKIRQSESLYRLPIIIYTGRDLTQTEEAQLNKYAETIIVKGVKSPERLLDESALFL 1211

Query: 119  QMQKS---KDENQFLDAI 133
               ++   +++ Q L  I
Sbjct: 1212 HRVEADLPEEKQQMLKLI 1229


>gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510]
          Length = 310

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+VD +                 V  A     A E    ++ P+ +++D  M 
Sbjct: 1   MKRRDMILVVDDTPDTLGFLTEAIEQADLTVLVAIDGESALELV-GQITPDLILMDAVMP 59

Query: 58  GVLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
           G+  F     ++Q+P  + + V ++    D E ++ G  AG   ++ KP   + L   +R
Sbjct: 60  GLDGFETCRRLKQIPHLSHIPVIFMTGLSDTEHVVKGLEAGGVDYVTKPIVVDELIARIR 119

Query: 116 ELP 118
              
Sbjct: 120 VHL 122


>gi|282862260|ref|ZP_06271322.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
 gi|282562599|gb|EFB68139.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
          Length = 1815

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1695 KVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDVTIVLMDIMMPEMDGY 1754

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+MP    + +  L  +            GA+ ++ KP + + L   M    +
Sbjct: 1755 ATTTAIRRMPQFAGLPIVALTAKAMKGDREKAIDCGASDYVTKPVDSDHLLSVMERWMR 1813


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+++    + ++        GF +       E      K    + +++D  +  +
Sbjct: 1   MKEKILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGL-LAAKYNHFDLILLDVMLPKM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+    +DV + +L  +      +     GA+ ++ KPF+ E L   ++ L
Sbjct: 60  NGFEVCKRIRED---SDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKAL 116

Query: 118 PQMQKSKDENQ 128
            +    K++ +
Sbjct: 117 LRRSTLKNKKK 127


>gi|242278153|ref|YP_002990282.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM
           2638]
 gi|242121047|gb|ACS78743.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio salexigens DSM 2638]
          Length = 468

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +R + R +    G+ V EA S  +A E     L  N  +ID  MEG+  
Sbjct: 6   KNVLIVDDEPSLRLLIRAVLESDGWNVHEAQSGEQALEMLP-GLTLNAALIDMRMEGMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    +   + V  L    +    +   + GA  +L KP + E L+  + +     
Sbjct: 65  MALLKELNTIMPGLPVIMLTAYGNVNSAVIAMKHGAFDYLTKPADNEELKAVLAKALDYS 124

Query: 122 KSKDENQFLDA 132
           +  DEN+ L +
Sbjct: 125 RLVDENEKLKS 135


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLV+    +      +     + V       +  E+ +     + +++D  +  +   
Sbjct: 2   RILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSY-DLVLLDIELPLLDGI 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R       V +  L    + +  + G  AGA+ +++KP +   L   +R L + 
Sbjct: 61  SLCHQLRSH--NFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118



 Score =  117 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +++VD    +    + L   +G          +  +  E    P+ LV+D  M     
Sbjct: 496 TRVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSH-PDLLVLDIEMPHLNG 554

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E    VR  P    + V ++  + D +      +AGA+ +L KPF    L   +    +
Sbjct: 555 IELCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLK 614

Query: 120 MQKSKD 125
             ++  
Sbjct: 615 RTQNLA 620



 Score = 39.8 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 73  TDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK-------- 124
             +       + D  K +   R G ++FL KP   E     +R++ +   +         
Sbjct: 443 PPIPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVVRDVFRQYYAINTRVMIVD 502

Query: 125 DENQFLDAI 133
           D+ Q L AI
Sbjct: 503 DDPQMLAAI 511


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + +         G+ V +A +     E  E+    + +++D  +  + 
Sbjct: 1   MIKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEA-DLIILDVMLPEIN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   ++V +  L         ++G  AGA+ ++ KPF  E L   +R   + 
Sbjct: 60  GL-EVLRRIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK 118

Query: 121 Q 121
           +
Sbjct: 119 R 119


>gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
 gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +  +        G+ V       EA E    E   + +V+D ++ G+   
Sbjct: 2   RLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDY-DLIVLDLNLPGMDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                      +  V  L         + G  AGAN ++ KPF+ + L   +R L + +
Sbjct: 61  EILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRK 119


>gi|117621097|ref|YP_856714.1| response regulator receiver [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562504|gb|ABK39452.1| response regulator receiver:Metal-dependent phosphohydrolase, HD
           subdomain [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 369

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD S     V   L +   + V  A S  +       + +P+ +++D  M G+   
Sbjct: 8   TILIVDDSPENLMVLTDLLSPT-YRVLAAQSGEKCLRIATGKTIPDLILLDVMMPGMDGY 66

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R  P  + + V  L    D +    G   GA  ++ KP     ++  +R   + 
Sbjct: 67  EVLKQLRITPATSRIPVVLLTALADPQSEEYGLSLGAADYITKPIKPAIVQARVRTQLEA 126

Query: 121 QKSKD----ENQFLDA 132
           ++++D    +N  L+A
Sbjct: 127 KQARDGLQNQNAALEA 142


>gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter
           arcticus 273-4]
 gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR
           family) [Psychrobacter arcticus 273-4]
          Length = 224

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 49/128 (38%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    +           G MV   +   +  E   ++ + + +++D ++    
Sbjct: 1   MARILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQG-EMALQDGMFDAVLLDLTLPKGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                        D  V  +         +AG  AGA+ +L+KPF  + +   ++ L + 
Sbjct: 60  GMTVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRR 119

Query: 121 QKSKDENQ 128
            + + + +
Sbjct: 120 SQGRSQPE 127


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L++D    +  + +      G+ V  A    +      KE  P  L++D  + G+   
Sbjct: 4   RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMA-KENPPELLILDIMLPGLDGW 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R+        +  L    + E  + G   GA+ +L KPF  E L   ++ L + 
Sbjct: 63  EICQRFRKDNF---TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR 119

Query: 121 Q 121
           +
Sbjct: 120 R 120


>gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
 gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
          Length = 231

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    + ++      + GF V        A  + EKE + +  V+D  +  +  F
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V  L  + +    I G   GA+ ++ KPFN   +   ++   +  +
Sbjct: 63  -QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121

Query: 123 SKDE 126
             ++
Sbjct: 122 RYNQ 125


>gi|270284725|ref|ZP_05966555.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
 gi|270276295|gb|EFA22149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
          Length = 226

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIA 64
           L+V+    +           G++   A+    A +     L P+ +++D  +  +    A
Sbjct: 2   LVVEDEPTLATAIAQRLTAEGWIARVASDGASAVQ-ASTTLKPDLVIMDVMLPVMDGLEA 60

Query: 65  HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124
             R + +   V V  L    D    I G  AGA+ ++ KPF+   L    + L +  +  
Sbjct: 61  TKRIVAMRP-VPVLMLTARDDETDKIIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 119

Query: 125 D 125
            
Sbjct: 120 K 120


>gi|268679546|ref|YP_003303977.1| metal-dependent phosphohydrolase HD sub domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617577|gb|ACZ11942.1| metal-dependent phosphohydrolase HD sub domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 371

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREF-CEKELLPNYLVIDESMEGVLE 61
           ++ +VD +     +   L   F + V  ATS  +A  +  + E +P+ +++D  M G+  
Sbjct: 12  TIFIVDDTPENLTLVSTLLKPF-YRVKVATSGEKALVYFAQHEAVPDLILLDIVMPGLSG 70

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F  I  +++     D+ V +L      E    G   GA  ++ KP +   +   ++   Q
Sbjct: 71  FDVIVELKKNSKIRDIPVIFLTAMSRVEDEKKGLELGAVDYITKPISPSVVLARIKTHLQ 130

Query: 120 MQK----SKDENQFLDA 132
            +      +D+N++L+A
Sbjct: 131 NKAVADFLRDKNEYLEA 147


>gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 228

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    + +         G+    A                  +++D ++    
Sbjct: 1   MRRILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTG-RALGLTGQYELIILDINLPDIS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E   ++R       + +  L    + E  I G   GA+ +++KPF+   L   +    
Sbjct: 60  GYEICRNIRAD--HPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCF 117

Query: 119 QMQKS 123
           +    
Sbjct: 118 RRSDL 122


>gi|119493631|ref|ZP_01624280.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106]
 gi|119452551|gb|EAW33735.1| hypothetical protein L8106_18651 [Lyngbya sp. PCC 8106]
          Length = 776

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+ D +    ++  +  ++ G+ V   T+   A         P+ +++D  M      E
Sbjct: 13  ILVADDTLESLRLISNALSNRGYDVRSVTNGTLAIASARAAP-PDLILLDIKMPDLSGYE 71

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q  L  ++ V ++    +    +   R G   ++ KPF  E +   ++   +  
Sbjct: 72  VCQQLKQDSLTREIPVIFISALHEPFDKVEAFRVGGVDYITKPFQIEEMLVRIQSQLERY 131

Query: 122 KSKDENQFLD 131
            S+ + Q L+
Sbjct: 132 FSRTQIQHLN 141


>gi|94266261|ref|ZP_01289967.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453143|gb|EAT03611.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 461

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+VD    +R   R + +  G+ V  A +   A +  EK    + ++ D  ME   
Sbjct: 1   MARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHS-FDMVITDLKMELAD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             + +  VR+        V  +      +  +   + GA  +++KPF  E ++F +R + 
Sbjct: 60  GYDVLKKVREFDSL--TPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNIL 117

Query: 119 QMQKSKDENQFLD 131
           +    + EN  L 
Sbjct: 118 EHGSLRLENLALK 130


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++    + +         G+      +     E    +   + +++D  +  +  
Sbjct: 4   KKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDY-DLILLDLMLPELDG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F    R++    D  +  +         +AG   GA+ ++ KPF  E L   +R   + +
Sbjct: 63  FEVA-RRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121

Query: 122 K 122
           +
Sbjct: 122 E 122


>gi|163848627|ref|YP_001636671.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222526562|ref|YP_002571033.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
 gi|163669916|gb|ABY36282.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
 gi|222450441|gb|ACM54707.1| response regulator receiver modulated diguanylate cyclase
           [Chloroflexus sp. Y-400-fl]
          Length = 437

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    V  + R +    G+ V    +     E  +++  P+ +++D  M  +   
Sbjct: 6   RILVAEDEPDVGMLLREILVSEGYEVELVPNGHLLVERAQEQP-PDLILVDLLMPLMDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R     + + +  L    +  +++ G   GA+ +++KP+ RE L   +R   + 
Sbjct: 65  EAIRQLRNDTRTSHLPMLILTALGESSRIVEGLETGADDYIVKPYEREVLLARVRSQLRR 124


>gi|332884908|gb|EGK05163.1| hypothetical protein HMPREF9456_03076 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+V+    +        N  GF          A E  +     + +++D  M  + 
Sbjct: 1   MK-ILIVEDEQNISSFIERGLNISGFETEICNDGLHAWEKLQITDY-DLIIMDIIMPFMS 58

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE     RQ        V  L      E ++ G  AGA+ +++KPF    L   +  L 
Sbjct: 59  GLELCKAYRQKFGYI-TPVILLTALSTTEDIVKGLNAGADDYIVKPFKLVELEARINALL 117

Query: 119 QMQKSKDENQ 128
           +  K   E +
Sbjct: 118 RRSKVSTEIE 127


>gi|330996105|ref|ZP_08319998.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329573876|gb|EGG55457.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 905

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 4/129 (3%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF-- 62
           LLVD +  +  V   +F      V  A    EA +   +E   + ++ D  M  +     
Sbjct: 655 LLVDDNADLLDVMHRVF-MCRHKVLLAHDGVEA-QSVIEEHAVDVVISDVMMPNMDGLEL 712

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++     + + V  L  +   E  +   +AG + ++ KPF    L   +    + ++
Sbjct: 713 CRRLKSDINTSHIPVILLTAKNAPEDRVECYKAGCDGYVAKPFELRVLEARVENFLEHKR 772

Query: 123 SKDENQFLD 131
           S   +   +
Sbjct: 773 SAQRDFRQE 781


>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
 gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+ D +  +  V        GF    A    EA     +E  P  +++D  M    
Sbjct: 1   MEKMLIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRRE-APAVILLDVMMPKLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +R+      V +  +    +  + I G   GA+ +++KPF+   +   +R + 
Sbjct: 60  GFEVCRQIREESA---VPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAIL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + +V +       + V  A    +  E  +     + +++D  + G+   
Sbjct: 4   RILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEW-DLVLLDVMLPGLNGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  V V  L         ++G   GA+ ++ KPF  E L   +R + ++
Sbjct: 63  EVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRI 120


>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 4/122 (3%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+++  L+ D    + ++ +    + G+ V  A +  EA E   KE +   +++D  M  
Sbjct: 1   MNTIQILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESV-QLMILDVMMPE 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      VR +     + +  L  + +    I G   GA+ +++KPFN   L   ++ L 
Sbjct: 60  MNGL-EVVRAVRAEYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLL 118

Query: 119 QM 120
           + 
Sbjct: 119 RR 120


>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 222

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+++    +    +    +  F V  A       +        + +++D  + G   +
Sbjct: 2   RILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEY-DLMIVDWMIPGISGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VR+   G+ V + +L  +   E ++ G  AGAN ++ KPF  E L   +R   + 
Sbjct: 61  EVCRQVRK--AGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRR 118


>gi|117925682|ref|YP_866299.1| response regulator receiver sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
 gi|117609438|gb|ABK44893.1| response regulator receiver sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 518

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD           + N     +  A +   A    + E  P+ +++D  M  +   
Sbjct: 6   KILVVDDERATIDHLVAILNG-DHALCVAKNGERALALVQSEPRPDLILLDIVMPEMDGY 64

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR---EL 117
                ++  P   D+ V +L ++   E    G   GA  ++ KP +   ++  ++     
Sbjct: 65  EVCRRLKADPQTCDIPVIFLTVKSSVEDEAYGLELGAVDYIAKPISPPIVKARIKIHLTA 124

Query: 118 PQMQKSKDENQFLDA 132
               K + + +  +A
Sbjct: 125 INESKMRLQKERAEA 139



 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L+ + +     + +H F + G  +  A    EA   C ++   + +++D  M  +   
Sbjct: 392 SILVAEDAEDNALLLKHYFKESGHELTFARDGQEALT-CYRQGAFDLILMDVQMPVMDGY 450

Query: 62  -FIAHVR---QMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                +R   Q      + +  L      + +     AG   FL KP  +  L   +  +
Sbjct: 451 AATRQIRCWEQEEGRATLPIVALTAHAMADAVAEAKAAGCTQFLSKPIQKRRLMEEINNI 510

Query: 118 PQMQ 121
            Q +
Sbjct: 511 IQAR 514


>gi|325846727|ref|ZP_08169642.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481485|gb|EGC84526.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+ D    +R+  +      GF + EA +  EA +  ++E  P+  ++D  + G   
Sbjct: 3   NKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEK-PSVFILDIMLPGISG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+      V +  +  +      I G   G + +++KPFN + L   +R L +
Sbjct: 62  YEVCDTIRK--KYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 251

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             L+VD    + +V     N   F      +  +A     ++  P+ +++D  + G+   
Sbjct: 19  RALVVDDEAALAEVVASYLNREHFTTRIVDNGPDAV-AVARDFDPDVVILDLGLPGMDGL 77

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   +D +V  L         I G   GA+ ++ KPF+   L   +R + +  +
Sbjct: 78  EVC-RQLRTFSDAYVVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAMLRRPR 136

Query: 123 SKDENQ 128
           +  E +
Sbjct: 137 ATPEPE 142


>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 254

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 3/123 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL---PNYLVIDESMEGV 59
            +L V+ +  + ++      D G      +    A    E        + +++D  + G+
Sbjct: 15  RILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLMLPGL 74

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R     +   V  +  +     ++ G   GA+ ++ KPF+   L   ++ L +
Sbjct: 75  DGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALLR 134

Query: 120 MQK 122
             +
Sbjct: 135 RHR 137


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +R +        G+ V  A +  +A    E+   P+ L++D  +  +  F
Sbjct: 12  RILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVER-FRPDLLLLDVMLPDLDGF 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                   +G    V +L    +    IAG  AG + ++ KPF+ E +   +R + + 
Sbjct: 71  EVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRR 128


>gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 57/128 (44%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    + ++ + +    G+ V  A+   +A E  +KE   + ++ D  M  + 
Sbjct: 1   MFQILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKE-YIDLIISDIMMPVMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +         G  + V  +  +  F+ M  G  +G++ +++KP N   +   +  L + 
Sbjct: 60  GYELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 119

Query: 121 QKSKDENQ 128
            +  +E++
Sbjct: 120 AQILNEHK 127


>gi|322421165|ref|YP_004200388.1| Fis family two component sigma54 specific transcriptional regulator
           [Geobacter sp. M18]
 gi|320127552|gb|ADW15112.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Geobacter sp. M18]
          Length = 468

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD   ++R+    +     + V  A +   A E   ++   + ++ D  M G+  F
Sbjct: 2   NILVVDDESVIREGLSRILEGDTYTVDAAKNGHAAIELL-QQKQFDLIITDLKMPGMNGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                   L  D  V  +      E  +   + G   +++KPF  E +   ++   + +K
Sbjct: 61  EVLNAVKILQPDTPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVQLALEQKK 120

Query: 123 SKDEN 127
           +  E+
Sbjct: 121 TSVED 125


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++    +           G+ V       +  E    E+  + +++D  + G  
Sbjct: 1   MQHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETAL-EINYDLILLDLMLPGLN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE    +R      +  +  L         + G  +GA+ +L KPF  E L   MR + 
Sbjct: 60  GLEVCRRLRA---TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIF 116

Query: 119 QMQKSKDENQFLDAI 133
           + ++   EN+ + ++
Sbjct: 117 RREEHI-ENKHVSSL 130


>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus
           HTCC2559]
          Length = 226

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 4/120 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLVD    + ++  +  +  G+ V  A+   EA +  +K   P  +++D  M  +   
Sbjct: 7   TILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKK-RKPQLIILDVMMPEMDGV 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++P   D  + +     +   M+AG  AGA+ ++ KP   + L   +  L + 
Sbjct: 66  EACEQIRKIPDL-DTIITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRR 124


>gi|325298170|ref|YP_004258087.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324317723|gb|ADY35614.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 236

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    +  + +      GF +  A +  E  E    +  P+ +V D  M  +  F 
Sbjct: 10  VLLVEDEETLALIIKDTLEGQGFAIRLAENGEEGIEKFFGQK-PDVVVADVMMPRMDGFE 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R         V +L        ++ G   G N +L KPF  + L   ++ L   
Sbjct: 69  MVRRIRRKDKQTPVLFLTARSATSDVVEGFELGGNDYLKKPFGMQELIVRIKALLGR 125


>gi|323483517|ref|ZP_08088904.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323690977|ref|ZP_08105263.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323403215|gb|EGA95526.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323504916|gb|EGB20692.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 237

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LLV+    +        +   + + E  S  EA      +  P+ +++D  +  +  
Sbjct: 5   TSILLVEDEKNICDFISTSLSAQDYKITETHSGKEALPIITSQC-PDLILLDLGLPDMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++Q+     + +  +      ++ +     GA+ +L KP     L   +R   +  
Sbjct: 64  M-EIIKQVRTWASIPIIVISARTQEQEKVKALDLGADDYLTKPIGTSELLARIRTALRHS 122

Query: 122 KSKDENQFL 130
              + +  L
Sbjct: 123 NRLNTDSPL 131


>gi|297623124|ref|YP_003704558.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164304|gb|ADI14015.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+   +VR++        GF V E  ++ EA          + +V+D  +      
Sbjct: 4   RVLVVEDEFVVRELIAFHLTQAGFTVEEVGTLEEAWRSLTG---VDAVVLDWMLPDGSGV 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R    G  + V  L         + G  AGA+ +L KPF+   L   +R L + 
Sbjct: 61  EWLRRLRATVRGERLPVLMLTARASERDKVFGLDAGADDYLAKPFSSAELTARLRALLRR 120

Query: 121 QKSKD 125
            + + 
Sbjct: 121 TEPQR 125


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++ +      G+    A +  E      +E   + L++D  +  +   
Sbjct: 5   RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEF-QEHDWDLLLLDVMLPELSGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               R         V  L         ++G   GAN ++ KPF  E L   +R   +
Sbjct: 64  EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLR 120


>gi|291458269|ref|ZP_06597659.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418802|gb|EFE92521.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+ D    + +         GF + +A    +A +  ++E + + L+ID  M G+ 
Sbjct: 1   MQTILVCDDDKQIVEAISIYLAGEGFRLLKAYDGYDALKIMDQEKV-DLLIIDVMMPGLD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++     + + +  L  + +    I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  GIRTTLKIREK-SSIPIIILSAKGEDNDKILGLNIGADDYITKPFNPLEMVARVKSQLRR 118


>gi|241763639|ref|ZP_04761689.1| response regulator receiver protein [Acidovorax delafieldii 2AN]
 gi|241367114|gb|EER61480.1| response regulator receiver protein [Acidovorax delafieldii 2AN]
          Length = 120

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L VD S  +RK+        G+ V EA    +A E  E     + ++ D++M    
Sbjct: 1   MQSILAVDDSPSMRKMVSFTLTGAGYHVVEAVDGQDALEKVETHD-IHLVLADQNMPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+ P    + +  L  E   +   AG  AGA  +L+KPF+   L   ++++ 
Sbjct: 60  GIGLTRKLREHPKFKTIPILILTTESSDQMKQAGRAAGATGWLVKPFDPNRLIEVIQKVI 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|216263814|ref|ZP_03435808.1| response regulatory protein [Borrelia afzelii ACA-1]
 gi|215979858|gb|EEC20680.1| response regulatory protein [Borrelia afzelii ACA-1]
          Length = 305

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+VD S     +  ++  D  + V  AT+  +A +  E++  P+ +++D  +     
Sbjct: 13  QKLLIVDDSPTNLDLLVNILQDA-YEVEVATNGLDALKQVERDS-PDLVLLDIGLPDING 70

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P   ++ V ++      +  + G   G   ++LKPFN   +   ++   +
Sbjct: 71  YEVCRRLKSDPDTKEIPVIFISSRSSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLE 130

Query: 120 MQKSKD 125
           +++ +D
Sbjct: 131 LKRLRD 136


>gi|171058281|ref|YP_001790630.1| response regulator receiver protein [Leptothrix cholodnii SP-6]
 gi|170775726|gb|ACB33865.1| response regulator receiver protein [Leptothrix cholodnii SP-6]
          Length = 120

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M S+L VD S  +R++        G+ V EA    +A E        + ++ D++M    
Sbjct: 1   MHSILAVDDSASMRQMVSFTLKSAGYNVVEAVDGQDAWEKA-GSRSFDLVLTDQNMPRLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +     +R+     +  +  L  E   +   AG  AGA  +L+KPF+   L   ++++ 
Sbjct: 60  GIGLTRKLRETSQFKNTPILILTTESSDQMKQAGRSAGATGWLVKPFDPTKLIEVIKKVV 119

Query: 119 Q 119
           +
Sbjct: 120 R 120


>gi|241204994|ref|YP_002976090.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858884|gb|ACS56551.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A    + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAV-DLIVLDVMMPGDDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D    I G   GA+ +L KPF    L   ++ + +  
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
 gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+   L   ++   +
Sbjct: 63  IELCRRIREK---HSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLR 119

Query: 120 MQKSKDEN 127
                ++N
Sbjct: 120 RYTYFNQN 127


>gi|170743829|ref|YP_001772484.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198103|gb|ACA20050.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +R +     +  GF V  A SV EA     +E +P  +++D  +    
Sbjct: 1   MTSVLVVEDDGDIRGMLARGLSAEGFSVNLAGSVDEALAAA-RERVPEAVLLDIMLPDGS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R    G    + +L  + +    + G   GA+ +++KPF  + L   +R   
Sbjct: 60  GHEVCRSLR--EGGYPGAILFLSAKDEVSDRVDGLAVGADDYIVKPFAFDELLARLRTHL 117

Query: 119 QMQKSKDENQFL 130
           Q +++  E + L
Sbjct: 118 QRRRAAGEPRTL 129


>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
 gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF V          E       P+  ++D  + G+  
Sbjct: 5   THVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRAN-RPDIALLDVMVPGLDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 64  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
 gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
 gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
 gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
 gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
 gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
 gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
           13177]
 gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
 gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
 gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
 gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
 gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
          Length = 229

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 2/123 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         R    + GF+              E E   + +++D  + G   +
Sbjct: 2   RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEY-DLIILDVMLPGHDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R     +   V +L    D    + G   GA+ +++KPF+   L   +R + +  +
Sbjct: 61  TVLERLRRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 123 SKD 125
           +++
Sbjct: 120 ARE 122


>gi|22298568|ref|NP_681815.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294748|dbj|BAC08577.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 125

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+++ S   + +   +    G     A +  +A E+      P+ +V+D  M G  
Sbjct: 1   MKQVLVIEDSRTEQTLIVSILEKLGHQAHVAQTAEKAMEWLATHQPPDLIVLDIVMPGAN 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    VR   L   V + +   +          R G N+++ KPF  E     + E  
Sbjct: 61  GFELCREVRANSLLKTVPIIFCSSKDQDFDRFWALRQGGNAYITKPFEPEDFIATINEYL 120


>gi|315127663|ref|YP_004069666.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016177|gb|ADT69515.1| two-component response regulator [Pseudoalteromonas sp. SM9913]
          Length = 299

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 4/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD   + R +     +D    V+  TS  +A  F  K    + +++D  M G+   
Sbjct: 6   KILIVDDDALNRIILEKTLSDE-HDVYLVTSGEDALAFV-KHTQVDLIILDIMMPGMNGY 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +++  +   + + ++      E    G   GA  ++ KPF+   ++  +R    +
Sbjct: 64  EVLVQLKENSISQAIPIIFISANNRHEDEAKGLELGAMDYIGKPFSAAIVKVRVRNQLLI 123

Query: 121 QKSKDENQFLDAI 133
           ++  D  + L +I
Sbjct: 124 KQKNDLLEMLASI 136


>gi|303246663|ref|ZP_07332941.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio fructosovorans JJ]
 gi|302492003|gb|EFL51881.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio fructosovorans JJ]
          Length = 459

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L VD    + +V        G+ V  A    EA E      +   L+ D  M G+  
Sbjct: 11  KTILAVDDDPHILEVLEVRLVSAGYDVVTAEDGTEALEILSSRPVR-LLISDIRMPGMDG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                  +  G  + + +L         +   + GA  +L KPF+ + L   + E+   
Sbjct: 70  MRLQEEMVRRGLSLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLSRVAEVFAR 128


>gi|271502507|ref|YP_003335533.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270346062|gb|ACZ78827.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 232

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LLVD    +  + R L    GF V  A    +A    +  +    L +    +  +
Sbjct: 1   MNKILLVDDDRELTSLLRELLEMEGFTVVVAHDGEQALSVLDDSVDLLLLDVMMPKKNGI 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  VRQ        V  L         + G   GA+ +L KPFN   L   +R + + 
Sbjct: 61  DTLKEVRQR---YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117

Query: 121 QKSKDENQFLDA 132
               D+ Q  +A
Sbjct: 118 SNWTDQQQAGEA 129


>gi|254880878|ref|ZP_05253588.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|319639886|ref|ZP_07994615.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|254833671|gb|EET13980.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|317388550|gb|EFV69400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 227

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+ +  LLV+    +  + +    +  F++  A    E      ++  P+ LV D  M  
Sbjct: 1   MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQK-PDVLVADVMMPR 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 60  MDGFEMVRRIRQSDKPTPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119

Query: 119 QMQKSKDE 126
                + E
Sbjct: 120 HKAFVEKE 127


>gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
 gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
          Length = 219

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 46/125 (36%), Gaps = 7/125 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+V+   ++  +        G+         EA    E +   + +++D  + G    
Sbjct: 2   RILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRY-DLILLDIMLPGADGY 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E + +++      +  V ++      E  + G + GA+ ++ KPF    L   +  + + 
Sbjct: 61  ELMEYIK----NYNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRR 116

Query: 121 QKSKD 125
                
Sbjct: 117 YGKSR 121


>gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +++VD    + ++      + GF V        A  + EKE + +  V+D  +  +  F
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETV-DVAVLDVMLPDIDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++ +       V  L  + +    I G   GA+ ++ KPFN   +   ++   +  +
Sbjct: 63  -QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQ 121

Query: 123 SKDE 126
             ++
Sbjct: 122 RYNQ 125


>gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 235

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 53/130 (40%), Gaps = 7/130 (5%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           + +L++D    + ++   +    G   V  A++  +      +E  P+ +++D  +    
Sbjct: 6   NKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQE-QPDLVILDIMLPDGE 64

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R     + V + +L  + +    I G   G + ++ KPF+ + + + ++   
Sbjct: 65  GYDICKQIR---DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQL 121

Query: 119 QMQKSKDENQ 128
           +       +Q
Sbjct: 122 RRSSYLQPSQ 131


>gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 743

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD           +  D    V    +  +A E  EK      +++D  M  +  
Sbjct: 623 KKVLIVDDDVRNTYALATVLEDREMEVVVGNNGNQALELLEKHSDIAIVLMDVMMPKMDG 682

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  +R  P    + +  L  +           AGAN +L KP + E L   MR    
Sbjct: 683 YEAIHQIRAQPRYRHLPIIALTAKAMKGDKAKCIEAGANDYLSKPVDTEKLISLMRVWLY 742

Query: 120 M 120
            
Sbjct: 743 R 743



 Score = 86.4 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 6/128 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            SLL+++       +   L  +  F    A       +  E +  P  +++D  +  +  
Sbjct: 355 KSLLIIEDDRQFSNLLMELAREKDFKCLLAEKGETGLQLAE-QYHPQAIILDVKLPDIDG 413

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  ++       + V+ +         I     GA  +L KP +   L  A +++ Q
Sbjct: 414 WTVIDKLQNNQQTQHIPVHVMSAYDPN---INALDKGAIGYLHKPISMPELGEAFKKIEQ 470

Query: 120 MQKSKDEN 127
           +   + +N
Sbjct: 471 LITKRVKN 478



 Score = 37.5 bits (87), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 8/91 (8%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            +LL++  +   ++    L  D         ++ E  +    +   + +++D  +E    
Sbjct: 477 KNLLVIADNEKHQQKILGLLEDDEVQTTFFVTIAEVLQQL-HQTQFDCIILDMDIEQGSG 535

Query: 62  --FIAHVRQMPLGTDVFVYY-----LLMEVD 85
              +  +++        V       L  E +
Sbjct: 536 VKLLGQMQKTNTLCQTPVIIYVERDLTAEEE 566


>gi|88860480|ref|ZP_01135118.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
 gi|88817678|gb|EAR27495.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
          Length = 228

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+   +++++ +      GF V    +  E     +  L P+ +++D  + G  
Sbjct: 1   MAHILLVEDDLVLQQLTKEYLIHNGFTVSVLGNGSEVLSSVQS-LQPDLMILDVMLPGKD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     VR       + +  L  + +    + G   GA+ +++KP     L   +  + 
Sbjct: 60  GFSVCREVR---DKHSLPILMLTAKGEDFDQVVGLEFGADDYVVKPVEPRVLVARINAIL 116

Query: 119 QMQKSKDENQFL 130
           +  K   +++ L
Sbjct: 117 RRHKPHRQHEEL 128


>gi|120556581|ref|YP_960932.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinobacter aquaeolei VT8]
 gi|120326430|gb|ABM20745.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Marinobacter aquaeolei VT8]
          Length = 328

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 4/134 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            +LLLVD      +V R++ +D  + +  A     A E    E  P+ +++D  M G+  
Sbjct: 6   KTLLLVDDEPANLQVLRNILSDQ-YRLLFAKDGERALELARSEK-PDLVLLDVMMPGMSG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++       + V ++    D +    G   GA  +L KP N   +R  ++    
Sbjct: 64  YEVCNALKAGQDTRAIPVIFVTALSDADDEARGFELGAVDYLTKPVNAAIVRARVKNHLS 123

Query: 120 MQKSKDENQFLDAI 133
           + +  +  +   A+
Sbjct: 124 LVRMDELIETRLAV 137


>gi|311896069|dbj|BAJ28477.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 226

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + +          + V  A     A E       P+ +V+D  +  + 
Sbjct: 1   MTRVLVVDDEPQIVRALVINLKARKYEVDSAHDGASALELAAA-RHPDVVVLDLGLPDMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLR 111
                +R +   T V +  L      ++ +    AGA+ ++ KPF  + L 
Sbjct: 60  GV-EVIRGLRGWTRVPIIVLSARHASDEKVEALDAGADDYVTKPFGMDELL 109


>gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 917

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD         +      G  +  A +  E  E  +     + +++D  M  +  
Sbjct: 797 KRVLIVDDDQRNIFALKTALAKQGMTIMTAHNGIECLEMMKNSEPFDLILMDIMMPQMDG 856

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              +  +R      D+ +  L  +           AGA+ ++ KP +   L   MR   
Sbjct: 857 YEAMQKIRGELKLVDLPIIALTAKAMKNDREKCLEAGASDYISKPLDLNQLFSVMRVWL 915


>gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 236

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+       + G+ V +A++  E     E     +  V+D  M  +   
Sbjct: 4   TILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANE-IHLAVVDIMMPVMDGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++      D  V +L  + +    I G   G + ++ KPF    L   +    +   
Sbjct: 63  TMVLKLRENY-DFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRRYN 121

Query: 123 S 123
            
Sbjct: 122 Q 122


>gi|160890309|ref|ZP_02071312.1| hypothetical protein BACUNI_02750 [Bacteroides uniformis ATCC 8492]
 gi|156860041|gb|EDO53472.1| hypothetical protein BACUNI_02750 [Bacteroides uniformis ATCC 8492]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++LLV+    +  + +       F++  A    E       +L P+ LV D  M  +  F
Sbjct: 5   TVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFF-DLRPDVLVADVMMPRMDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 64  EMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKALV 119


>gi|148657869|ref|YP_001278074.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148569979|gb|ABQ92124.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 391

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    + ++ R      G+ V  A S  EA E    E   + + +D S+ G+  
Sbjct: 16  RRILVVDDDPDINRLLRARLTARGYEVSTAASGEEALELL-SETPADIVFLDISLPGISG 74

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                     G D  V         +  +   R GAN +L KPF  +  R  +    Q  
Sbjct: 75  LHTLEEVRRRGLDTAVIMTTAFGSEQIAVEALRQGANDYLRKPFESDEFRRVLERTVQRL 134

Query: 122 KSKDENQFL 130
           + + +N+ L
Sbjct: 135 ELERQNRVL 143


>gi|29348543|ref|NP_812046.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340448|gb|AAO78240.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1271

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLLV+ +  +            F V  A +  EA E        + ++ D  M  +   
Sbjct: 1002 TLLLVEDNESMLTFILERLQ-ENFTVETAMNGVEALEILRSSH-IDLIISDIMMPVMDGY 1059

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + + +L  + D +  I G + GA +++ KPF+   L+  +  L   
Sbjct: 1060 QLCKEVKSDMELSHIPIIFLTAKNDIDSKINGLKYGAEAYVEKPFSFNYLKEQVLSLLDN 1119

Query: 121  QKSKDE 126
            ++ + E
Sbjct: 1120 RRRERE 1125


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|303325765|ref|ZP_07356208.1| transcriptional regulatory protein ZraR [Desulfovibrio sp.
           3_1_syn3]
 gi|302863681|gb|EFL86612.1| transcriptional regulatory protein ZraR [Desulfovibrio sp.
           3_1_syn3]
          Length = 466

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M ++L+ D     R+V R L  ++G+ V EA     A   C K+   + +++D  M    
Sbjct: 1   MLTILVADDDATHREVLRTLLEEWGYAVREAVDGEHAVALCRKQP-FDLVLMDVRMPKKS 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  ++       V V  +    +    +   ++GA  +L KP + E L+  +R + 
Sbjct: 60  GLEALKEIKVH--NPAVPVLIMTAFSEVAAAVEAIKSGAYDYLTKPLDFEKLKVVLRNVF 117

Query: 119 QMQKSKDENQFLD 131
                  EN  L 
Sbjct: 118 AHVGLIRENATLS 130


>gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1897

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LLVD           L    G  V  AT+  EA E      + + +++D  M  +  
Sbjct: 1778 RKVLLVDDDARNIFALSSLLERRGMNVLTATTGLEAIETLNSTDV-SIVLMDIMMPEMDG 1836

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               +  +R       + +  L  +           AGA+ +L KP + E L  A+R    
Sbjct: 1837 YQTMQRIRGSDKHQRLPIIALTAKAMKGDREKCLEAGASDYLAKPVDTEQLLSALRMWLH 1896

Query: 120  M 120
             
Sbjct: 1897 R 1897



 Score = 84.5 bits (209), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE-- 61
            LL+V+      K+        GF         +A      +  P  + +D  +  +L   
Sbjct: 1512 LLIVEDDPRYAKILIDAARKTGFKGIVCHRGVDALSLA-TDYNPTAISLDIHLPDILGWS 1570

Query: 62   FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             ++ ++  PL   + V  +      +    G   GA S+L KP   + L+ A+R + +
Sbjct: 1571 VLSQLKHNPLTRHIPVQVVT---LDDDRHHGLARGAFSYLTKPLETDALKSALRRIAE 1625



 Score = 79.5 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 6/95 (6%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+VD     R     L  +    +F A    +A +   KE   + +V+D  +  +  
Sbjct: 1632 KRLLIVDDDSAERMSIAELLKNDDVEIFTAADGADALKKL-KENPIDCVVLDLKLPDMSG 1690

Query: 62   F--IAHVRQMPLGTDVFVYYLLME---VDFEKMIA 91
            F  +  +   P   D+ V          + +  I 
Sbjct: 1691 FEILEQMCGSPAMRDIPVVVFTGRELSNEEDHKIR 1725


>gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 917

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD         +      G  +  A +  E  E  +     + +++D  M  +  
Sbjct: 797 KRVLIVDDDQRNIFALKTALAKQGMTIMTAHNGIECLEMMKNSEPFDLILMDIMMPQMDG 856

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              +  +R      D+ +  L  +           AGA+ ++ KP +   L   MR   
Sbjct: 857 YEAMQKIRGELKLVDLPIIALTAKAMKNDREKCLEAGASDYISKPLDLNQLFSVMRVWL 915


>gi|261340522|ref|ZP_05968380.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
 gi|288317617|gb|EFC56555.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
          Length = 240

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++        G+             +  +   P+ +++D  + G    
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAAGYAPTLINHGDHVLPYVRQTP-PDLILLDLMLPGTDGL 70

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R++   +DV +  +  +++    + G   GA+ ++ KP++   +   ++ + +  +
Sbjct: 71  TLC-REIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCR 129

Query: 123 SKDENQFLDA 132
            + E Q LDA
Sbjct: 130 PQRELQVLDA 139


>gi|224532135|ref|ZP_03672767.1| response regulatory protein [Borrelia valaisiana VS116]
 gi|224511600|gb|EEF82006.1| response regulatory protein [Borrelia valaisiana VS116]
          Length = 305

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+VD S     +  ++  D  + V  AT+  +A    EK+  P+ +++D  +     
Sbjct: 13  QKLLIVDDSPTNLDLLVNILQDS-YEVEVATNGLDALSQVEKDS-PDLILLDIGLPDING 70

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P   ++ + ++      +  + G   G   ++LKPFN   +   ++   +
Sbjct: 71  YEVCRRLKSDPDTKEIPIIFISSRSSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLE 130

Query: 120 MQKSKD 125
           +++ +D
Sbjct: 131 LKRLRD 136


>gi|206581136|ref|YP_002238903.1| response regulator [Klebsiella pneumoniae 342]
 gi|206570194|gb|ACI11970.1| response regulator [Klebsiella pneumoniae 342]
          Length = 404

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+ S + R++   +   +G++V EA +   A    E + + + ++ D  M  +    
Sbjct: 6   VLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPV-SLVISDWEMPEMNGLT 64

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR+   G  V++  L    D   +  G  AGA+ FL KP  +  LR  +    ++ 
Sbjct: 65  LCREVRRRQFGHYVYLILLTAREDPGDLTQGFAAGADDFLSKPVEQSELRARLHAGARIL 124

Query: 122 KSKDEN-----QFLDAI 133
             + +      +  +A+
Sbjct: 125 SLEADLAARNTRLSEAL 141


>gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 224

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+       +   +    G+ V  A +   A +  + E   + ++ D  M    
Sbjct: 1   MVKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSE-QFDLVLSDIMMPQVD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +F   +R+      + + ++    D      G  +G + +++KP N   L   ++ L 
Sbjct: 60  GYQFAQELRRTD--PSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALL 117

Query: 119 QMQKSKDEN 127
           +  K   +N
Sbjct: 118 RRAKITADN 126


>gi|62179292|ref|YP_215709.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|168230591|ref|ZP_02655649.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168238842|ref|ZP_02663900.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168264316|ref|ZP_02686289.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194469270|ref|ZP_03075254.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734914|ref|YP_002113810.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248644|ref|YP_002145675.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|204929905|ref|ZP_03220926.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|224582530|ref|YP_002636328.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62126925|gb|AAX64628.1| response regulator in two-component regulatory system with KdpD,
           regulates kdp operon encoding a high-affinity K
           translocating ATPase (OmpR family) [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194455634|gb|EDX44473.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710416|gb|ACF89637.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197212347|gb|ACH49744.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197288335|gb|EDY27716.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|204320899|gb|EDZ06100.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205334810|gb|EDZ21574.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205347195|gb|EDZ33826.1| KDP operon transcriptional regulatory protein KdpE [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224467057|gb|ACN44887.1| KDP operon transcriptional regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322615850|gb|EFY12768.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621246|gb|EFY18103.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623666|gb|EFY20504.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628938|gb|EFY25718.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634918|gb|EFY31648.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636554|gb|EFY33258.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641807|gb|EFY38439.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647795|gb|EFY44275.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651875|gb|EFY48244.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652628|gb|EFY48977.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658436|gb|EFY54699.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664961|gb|EFY61152.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668369|gb|EFY64525.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670543|gb|EFY66676.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675283|gb|EFY71359.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679709|gb|EFY75750.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684815|gb|EFY80814.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322713759|gb|EFZ05330.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323193114|gb|EFZ78334.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200584|gb|EFZ85659.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202256|gb|EFZ87304.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205477|gb|EFZ90443.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213484|gb|EFZ98277.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215318|gb|EGA00063.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220231|gb|EGA04687.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224249|gb|EGA08539.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231031|gb|EGA15147.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234136|gb|EGA18225.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238169|gb|EGA22227.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243604|gb|EGA27622.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247372|gb|EGA31331.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251360|gb|EGA35232.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258501|gb|EGA42173.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263124|gb|EGA46664.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264727|gb|EGA48229.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272226|gb|EGA55638.1| DNA-binding transcriptional activator KdpE [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+V+    +R+  R      G  V+EA ++            P+ +++D  +    
Sbjct: 1   MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGL-LEAATRKPDLIILDLGLPDGD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  +R +   + + V  L    +    IA   AGA+ +L KPF    L+  +R   + 
Sbjct: 60  G-IDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118

Query: 121 QKS 123
             +
Sbjct: 119 HAA 121


>gi|77360093|ref|YP_339668.1| response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875004|emb|CAI86225.1| Response regulator CheB (receptor modification enzyme,
           protein-glutamate methylesterase) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 331

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD      KV R +  +  + +  A S   A    EKE LP  +++D  M  +  F
Sbjct: 9   RILIVDDEPANLKVMREVLGNQ-YRMSFAKSGAAAIALLEKE-LPKLILLDIMMPDMNGF 66

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                V+  P  + + + ++    D      G   GA  ++ KP +   +R  ++    +
Sbjct: 67  EVCQIVKANPATSHIPIIFVTALSDESDEFKGFELGAVDYITKPISPAIVRARVKTHLSL 126

Query: 121 QKSKDENQ 128
            +++   Q
Sbjct: 127 VQAEQLKQ 134


>gi|305664862|ref|YP_003861149.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Maribacter sp. HTCC2170]
 gi|88707984|gb|EAR00223.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Maribacter sp. HTCC2170]
          Length = 387

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+V+    +R+V   + ++    + V EA       E  +     + ++ D  M  
Sbjct: 1   MSKILVVEDESAIRRVLVKILSEESDSYQVEEAEDGLRGIEAIKNNDY-DLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  ++    +    D +  +   R GA  ++ KP +   L   +R   
Sbjct: 60  MDGVEVLEAASKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNAL 119

Query: 119 QMQKSKDENQFLD 131
             ++   EN+ L 
Sbjct: 120 DRKELVVENKILK 132


>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 225

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + +    +     + V          +     +  + +++D  +  +   
Sbjct: 2   RILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIY-DLIILDIMLPKMNGI 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             + H+R+  +     V  L  + +    + G  +GA+ +L KPF  E L   +R L + 
Sbjct: 61  SILKHIRKQEI--ATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRR 118

Query: 121 Q 121
           +
Sbjct: 119 K 119


>gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 226

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    + ++   +    GF     T   EA    E+E  P+ +++D  + G+
Sbjct: 1   MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFERE-QPDLILLDLMLPGM 59

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
                   +R+      V +  L  + D   ++ G  +GA+ ++ KPF  + 
Sbjct: 60  NGIDICKTIRRSSP---VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 108


>gi|218246316|ref|YP_002371687.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 8801]
 gi|257059364|ref|YP_003137252.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 8802]
 gi|218166794|gb|ACK65531.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 8801]
 gi|256589530|gb|ACV00417.1| response regulator receiver modulated GAF sensor protein
           [Cyanothece sp. PCC 8802]
          Length = 311

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 3/130 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R + +      G+ V +A +  E       +  P+ +++D  M  +  F 
Sbjct: 13  VLVVDDDRAMRGLLKVAIESQGYQVIDAKNGEECLNKY-GQFQPDMVLLDAIMPDMDGFT 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +P    + +  +    D E +      GA  ++ KP     L   +  L    
Sbjct: 72  CCQQLRSLPDTHYLPILMITALDDQESIERAFAVGATDYITKPIYWTVLSQRVNYLLSTS 131

Query: 122 KSKDENQFLD 131
           ++  +   L 
Sbjct: 132 QALKQLDHLK 141


>gi|15639510|ref|NP_218960.1| response regulatory protein (atoC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025749|ref|YP_001933521.1| response regulatory protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322811|gb|AAC65507.1| response regulatory protein (atoC) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018324|gb|ACD70942.1| response regulatory protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059896|gb|ADD72631.1| acetoacetate metabolism regulatory protein AtoC [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 458

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M  S+L++D    +R+  +    D G+ VF A       E   K    + ++ D  M  +
Sbjct: 1   MKFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGD-IDLIITDLKMPRM 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +       +  D+ +  L      E  +     GA  FL KP +   L   +R   Q
Sbjct: 60  SGELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQ 119

Query: 120 MQKSKDENQFL 130
            ++   +++ L
Sbjct: 120 NRELIVQHREL 130


>gi|84623104|ref|YP_450476.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84367044|dbj|BAE68202.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 229

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +LLV+       +        GF V  A     A +   ++  P+ +++D  +     
Sbjct: 4   KKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQ-LHRQWAPDLVLLDVMLPKLSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +E ++ +R     +D  V  +    D  + +   R GA+ +++KP++ + +   +  + +
Sbjct: 63  IEVLSAIR---RASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 1/125 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+++    + K           +V  A    E  E+ +     + +++D  +  +   
Sbjct: 2   RILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNY-DLILLDLMLPRLDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               R      + F+  L         I G  AGA+ +L+KPF+ E L   +R L +  +
Sbjct: 61  TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120

Query: 123 SKDEN 127
              + 
Sbjct: 121 ETRQL 125


>gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 233

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    + KV +         +  A++  EA      + + + +++D S+     F
Sbjct: 5   KVLLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQ-IFDLVILDVSLGDTDGF 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +    G DV + +L         I     GA+ ++ KPF+   L   ++   +   
Sbjct: 64  QVLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGD 123

Query: 123 SKDENQ 128
              E+Q
Sbjct: 124 KIKEHQ 129


>gi|307331825|ref|ZP_07610925.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306882522|gb|EFN13608.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1484

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +L+VD          H+    G  V  A +  E  E   +    + +++D  M  +  
Sbjct: 1278 RRILIVDDDIRNVFALTHVLGRVGMTVKYAENGREGLEVLHRNPDVSLVLMDVMMPEMDG 1337

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               I  +R  P   D+ +  L  +V          +GAN ++ KP + + L  A+ EL 
Sbjct: 1338 YETIRAIRSTPRLADMPILALTAKVMPGDREKAIDSGANGYVPKPVDVDRLMSAIIELL 1396


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R + +      G+ V EA     A +    E   + +++D  +    
Sbjct: 1   MKKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFY-EKPFDLVILDIMLPKKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + + +R++   + V V  L    D E  + G   G + ++ KPFN + L   ++ L +
Sbjct: 60  GW-SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIK 117


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD    +  V        GF+   A     A E   +   P+ +V+D  + G+  
Sbjct: 9   RRVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVER-TRSWEPDLIVLDRMLPGIDG 67

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R++    D  +  L      +  IAG   GA+ ++ KPF+   L   ++ + + 
Sbjct: 68  LEVT-RRVRAICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRR 125


>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
 gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
          Length = 242

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 14  NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQLAILDIMMPQMDG 72

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 73  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 129

Query: 120 M 120
            
Sbjct: 130 R 130


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-ELLPNYLVIDESME--G 58
           +++LLV+    +            + +  AT   +A +  E      N +++D  +    
Sbjct: 3   NTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLD 62

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            LE +  +RQ     D+ +  +         +AG  AGA+ ++ KPF  E L   +R + 
Sbjct: 63  GLEVLRRIRQND---DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVML 119

Query: 119 QMQKSKD 125
           +  +++ 
Sbjct: 120 RHSQNQA 126


>gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 254

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAH 65
           +V+    +           G+ V  A       E CE+ + P+ +V+D  + G       
Sbjct: 22  VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCER-VTPDVVVLDVMLPGFDGLEVC 80

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125
            R       V V  L    D    + G   GA+ ++ KPF+   L   +  L +  +   
Sbjct: 81  RRVQAARP-VPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERAR 139


>gi|120435775|ref|YP_861461.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577925|emb|CAL66394.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 347

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  LLL++    VR+    L     + V  A++     E  E+  LP+ +V D  M    
Sbjct: 1   MKKLLLIEDDVTVRENTAELLELSNYDVITASNGMLGIEKAEQN-LPDIIVCDIMMPEID 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + + P   ++   +L  + + + +  G   GA+ +L KPF  E L  A+    
Sbjct: 60  GYGVLEALGKNPNTLNIPFIFLSAKTEHKDIRKGMDLGADDYLTKPFEEEELVSAIESRL 119

Query: 119 QMQKSKDENQ 128
                 + N+
Sbjct: 120 AKVAILNANR 129


>gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 222

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+ +  +           G+ V       +A    + E   + +V+D  + G+   
Sbjct: 2   RLLLVEDNVPLADELTATLQRQGYAVDWLADGRDAVYQGQSEPY-DLIVLDLGLPGLPGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +         V  L     + + I G +AGA+ +L KPF+ E L+  ++ L +  K
Sbjct: 61  EVLAQWRAANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAK 120

Query: 123 SKDENQFLDA 132
                  L+A
Sbjct: 121 GLANQPRLEA 130


>gi|89902538|ref|YP_525009.1| response regulator receiver domain-containing protein [Rhodoferax
           ferrireducens T118]
 gi|89347275|gb|ABD71478.1| response regulator receiver domain protein [Rhodoferax
           ferrireducens T118]
          Length = 124

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+ D    +     +L    G+ V  A    EA E   +E  P+ +++D  M     
Sbjct: 3   QKILVADDEPNIVISLEYLLKREGYTVLIARDGQEALEAIAREK-PDLVLLDVMMPKKTG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R       + +  L  +     +  G   GA++++ KPF+   L   + EL +
Sbjct: 62  FEVCQALRASDDLQAIKILMLTAKGRDTDVAKGLALGADAYITKPFSTRELVLKVAELLR 121


>gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 234

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL +    + +V        G+ V  A    EA +   KE   + +++D  M    
Sbjct: 1   MMKILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLA-KENAYDLMILDIMMPVKT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E +  +RQ    T   V  L    + +  + G  AGA+ +L KPF+ + L   +R + 
Sbjct: 60  GIEALKEIRQTGNTTH--VIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMS 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5]
 gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5]
          Length = 238

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    +  +      +  F +F+     EA E   +E  P+  ++D  M  +
Sbjct: 8   MREKILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREE-PDLALMDVMMPEI 66

Query: 60  LEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             F     +R+        V  L  + +    I G   GA+ ++ KPF    +   ++  
Sbjct: 67  DGFTLCRQIRERYHF---PVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQ 123

Query: 118 PQMQKSKDE 126
            +  K  ++
Sbjct: 124 LRRYKRYNQ 132


>gi|304440456|ref|ZP_07400345.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371208|gb|EFM24825.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 2/120 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+ +    +R +         + VF A    +  E  ++E   + +++D  M  V   
Sbjct: 5   NILVAEDDKEIRDLIGLYLERENYRVFYAEDGEKCLEIFDREH-IDLIIMDLMMPNVSGE 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A +R     + V +  L  +    + I G   GA+ ++ KPFN   L   +    +  K
Sbjct: 64  DAILRIRE-NSYVPIIILSAKSQEFEKIIGLNIGADDYMTKPFNPSELMARVASQLRRTK 122


>gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
 gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
          Length = 227

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+++    ++++        G+MV  A    E  E   K    + +++D  +    
Sbjct: 4   MNKILIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSY-DVVLLDLMLPKKS 62

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E     R++   TD  +     + +    +     GAN ++ KPF  E L   +R + 
Sbjct: 63  GKELCQEFRKL---TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVT 119

Query: 119 QMQKSKDENQ 128
           + +++  + Q
Sbjct: 120 RNRENSSDKQ 129


>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 229

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +  + +      GF V          +    E   +  ++D  + G+ 
Sbjct: 1   MSKVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSED-FDMYILDLMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  +  + D    I G   GA+ ++ KPF+   L   ++   
Sbjct: 60  GFEICKQIREE---KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHL 116

Query: 119 QMQK 122
              +
Sbjct: 117 ARYE 120


>gi|251790803|ref|YP_003005524.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539424|gb|ACT08045.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 231

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       V         F V  A       E   +   P  +++D  + G+  
Sbjct: 4   KRILIIEDDADAASVLEAYLKRDNFQVLLARDGVSGLEMALRAK-PALILLDVMLPGMNG 62

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +  +   +DV V  +    D    I   R GA+ ++ KP++   +   ++ + + 
Sbjct: 63  -TEVLAALRRKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRR 120


>gi|227551073|ref|ZP_03981122.1| possible response regulator [Enterococcus faecium TX1330]
 gi|257896695|ref|ZP_05676348.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227179771|gb|EEI60743.1| possible response regulator [Enterococcus faecium TX1330]
 gi|257833260|gb|EEV59681.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 147

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +L+V+    ++ + R +    GF V  A +  +A +  E       ++ D  M  + 
Sbjct: 18  MNRILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEA-TRIELIITDIMMPKMD 76

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
            +           D  V  +  + DFE    G + GA+ ++ KP +   +   +  
Sbjct: 77  GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEA 132


>gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 240

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLP-NYLVIDESMEGVLE 61
           ++LL D    +  +        GF V  AT    A +   +   P +  ++D +M G+  
Sbjct: 7   TVLLADDEVNIVTLLEMELQAEGFTVVTATDGISALKKLREPDTPVDLALLDWNMAGITG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R       + V  +    + +  IA    GA+ F+ KPFN   +   ++ L + 
Sbjct: 67  LDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRR 125


>gi|120600124|ref|YP_964698.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291948|ref|YP_001182372.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560217|gb|ABM26144.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563638|gb|ABP74573.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319425239|gb|ADV53313.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GV 59
             +L+V+    + +       D G+ V  A+    A E    E  P+ +++D  M     
Sbjct: 5   KHILVVEDDTSLAEWISDYLLDHGYEVTVASQGDFALEMIADET-PDLVLLDVMMPVKNG 63

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +     R    G    + ++   V+    I G  AGA+ +L KP   + L   ++ L +
Sbjct: 64  FDVCKEARAFYAG---PILFMTACVEDGDEIRGLDAGADDYLTKPIRPQVLLARIKALLR 120

Query: 120 MQKSKDENQFL 130
               +++   L
Sbjct: 121 RVGDEEQKLQL 131


>gi|328880420|emb|CCA53659.1| putative two-component system sensory histidine kinase [Streptomyces
            venezuelae ATCC 10712]
          Length = 1337

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 2/119 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             ++L+VD           +    G  V  A +  +  E        + +++D  M  +  
Sbjct: 1216 RTVLVVDDDARNLYALSGILELHGVTVLHAENGRKGIETLLANPAVSLVLMDVMMPEMDG 1275

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                A +R++    D+ V  +  +           +GA+ ++ KP + + L   +    
Sbjct: 1276 YTATARIRELSQYADLPVIAVTAKAMPGDREKSLASGASDYVTKPVDADELIACIGRWL 1334


>gi|317499180|ref|ZP_07957456.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291560744|emb|CBL39544.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893539|gb|EFV15745.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +       + +  A    EA +   ++ +   ++ D  M  +   
Sbjct: 5   KILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLII-DVMMPKMDGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G   GA+ ++ KPF  + L   ++   + 
Sbjct: 64  SATMKIRES-KNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRR 120


>gi|158339429|ref|YP_001520606.1| signal transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309670|gb|ABW31287.1| signal transduction histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 421

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 7/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L++D +     V       FG  V  + S     +       PN +++D  M      
Sbjct: 11  TVLIIDDNPNNLGVALSALEGFGATVLVSRSGESGLQRAAFAK-PNIILLDVLMPDIDGY 69

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    ++  P    + V ++         + G   GA  ++ KP   + L   ++   Q+
Sbjct: 70  ETCRRLKANPQTEPIPVIFMTALTSNNDKVKGLEVGAVDYITKPIYVDELLARVKVHLQI 129

Query: 121 ----QKSKDENQFLDA 132
               Q  + +N  L A
Sbjct: 130 YALNQTLQAQNHQLKA 145


>gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 249

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + + +    +  + R    + G+ V  +T+   A +          L++D  M G+ 
Sbjct: 24  MFKIGIAEDDVKIAGLIRSGLEEQGYDVTVSTNGQVALQTFLDND-FQLLILDVMMPGMS 82

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +RQ     ++ +  L      +  + G  +GA+ +LLKPF+ + L   +  L 
Sbjct: 83  GVEICRSLRQQQ--REMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALL 140

Query: 119 QMQKSKD 125
           +  K + 
Sbjct: 141 RRHKKEA 147


>gi|149185885|ref|ZP_01864200.1| two-component response regulator [Erythrobacter sp. SD-21]
 gi|148830446|gb|EDL48882.1| two-component response regulator [Erythrobacter sp. SD-21]
          Length = 250

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + LVD    +           GF     +    A         P+  + D  M  +    
Sbjct: 20  IALVDDDRNILTTVSIALQAEGFATRVYSDGEAALSALLGNP-PDLAIFDIKMPKMDGM- 77

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
             +R++   + + V +L  + D +   AG + GA+ ++ KPF+   L   +R + +   +
Sbjct: 78  ELLRRLRDHSPLPVIFLTSKDDEQDEEAGLQMGADDYIAKPFSLRLLLARIRAILRRSDA 137

Query: 124 KD 125
           + 
Sbjct: 138 RR 139


>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +R +      + G+ V +A    E     E+  + + +V+D  M  V   
Sbjct: 5   TILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEV-HLVVLDIMMPKVDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              ++      ++ +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120


>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+VD    + ++   +    G          +A         P+ +++D  + G 
Sbjct: 1   MRGRVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRA-TRPDLVLLDLMLPGT 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  + D   ++ G  AGA+ +++KPF  + L   +R  
Sbjct: 60  DGMEVCRQIRAESG---VPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRAR 116

Query: 118 PQ 119
            +
Sbjct: 117 LR 118


>gi|325282997|ref|YP_004255538.1| response regulator receiver and SARP domain-containing protein
           [Deinococcus proteolyticus MRP]
 gi|324314806|gb|ADY25921.1| response regulator receiver and SARP domain protein [Deinococcus
           proteolyticus MRP]
          Length = 345

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 3/130 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV- 59
           M  +L+VD    + K+   +    G  V  A+   EA +   K  +P+ ++ D  M  + 
Sbjct: 1   MPKILVVDDDAAILKLISVILTRSGHDVRTASHPVEALDLM-KVFVPDLVISDVVMPYMT 59

Query: 60  -LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+F+  +R+      V    L    +   +  G   GA+ +L KPF    L  A+    
Sbjct: 60  GLDFLEKMREDEKLARVPFMLLSSHAERADVRRGMNLGADDYLPKPFTPADLNGAVEARL 119

Query: 119 QMQKSKDENQ 128
           +      + +
Sbjct: 120 RRAGMTLQGE 129


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 4/118 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
             +LL + + + +KV  HL    G+    A +  EA E   K+   + +++D  M  +   
Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRKQ-FYDVVLMDVQMPQMDGL 1592

Query: 63   IAHVRQMPLGT---DVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             A  R            +  +              AG N ++ KP  RE L  A+ + 
Sbjct: 1593 EATRRICQEWPEQLRPRIIAMTANAMQGDREKCLAAGMNDYITKPVRREELANALSKC 1650



 Score = 65.6 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 20/133 (15%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              LL+V++    R+V   L   +G +   A +  EA +  +   + +  ++  ++  +  
Sbjct: 1333 KRLLIVENHDTNRQVLIKLSQYWGMIPIAAATGAEAMQLLQHNPMVDLAILAMNLADMDG 1392

Query: 62   --FIAHVRQMPLG----------------TDVFVYYLL--MEVDFEKMIAGARAGANSFL 101
                  +R   LG                  + +       + +  K +  A      FL
Sbjct: 1393 IALANKIRNFELGYSHLVNGSEPARTEPERRLPMVMFTYLGKAEVWKKLENAEINFAGFL 1452

Query: 102  LKPFNRETLRFAM 114
             KP  +      +
Sbjct: 1453 TKPLKQSQFYNVL 1465


>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+++    ++ + R    D G+ V+ A    E  E   +   P+ +++D  +  +  
Sbjct: 3   KTILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRR-CDPDLVLLDLMLPKIDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+        +  L    D    + G    A+ +++KPF+   +   +  + +
Sbjct: 62  FAVCEILRKESR---TPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLR 118

Query: 120 MQKSKDENQ 128
             +   E +
Sbjct: 119 RTEQGTEEE 127


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61
             +L+V+ +   +++ R L  D G  +  A    EA +         + +++D  M  +  
Sbjct: 1164 RILVVEDNLNNQQIARELLEDEGASITLAAQGQEAVDRLRASPQGFDLVLMDLQMPVMDG 1223

Query: 62   F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R+      + +  +              AG N  + KPFN   L  A+++  
Sbjct: 1224 INATQYIRRHLGLRSLPIIAMTANAMASDRQECLAAGMNDHIGKPFNLRELIHAIQKHL 1282



 Score = 85.2 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 9/133 (6%)

Query: 4    LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC----EKELLPNYLVIDESMEGV 59
            +L+VD +     + + +    G+ V  A S  +A              + + +D  M G+
Sbjct: 1012 VLMVDDNPTACTLLQRMGTTLGWEVDTAGSGEQALARIAEQQRAGTHYDVMFVDWLMPGL 1071

Query: 60   LEFIAHVRQMPLGTDVF---VYYLLMEVDFEKMIA-GARAGA-NSFLLKPFNRETLRFAM 114
              +    R      D     +  +        +       G  + FL+KP   + L   +
Sbjct: 1072 DGWQTIQRLHQQIPDTSMPLLVMVTANDRDCLLQRSSEEQGVLDGFLVKPVTPQILLETV 1131

Query: 115  RELPQMQKSKDEN 127
                  ++   + 
Sbjct: 1132 LSALHARQESSQQ 1144


>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+++    + +         G+      +     +        + +++D  +  + 
Sbjct: 1   MSSVLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALAND-FDLILLDLMLPELS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  +         ++G   GA+ +++KPF  E L   +R L + 
Sbjct: 60  GLEVARRLREE-KNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRR 118

Query: 121 QKSKDEN 127
              + E 
Sbjct: 119 IDIETEE 125


>gi|218513473|ref|ZP_03510313.1| two-component response regulator protein [Rhizobium etli 8C-3]
          Length = 241

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R++    F D G+ V  A    E R    ++   + +++D  + G  + +
Sbjct: 10  LLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQN-FDAVLLDLVLPGGTDGL 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R++   +DV +  L    D    I G   GA+ ++ KPF+   +   ++ + + ++ 
Sbjct: 69  DLAREIRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRRRQP 128

Query: 124 KDEN 127
              N
Sbjct: 129 PARN 132


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+++    + ++ R      GF    AT   E       E   + +++D  + G   
Sbjct: 3   KKILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEK-FDLILLDLMLPGIDG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R     T+V +  +   ++    I G   GA+ ++ KPF+   L   ++    
Sbjct: 62  YEICRKIR---GKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLA 118

Query: 120 MQK 122
             +
Sbjct: 119 QYE 121


>gi|197122275|ref|YP_002134226.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196172124|gb|ACG73097.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter sp. K]
          Length = 464

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   IVR+         G+ V  A     A E  + E     +V D  M G+  
Sbjct: 6   TRILVVDDEEIVRESLGGWLEKDGYSVHVAADGFAAVEKLKAERWSILIV-DLKMPGMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    L  ++ V  +      +  +A  + GA  +L+KPF+ E L   M+++   Q
Sbjct: 65  LQVLEEAKKLQPELAVVIMTAYATVDTAVAAMKLGAYDYLVKPFDPEELSLMMQKIVSQQ 124

Query: 122 KSKDENQFL 130
               EN  L
Sbjct: 125 TLVRENAVL 133


>gi|154495761|ref|ZP_02034457.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
           29799]
 gi|150274959|gb|EDN02007.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
           29799]
          Length = 248

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+V+    +           G     A    +   F  +    + +++D  + G+    
Sbjct: 26  ILMVEDDADLCGAVEIHLKKAGHTADMAYDGEDGLHFALQNAY-DLILLDRMLPGMDGLE 84

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R    G    V  +         + G  AGA+ +L KPF  E L   +R L + 
Sbjct: 85  LVSRLRKAGITAPVLMVTALDGVSDRVDGLDAGADDYLTKPFAAEELLARIRALSRR 141


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL+V+ +  + +  + +  D  F V  A    EA  +  ++ + + +++D  +  + 
Sbjct: 1   MK-LLIVEDNVSLLESMKRMLEDE-FEVETARDGEEAL-YLAQQNIFDIILLDVMLPEMD 57

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  +  +R+  +  +  V ++  +   E  + G   G + +++KPF    L+  +R   
Sbjct: 58  GFSILKTLRKDRV--ETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASL 115

Query: 119 QMQKS 123
           +   +
Sbjct: 116 RRSGN 120


>gi|114328564|ref|YP_745721.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316738|gb|ABI62798.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 253

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+V+    +R +   +  + GF         E     E +L+P+ +++D  + G   F 
Sbjct: 22  ILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIE-QLMPDLILMDVMLPGGSGFD 80

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ    + V +  +    +    + G   GA+ ++ KPF ++ L   +R + + 
Sbjct: 81  LCKALRQS---SQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR 136


>gi|294678357|ref|YP_003578972.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
 gi|294477177|gb|ADE86565.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 2/123 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  + LVD    +           G+ V        A +   K  LP+  V+D  M  + 
Sbjct: 1   MSRIALVDDDRNILTSVSMTLEAEGYEVETYNDGQAALDAFSK-RLPDMAVLDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R       + V +L  + D    + G R GA+ ++ KPF++  L   +R L + 
Sbjct: 60  GMELLQRLRQKT-TMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRR 118

Query: 121 QKS 123
           Q++
Sbjct: 119 QEA 121


>gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
 gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
          Length = 221

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +  R+     G+ V  A    +   F       + +V+D  +  +   
Sbjct: 2   RLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDG-HFLGATESYDAVVLDLGLPTIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L     +   +AG  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRR 118


>gi|258593855|emb|CBE70196.1| putative response regulator in two-component reguatory system,
           sigma54 dependent transcriptional regulator [NC10
           bacterium 'Dutch sediment']
          Length = 452

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              L+VD    +R +  +     G+MV  A S  EA E        + +++D  M G+  
Sbjct: 11  TRALVVDDERPIRLLMENELPRAGYMVTCAGSGEEALEQLRT-REFDVILLDLKMPGIGG 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R    GT   V  L    D +  I   + GA  +L KPF    L   +R   + +
Sbjct: 70  MEALRRIRDSGTSAEVVILTGHPDVDSAIQAMKLGAYDYLTKPFKLVELEEVLRRAAERK 129

Query: 122 KSKDENQFL 130
           + + EN  L
Sbjct: 130 RLRTENTAL 138


>gi|209515806|ref|ZP_03264669.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503833|gb|EEA03826.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 228

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL++    + +  +      GF V        A E    +     +++D  + G+   
Sbjct: 2   RLLLIEDDRPIARGIQSSLEQAGFTVDMVHDGIFA-EQALTQNRHELVILDLGLPGIDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         V  L    +    + G  +GA+ +LLKPF    L   +R + + 
Sbjct: 61  TLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYLLKPFEPAELEARIRAVMRR 118


>gi|78356984|ref|YP_388433.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78219389|gb|ABB38738.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 395

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           S+L VD       V   +  D  ++V  AT+  +A E    +  P+ +++D  M G+   
Sbjct: 9   SVLCVDDMPANLAVLDGILRDE-YIVLTATNGHDALEIATGDSPPDLILLDVVMPGMDGY 67

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++P    + V ++    D      G   GA  ++ KPF++  +R  +R    +
Sbjct: 68  QVCRTLKKIPATAAIPVIFVTSLDDEGNEEKGFSLGAVDYVQKPFSQLVIRARVRAHLVI 127

Query: 121 QKSKDENQ 128
            +++   +
Sbjct: 128 YRTQRILE 135


>gi|88858741|ref|ZP_01133382.1| Response regulator receiver [Pseudoalteromonas tunicata D2]
 gi|88818967|gb|EAR28781.1| Response regulator receiver [Pseudoalteromonas tunicata D2]
          Length = 420

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
             +L +D    +R + +   +D+   V  A +  +      K   P+ +++D  M G+  
Sbjct: 21  KLVLAIDDDKFIRSLIQQTLHDY-CEVTVAENGEQGIRAAIK-KSPDIILLDVEMPGMTG 78

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +++     D+ V ++         I G  +GA+ +++KPF ++ L   +  L Q
Sbjct: 79  YEVCQMLKRDSSTNDIPVMFISGRGALSDRIRGYNSGADDYIVKPFEKDELLARIEVLYQ 138

Query: 120 -MQKSKDENQFLD 131
             Q+S    + + 
Sbjct: 139 YRQRSISLKEHIA 151


>gi|317501465|ref|ZP_07959663.1| KDP operon transcriptional regulatory protein KdpE [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897094|gb|EFV19167.1| KDP operon transcriptional regulatory protein KdpE [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    +R +         +    A +   A         P+ +++D  +  
Sbjct: 1   MNKPLILVVEDDTSIRNLITTTLKTNDYRYVVAMNGKMAL-MEATSHRPDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +   I  +  +   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  MDG-IEVINNIRSWSNMPIIVISARSEDNDKIEALDAGADDYLTKPFSVEELLARIRVTQ 118

Query: 119 QMQKS 123
           +    
Sbjct: 119 RRISL 123


>gi|299135367|ref|ZP_07028557.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298589775|gb|EFI49980.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    +           G++V    +  +A    + E     +++D  + G+   
Sbjct: 2   RVLVVEDDQRIASDVSRTLEASGYVVETVANGEDALFLGDTEDY-GAIILDLGLPGMEGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  + V  L     + + + G  AGA+ +L KPF  E L   +R + + 
Sbjct: 61  AVLKRWRTNGRHMPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118


>gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 222

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L+VD    + +  +   ++ G+    A     A      +   + +++D  +      
Sbjct: 2   RILMVDDEVKICEFVQACLDNEGYQTEVAHDGKTALSLF-HQYTYDLILLDRMLPDVSGE 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +RQ    +D+ +  L  +++ E  I G + G + ++ KPFN   L   ++ + + 
Sbjct: 61  EICKQIRQQ---SDIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKR 117

Query: 121 QKSKDENQFL 130
              K +NQ L
Sbjct: 118 T-IKKDNQDL 126


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L++D  + +  V R      G  VFEA     A E  E+ + P+ +++D  +  +  
Sbjct: 5   KRVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFER-VNPDLIILDLMLPDMTG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      V +  L  ++D + +I+G   GA+ ++ KPF+   L   +  L +
Sbjct: 64  EEICKAIRKKSR---VPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLR 120

Query: 120 MQKSKD 125
               + 
Sbjct: 121 RVSEEA 126


>gi|153854044|ref|ZP_01995377.1| hypothetical protein DORLON_01368 [Dorea longicatena DSM 13814]
 gi|149753426|gb|EDM63357.1| hypothetical protein DORLON_01368 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 51/135 (37%), Gaps = 4/135 (2%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+   +L+V+    VR +         +    A     A         P+ +++D  +  
Sbjct: 1   MNKSLILVVEDDTSVRNLITTTLKAHEYRYLTAPDGQSAI-LETSSHNPDIVLLDLGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +      ++++   +++ +  +    +    I    AGA+ +L KPF+ E L   +R   
Sbjct: 60  IDGV-EIIKKIRTWSNMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQ 118

Query: 119 QMQKSKDENQFLDAI 133
           +      +    +A+
Sbjct: 119 RRLSMMQKVSPAEAV 133


>gi|148654515|ref|YP_001274720.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus sp. RS-1]
 gi|148566625|gb|ABQ88770.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Roseiflexus sp. RS-1]
          Length = 513

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
           S+L+V+   +V      L +  G+ V    +  EA    +     + ++ D  M  +  +
Sbjct: 13  SILVVEDDPMVNSFCARLLHMKGYSVKTVFNGREALTMLQTN-RFDLVLTDLQMPEMGGM 71

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E +  +R+     D+           E      + GA  +L KPF+ + L   +R   + 
Sbjct: 72  ELLREMREQ--HPDIDTIMFTAYATVETAREALKLGAFDYLTKPFSVDELERTVRRAVEW 129

Query: 121 QKSKDENQFLDAI 133
           ++ + E Q L  +
Sbjct: 130 RRVRQERQRLSEV 142


>gi|8515817|gb|AAF76190.1|AF271295_1 sensory kinase [Mycobacterium smegmatis]
          Length = 186

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+L+V+    +      L    GF     T    A    ++    + L++D  + G+ 
Sbjct: 1   MSSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGA-DILLLDLMLPGMS 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R       V V  +         + G   GA+ ++ KP++       +R + 
Sbjct: 60  GTDVCTQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSAREFIARVRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|78060219|ref|YP_366794.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964769|gb|ABB06150.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 237

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           MD +L++D    +R +         + V  A +  +           + +V+D  ++G  
Sbjct: 1   MDHILVIDDDPNIRTLLGDYLRAMNYRVTLAENGLQ-LRQALGTSTVDLVVLDLMLDGED 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    +RQ     DV +  L         I G   GA+ +L KPF+   L   ++ + 
Sbjct: 60  GLDLTRDLRQR---HDVPIVILSARGGLLDRILGLEMGADDYLPKPFDPRELVAKIKVVL 116

Query: 119 QMQKSKDENQFLDA 132
           +  ++    +  +A
Sbjct: 117 RRTRAIPGTRRTEA 130


>gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 224

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M+ +L+VD    +  +   L  + G+    A     A     KE   + +++D  M    
Sbjct: 1   MEHILIVDDEIQITSIVGELLQEEGYQTTVANDGMNAI-KLIKEQDFDLIILDIMMPYVN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            L+    VR+    TDV + ++         I G   G + ++ KPF  E L   ++   
Sbjct: 60  GLDVCRSVRE---FTDVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHL 116

Query: 119 QMQKSKDE 126
           + +K K +
Sbjct: 117 RREKRKQQ 124


>gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 221

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    + +  R+     G+ V  A    +   F       + +V+D  +  +   
Sbjct: 2   RLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDG-HFLGATENYDAVVLDLGLPTIDGL 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G    V  L     +   +AG  AGA+ +L KPF  E L   +R L + 
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRR 118


>gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 236

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+ +LL+D    + ++        GF +    +                +++D  +    
Sbjct: 1   MNKVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEY-CLIILDVMLPDTS 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F  ++ +R       V V  L    +    + G   GA+ ++ KPF    L   MR + 
Sbjct: 60  GFNVLSRLRGDSA---VPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVL 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|260913187|ref|ZP_05919669.1| transcriptional regulatory protein CpxR [Pasteurella dagmatis ATCC
           43325]
 gi|260632774|gb|EEX50943.1| transcriptional regulatory protein CpxR [Pasteurella dagmatis ATCC
           43325]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    + ++   L    GF +  A +  +A +  +     + +++D  M  + 
Sbjct: 1   MPKILLVDDDVELVELLAELLTLEGFEIDIANNGQQALDKLDIGY--DVVLLDIMMPVLN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++++ L + V V  L    D    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 59  GV-ETLKKIRLQSSVPVIMLTARGDDIDRILGLELGADDYIPKPFNDRELVARIKAILRR 117

Query: 121 QKSKD 125
            + + 
Sbjct: 118 VQLQQ 122


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    +           G+            E    E   + +++D  +  + 
Sbjct: 1   MSRILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNED-FDVILLDLMLPELN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R      +  +  +         ++G   GA+ +++KPF  E L   +R L + 
Sbjct: 60  GIEVARRVREE-KNTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118

Query: 121 QKSKDEN 127
              +D N
Sbjct: 119 ISIEDGN 125


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 1    MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
            M  +LLV+   I     + +    G+ V  A     A   C  +   + +++D  M  + 
Sbjct: 1249 MHRVLLVEDDEISLHTVKRMLEKSGYAVSTAQDGQIAIG-CLSDPDFDLILMDVQMPVLD 1307

Query: 61   EF--IAHVRQM-PLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
                   +R       D+ +  +              AG N ++ KP +   L+  +  +
Sbjct: 1308 GVEATKLIRASGASYADIPIIAMTAYAMTGDKEKFLAAGMNDYISKPVDMAALKEVIERV 1367

Query: 118  PQMQKS 123
             +   +
Sbjct: 1368 MEKAAA 1373


>gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
 gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           + +V+    +R++      + G+ V E  +          E +P+ +++D  +  +    
Sbjct: 5   IYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSK-TAEKVPDLVLLDIMLPDMDGLE 63

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R  P    + +  +  +      + G   GA+ +L KPF    L   ++ L +  
Sbjct: 64  IVKKLRSRPDTVRIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRS 123

Query: 122 KSKDENQFL 130
           ++  +++ L
Sbjct: 124 RALQDDKQL 132


>gi|116073982|ref|ZP_01471244.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069287|gb|EAU75039.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 249

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF+V  A    +  E  +++ +P+ ++ D  M      
Sbjct: 23  RLLLVDDEPGLRAAVQAYLEDEGFVVTTAVDGLDGWEKAQQQ-MPDLVISDVMMPRCDGY 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             +  +R         V +L  +        G  AG + ++ KPF+ + L
Sbjct: 82  GLLEKMRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDEL 131


>gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630]
 gi|254976918|ref|ZP_05273390.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094303|ref|ZP_05323781.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102486|ref|ZP_05331463.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308391|ref|ZP_05352562.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316058|ref|ZP_05357641.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518715|ref|ZP_05386391.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651836|ref|ZP_05398738.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684864|ref|YP_003216149.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688522|ref|YP_003219656.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521624|ref|ZP_07407971.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252376|emb|CAJ70217.1| Two-component response regulator [Clostridium difficile]
 gi|260211027|emb|CBA66352.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214539|emb|CBE07065.1| two-component response regulator [Clostridium difficile R20291]
          Length = 219

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + K+  ++    G  V   + V +A          N +++D  M  + 
Sbjct: 1   MSKILVVDDELDMLKLIENVLKRDGHEVKVISDVEKAMNM--DFNYFNLIILDVMMPKMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R      D  + +L  +     ++ G   GA+ ++ KPF    LR  +    
Sbjct: 59  GFEVCKTIRNK---VDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHL 115

Query: 119 QMQKSKDEN 127
           + +  + +N
Sbjct: 116 RRESREKKN 124


>gi|86131764|ref|ZP_01050361.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85817586|gb|EAQ38760.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 236

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLV+       V +       + V  A +  E  E  +K+   +  ++D  M     
Sbjct: 6   KKILLVEDDPNFGTVLKDYLMMNDYDVTHAKNGMEGFEKFKKDDY-DLCILDVMMPYKDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           F           ++ + +L  +   E ++ G + GA+ +L KPF+ E L   ++ + Q +
Sbjct: 65  FTLAKEIREKNEEIPIIFLTAKALKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124


>gi|329848622|ref|ZP_08263650.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843685|gb|EGF93254.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 237

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LLVD    +R +         + + EA S   A         P+ +V+D  +  +  
Sbjct: 5   TKILLVDDEPEIRSMLSIFLGVEDYDIIEADSGKAALRQII-GAKPDLIVLDLGLPEMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              I  VR+    ++  +  L    D  + +    AGA+ ++ KPF  E L   ++   +
Sbjct: 64  QEVITAVRK---FSNTPIVVLTARSDDSETVKALNAGADDYVTKPFRAEILLARIQANLR 120

Query: 120 MQKSKDE 126
             K+  E
Sbjct: 121 QGKTVSE 127


>gi|322833865|ref|YP_004213892.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169066|gb|ADW74765.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 2/128 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+V+    +R+  R      G  VFE+ ++            P+ +++D  +      
Sbjct: 7   NILIVEDEKEIRRFVRTALEAEGLRVFESETLQRGLIEAGT-RKPDLVILDLGLPDGDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
             ++R +   + + +  L      E  IA   AGA+ FL KPF    L   +R   +   
Sbjct: 66  T-YIRDLRHWSAIPIIVLSARTREEDKIAALDAGADDFLTKPFGVGELLARVRVALRRHT 124

Query: 123 SKDENQFL 130
              +   L
Sbjct: 125 GSAQESPL 132


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++ +      G+    A +  E      +E   + L++D  +  +   
Sbjct: 5   RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEF-QEHDWDLLLLDVMLPELSGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
               R         V  L         ++G   GAN ++ KPF  E L   +R   +
Sbjct: 64  EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLR 120


>gi|283853372|ref|ZP_06370619.1| response regulator receiver modulated serine phosphatase
           [Desulfovibrio sp. FW1012B]
 gi|283571240|gb|EFC19253.1| response regulator receiver modulated serine phosphatase
           [Desulfovibrio sp. FW1012B]
          Length = 383

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
            +L++D   I  +    +  + GF+   A S  + RE   +E  P+ +++D  M G    
Sbjct: 17  RILIIDDETINVETLAWMLKEAGFVPLRAASGQKGREIAARE-QPDLVILDIMMPGESGF 75

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    +   P  TD+ + ++    D E  + G R GA  ++ KPF RE +   ++   ++
Sbjct: 76  DTCTRLTADPATTDIPIIFISGLDDVENKVKGLRIGAVDYVTKPFAREEVLARVKIHIRL 135

Query: 121 QKSKD 125
           ++   
Sbjct: 136 RRGLK 140


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +R +        G+ V    +   A    E+ L P+ +++D  +  +  F
Sbjct: 13  RLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVER-LRPHLVLLDVMLPDLDGF 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G +  + +L      +  I G   G + ++ KPF+ E +   +  + + 
Sbjct: 72  EVTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRR 129


>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 235

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++          +++ A +  +A    E   + +  +ID  M  + 
Sbjct: 1   MAKILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNV-DLAIIDIMMPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   V+++     + V  L  + ++   I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  GY-HLVKKIREKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRR 118


>gi|227823949|ref|YP_002827922.1| putative two-component sensor protein/histidine protein kinase
           [Sinorhizobium fredii NGR234]
 gi|227342951|gb|ACP27169.1| putative two-component sensor protein/histidine protein kinase
           [Sinorhizobium fredii NGR234]
          Length = 123

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLV+ + + R +     +  GF V  A +  +  E    E  P+ +++D S+  + 
Sbjct: 1   MTRILLVEDNEMNRDMLSRRLSRRGFDVLIAENGKDGVEIAASE-RPDLILMDMSLPVMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  ++  P+   + V  L              AG + +  KP +   L   + +L 
Sbjct: 60  GWEATRQIKANPVTCGIPVIALTAHAMASDRDMALDAGCDDYDSKPIDLPQLVRKIEQLL 119


>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
 gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +  +      +    V++  S  EA   C      +  ++D  +  +   
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEAL-VCIGSTDFDLAILDIMLPDISGL 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R         V  L  +      I G   GA+ ++ KPF    L   ++   + 
Sbjct: 63  SICQSIRSKEYTY--PVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120

Query: 121 QK 122
            K
Sbjct: 121 YK 122


>gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
 gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL++    +R       +  G  V  A +  +  +   +E  P+ +V+D  + G+ 
Sbjct: 1   MPFLLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLL-REQRPDLIVLDVMLPGID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R       + +  L    D   ++ G  +GA+ +++KP     L   +R + 
Sbjct: 60  GFEVCRRIR---RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVL 116

Query: 119 QMQKSKDEN 127
           +  + +  +
Sbjct: 117 RRGEREASD 125


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|16329397|ref|NP_440125.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
 gi|1651878|dbj|BAA16805.1| regulatory components of sensory transduction system [Synechocystis
           sp. PCC 6803]
          Length = 452

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++LLVD      ++   L  + G+ V   TS   A    +    P+ +++D  M  +   
Sbjct: 10  NILLVDDLPNNLQLLSDLLINLGYTVRSVTSGKMALRTLQV-KRPDLILLDIKMPDMDGY 68

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++     D+ + ++    D    +     G   ++ KPF  E +   +     +
Sbjct: 69  QVCEMIKKEEELQDIPIIFISALGDTFDKVKAFECGGVDYITKPFQIEEVVARIEGQFTI 128

Query: 121 QKSKDENQF 129
           Q+ +   + 
Sbjct: 129 QRQRIALKR 137


>gi|305667464|ref|YP_003863751.1| putative diguanylate phosphodiesterase (EAL domain) with response
           regulator receiver modulation [Maribacter sp. HTCC2170]
 gi|88709512|gb|EAR01745.1| putative diguanylate phosphodiesterase (EAL domain) with response
           regulator receiver modulation [Maribacter sp. HTCC2170]
          Length = 350

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +LL++   ++R+    L     + V  A++  +      KE +PN +V D  M    
Sbjct: 1   MRKVLLIEDDTVLRENTAELLELSDYEVITASNGRKGV-IAAKEHMPNVIVCDIMMPVLD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +  + +  +   +   +L  + + + +  G   GA+ ++ KPF    L  A+    
Sbjct: 60  GYGVLKELGEDEMTKHIPFIFLSAKTEKKDVRKGMNLGADDYVTKPFEETELINAIESRL 119

Query: 119 QMQKSKDE 126
                 +E
Sbjct: 120 ARAAILNE 127


>gi|332637342|ref|ZP_08416205.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 250

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGV 59
           M  LL+V+ +  V ++    F    +    A    +A     +E    + +++D ++ G+
Sbjct: 1   MK-LLMVEDNTSVSEMMGMFFKKENWDASYAYDGNDAVAMFNEEPDAWDMVILDLNLPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 V+   +   V +  L         + G   GA+ ++ KPF+  TL   ++ L +
Sbjct: 60  DGMQVAVKIREVSKHVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHR 119

Query: 120 MQKSKDE 126
             ++  +
Sbjct: 120 RSETAGQ 126


>gi|327462258|gb|EGF08585.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|332360674|gb|EGJ38483.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 237

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++LLVD    +  + +      G+ V  A    E  E   K+ + + ++ D  M  +  
Sbjct: 8   KTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSV-DLIITDIMMPNMDG 66

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
           +        +  D    +   +   +  I G   GA+ F+ KPF+   L   +  + +  
Sbjct: 67  YDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRRL 126

Query: 122 KSKDENQFLD 131
               E + ++
Sbjct: 127 HRGGEIEQIE 136


>gi|302037686|ref|YP_003798008.1| putative response regulator receiver modulated Serine phosphatase
           [Candidatus Nitrospira defluvii]
 gi|300605750|emb|CBK42083.1| putative Response regulator receiver modulated Serine phosphatase
           [Candidatus Nitrospira defluvii]
          Length = 421

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 3/131 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD   I R          G+ V EA            +  P+ +++D  M G+ 
Sbjct: 21  MPVILLVDDDQITRISMAGRLKRLGYRVIEAGDGIAGLAAIRAQ-RPDLVILDWMMPGLD 79

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R         V  +      E++  G   GA+ FL K  +++ +   ++   
Sbjct: 80  GPSVCEAIRADGELRSSQVVLMTAHDQPEQIAEGLSRGADDFLSKAASKQEVLARVQASL 139

Query: 119 QMQKSKDENQF 129
           +      E + 
Sbjct: 140 RSSALVREIER 150


>gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 223

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++        G+ V  A +  +A    E   LP+  V+D  M G+ 
Sbjct: 1   MK-ILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGN-LPDLAVVDVMMPGMD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F           D+ V  L  + + E    G  AG++ +++KPF  + L F +  + + 
Sbjct: 59  GFTLTEYLTQDY-DIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRR 117


>gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+++    +R          G+ + EA +  EA E    E      ++D  +   
Sbjct: 13  MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 72

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    +R       V +  L  +   +  I G  +GA+ +++KPF+ + L   +  L
Sbjct: 73  SGIEVCKFIR--ENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSAL 130

Query: 118 PQM 120
            + 
Sbjct: 131 LRR 133


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M+ +LLV+    +  +      +  F V       EA+   E+    +  ++D  +    
Sbjct: 1   MEKILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNS-FSLAILDVMLPDIT 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             +    +R+        +  L  + +    I G   GA+ ++ KPF    +   ++   
Sbjct: 60  GFDLCKIIRKKHHY---PIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQI 116

Query: 119 QM---QKSKDENQFL 130
           +        D+N+ +
Sbjct: 117 RRSTQYNGSDQNKLI 131


>gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 396

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L++D   ++  +   +  + G+ VF A S  E  E  E E  P  +++D  M  +   
Sbjct: 11  RVLIIDDEKVILDLTGIILKNRGYQVFTALSALEGLETIEIE-RPELVLLDYMMPNMDGL 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A      L  D +V     +   E  +   +AGA+ ++LKPFN + L   +  + +++ 
Sbjct: 70  TALKEIKRLYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLRG 129

Query: 123 SKDENQFL 130
            + +N+ L
Sbjct: 130 IELQNKAL 137


>gi|253569092|ref|ZP_04846502.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251841111|gb|EES69192.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1347

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 4/126 (3%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +LLLV+ +  +            F V  A +  EA E        + ++ D  M  +   
Sbjct: 1078 TLLLVEDNESMLTFILERLQ-ENFTVETAMNGIEALEILRSGH-IDLIISDIMMPVMDGY 1135

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 V+     + + + +L  + D +  I G + GA +++ KPF+   L+  +  L   
Sbjct: 1136 QLCKEVKSDMELSHIPIIFLTAKNDIDSKINGLKYGAEAYVEKPFSFNYLKEQVLSLLDN 1195

Query: 121  QKSKDE 126
            ++ + E
Sbjct: 1196 RRRERE 1201


>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    V           GF V  A    +A      +  P+ +V+D +M      
Sbjct: 6   KILVVDDDADVLTSLERGLRLSGFTVLTAVDGADAL-RVISDKRPDAVVLDINMPVLDGT 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R    G ++ +  L      +  IAG  +GA+ +++KPF    L   +R + + 
Sbjct: 65  GVVTALRA--AGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRR 122

Query: 121 QK 122
             
Sbjct: 123 SN 124


>gi|187780065|ref|ZP_02996538.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
 gi|187773690|gb|EDU37492.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M S+LLV+ +  + +  +      G+ V    S+ EA++   KE   + +++D ++    
Sbjct: 1   MKSILLVEDNISLNRGIQFSLMKEGYNVIAIDSIKEAQQKLSKEK-IDLIILDVNLPDGN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F    H+R+    +++ + +L        ++ G   GA+ ++ KPF    L   +  + 
Sbjct: 60  GFDYCLHIRK---TSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAII 116

Query: 119 QM 120
           + 
Sbjct: 117 RR 118


>gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 230

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLL+D    +  +     +  G+ V    +  E  +   +E   + +++D  +     F
Sbjct: 4   RLLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRE-RFDAVILDVMLPDGDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   + V +  L  + +    I G   GA+ +L KPFN   L   +R L + Q+
Sbjct: 63  -ELCRQIRTHSRVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQR 121

Query: 123 SKDENQF 129
           +  E + 
Sbjct: 122 APQEARL 128


>gi|148656471|ref|YP_001276676.1| response regulator receiver protein [Roseiflexus sp. RS-1]
 gi|148568581|gb|ABQ90726.1| response regulator receiver protein [Roseiflexus sp. RS-1]
          Length = 202

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD +     +      + G+ V        A +      LP+ +++D  M G+  F
Sbjct: 7   TILVVDDTPANLAILFTGLRNAGYKVLINERGDIALQTAAYA-LPDLIILDVMMPGIDGF 65

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +++ P   D+ V  +    D    + G RAGA  ++ KP + E +   +     +
Sbjct: 66  ETCRRLKEDPRTRDIPVILMTALTDPIDEVTGLRAGAVDYITKPIHVEVVLARISTHLTL 125

Query: 121 QKSKDENQF 129
           +K   + + 
Sbjct: 126 RKLYRDLER 134


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
           ++L+VD    +RK+      + G+ V +A    E  E  +K  + + +V+D  M  +   
Sbjct: 14  TILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDV-HLIVLDIMMPKIDGI 72

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR++     + +  L  +      I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 73  HMCMKVREIAE---MPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129


>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 222

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLE 61
           +L+V+    + ++        G+    A     A         P+ +++D  +     LE
Sbjct: 2   VLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAK-PDLVLLDIQLPELDGLE 60

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
            +  +R      +  V  +    +    + G   GA+ ++ KPF+   +   ++ + +  
Sbjct: 61  VLRRIRADG---NTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRA 117

Query: 122 KSKD 125
              +
Sbjct: 118 NPLE 121


>gi|325679575|ref|ZP_08159151.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108732|gb|EGC02972.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 240

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD    +      L    G+ V +A    +A E    E     ++ID  M  +   
Sbjct: 7   TILVVDDDRDIVAAIAKLLELEGYSVVKAYDGIDALEKL-AENDIQLILIDVMMPRMDGL 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G   GA+ ++ KP+N   L   +R   + 
Sbjct: 66  SAIMKIRDK-RNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVRSSLRR 122


>gi|259501353|ref|ZP_05744255.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|302190926|ref|ZP_07267180.1| two-component system response regulator [Lactobacillus iners AB-1]
 gi|259167206|gb|EEW51701.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
          Length = 245

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 1/120 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++      +  +    A    EA      +     +++D  M  +   
Sbjct: 19  KVLVVDDDKEIVELLSIYLKNENYDPIVACDGREALTKFRMDPSITCIILDIMMPEMSGL 78

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              ++++   ++V +  +         I G   GA+ ++ KPFN   +   +R L +  +
Sbjct: 79  -DFIKEVRKDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIRRSE 137


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++ +      G+ V  A       E          +++D  +  +   
Sbjct: 4   RVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEW-ELVLLDVMLPELNGI 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R    G  V V  L         ++G   GAN ++ KPF  E L   +R + ++
Sbjct: 63  EVLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRI 120


>gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 241

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+++    +  + R   +   +      +  +      K   P+ +++D S+  + 
Sbjct: 1   MKNILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGL-KFYKSNHPDLVILDLSLPDID 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+        ++ L    +    I G   GA+ ++ KPF+   L+  +    
Sbjct: 60  GMEICRSIRKSDE--STPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFF 117

Query: 119 QM 120
           + 
Sbjct: 118 RR 119


>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--F 62
           L+V+    +      L    GF          A    E+    + +++D  + G+     
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGA-DIVLLDLMLPGMSGTDV 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              +R       V V  +         + G   GA+ ++ KP++   L   +R + + 
Sbjct: 61  CKQLRARSS---VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 115


>gi|77457710|ref|YP_347215.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381713|gb|ABA73226.1| putative two-component system, response regulatory protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 1/131 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LLL+D    + ++     +  GF V        A      E  P  +V+D  +    
Sbjct: 1   MSELLLIDDDQELCELLSSWLSQEGFQVRACHDGQSA-RKALAETAPAAVVLDVMLPDGS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +      D+ V  L    +    I G   GA+ +L KP +   L   +R + + 
Sbjct: 60  GLELLKQLRSDHADLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119

Query: 121 QKSKDENQFLD 131
                 +  L+
Sbjct: 120 SHPAAVSTQLE 130


>gi|294775037|ref|ZP_06740566.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|294451081|gb|EFG19552.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
          Length = 227

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 3/128 (2%)

Query: 1   MDSL--LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M+ +  LLV+    +  + +    +  F++  A    E      ++  P+ LV D  M  
Sbjct: 1   MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQK-PDVLVADVMMPR 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    R         V +L        ++ G   GAN +L KPF  + L   ++ L 
Sbjct: 60  MDGFEMVRRIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119

Query: 119 QMQKSKDE 126
                + E
Sbjct: 120 HKAFVEKE 127


>gi|288959451|ref|YP_003449792.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288911759|dbj|BAI73248.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 240

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             + +++    +R++   +   +G+ V    S  EA     ++  P+  ++D  +  +  
Sbjct: 5   KRIYVIEDEADIRRLVADILEGYGYEVSGWASGREALAAIRRQ-APDLCLVDLGLPDMDG 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR++       V  L         + G   GA+ +++KPF    L   +    + +
Sbjct: 64  LT-LVRELWEDVRFGVIILSGRGGTSDRVLGLELGADDYVVKPFEPRELVARVNSAIRRR 122

Query: 122 KS 123
           + 
Sbjct: 123 EQ 124


>gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
 gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
          Length = 229

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  LL++D    + ++     +  GF +       +  +  +       +++D  +  + 
Sbjct: 1   MK-LLMIDDDTGLCELLSEYLSSQGFEIQSVHDGEQGLKLAQANDY-ALILLDVMLPTID 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F   ++Q+       V  L  + +    I G   GA+ ++ KPFN   L   ++ + + 
Sbjct: 59  GF-EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRR 117

Query: 121 QK 122
            +
Sbjct: 118 IE 119


>gi|86361259|ref|YP_473146.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86285361|gb|ABC94419.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 241

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 1/124 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD    +R++    F D G+ V  A    E R    ++   + +++D  + G  + +
Sbjct: 10  LLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQN-FDAVLLDLVLPGGTDGL 68

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              R++   +DV +  L    D    I G   GA+ ++ KPF+   +   ++ + + ++ 
Sbjct: 69  DLAREIRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRRRQP 128

Query: 124 KDEN 127
              N
Sbjct: 129 PARN 132


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC--EKELLPNYLVIDESMEGVLE 61
           +L+V+ +  ++ + R +    G  V  A    EA E    ++E   + +++D  M  +  
Sbjct: 420 VLIVEDAPSIQFLVRRILEGAGATVTSAGDGAEAIEMLLADQERPFDLVLMDMHMPIMSG 479

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE-LPQM 120
           + A       G ++ +  L         I    AG + +L KP ++  L   + + + Q 
Sbjct: 480 YDAAQALRQKGCEIPIIALTASAMTGDRIKCLAAGCDDYLPKPIDQRKLLQMVAKYVLQN 539

Query: 121 QKSK 124
           ++ +
Sbjct: 540 RRQE 543


>gi|87123578|ref|ZP_01079429.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86169298|gb|EAQ70554.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 250

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            LLLVD    +R   +    D GF V  A    E      ++LLP+ ++ D  M      
Sbjct: 23  RLLLVDDEPGLRSAVQAYLEDEGFDVTTAVDGEEGFAKA-QQLLPDLVISDVMMPRCDGY 81

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110
             ++ +R+        V +L  +        G  AG + ++ KPF+ E L
Sbjct: 82  GLLSRMREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPEEL 131


>gi|83859913|ref|ZP_00953433.1| sigma-54 dependent DNA-binding response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852272|gb|EAP90126.1| sigma-54 dependent DNA-binding response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 498

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 1/130 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD     R++ + +    G +   A       E  ++  + + +++D  M G+  
Sbjct: 3   KTVLIVDDDPTQRRLMQAVLEKQGHLAETAEDGEAGLERVKRGGV-DVVMLDMVMPGMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                       D+ V  L      E ++   RAGA  F +KP + E +  ++R   +++
Sbjct: 62  IETLEAIKARNPDLPVIVLTAHGGIETVVKAMRAGAVDFFVKPASPERIAVSIRNALKVK 121

Query: 122 KSKDENQFLD 131
               E   L 
Sbjct: 122 DLSGEVTRLK 131


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +LL++ +  + +V ++     G+ V  A           +E  P+ +++D  +     
Sbjct: 3   QRILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSA-RENSPDLVILDLGLPDFDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R++   + V +  L      ++ +    AGA+ ++ KPF+ E L   ++   + Q
Sbjct: 62  -AEIARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQ 120

Query: 122 K 122
           +
Sbjct: 121 Q 121


>gi|325830597|ref|ZP_08164018.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|325487343|gb|EGC89785.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 313

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFM-VFEATSVCEAREFCEK-----ELLPNYLVIDES 55
             +LLVD    +  +   + +  GF  V  A S  EA           E      V+D  
Sbjct: 80  KRILLVDDERELADMVATILHGAGFASVDIANSSAEALSSIAARSASPEHAYQLFVLDVM 139

Query: 56  MEGVLEFIA--HVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFA 113
           M G+  F     +RQ+P  T     +L  + +    ++G   GA+ ++ KPF  + L   
Sbjct: 140 MPGMDGFELLGRIRQLPAHTSTPALFLTAKDEPFDRVSGLTLGADDYIAKPFLPQELVLR 199

Query: 114 MRELPQMQKSKDENQFLD 131
           +  + +   +  EN  L+
Sbjct: 200 IAAVLRRCYA-AENPLLE 216


>gi|323704482|ref|ZP_08116060.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535944|gb|EGB25717.1| response regulator receiver modulated diguanylate cyclase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 310

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 3/123 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
            S+L+VD   + R + +++    G+ ++E+    EA +   + +LP+ +++D  M G   
Sbjct: 4   KSILIVDDDKLSRTILKNILGSAGYKIYESQDGDEALKLYRR-ILPDMVILDVVMPGLSG 62

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + +  +R       V V  L    ++E+ + G   GA++++ KPFN + L   ++ L Q
Sbjct: 63  FDLLRILRDEEENQLVPVILLTSSDNYEEKLHGLELGADAYITKPFNEKELLAQVKNLFQ 122

Query: 120 MQK 122
             +
Sbjct: 123 RIE 125


>gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M  +L+V+    +  +     +  G+                +   P+ +++D  + G  
Sbjct: 1   MQRILVVEDEQRLASILADYLHAAGYSTHCLGEGR-GVVAWVRGNRPDLILLDLMLPGRD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    +R     + V +  +   ++    + G   GA+ ++ KPF+   +   ++ + 
Sbjct: 60  GMEICKEIR---TFSTVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREVVARVKAVL 116

Query: 119 QMQKSK 124
           +   ++
Sbjct: 117 RRTSAR 122


>gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium
           variabile DSM 44702]
          Length = 224

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    + ++   +    GF         EA E    +  P+ +++D  + G+   
Sbjct: 4   KILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQH-PDLILLDLMLPGMNGV 62

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRET 109
                VR     + V +  L  + D   ++ G  +GA+ ++ KPF  + 
Sbjct: 63  DVCRAVR---DFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKE 108


>gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
           315-B]
 gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
           315-B]
          Length = 223

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++      + G+ V  A +  EA E  + E   + +V+D ++  +   
Sbjct: 2   RILIVEDEKDLCQMIAKSLKESGYEVDIAYNGNEAMELLDVENY-DLIVLDLNLPEIDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      D  +  L      +  + G   GAN +L KPF+ + L   +R L + 
Sbjct: 61  EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRR 118


>gi|271961978|ref|YP_003336174.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
 gi|270505153|gb|ACZ83431.1| sensor histidine kinase/response regulator [Streptosporangium roseum
            DSM 43021]
          Length = 1392

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +   +G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1262 KILIVDDDIRNVFALTSVLERYGSTVVYAENGREGIEQLERNEDVALVLMDIMMPEMDGW 1321

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               + +R+MP   D+ +  L  +V          +GA+ ++ KP + + L   +R     
Sbjct: 1322 ATTSAIRRMPQFADLPIIALTAKVMQGDREKSIASGASDYVPKPVDVDRLLERLRGWLTR 1381


>gi|269118927|ref|YP_003307104.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268612805|gb|ACZ07173.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    ++ + +       F V  A +  +A E   +   P  +++D  + G
Sbjct: 1   MKKNTILVVEDDLEIKTLIQFFLEKENFNVITAQNSGKALEML-QNNKPELVILDIMLPG 59

Query: 59  --VLEFIAHVRQMPLGTDVFVY-YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
              LE    +++            L  + + E +I G +AG + +L KPF+   L   ++
Sbjct: 60  LNGLEIAKLIKKESHKYGTPFIFMLTAKTETEDVIDGFQAGCDDYLRKPFDPRELILRIK 119

Query: 116 ELPQMQK 122
           +L  ++K
Sbjct: 120 KLLSLKK 126


>gi|225028678|ref|ZP_03717870.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
 gi|224953988|gb|EEG35197.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 5/121 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +         + G+ V       EA ++   E   + +V+D ++ G+   
Sbjct: 2   RLLIVEDEKELCDTISKSLYESGYEVDTCYDGYEALDYILTEDY-DLIVLDLNLPGMDGM 60

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +  +R+     +  V  L         + G  AGAN ++ KPF+ + L   +R L + 
Sbjct: 61  DILRELRK--ENEETKVLILSARSQIIDKVEGLDAGANDYMEKPFHIQELEARIRSLTRR 118

Query: 121 Q 121
           +
Sbjct: 119 K 119


>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E           ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEII-NNNSIQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 2/129 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +  +         F V       EA E+       + +++D  M  + 
Sbjct: 1   MK-ILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDY-DVIILDVMMPKMN 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +           +  V  L      ++ I G   GA+ +L+KPF+   L   +R L + 
Sbjct: 59  GYEVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR 118

Query: 121 QKSKDENQF 129
           +     N+ 
Sbjct: 119 KYGNISNEL 127


>gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 915

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD  +      +      G  +  A    E  E  +     + +++D  M  +  
Sbjct: 791 KNILIVDDDNRNIYALKTALETRGMNILVAKDGLECLEVLQAHHEIDLVLMDIMMPNMDG 850

Query: 62  FIAH--VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           + A   +RQ    TD+ +  L  +          +AGA+ ++ KP N + L   +R   
Sbjct: 851 YEAMTIIRQQMKRTDLPIIALTAKAMKNDRDKSLQAGASDYISKPLNLDQLISVLRVWL 909


>gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 5/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +LLV+    V           G+ +  A    E  E   +E     +++D  +     L
Sbjct: 2   RILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELA-QEGDFQLILLDIMLPSLNGL 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R       V +  L    + + +I G R GA+ ++ KPF  + L   +  + + 
Sbjct: 61  EVCQALRIKKNL--VPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRR 118

Query: 121 QKSKDEN 127
             ++ +N
Sbjct: 119 TPNEIKN 125


>gi|90424519|ref|YP_532889.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106533|gb|ABD88570.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 270

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +RK+         F V  A S  E R+    E   + +V+D  +       
Sbjct: 37  ILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATE-QIDLVVLDVMLPDGSGLD 95

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    +    I G   GA+ +L KPFN   L   +R + + +
Sbjct: 96  ACRDLRAKRN--PIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRRR 153


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
           ++LLV+    + ++        GF V  A    EA E    E   + +++D  +     +
Sbjct: 4   NILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERF-AERDYDLVLLDMMLPKISGM 62

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +F+  +R+    + V V  +  +        G   GA+ ++ KPF+   L   ++   + 
Sbjct: 63  DFLKKIREK---SHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRR 119


>gi|315606091|ref|ZP_07881122.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312373|gb|EFU60459.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++LLV+    + +         G+ V    +  +A          + +V+D  +  + 
Sbjct: 1   MTTVLLVEDDPAISEPLARALGREGYDVRAHATGGQALADARG---VDLVVLDLGLPDID 57

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G  V +  L    D   M+ G  AGA+ ++ KPF    L   +R L + 
Sbjct: 58  GLDVARELRASGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117

Query: 121 QKSKDENQFLDA 132
           Q S+     L A
Sbjct: 118 QTSEPAEGELRA 129


>gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium
           kansasii ATCC 12478]
          Length = 254

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  + +   +  G+ V  A +  EA    E+ + P+ LV+D  +  V   
Sbjct: 30  RVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFER-ISPDVLVLDIMLPDVDGL 88

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R           +L         + G  AGA+ ++ KPF+ E L   +R L + 
Sbjct: 89  QILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRR 146


>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
 gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
          Length = 242

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E      +    ++D  M  +  
Sbjct: 14  NSILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDV-QLAILDVMMPQMDG 72

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                R     + + + +L  +      + G   GA+ +++KPF+       ++   +  
Sbjct: 73  IELCRRIREKYS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRY 131

Query: 122 KSKDEN 127
              ++N
Sbjct: 132 TYFNQN 137


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 5   LLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVLEF 62
           L+++    + +V        GF V  A    E          P  +++D  +     +E 
Sbjct: 13  LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTAS-PAVVILDLGLPSLDGVEV 71

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R     T+ ++  +    D    + G   GA+ +L KPF    L   +  + +  +
Sbjct: 72  CRQLR---TFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPR 128


>gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGF-MVFEATSVCEAREFCEKELLPNYLVIDESMEGV-- 59
            +L++D    + ++   +    G   V  A++  +      +E  P+ +++D  +     
Sbjct: 7   KVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQE-QPDLVILDIMLPDGEG 65

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            +    +R     + V + +L  + +    I G   G + ++ KPF+ + + + ++   +
Sbjct: 66  YDICKQIR---DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLR 122

Query: 120 MQKSKDENQ 128
                  +Q
Sbjct: 123 RSSYLQPSQ 131


>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M  ++ +V+    + ++ R+     GF V    +        EK   PN  ++D  + G 
Sbjct: 1   MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTP-PNLFLLDIMVPGA 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             LE    +R         V +L  +      IAG   GA+ ++ KPF+   L   ++ +
Sbjct: 60  DGLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAV 119

Query: 118 PQM 120
            + 
Sbjct: 120 LRR 122


>gi|86158431|ref|YP_465216.1| two component sigma54 specific Fis family transcriptional regulator
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774942|gb|ABC81779.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 463

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   IVR+         G+ V  A     A E  + E     +V D  M G+  
Sbjct: 6   TRILVVDDEEIVRESLGGWLEKDGYSVHVAVDGFAALEKLKAERWSILIV-DLKMPGMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    L  ++ V  +      +  +A  + GA  +L+KPF+ E L   M+++   Q
Sbjct: 65  LQVLEEAKKLQPELAVVIMTAYATVDTAVAAMKLGAYDYLVKPFDPEELSLMMQKIVSQQ 124

Query: 122 KSKDENQFL 130
               EN  L
Sbjct: 125 TLVRENAVL 133


>gi|83814743|ref|YP_445327.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Salinibacter ruber DSM 13855]
 gi|83756137|gb|ABC44250.1| C4-dicarboxylate transport transcriptional regulatory protein
           [Salinibacter ruber DSM 13855]
          Length = 459

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 1/130 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++L+VD    +R+  R +     F V EA    EA     +E   + +++D  M  + 
Sbjct: 1   MPTILVVDDEASIRRTLREILEYEDFGVEEAVDGEEAL-VALRENAYDLVILDVKMPKMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      G +V V  +      E  +   + GA  F+ KP +   L   +R     
Sbjct: 60  GMEVLETIADEGYEVPVLMISGHGTIETAVESTKLGAFDFIEKPPDLNRLLVTVRNALDH 119

Query: 121 QKSKDENQFL 130
            + + EN+ +
Sbjct: 120 GELEVENRRM 129


>gi|307243531|ref|ZP_07525679.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493087|gb|EFM65092.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 191

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           MD +L+++    +R          G+ V EA +  EA E    E      ++D  +  + 
Sbjct: 1   MDKILILEDEIGIRSFVSINLKREGYDVIEAGTGSEAIEKLNSEPNITIALLDIMLPDMS 60

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                 ++R      ++ +  L  +   +  I G  AGA+ +++KPF+ + L F +  L 
Sbjct: 61  GVDVCRYIR--EKYENMGIIMLTAKAQEDDKIEGFVAGADDYMIKPFSIKELLFRVSALI 118

Query: 119 QMQKSKDENQ 128
           +  K  ++ +
Sbjct: 119 RRVKKDNDTR 128


>gi|269929174|ref|YP_003321495.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788531|gb|ACZ40673.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+         G+ V        A    E+E  P+ +++D +M G+  F
Sbjct: 2   RILVVDDDPRIRETLAGPLGAAGYDVTAVGDGAAALAAVERE-RPDLIILDVAMPGMDGF 60

Query: 63  --IAHVRQ---MPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                +R    +       V +L +  DF     G +AGA+ ++ KPF+   L   +R
Sbjct: 61  AVCRELRAYEELSGLPRTPVIFLTVRDDFASEETGFQAGADDYVAKPFSIPALLARVR 118


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 2    DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
              +LL D           L  + G  V  A    EA E  E+      +++D  M  +  
Sbjct: 1043 QKILLADDDMRNVFSLSALLGEQGIDVITAADGKEALERLEEHNDIRLVLMDIMMPEMDG 1102

Query: 62   --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
               +  +R +     + V  L  +           AGA+ ++ KP +   L   MR
Sbjct: 1103 YEAMRRIRAIGRYKSLPVIALTAKAMAGDREKCIAAGASDYIAKPIDSSKLLSLMR 1158



 Score = 62.1 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/133 (9%), Positives = 43/133 (32%), Gaps = 24/133 (18%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+++       + R    + G+    A +  +   F  ++ LP  +++D ++  +  
Sbjct: 778 KLVLIIEDDISFATILRDFAREKGYKTIVALNGNDGL-FFARKYLPAAILLDMTLPLIDG 836

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEV---DFEKMIAGARAGANSFLLKPFNR--------- 107
              +  ++       + ++ +            + G       +  KP            
Sbjct: 837 NSILKILKSNEDLQHILIHVISAGEISLQVRDKVEG-------YTQKPLQVTDMESVFTG 889

Query: 108 --ETLRFAMRELP 118
             + L+   +++ 
Sbjct: 890 ISDRLQARFKKVL 902


>gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 234

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +LLV+    + +         G+++    S  EA E  + E   + +++D  + G+  F 
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEK-FDLIILDVMLPGIGGFE 66

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R   L + V V  L         I G  AGA+ +L+KPFN +     +  + + 
Sbjct: 67  VCERIRALDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRR 123


>gi|218438697|ref|YP_002377026.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171425|gb|ACK70158.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 597

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++    + ++         + V   T      EF       + +++D  +  + 
Sbjct: 1   MK-ILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKY-SLILLDVIIPILD 58

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 +    G +  +  L  +   E +I G  AGA+ ++ KPF+ E L   +R L + 
Sbjct: 59  GLSLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRR 118

Query: 121 QKSKD 125
           Q  K 
Sbjct: 119 QDIKR 123



 Score =  106 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 3/122 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +++VD   I  K    L   +   V   +      +       P+ L++D  M     L
Sbjct: 477 KVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTN-PDVLLLDLEMPTFNGL 535

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    VRQ      + +  +    D   +     AGA+ F+ KP     +   +    + 
Sbjct: 536 ELCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIER 595

Query: 121 QK 122
            +
Sbjct: 596 SR 597



 Score = 34.4 bits (79), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 40  FCEKELLPNYLVIDES----MEGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARA 95
              K+  P+ +++        +  L  +  +++      + V     + +  + +A  R+
Sbjct: 388 QWLKQNTPDVIMLSLHRSLTQDSGLMLLQQLKKQ--FPSIPVLVTTEKDNLYERVAVVRS 445

Query: 96  GANSFLLKPFNRETLRFAMRELP 118
           G   ++L+    E +  A+ E+ 
Sbjct: 446 GGEGYILQTATTEEVFGAITEVL 468


>gi|167766709|ref|ZP_02438762.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
 gi|167711463|gb|EDS22042.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
          Length = 240

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +    +       + +  A    EA +   ++ +   ++ D  M  +   
Sbjct: 10  KILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLII-DVMMPKMDGL 68

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A ++      ++ +  L  + +    I G   GA+ ++ KPF  + L   ++   + 
Sbjct: 69  SATMKIRES-KNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRR 125


>gi|116252485|ref|YP_768323.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257133|emb|CAK08228.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 246

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A    + R F E   + + +V+D  M G     
Sbjct: 7   ILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAV-DLIVLDVMMPGDDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D    I G   GA+ +L KPF    L   ++ + +  
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|94270842|ref|ZP_01291836.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450644|gb|EAT01749.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 650

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +     R +   +  + G  V E      A E  +K   P   ++D  M G+   
Sbjct: 2   RILIAEDDSTSRNMLAAILREAGHEVTETFDGAGAWEELQKPDAPRLAILDWMMPGMDGL 61

Query: 63  I--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM---REL 117
                VR +      ++  L  + +   +IAG  AGAN +L KPF+   +   +   R L
Sbjct: 62  EVVHRVRGVETDQPPYLIMLTAKGEKADIIAGLDAGANDYLAKPFDAGEMLARVEVGRRL 121

Query: 118 PQMQKSKDE 126
            + Q +  E
Sbjct: 122 VKTQNALAE 130



 Score =  108 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFC-EKELLPNYLVIDESMEGVLEF 62
           +L+V+    +R++   + +  G+ V  A +  EA     EK L P+ ++ D  M G+   
Sbjct: 534 ILVVEDEASLRELLEAILSRSGYKVTLAANGGEALLLMEEKGLQPDLVITDVVMPGMSGS 593

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           +   R      D+ V ++    D   +  G       F+ KPF R  +   +R + +
Sbjct: 594 VLTERLRRKQPDLKVLFMSGYTDDAIVHHGVLNQGTPFIQKPFTRRAMAEKVRAVLR 650


>gi|49073866|gb|AAT49361.1| PA0179 [synthetic construct]
          Length = 122

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD S  +R++        G+ V EA    E     + +   + +  D++M  +    
Sbjct: 5   ILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSKSY-SLVFTDQNMPNMDGLS 63

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            I  +R +     V +  L  E        G  AGA  +L+KPF+   L    R++ 
Sbjct: 64  LIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120


>gi|78223873|ref|YP_385620.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter metallireducens GS-15]
 gi|78195128|gb|ABB32895.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter metallireducens GS-15]
          Length = 395

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D   ++  +   + ++ G+ V+ A       E  E E  P+ +++D  M  +  F
Sbjct: 11  TILIIDDEKVILDLTSIVLSNRGYTVYTAPDAMVGLEELE-EHHPSLVLLDYMMPVMDGF 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A  +      D +V     + + E  +   +AGA+ ++LKPFN + L   +  + +++ 
Sbjct: 70  TALKQIRQRFPDTYVIMFTGKGNEEIAVELMKAGASDYILKPFNNQDLVERIESVLRIRA 129

Query: 123 SKDENQFLDA 132
            +  N+ L A
Sbjct: 130 VELRNRELMA 139


>gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens
           str. C58]
 gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens
           str. C58]
          Length = 309

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 4/132 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLVD S              GF    ATS   A    E+ + P+ +++D  M  +  F 
Sbjct: 13  VLLVDDSPDALGFLTDALEQSGFSALIATSGQAALNIAER-ITPDIILLDAVMPVMDGFE 71

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++       V V ++    + E ++    +G   +L KP N + LR  +R      
Sbjct: 72  TCRRLKANAAVAQVPVIFMTGLTETEHVVRALESGGVDYLTKPINIDELRARIRVHLSNA 131

Query: 122 KSKDENQF-LDA 132
           +S    +  LDA
Sbjct: 132 RSAQSARVALDA 143


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
          Length = 218

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+V+ +  + K+        G+ V+   +  EA +  E++   +  ++D  +    
Sbjct: 1   MK-ILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQE-FDLALLDIMLPEID 58

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E  A++R+     D+ V +L  +      ++G R+GA  ++ KPF+ E L   +  + 
Sbjct: 59  GYEVFAYMRE----YDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVL 114

Query: 119 QMQKSKDENQFLD 131
           +       N+ L 
Sbjct: 115 RRNGKSSSNKLLK 127


>gi|218887239|ref|YP_002436560.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758193|gb|ACL09092.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 477

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L+VD     R + R +   +G+   EA     A     ++   + +++D  M  +   
Sbjct: 5   TILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKV-RQRAWDAVLMDVRMARMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            A    +       V  +      +  +   R GA  +L+KP + + LR  +       +
Sbjct: 64  AALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALDHTR 123

Query: 123 SKDENQFLDA 132
              EN+ L  
Sbjct: 124 LASENRELRE 133


>gi|212696240|ref|ZP_03304368.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676869|gb|EEB36476.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 231

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
           + +L+ D    +R+  +      GF + EA +  EA +  ++E  P+  ++D  + G   
Sbjct: 3   NKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEK-PSVFILDIMLPGISG 61

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    +R+      V +  +  +      I G   G + +++KPFN + L   +R L +
Sbjct: 62  YEVCDTIRK--KYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


>gi|220917058|ref|YP_002492362.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954912|gb|ACL65296.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 464

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 1/129 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD   IVR+         G+ V  A     A E  + E     +V D  M G+  
Sbjct: 6   TRILVVDDEEIVRESLGGWLEKDGYSVHVAADGFAAVEKLKGERWSILIV-DLKMPGMDG 64

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    L  ++ V  +      +  +A  + GA  +L+KPF+ E L   M+++   Q
Sbjct: 65  LQVLEEAKKLLPELAVVIMTAYATVDTAVAAMKLGAYDYLVKPFDPEELSLMMQKIVSQQ 124

Query: 122 KSKDENQFL 130
               EN  L
Sbjct: 125 TLVRENAVL 133


>gi|119513415|ref|ZP_01632446.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119461935|gb|EAW42941.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 241

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    VR + +       + V  A     A    E +  P+ +++D ++  V+ F
Sbjct: 7   KILVVDDDPAVRNLIQRFLIKQTYQVEAAEDGKTALALFE-QFNPDLVILDVNLPDVIGF 65

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               ++M     VFV  L    D    I G   GA+ +L KPF    L   +  + + Q+
Sbjct: 66  -NLCQEMQSRNGVFVLMLTSRADEADKIRGFSKGADDYLTKPFGLGELEVRVGAILRRQR 124

Query: 123 S--KDENQFL 130
                E + L
Sbjct: 125 IVTTAEQKRL 134


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M    +L+V+    +     +     G  V   T   EA +   +   P+ +++D  +  
Sbjct: 1   MKQPAVLVVEDESAIADTILYALRTEGMQVETCTLGSEALDRV-RSRRPDLVILDVGLPD 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +  F    R M   +DV V +L    +    I G   GA+ +++KPF+   L   +R + 
Sbjct: 60  ISGFEVC-RSMRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVIL 118

Query: 119 QMQK 122
           +  K
Sbjct: 119 RRAK 122


>gi|254227862|ref|ZP_04921292.1| transcriptional regulatory protein CpxR [Vibrio sp. Ex25]
 gi|262396149|ref|YP_003288002.1| probable transcriptional regulator SyrB [Vibrio sp. Ex25]
 gi|151939358|gb|EDN58186.1| transcriptional regulatory protein CpxR [Vibrio sp. Ex25]
 gi|262339743|gb|ACY53537.1| probable transcriptional regulator SyrB [Vibrio sp. Ex25]
          Length = 221

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G++V        A ++ EK  + + +++D  +  + 
Sbjct: 1   MSRVLIVDDDVPLCELLEAVLQEEGYIVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GMQVARRICQRFA-TPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRR 118

Query: 121 QKSKDENQFL 130
              + + Q +
Sbjct: 119 VGLERQRQTM 128


>gi|91773839|ref|YP_566531.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91712854|gb|ABE52781.1| pleD-like multisensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 462

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--L 60
            +L+VD      ++     +   +    A    EA E  EK+   + +++D  M  +   
Sbjct: 8   RILVVDDDQKNVELMEAYLSP-DYETIPAYRGKEALEILEKDE-IDLVLLDVMMPDMKGY 65

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +++      + V  +      +  I G  AGA+ FL KP ++  L+  ++ L ++
Sbjct: 66  EVCIKLKEDIKTQFIPVIIVSALSRKKDRIQGLEAGADEFLTKPVDQIELKTRVKSLLRL 125

Query: 121 QKSKDEN 127
           ++  D N
Sbjct: 126 KELYDRN 132


>gi|16331910|ref|NP_442638.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001828|dbj|BAA10709.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 1/128 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELL-PNYLVIDESMEGVLE 61
            LLLV+    +            ++V        A  + ++  +     + D  + G+  
Sbjct: 2   RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                +     + + +  L  +      + G  AGA+ +L+KPF    L   +R L +  
Sbjct: 62  LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRRS 121

Query: 122 KSKDENQF 129
                 Q 
Sbjct: 122 PELQPQQL 129


>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas sp. SN2]
          Length = 224

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+ +    +      L    G+ V  A +   A  +   E   +  +ID  +  +  F
Sbjct: 2   RILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHAL-YLLNEYAYDLAIIDIGLPKMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
                         V  L     +++ + G  AGA+ +L KPF+ E L   ++ L +   
Sbjct: 61  EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120

Query: 123 SKD 125
            + 
Sbjct: 121 GQA 123


>gi|329122896|ref|ZP_08251467.1| aerobic respiration control protein ArcA [Haemophilus aegyptius
           ATCC 11116]
 gi|327471827|gb|EGF17267.1| aerobic respiration control protein ArcA [Haemophilus aegyptius
           ATCC 11116]
          Length = 236

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+   + R   + +F   G+ VFEA +  E           N +V+D ++ G    
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGTE-MHHILANHNINLVVMDINLPGKNGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +   R++    ++ + +L    +    I G   GA+ +L KPFN   L    R L     
Sbjct: 64  LLA-RELGEELNLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRTM 122

Query: 123 SKDENQ 128
            + E +
Sbjct: 123 PQQEKE 128


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QK 122
             
Sbjct: 155 HH 156


>gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    + ++      + G+ V  A +  EA E  + E   + +V+D ++  +   
Sbjct: 2   RILIVEDEKDLCQMIAKSLKESGYEVDIANNGNEAMELLDVENY-DLIVLDLNLPEIDGM 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                      D  +  L      +  + G   GAN +L KPF+ + L   +R L + 
Sbjct: 61  EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRR 118


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+VD                   V  A +  +A E  E     + +++D  M  +  
Sbjct: 782 KVVLIVDDDMRNVFALTAALESQNMEVVFAENGSDAIEMLEGNKTIDIVLMDIMMPVMDG 841

Query: 62  FI--AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +     +R      ++ +  L  +          +AGA+ ++ KP + E L   M+   
Sbjct: 842 YEAMKAIRTYEQFKELPIIALTAKAMKNDREKCIQAGASDYISKPVDMEQLLSLMKVWL 900


>gi|187933060|ref|YP_001885916.1| metal dependent phosphohydrolase, HD region with Response Regulator
           Receiver modulation [Clostridium botulinum B str. Eklund
           17B]
 gi|187721213|gb|ACD22434.1| metal dependent phosphohydrolase, HD region with Response Regulator
           Receiver modulation [Clostridium botulinum B str. Eklund
           17B]
          Length = 302

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 61/133 (45%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D +    ++ + L   +G+ V+ A    +  E   + + P+ +++D  + G+ 
Sbjct: 1   MGKVLIIDDNKQNCEIIKDLLYTWGYCVYLAFDGFDGFELA-RSVKPDVILLDVMLPGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +++     ++ +  L +  + E  I G   GA+ FL KP   + L+  +    
Sbjct: 60  GFEACKKLKETEETQNIPIIMLTVLSEVEDRIRGFNVGADVFLSKPIVYQELKNRINWAI 119

Query: 119 QMQKSKDENQFLD 131
           + ++  D  + +D
Sbjct: 120 KSKRVFDNMEQID 132


>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            S+LL++    + ++ R      GF V  A                + +++D  +  +  
Sbjct: 3   KSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHY-DLVILDLMIPKMNG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           F     +R+     D+ +  +    D   +I G   GA+ ++ KPF    L   ++    
Sbjct: 62  FEVCKKIREK---QDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLA 118

Query: 120 MQK 122
             +
Sbjct: 119 RYE 121


>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
 gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
          Length = 234

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L+V+    +  + R      G  V    +  +A +   ++ +   +++D ++  +  
Sbjct: 3   THVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQL-RDNVFQLILLDLNLPDMDG 61

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R       V +  L    +    + G  AGA+ +L KPF+   L+  ++ L +
Sbjct: 62  LDICKKIRINDAI--VPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLR 119

Query: 120 MQKSKD 125
               + 
Sbjct: 120 RSNVQA 125


>gi|159045360|ref|YP_001534154.1| response regulator [Dinoroseobacter shibae DFL 12]
 gi|157913120|gb|ABV94553.1| response regulator [Dinoroseobacter shibae DFL 12]
          Length = 462

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+VD     R V +       + V +A +   A +    E  P+ +++D  M  +   
Sbjct: 4   KILVVDDVATNRIVMKVKLATACYDVLQADNGASAIKMA-HEAQPDLILLDVLMPDMDGY 62

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                ++  P    + +  +    D E  + G   GA+ FL KP    TL   +R L +
Sbjct: 63  TVCERLKADPETAHIPIIMITSLNDTEARVRGLSCGADEFLTKPVTELTLLARVRSLLR 121



 Score = 51.3 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 36  EAREFCEKELLPNYLVIDESMEGV-LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGAR 94
           +A E  + +     +  D    G  L  +  +R  P        ++L + + E       
Sbjct: 188 QALEASKDQPEVFIIEADPRRLGSSLGILTDLRSRPATRQSRQIFILPQGETELAARALD 247

Query: 95  AGANSFLLKPFNRETLRFAMRELPQMQKSKDE 126
            GA+  +  P   E +   +R   Q +++ D+
Sbjct: 248 LGADDVVFAPIAVEEMAVRLRAQLQRKRANDQ 279


>gi|39997411|ref|NP_953362.1| response regulator [Geobacter sulfurreducens PCA]
 gi|39984302|gb|AAR35689.1| response regulator [Geobacter sulfurreducens PCA]
 gi|298506348|gb|ADI85071.1| response receiver-modulated diguanylate cyclase [Geobacter
           sulfurreducens KN400]
          Length = 301

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            +L+ D     R +   L   +G+ V EA    +A E  +K   P   V+D  M  +   
Sbjct: 2   RILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEELQKSDAPKLAVLDWVMPVMDGV 61

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             I  VR        ++  L  +   + +I G  AGA+ ++ KPF+   LR  ++ + + 
Sbjct: 62  EVIRQVRARSAEHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGELRARIQ-VGRR 120

Query: 121 -----QKSKDENQFLD 131
                 + ++  + L+
Sbjct: 121 TVELHSRLQETQEALN 136


>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    VR          GF V  A +  EA      E   + LV+D  M  +  
Sbjct: 23  RTVLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESH-DALVLDVQMPELDG 81

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                    LG D+ +  L         IAG  AGA+ +L KPF+   L   +  L +  
Sbjct: 82  VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRA 141

Query: 122 KSKD 125
              D
Sbjct: 142 HHSD 145


>gi|148264057|ref|YP_001230763.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
 gi|146397557|gb|ABQ26190.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
          Length = 364

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ +     R +       +G+ V       EA +    E  P   ++D  M G+ 
Sbjct: 1   MK-ILIAEDEPAFRLLLEETLARWGYEVVVTKDGNEAWQALRAEDAPRLAILDWLMPGIN 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+  +G  +++  L  +   E ++ G  AGA+ ++ KP   + L+  +    
Sbjct: 60  GPELCRKIRKEAMGHYIYIILLTSQQKDEDLVVGMEAGADDYITKPLKTDELKVRLNAGR 119

Query: 119 QMQKSKD 125
           ++ + ++
Sbjct: 120 RIVELQN 126


>gi|307300188|ref|ZP_07579973.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307316459|ref|ZP_07595902.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306897657|gb|EFN28400.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306905077|gb|EFN35660.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++        G  V       + R F E   + + +++D  M G    +
Sbjct: 7   ILIVDDDREIRELVSAYLKKNGLRVTAVADGRQMRTFLEANTV-DLIILDLMMPGDDGLV 65

Query: 64  --AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R +       +  L    D    I G   GA+ ++ KPF+   L   ++ + +  
Sbjct: 66  LSRELR-VGRHKATPIVMLTARSDEMDRIIGLEMGADDYIAKPFSARELLARIKAVLRRA 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPAN 130


>gi|304405929|ref|ZP_07387587.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345172|gb|EFM11008.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 259

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM-EGVLE 61
            +L+VD    +  + +      G+ V  A    EA     +E     L+      +   +
Sbjct: 4   KILVVDDEQPIADILKFNLEKEGYEVICAFDGGEAVRLAYEERPDLMLLDLMLPVKDGTD 63

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               VR    G  + +  L  +      + G   GA+ ++ KPF+   L   ++   + Q
Sbjct: 64  VCREVRA---GLQLPIIMLTAKDTELDKVLGLELGADDYVTKPFSTRELLARVKAQLRRQ 120

Query: 122 KSKDE 126
           K   E
Sbjct: 121 KKASE 125


>gi|301058104|ref|ZP_07199156.1| putative fused DNA-binding response regulator in two-component
           regulatory system with ZraS: response regulator/sigma54
           interaction protein [delta proteobacterium NaphS2]
 gi|300447736|gb|EFK11449.1| putative fused DNA-binding response regulator in two-component
           regulatory system with ZraS: response regulator/sigma54
           interaction protein [delta proteobacterium NaphS2]
          Length = 454

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 1/132 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M+++L+VD       V   L +  G+ +  A     A     +E   + ++ D  M G+ 
Sbjct: 1   METILIVDDEKNYLVVLEALLSAEGYEIITARDAKMAVSIL-READVDLVITDMKMPGMS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                   M + +++ V  +      E  +   +  A  ++ KPF  ETL+  +++  + 
Sbjct: 60  GMELLEECMKIDSEIPVIMMTAFGTIEMAVEAMKKHAYDYIQKPFENETLKLTVKKAMEN 119

Query: 121 QKSKDENQFLDA 132
            +   EN+ L  
Sbjct: 120 HRLLKENRLLAE 131


>gi|270263521|ref|ZP_06191790.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042405|gb|EFA15500.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 246

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +  V   + N+  F V       EA     ++     +++D  +      +
Sbjct: 5   VLIVDDDPAICDVLCDVLNEHVFTVHACHRGSEALALLNQQPDIALVLLDLILPDTNGLL 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKS 123
              +   L  D+ V  L        ++ G   GA+ ++ KPFN   +    + + +   +
Sbjct: 65  VLQQIHRLRPDLPVVMLTGLGSESDVVVGLEMGADDYIAKPFNPRVVVARAKAVLRRTGA 124

Query: 124 KD 125
             
Sbjct: 125 LA 126


>gi|260467116|ref|ZP_05813295.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029128|gb|EEW30425.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 239

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           LL+VD    +R + +    + GF V  A +  EAR      L  + LV+D  M G   ++
Sbjct: 20  LLVVDDDTRIRNLLKQYLTENGFRVTVAGNADEARRKL-AGLDFDLLVLDVMMPGESGVD 78

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R      +V +  L    + +  I+G  AGA+ +L KPF+   L   +  + + 
Sbjct: 79  LTKSLRAE---KNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRR 134


>gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 1   MDS---LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME 57
           M     +L+ D    +  V        GF V    +  E     E  L P+ +++D  + 
Sbjct: 1   MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLE-GLHPSLIILDLMLP 59

Query: 58  G--VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMR 115
                E    VR       V +  L  +   E  + G + GA+ ++ KPFN   +   ++
Sbjct: 60  DIPGEEVCMAVRARSA---VPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQ 116

Query: 116 ELPQM 120
            + + 
Sbjct: 117 AILRR 121


>gi|239980291|ref|ZP_04702815.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452155|ref|ZP_06591545.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355104|gb|EFE82006.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 239

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L V+   ++R+  +      GF V          E    +  P+  ++D  + G+  
Sbjct: 5   THVLFVEDDDVIREATQLALERVGFRVTAMPDGLSGLEAFRAD-RPDIALLDVMVPGMDG 63

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R     + V V  L    D   ++ G  AGA+ ++ KPF+   L   +R + +
Sbjct: 64  VSLCRRIR---DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLR 120

Query: 120 M 120
            
Sbjct: 121 R 121


>gi|308235379|ref|ZP_07666116.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114873|ref|YP_003986094.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946367|gb|ADP39071.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 2/121 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +           G+     +    A +     L P+ +++D  +  +  
Sbjct: 12  RTILVVEDEPDLATAIAQRIVARGWKARVVSDGVSAVKAALT-LKPDLIIMDVMLPVMDG 70

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
             A  R +     + V  L         +AG  AGA+ ++ KPF+   L      + +  
Sbjct: 71  IEATRRIVSRYP-IPVLMLTARDAESDKLAGLSAGADDYVTKPFSPRELIARCAAILRRV 129

Query: 122 K 122
           +
Sbjct: 130 E 130


>gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+V+   ++  + +      GF  +  ++  EA +  E  L P+ +++D  +   
Sbjct: 1   MKGKILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFET-LKPDVVILDLMLPDT 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
             F   + ++   TD  +  L      E  I G   GA+ ++ KPFN   L   ++ L +
Sbjct: 60  DGF--ELCKLFSSTDSMLLILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLR 117

Query: 120 MQK 122
            +K
Sbjct: 118 RRK 120


>gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
 gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LL+V+    +         D G+ V       EA E+   E   + +V+D ++ G+   
Sbjct: 4   RLLIVEDEKQICDAVAKSLYDAGYEVDTCYDGEEALEYILTENY-DLIVLDLNLPGMDGM 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
                      +  V  L         + G  AGAN ++ KPF+ + L   +R L + +
Sbjct: 63  EILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 121


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  130 bits (329), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
            LL+V+    + +       D G++V  A    E   F       + +V+D  +  +   
Sbjct: 2   RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEG-HFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 62  -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
             +   R+      + V  L     +   + G  AGA+ ++ KPF+ E +   +R L + 
Sbjct: 61  SVLEAWRRNDRT--MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRR 118

Query: 121 QKSKDENQF 129
                +++ 
Sbjct: 119 STGHAQSEL 127


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 7/128 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +L+++    + +         G+ V  A       E      + + +++D  +   
Sbjct: 1   MKTRILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNV-DLIILDLMLPEL 59

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             +E    VR+    +DV +  L  + D    + G  +GA+ ++ K F  E L   +R +
Sbjct: 60  SGIEVCRRVRKE---SDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVI 116

Query: 118 PQMQKSKD 125
            + +  K+
Sbjct: 117 LKRKSKKE 124


>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 228

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 2/127 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+++    + +  +      G+ V    S              + +++D  + G+  F
Sbjct: 4   SILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNY-DLIILDLMLPGLDGF 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
            + +R++   +   V  L  + + +  + G   GA+ +L KPF+ E L   +R + +   
Sbjct: 63  -SVLRELRKKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNA 121

Query: 123 SKDENQF 129
             + N+ 
Sbjct: 122 KSNANKL 128


>gi|313673726|ref|YP_004051837.1| response regulator receiver protein [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940482|gb|ADR19674.1| response regulator receiver protein [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 121

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL D    +RKV        GF V EA++  +A E  +    P  +V+D  M  + 
Sbjct: 1   MK-VLLADDELRLRKVVVLHLKKAGFDVIEASNGKQAVELAKIHN-PEIIVLDVMMPEMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                   R+ P      +  L  +   + +  G  AGA+ +L KPF+ + L   ++EL 
Sbjct: 59  GITACKEFRKSPEFAKTPIIMLTAKATSDDIEVGKSAGASEYLTKPFSPKELIEKIQELM 118


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +R + +      G+ V EA     A +    E   + +++D  +    
Sbjct: 1   MKKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFY-EKPFDLVILDIMLPKKD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            + + +R++   + V V  L    D E  + G   G + ++ KPFN + L   ++ L +
Sbjct: 60  GW-SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIK 117


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLV+    +  + +      GF V  A    +       E + + +V+D  +  +  +
Sbjct: 2   RVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMA-SENVYDVIVLDVMLPRMNGY 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R         +  L  +            GA+ FL KPF+   L   +R L + 
Sbjct: 61  TVCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRR 118


>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
           C3-41]
 gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            LLLV+   ++ ++        G+ V  A    EA E  E     + +++D ++  +   
Sbjct: 2   KLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEY-DLIILDLNLPKMDGI 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               +      DV +  L         I G   GAN +L+KPF+ + L   +R L +   
Sbjct: 61  EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120

Query: 123 SKD 125
           S+ 
Sbjct: 121 SQK 123


>gi|149280656|ref|ZP_01886769.1| two-component system sensor histidine kinase/response regulator
           hybrid [Pedobacter sp. BAL39]
 gi|149228596|gb|EDM34002.1| two-component system sensor histidine kinase/response regulator
           hybrid [Pedobacter sp. BAL39]
          Length = 707

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 54/127 (42%), Gaps = 3/127 (2%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+V+    +       F   G+    A +  +A +  +K    + ++ D  M  +  
Sbjct: 447 QTVLVVEDDPSLLDFLSKSFTAEGYYTLRAKNGKDALKQLDKH-QVDLVISDVMMPVMTG 505

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 ++     + + V  L  + + E  I G  +GA++++ KPF  + L   ++ L +
Sbjct: 506 VELCRIIKNDIAYSHLPVVLLTAKTNTEAEIQGLESGADAYIAKPFKWKQLSLIIKNLLE 565

Query: 120 MQKSKDE 126
           +Q +  +
Sbjct: 566 LQFNLKQ 572


>gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 243

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +LLV+    + +          + V    +  +A E    E   + +++D  + G+  F 
Sbjct: 8   ILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYE-RFDLIILDVMLPGIDGFA 66

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +RQ+     V V  L    D    IAG   GA+ +L KPFN       +  + + 
Sbjct: 67  VCREIRQLDA--RVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRR 123


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +           G+            E    +   + +++D  +    
Sbjct: 1   MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQD-FDVILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR++    D  +  +         ++G   GA+ +++KPF  E L   +R L 
Sbjct: 60  GIEVARRVREI---KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALL 116

Query: 119 QMQKSKDEN 127
           +    +D N
Sbjct: 117 RRISIEDGN 125


>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 236

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+ D    + ++          +++ A +  +A E  E     +  +ID  M  + 
Sbjct: 1   MAKILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIE-NNDIDLAIIDIMMPKID 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   V+++    ++ V  L  + ++   I G   GA+ ++ KPFN   +   ++   + 
Sbjct: 60  GY-HLVKKIREKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRR 118


>gi|328950079|ref|YP_004367414.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450403|gb|AEB11304.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 218

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME----G 58
            +LLV+    V +  R L    G+ V  A  +  A      +  P+  ++D  +     G
Sbjct: 2   RILLVEDEPTVAEPLRALLTREGYAVTWAPDLEAAWRAL-TDGEPDLAILDVMLPEDENG 60

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
              F   +R    G    + +L      E  +AG   G + +L+KPF    L   +R L 
Sbjct: 61  GFVFAQQLR--EAGYQGPILFLTARDALEDRVAGLDLGGDDYLVKPFALRELLARVRALL 118

Query: 119 QMQKSKDENQF 129
           + +    +++ 
Sbjct: 119 RREAQTKQSRL 129


>gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++    + ++ R       F V  A                + +V+D  + GV 
Sbjct: 1   MKKILIIEDDRKIAELERDYLEINDFQVALAADGDTGL-LFAVRDDFDLIVLDLMLPGVD 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     +R+     +  +  +  + D    I G   GA+ +++KPF+   L   ++   
Sbjct: 60  GFAICRRIREK---KETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHI 116

Query: 119 QM-QKSKDENQF 129
              ++   + + 
Sbjct: 117 GRFERLTSQEKR 128


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +  V  +    F   GF         E  +   +E   + +++D  +  + 
Sbjct: 1   MK-ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENW-DLIILDIMLPSMD 58

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
                  +R+    + V +  L  +      + G   GA+ ++ KPF+  TL   ++ + 
Sbjct: 59  GVTICRKIRE---TSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVI 115

Query: 119 QMQKS 123
           +  ++
Sbjct: 116 RRYQA 120


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 52/125 (41%), Gaps = 3/125 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +   ++      ++ G+++   +   +      K+     +++D  + G+ 
Sbjct: 38  MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDY-ALIILDIMLPGMD 95

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   ++ +       V  L      +  + G  +GAN +L+KPF+   L   +R   + 
Sbjct: 96  GW-QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 154

Query: 121 QKSKD 125
             + +
Sbjct: 155 HHALN 159


>gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 231

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 5/119 (4%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VLE 61
           +L+V+    +  + R      GF V              + L P   V+D ++ G    E
Sbjct: 11  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARR-LRPVACVLDIALPGLAGTE 69

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R    G    V +L    D    I G   GA+ ++ KPF+   L   +R + + 
Sbjct: 70  ICRRLR--EAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRR 126


>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 268

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+VD    + ++        GF   +A +  +A +   +   P+ +V+D  +     L
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDE-TRRFSPDVVVLDLGLPELDGL 100

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E    +R     +D ++  L      +  I+G   GA+ ++ KPF+   L   +  + + 
Sbjct: 101 EVCRRIR---TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157

Query: 121 QK 122
            +
Sbjct: 158 PR 159


>gi|187930436|ref|YP_001900923.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187727326|gb|ACD28491.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 234

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +R+  R    + G  V EA  V            P+ +++D  +      
Sbjct: 11  TVLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGT-RQPDAVILDLGLPDGDGM 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R++   T+V V  L   VD    I    AGA+ +L KPF    L   +R L +   
Sbjct: 70  -QLIRELRTWTEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHA 128

Query: 123 SKDEN 127
            + E+
Sbjct: 129 KRGED 133


>gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD    +R+       + G  VF+A    +A     ++   + +++D  M  +   
Sbjct: 5   KVLIVDDEDEIREAVEIYLKNEGIAVFKAKDGIDAL-MLLEDHDIHLIIMDIMMPKMDGI 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            A  +      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 64  KATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120


>gi|209549644|ref|YP_002281561.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535400|gb|ACI55335.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 246

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R++        G     A    + R F E   + + +V+D  M G     
Sbjct: 7   ILVVDDDREIRELVSGYLQKNGLRTSTAADGRQMRSFLEANAV-DLIVLDVMMPGDDGLV 65

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               +R       + +  L    D    I G   GA+ +L KPF    L   ++ + +  
Sbjct: 66  LCRELRA-GRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAARELLARIKAVLRRT 124

Query: 122 KSKDEN 127
           +    N
Sbjct: 125 RMLPPN 130


>gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +++L+VD    +R +      + G+ VF+A    EA E  E+E + N +V+D  M  +  
Sbjct: 3   NNILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEV-NLMVLDIMMPDMDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                R     + + +  L  +V+    I G   GA+ ++ KPFN   L   +R L + 
Sbjct: 62  LEVCKRARQKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--G 58
           M  +L+++    +           G+            E    +   + +++D  +    
Sbjct: 1   MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQD-FDVILLDLMLPELN 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            +E    VR++    D  +  +         ++G   GA+ +++KPF  E L   +R L 
Sbjct: 60  GIEVARRVREL---KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALL 116

Query: 119 QMQKSKDEN 127
           +    +D N
Sbjct: 117 RRISIEDGN 125


>gi|75907253|ref|YP_321549.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75700978|gb|ABA20654.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 330

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF- 62
           +L+VD    +R   R      G+   EA    +A     +EL P+ +++D  M  +  F 
Sbjct: 12  ILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRKALTIF-QELQPDIVLLDAIMPDLDGFE 70

Query: 63  -IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121
               ++ +  G    V  +    D E +      GA  ++ KP +   LR  ++ L Q  
Sbjct: 71  CCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQS 130

Query: 122 KSKDENQ 128
             + + +
Sbjct: 131 HLQQKLE 137


>gi|148264601|ref|YP_001231307.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398101|gb|ABQ26734.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 48/122 (39%), Gaps = 3/122 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG-- 58
           M ++L+++    + ++        G+    A       E       P+ +++D  + G  
Sbjct: 1   MKTILVIEDEKDLAELIAFNLEKEGYRPLIALDGISGLEAVRSNP-PDLILLDLMLPGLL 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
             E    +++      + +  L  + +    + G   GA+ +++KPF+   L   ++ + 
Sbjct: 60  GTEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVL 119

Query: 119 QM 120
           + 
Sbjct: 120 RR 121


>gi|332885319|gb|EGK05570.1| hypothetical protein HMPREF9456_02771 [Dysgonomonas mossii DSM
           22836]
          Length = 226

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           ++L++D    +R++     +  G+   EAT+  E          P+ +++D  +  +   
Sbjct: 5   TILIIDDETQIRRLLEITLSASGYKTIEATTGKEGL-LMVASHQPSLIILDLGLPDMDG- 62

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           I  ++ +       +  L +    E ++     GAN +L KPF    L   +R   +  +
Sbjct: 63  IDVLKSLREWFYKPIIILSVRNSEEDIVHALDKGANDYLSKPFRTGELLARIRASLRQGQ 122

Query: 123 SKDE 126
           + +E
Sbjct: 123 TANE 126


>gi|332185060|ref|ZP_08386809.1| response regulator [Sphingomonas sp. S17]
 gi|332014784|gb|EGI56840.1| response regulator [Sphingomonas sp. S17]
          Length = 236

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--VL 60
           ++L+V+    +R +      + GF V  A +  E  +  E     + +++D  + G   +
Sbjct: 5   TILIVEDDPALRTLTARALQENGFAVKLANAAPEMWQALEVG-QIDLILLDIMLPGTSGI 63

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           +    VRQ      V + ++  +      + G   GA+ +L KPF+   L   +R + + 
Sbjct: 64  DLCRQVRQRNA---VPIIFISAKGSEVDRVVGLELGADDYLPKPFSTRELVARIRAVLRR 120

Query: 121 QKSKD 125
              ++
Sbjct: 121 GGLEN 125


>gi|325970045|ref|YP_004246236.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324025283|gb|ADY12042.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 232

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV 59
           M   +L+VD    ++ V   +  D G+         EA     +E LP+ +++D  + G+
Sbjct: 1   MKGKVLVVDDERDIQDVLAFVLEDAGYETRTTGRGDEAL-VLAQEWLPDIVILDIGLPGL 59

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                  R + +  D+ V  L      ++++ G   GA  ++ KPFN + L   + ++ +
Sbjct: 60  NGLEVCPRLVAM--DIPVIVLSSHDRDDQIVEGLEVGAEDYVSKPFNLKELLLRVEKILR 117

Query: 120 MQK 122
             +
Sbjct: 118 RTR 120


>gi|269961390|ref|ZP_06175755.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833941|gb|EEZ88035.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 221

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+VD    + ++   +  + G++V        A ++ EK  + + +++D  +  + 
Sbjct: 1   MSRVLIVDDDVPLCELLETVLQEEGYIVSSVHCGESALQYMEKTPV-DLVLLDVMLPNLN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                 R         +  L    D   M+ G +AGA+ ++ KPFN   L   ++ + + 
Sbjct: 60  GMQVARRICQRFA-TPILMLTALNDENSMLDGYQAGADQYIGKPFNVSELLMRIKAILRR 118

Query: 121 QKSKDENQFL 130
              + + Q +
Sbjct: 119 VGLERQRQAM 128


>gi|260439233|ref|ZP_05793049.1| phosphate regulon response regulator PhoB [Butyrivibrio crossotus
           DSM 2876]
 gi|292808248|gb|EFF67453.1| phosphate regulon response regulator PhoB [Butyrivibrio crossotus
           DSM 2876]
          Length = 225

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 1   MDS--LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M +  + +V+  + + ++      + G++     +     +   +   P+ +++D  +  
Sbjct: 1   MKTPLVYIVEDDNNISEIESFALKNSGYITEVFETGKNFFKHL-QNKKPDIVLLDIMLPD 59

Query: 59  VLEF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
           +     +  ++  P    + V  +  +      + G   GA+ ++ KPF    L   ++ 
Sbjct: 60  MDGLEILKKMKNTPDYKKIPVIMVTAKTTEIDKVKGLDLGADDYISKPFGIMELISRVKA 119

Query: 117 LPQMQKSKDENQFLD 131
           L +   + +E + L 
Sbjct: 120 LLRRTLNLEEEKVLS 134


>gi|302879220|ref|YP_003847784.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582009|gb|ADL56020.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 234

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 7/128 (5%)

Query: 1   MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG- 58
           M   +LLVD    +  + R      GF V              +    +  V+D  M G 
Sbjct: 6   MKTKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHH-DIAVLDVMMPGK 64

Query: 59  -VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117
             ++ +  +R       + V  L    D    I G   GA+ ++ KP     L   +R +
Sbjct: 65  SGIDVLVQIRAQGA---MPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAI 121

Query: 118 PQMQKSKD 125
            +     +
Sbjct: 122 LRRSSGAE 129


>gi|209696203|ref|YP_002264133.1| transcriptional regulator, CpxR [Aliivibrio salmonicida LFI1238]
 gi|208010156|emb|CAQ80481.1| transcriptional regulator, CpxR [Aliivibrio salmonicida LFI1238]
          Length = 227

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LLVD    +  + + + N  G+ V EA +  E       +L    L I       +
Sbjct: 1   MAKILLVDDDVELTALLKDILNLEGYTVVEANNGIEGLNAITDDLDLILLDIMMPKMNGM 60

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           + +  +R+     +  V  L  + +    + G   GA+ +L KPF+   L   +R + + 
Sbjct: 61  DMLRKLRE---TNETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117

Query: 121 QKSKDENQFLDAI 133
            + K +    ++I
Sbjct: 118 TQGKTKENHTNSI 130


>gi|219684707|ref|ZP_03539650.1| response regulatory protein [Borrelia garinii PBr]
 gi|219672069|gb|EED29123.1| response regulatory protein [Borrelia garinii PBr]
          Length = 307

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 4/126 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             LL+VD S     +  ++     + V  AT+  +A +  EK+  P+ +++D  +     
Sbjct: 15  QKLLIVDDSPTNLDLLVNILQGA-YEVEVATNGLDALKQVEKDN-PDLILLDIGLPDING 72

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
            E    ++  P   ++ V ++      +  + G   G   ++LKPFN   +   ++   +
Sbjct: 73  YEVCRKLKSDPDTKEIPVIFISSRGSTDAQLEGFNVGGVDYILKPFNSRIIDARVKTHLE 132

Query: 120 MQKSKD 125
           +++ +D
Sbjct: 133 LKRLRD 138


>gi|254975899|ref|ZP_05272371.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093285|ref|ZP_05322763.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315032|ref|ZP_05356615.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517702|ref|ZP_05385378.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650814|ref|ZP_05397716.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683895|ref|YP_003215180.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687555|ref|YP_003218689.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520712|ref|ZP_07407059.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210058|emb|CBA64143.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213572|emb|CBE05342.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
            ++L+VD    +            F V +A    EA +    E     +++D  M  +  
Sbjct: 3   QNILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILI-ENDIKLIIMDVMMPNLDG 61

Query: 62  FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               ++      ++ +  L  + +    I G   GA+ ++ KPFN   L   ++   + 
Sbjct: 62  LKTTLKIREK-RNIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRR 119


>gi|68249471|ref|YP_248583.1| two-component response regulator [Haemophilus influenzae 86-028NP]
 gi|145634047|ref|ZP_01789758.1| DNA-binding response regulator in two-component regulatory system
           with ArcB or CpxA [Haemophilus influenzae PittAA]
 gi|145636986|ref|ZP_01792650.1| aerobic respiration control protein ArcA [Haemophilus influenzae
           PittHH]
 gi|148826471|ref|YP_001291224.1| two-component response regulator [Haemophilus influenzae PittEE]
 gi|229844763|ref|ZP_04464902.1| two-component response regulator [Haemophilus influenzae 6P18H1]
 gi|68057670|gb|AAX87923.1| aerobic respiration control protein ArcA [Haemophilus influenzae
           86-028NP]
 gi|145268491|gb|EDK08484.1| DNA-binding response regulator in two-component regulatory system
           with ArcB or CpxA [Haemophilus influenzae PittAA]
 gi|145269844|gb|EDK09783.1| aerobic respiration control protein ArcA [Haemophilus influenzae
           PittHH]
 gi|148716631|gb|ABQ98841.1| aerobic respiration control protein ArcA [Haemophilus influenzae
           PittEE]
 gi|229812477|gb|EEP48167.1| two-component response regulator [Haemophilus influenzae 6P18H1]
 gi|309973619|gb|ADO96820.1| Aerobic respiration control protein ArcA [Haemophilus influenzae
           R2846]
          Length = 236

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+   + R   + +F   G+ VFEA +  E           N +V+D ++ G    
Sbjct: 5   KILVVEDEIVTRNTLKGIFEAEGYDVFEAENGVE-MHHILANHNINLVVMDINLPGKNGL 63

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +   R++     + + +L    +    I G   GA+ +L KPFN   L    R L     
Sbjct: 64  LLA-RELREELSLPLIFLTGRDNEVDKILGLEIGADDYLTKPFNPRELTIRARNLLHRTM 122

Query: 123 SKDENQ 128
           S  E +
Sbjct: 123 SHQEKE 128


>gi|257792572|ref|YP_003183178.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325832739|ref|ZP_08165502.1| KDP operon transcriptional regulatory protein KdpE [Eggerthella sp.
           HGA1]
 gi|257476469|gb|ACV56789.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325485878|gb|EGC88339.1| KDP operon transcriptional regulatory protein KdpE [Eggerthella sp.
           HGA1]
          Length = 235

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+    VR++     +  G+   EA +  +A      +  P+  ++D  +      
Sbjct: 6   RILVVEDDAAVRRLVTTTLDLHGYAYREARTASQALLELSSQP-PDLAILDLGLPDGDGV 64

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
              +R +   + + V  L   ++    +    AGA+ +L+KPF+ E L   +R   +   
Sbjct: 65  -EVIRTLRGWSSLPVIVLSARLEDADKVEALDAGADDYLVKPFSVEELLARVRVALRRLD 123

Query: 123 SKDENQ 128
            +   +
Sbjct: 124 RERAMK 129


>gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 233

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ LVD    +         + G+ V   T    A E  +    PN  + D  M  + 
Sbjct: 1   MPTIALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRP-PNLAIFDIKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +D+ V +L  + +    + G + GA+ ++ KPF++  L   +R + + 
Sbjct: 60  GM-ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRR 118


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +LL++ +    +  R    + G++V  A    +      +E   + +++D  + G+ 
Sbjct: 23  MK-ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHY-SLIILDIMLPGLD 80

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            +   +R +          L      E  + G  AGAN +L+KPF+   L   +R   + 
Sbjct: 81  GW-QVLRALRTAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQ 139

Query: 121 Q 121
            
Sbjct: 140 H 140


>gi|114319518|ref|YP_741201.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225912|gb|ABI55711.1| response regulator receiver protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 121

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L++D S       R +    G  + EA    +  E       P+ +++D  M G+ 
Sbjct: 1   MARILVIDDSPTDLHAIRSILEGEGHQLIEAGDGEQGLEQARSAH-PDLILMDIVMPGMN 59

Query: 61  EF--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
            F     + +      + V  +  +      I   R GA  ++ KP  R+ L   +R + 
Sbjct: 60  GFQATRRLNRDAETASIPVIMVSSKDQATDRIWAKRQGAVDYIAKPVERDELLQKVRAVL 119


>gi|332296825|ref|YP_004438747.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179928|gb|AEE15616.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 238

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+++ +    +         G+ V  A+      +   K  + +  +ID  + G  
Sbjct: 1   MSKILVIEDNKNQLEALTDRLKAEGYDVLSASDGTTGAQLLAKN-ICSLALIDIMLPGKN 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F         G  V V ++  + +    ++G R GA+ ++ KP++   L   +  L + 
Sbjct: 60  GFDIITDYRRAGGSVPVIFVSAKSELTDKVSGLRLGADDYVTKPYDFPELIARIEALLRR 119

Query: 121 QKSKDENQ 128
            K++ E +
Sbjct: 120 TKTQTETE 127


>gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +LLVD    +  + +       + V  A    +A +  + E LP+ +V+D  +  +  F
Sbjct: 2   KILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSE-LPDLIVLDLMLPDMDGF 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                   + +++ +  L  +      + G + GA+ ++ KPF+   L   +R + + 
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRR 118


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEG--V 59
             +L+V+    +           GF+V  A     A E  E    P+ LV+D  + G   
Sbjct: 37  RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEA-WQPDLLVLDVMLPGFDG 95

Query: 60  LEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
           LE    V+       V V  L    D   M+ G   GA+ ++ KPF+   +   +  L +
Sbjct: 96  LEVCRRVQAH---RPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLR 152

Query: 120 MQKSKD 125
             +   
Sbjct: 153 RVERAA 158


>gi|296122427|ref|YP_003630205.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014767|gb|ADG68006.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 151

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESME--GVL 60
            +L+ D +    ++         + +  A    +  E   +E  P+ +++D  M      
Sbjct: 6   RILIADDNLQNCELLDAYLASDEYEIAMAYDGQQTLEKV-REWQPDLVLLDIMMPKLSGF 64

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
           E  A +R  P    + V  +    +   +    +AGA+ FL KP NR  L   ++ L ++
Sbjct: 65  EVCAKLRSEPSTKSLPVLMVTALNEMGDIEKAIQAGADDFLTKPINRLELTTRVKSLLRV 124

Query: 121 QKSKDENQFLDA 132
           +   +E   L A
Sbjct: 125 RHLTNERDRLLA 136


>gi|260589381|ref|ZP_05855294.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|260540462|gb|EEX21031.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
          Length = 239

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 49/126 (38%), Gaps = 6/126 (4%)

Query: 1   MD----SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESM 56
           M     S+L+V+    +R +         +    A +  +A         P+ +++D  +
Sbjct: 2   MKGNKPSVLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAI-MLAAANNPDIILMDLGL 60

Query: 57  EGVLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRE 116
             +   I  +R++   +   +  +    D +  +A    GA+ +L KPF+   L   +R 
Sbjct: 61  PDIDG-IEVIRKIRTWSVAPIIVISARSDEKDKVAALDVGADDYLTKPFSVTELSARLRA 119

Query: 117 LPQMQK 122
             +  +
Sbjct: 120 TTRRIQ 125


>gi|237653495|ref|YP_002889809.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thauera sp. MZ1T]
 gi|237624742|gb|ACR01432.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Thauera sp. MZ1T]
          Length = 360

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M++LL+VD       V  HL   + + V    S           L P+ +++D  M  + 
Sbjct: 1   MNTLLIVDDEPANLAVLTHLLQPY-YRVRAVNSGRRCLAAVRPPLKPDLILLDVMMPEMD 59

Query: 61  E--FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               +A +R  P  +D+ V ++    D     +G   GA  +L KP     L   +R   
Sbjct: 60  GYEVLARLRADPATSDIPVLFVTALDDDLNEESGLARGAADYLTKPIRPGVLLARVRTQL 119

Query: 119 QMQK----SKDENQFLDA 132
           + ++     +D+N  LDA
Sbjct: 120 EAKRGRDFLRDQNALLDA 137


>gi|119487928|ref|ZP_01621425.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455504|gb|EAW36642.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 363

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+VD       V      +  + +  A+S  +A +       P+ +++D  M  +   
Sbjct: 5   KILIVDDEPNNFDVIEAQLLEEPYELSYASSGIKALQRLPL-FKPDVILLDVMMPEMDGV 63

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                ++  P  + + +  +      ++M      GA+ F+ KP +   LR  +R + ++
Sbjct: 64  KVCQKIKSDPQWSHIPIVAVTALNSKQEMARCLEGGADDFISKPASSIELRARIRSMLRI 123

Query: 121 QKSKDENQF 129
           ++  D  Q 
Sbjct: 124 KQQYDTLQQ 132


>gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 2/133 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M  +L+V+    +           GF     +    A E  +K    + +++D  +  + 
Sbjct: 1   MPHILIVEDEAAIADTLVFALQGEGFDTTWLSLGAAALEH-QKSAPADLIILDVGLPDIS 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
            F    + +   +DV V +L         + G   GA+ +++KPF+   +   +R + + 
Sbjct: 60  GFETC-KNLRRFSDVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 118

Query: 121 QKSKDENQFLDAI 133
              +   +   A+
Sbjct: 119 VAPRPAAESSTAL 131


>gi|323139197|ref|ZP_08074253.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322395580|gb|EFX98125.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 239

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+LLV+    + ++      + G  V        A +    +   + L++D ++ G    
Sbjct: 6   SVLLVEDDAEIGELVSRYLENNGMDVTLVADGA-AMDARFSKESFDILILDLNLPGEDGL 64

Query: 63  --IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                VR      ++ +  L    +  + I G   GA+ +++KPFN   L   +R + + 
Sbjct: 65  SICRRVR---TTHEIPIIILTANGEDVEKILGLEMGADDYIVKPFNSRELLARVRAVLRR 121

Query: 121 QKSK 124
            +++
Sbjct: 122 TEAR 125


>gi|312963549|ref|ZP_07778031.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
 gi|311282355|gb|EFQ60954.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
           PAS/PAC sensor(s) [Pseudomonas fluorescens WH6]
          Length = 701

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LL+VD         R L     + V  A S  EA E   K  + + +++D  M G+  F 
Sbjct: 14  LLVVDDYPENLISMRALLQRDDWQVVTAASGVEALELLLKHEV-DLVLLDVKMPGMDGFE 72

Query: 64  --AHVRQMPLGTDVFVYYLLMEV-DFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               +R         + +L         ++ G  +GA  +L KPF+   L+  ++ L + 
Sbjct: 73  VARLMRGSQRTRMTPIIFLSANAQSPASVLEGYASGAIDYLFKPFDPHILKPKVQALLEH 132

Query: 121 QKSKDENQFLD 131
           Q+++   Q L 
Sbjct: 133 QRNRRALQRLS 143


>gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 237

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
           S+L+VD   ++    ++     G           A +       P+ +V+D  + G+   
Sbjct: 11  SVLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRA-TAPDVVVLDLGLPGMDGV 69

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
               RQ+   +D +V  L    D    + G   GA+ ++ KPF+   L   ++ L +  +
Sbjct: 70  EVC-RQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPR 128

Query: 123 S 123
           +
Sbjct: 129 A 129


>gi|297539092|ref|YP_003674861.1| Fis family two component sigma54 specific transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258439|gb|ADI30284.1| two component, sigma54 specific, transcriptional regulator, Fis
           family [Methylotenera sp. 301]
          Length = 456

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
             +L VD    +R++        G+    A +  EA     +    + +V D  M  +  
Sbjct: 5   KRILAVDDEPHMRRLLEISLRQAGYQPVVAENGKEALTIL-RNDNIDLVVSDLHMPVMDG 63

Query: 62  F--IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
              +  +R      D  V  +  + +    +   + GA+ ++L+PF+ ETL  A+     
Sbjct: 64  LKLLEALRA--ENIDTPVIIVTAQGEISSAVQAMKLGASDYILRPFDLETLEIAISRALS 121

Query: 120 MQKSKDENQFL 130
           + + K ENQFL
Sbjct: 122 VTRLKVENQFL 132


>gi|326315247|ref|YP_004232919.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372083|gb|ADX44352.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 236

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 2/117 (1%)

Query: 6   LVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAH 65
           +++    +R+  R    + G+ V EA ++ E          P+ LV+D  +         
Sbjct: 10  VIEDEPQIRRFVRGALEEEGWQVHEAATLREGLSAAGT-RQPDLLVLDLGLPDGDGLT-L 67

Query: 66  VRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           +R +   + V +  L    D    IA   AGA+ +L KPF    L   +R   +  +
Sbjct: 68  LRDVRNWSAVPIIVLSARTDESDKIAALDAGADDYLTKPFGTGELLARVRANLRRPR 124


>gi|295687624|ref|YP_003591317.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295429527|gb|ADG08699.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 236

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 50/126 (39%), Gaps = 2/126 (1%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL 60
           M ++ L+D    +           G  V          E  E    P+ +++D  M  + 
Sbjct: 1   MATITLIDDDENIVASIAMTLQAHGHTVNHFHDGVSGLEGVEANP-PDLVILDVKMPRMD 59

Query: 61  EFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
                +R++   +++ V  L  + +    + G   GA+ ++ KPF++  L   ++ + + 
Sbjct: 60  GM-EVLRRLRQHSEIPVIMLTSKDEEIDEVLGFNLGADDYMHKPFSQRLLVERVKAVLRR 118

Query: 121 QKSKDE 126
            + + E
Sbjct: 119 ARPEGE 124


>gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1823

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 2/118 (1%)

Query: 3    SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE- 61
             +L+VD           +    G  V  A +  E  E  E+      +++D  M  +   
Sbjct: 1703 KVLIVDDDIRNVFALTSVLEQHGLQVLYAENGREGIEVLEQHDDVVLVLMDIMMPEMDGY 1762

Query: 62   -FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
               A +R+MP    + +  L  +           AGA+ ++ KP + + L   M +  
Sbjct: 1763 ATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIEAGASDYVTKPVDTDHLLTVMEQWM 1820


>gi|153956119|ref|YP_001396884.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856451|ref|YP_002473573.1| hypothetical protein CKR_3108 [Clostridium kluyveri NBRC 12016]
 gi|146348977|gb|EDK35513.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570175|dbj|BAH08159.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 207

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           +L+VD    +R++   +  +       A    EA E  +     + +++D  M  +   +
Sbjct: 6   VLIVDDDENIRELLTIMLKNQNIDYLCAKDGVEALEILKTNK-IDLILLDIMMPRMDGMM 64

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122
           A ++      ++ +  L  ++D    I G   GA+ ++ KPFN   L   ++   +  K
Sbjct: 65  ACMKIREDL-NLPIIILSAKIDDADKIMGLTIGADDYISKPFNPMLLIAKVKSHLRRYK 122


>gi|160897958|ref|YP_001563540.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363542|gb|ABX35155.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 240

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 1/117 (0%)

Query: 4   LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFI 63
           LLLV+  + +R   +      G  V  A     A         P+ +V+D S+ G+    
Sbjct: 15  LLLVEDDNAMRTTLQRTLIRRGIQVETAADGPSALAQWLV-REPDAVVLDLSLPGLDGLQ 73

Query: 64  AHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
              R    G    V  L         + G  AGA+ +L KPF+ + L   +R L + 
Sbjct: 74  VLERARGQGLRTPVLILTARGTVGDRVLGLNAGADDYLAKPFDLDELEARLRALLRR 130


>gi|146302774|ref|YP_001197365.1| two component, sigma54 specific, Fis family transcriptional
           regulator [Flavobacterium johnsoniae UW101]
 gi|146157192|gb|ABQ08046.1| putative two component, sigma54 specific, transcriptional
           regulator, Fis family [Flavobacterium johnsoniae UW101]
          Length = 387

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 50/133 (37%), Gaps = 3/133 (2%)

Query: 1   MDSLLLVDSSHIVRKVGRHLFNDFG--FMVFEATSVCEAREFCEKELLPNYLVIDESMEG 58
           M  +L+++    +R+V   + ++    + V EA       E  +     + ++ D  M  
Sbjct: 1   MSKILIIEDEAAIRRVLVKILSEENDSYQVDEAEDGAAGLEKIKNNDY-DLVLCDIKMPK 59

Query: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
           +           +  ++ +  +    D E  I   R GA  ++ KP +   L   +R   
Sbjct: 60  MDGVEVLEEAKKIKPEIPMVMISGHGDMETAIQTMRLGAFDYISKPPDLNRLLNTVRNAL 119

Query: 119 QMQKSKDENQFLD 131
             ++   EN+ L 
Sbjct: 120 DKKQLVVENKILK 132


>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
           [Geobacter uraniireducens Rf4]
 gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter uraniireducens Rf4]
          Length = 223

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 3   SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEF 62
            +L+V+         R    + GF V  A    E  +        + +++D  + GV  +
Sbjct: 2   RILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREY-DLIILDVMLPGVDGW 60

Query: 63  IAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM 120
               R      D  V +L      +  I G   GA+ +L+KPF    L   +R + + 
Sbjct: 61  QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRR 118


>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 232

 Score =  130 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE 61
           +S+L+VD    + +         GF VF A +  EA E   K       ++D  M  +  
Sbjct: 4   NSILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNC-IQLAILDIMMPQMDG 62

Query: 62  --FIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQ 119
                 +R+      + + +L  +      + G   GA+ +++KPF+       ++   +
Sbjct: 63  IELCRRIREK---HSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLR 119

Query: 120 M 120
            
Sbjct: 120 R 120


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.209    0.687 

Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,526,809,951
Number of Sequences: 14124377
Number of extensions: 178995568
Number of successful extensions: 1062112
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 76558
Number of HSP's successfully gapped in prelim test: 8339
Number of HSP's that attempted gapping in prelim test: 817415
Number of HSP's gapped (non-prelim): 95537
length of query: 133
length of database: 4,842,793,630
effective HSP length: 98
effective length of query: 35
effective length of database: 3,458,604,684
effective search space: 121051163940
effective search space used: 121051163940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.4 bits)
S2: 77 (33.6 bits)